I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 16 04:31:21 -12 2023 I: pbuilder-time-stamp: 1673886681 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [rdkit_201809.1+dfsg-6.dsc] I: copying [./rdkit_201809.1+dfsg.orig.tar.xz] I: copying [./rdkit_201809.1+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 31 01:20:34 2019 -12 gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./rdkit_201809.1+dfsg-6.dsc dpkg-source: info: extracting rdkit in rdkit-201809.1+dfsg dpkg-source: info: unpacking rdkit_201809.1+dfsg.orig.tar.xz dpkg-source: info: unpacking rdkit_201809.1+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying NoDownloads.patch dpkg-source: info: applying postgres_v11_support.patch dpkg-source: info: applying postgres_Makefile_fixes.patch dpkg-source: info: applying postgres_disable_failing_tests.patch dpkg-source: info: applying sphinx_imgconverter.patch dpkg-source: info: applying catch2_header.patch dpkg-source: info: applying testcase_32bit_fix.patch dpkg-source: info: applying fix_coordgen_include_path.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2033627/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='89d7782d6f6f470ca2712280d46861b7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2033627' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.wB3QX5mcpt/pbuilderrc_1vtz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.wB3QX5mcpt/b1 --logfile b1/build.log rdkit_201809.1+dfsg-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 16:21 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2033627/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: bison, cmake, debhelper (>> 9), dh-python, doxygen, flex, imagemagick, latexmk, libboost-dev, libboost-python-dev, libboost-regex-dev, libboost-system-dev, libboost-thread-dev, libschroedinger-coordgenlibs-dev, libschroedinger-maeparser-dev, librsvg2-bin, libsqlite3-dev, pandoc, postgresql-server-dev-all, python-dev, python-pil, python-numpy, python-pandas, python3-sphinx, python3-recommonmark, rapidjson-dev, texlive-fonts-recommended, texlive-generic-extra, texlive-latex-base, texlive-latex-extra, texlive-latex-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>> 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on imagemagick; however: Package imagemagick is not installed. pbuilder-satisfydepends-dummy depends on latexmk; however: Package latexmk is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-regex-dev; however: Package libboost-regex-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-thread-dev; however: Package libboost-thread-dev is not installed. pbuilder-satisfydepends-dummy depends on libschroedinger-coordgenlibs-dev; however: Package libschroedinger-coordgenlibs-dev is not installed. pbuilder-satisfydepends-dummy depends on libschroedinger-maeparser-dev; however: Package libschroedinger-maeparser-dev is not installed. pbuilder-satisfydepends-dummy depends on librsvg2-bin; however: Package librsvg2-bin is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on postgresql-server-dev-all; however: Package postgresql-server-dev-all is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-pil; however: Package python-pil is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-pandas; however: Package python-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-recommonmark; however: Package python3-recommonmark is not installed. pbuilder-satisfydepends-dummy depends on rapidjson-dev; however: Package rapidjson-dev is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-generic-extra; however: Package texlive-generic-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} binfmt-support{a} bison{a} bsdmainutils{a} ca-certificates{a} clang-7{a} cmake{a} cmake-data{a} dbus{a} dbus-user-session{a} dconf-gsettings-backend{a} dconf-service{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} distro-info-data{a} dmsetup{a} docutils-common{a} doxygen{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} glib-networking{a} glib-networking-common{a} glib-networking-services{a} groff-base{a} gsettings-desktop-schemas{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} imagemagick{a} imagemagick-6-common{a} imagemagick-6.q16{a} intltool-debian{a} latexmk{a} lib32gcc1{a} lib32stdc++6{a} libapparmor1{a} libarchive-zip-perl{a} libarchive13{a} libargon2-1{a} libatk-bridge2.0-0{a} libatk1.0-0{a} libatk1.0-data{a} libatspi2.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libblas3{a} libboost-atomic1.67-dev{a} libboost-atomic1.67.0{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-date-time1.67-dev{a} libboost-date-time1.67.0{a} libboost-dev{a} libboost-python-dev{a} libboost-python1.67-dev{a} libboost-python1.67.0{a} libboost-regex-dev{a} libboost-regex1.67-dev{a} libboost-regex1.67.0{a} libboost-serialization1.67-dev{a} libboost-serialization1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost-thread-dev{a} libboost-thread1.67-dev{a} libboost-thread1.67.0{a} libboost1.67-dev{a} libbrotli1{a} libbsd0{a} libc6-i386{a} libcairo-gobject2{a} libcairo2{a} libcap2{a} libclang-common-7-dev{a} libclang1-6.0{a} libclang1-7{a} libcolord2{a} libcroco3{a} libcryptsetup12{a} libcups2{a} libcupsimage2{a} libcurl4{a} libdatrie1{a} libdbus-1-3{a} libdconf1{a} libde265-0{a} libdevmapper1.02.1{a} libedit2{a} libelf1{a} libepoxy0{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfftw3-double3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgc1c2{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-common{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libgtk-3-0{a} libgtk-3-common{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libheif1{a} libice6{a} libicu-dev{a} libicu63{a} libidn11{a} libijs-0.35{a} libimagequant0{a} libip4tc0{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-c3{a} libjson-glib-1.0-0{a} libjson-glib-1.0-common{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkmod2{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm6.0{a} libllvm7{a} liblqr-1-0{a} libltdl7{a} liblua5.1-0{a} libmagic-mgc{a} libmagic1{a} libmagickcore-6.q16-6{a} libmagickwand-6.q16-6{a} libmpdec2{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnuma1{a} libobjc-8-dev{a} libobjc4{a} libopenjp2-7{a} libpam-systemd{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libpq-dev{a} libpq5{a} libprocps7{a} libproxy1v5{a} libpsl5{a} libptexenc1{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librest-0.7-0{a} librhash0{a} librsvg2-2{a} librsvg2-bin{a} librsvg2-common{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libschroedinger-coordgenlibs-dev{a} libschroedinger-coordgenlibs1{a} libschroedinger-maeparser-dev{a} libschroedinger-maeparser1{a} libsigsegv2{a} libsm6{a} libsoup-gnome2.4-1{a} libsoup2.4-1{a} libsqlite3-dev{a} libssh2-1{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff5{a} libtinfo-dev{a} libtool{a} libuchardet0{a} libuv1{a} libwayland-client0{a} libwayland-cursor0{a} libwayland-egl1{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libwoff1{a} libx11-6{a} libx11-data{a} libx265-165{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxkbcommon0{a} libxml2{a} libxmu6{a} libxpm4{a} libxrandr2{a} libxrender1{a} libxt6{a} libxxhash0{a} libyaml-0-2{a} libzzip-0-13{a} llvm-7{a} llvm-7-dev{a} llvm-7-runtime{a} lsb-base{a} lsb-release{a} m4{a} man-db{a} mime-support{a} netbase{a} openssl{a} pandoc{a} pandoc-data{a} po-debconf{a} poppler-data{a} postgresql-client-common{a} postgresql-common{a} postgresql-server-dev-11{a} postgresql-server-dev-all{a} preview-latex-style{a} procps{a} python{a} python-babel-localedata{a} python-dateutil{a} python-dev{a} python-minimal{a} python-numpy{a} python-pandas{a} python-pandas-lib{a} python-pil{a} python-pkg-resources{a} python-six{a} python-tz{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-commonmark-bkrs{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-recommonmark{a} python3-requests{a} python3-roman{a} python3-six{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} sgml-base{a} shared-mime-info{a} sphinx-common{a} ssl-cert{a} systemd{a} systemd-sysv{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-generic-extra{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} xkb-data{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: at-spi2-core atril curl evince fonts-droid-fallback ghostscript gsfonts gv javascript-common krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libfl-dev libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk-3-bin libltdl-dev libmagickcore-6.q16-6-extra libmail-sendmail-perl libnet-dbus-perl libnss-systemd libomp-7-dev libsasl2-modules libx11-protocol-perl lmodern logrotate lynx mupdf netpbm okular psmisc publicsuffix python-bs4 python-html5lib python-lxml python-matplotlib python-numexpr python-olefile python-openpyxl python-scipy python-statsmodels python-tables python-xlrd python-xlwt python3-pil ruby tex-gyre tipa tk viewpdf.app wget x11-utils x11-xserver-utils xdg-user-dirs xpdf zathura-pdf-poppler zathura-ps 0 packages upgraded, 359 newly installed, 0 to remove and 0 not upgraded. Need to get 428 MB of archives. After unpacking 1741 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libapparmor1 amd64 2.13.2-10 [94.7 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 libcap2 amd64 1:2.25-2 [17.6 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libargon2-1 amd64 0~20171227-0.2 [19.6 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 dmsetup amd64 2:1.02.155-3 [90.8 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libdevmapper1.02.1 amd64 2:1.02.155-3 [141 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 libjson-c3 amd64 0.12.1+ds-2+deb10u1 [27.3 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libcryptsetup12 amd64 2:2.1.0-5+deb10u2 [193 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libidn11 amd64 1.33-2.2 [116 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libip4tc0 amd64 1.8.2-4 [70.2 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libkmod2 amd64 26-1 [52.7 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 systemd amd64 241-7~deb10u8 [3496 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 systemd-sysv amd64 241-7~deb10u8 [100 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 flex amd64 2.6.4-6.2 [456 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libfftw3-double3 amd64 3.3.8-2 [733 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libde265-0 amd64 1.0.3-1+b1 [240 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libx265-165 amd64 2.9-4 [1041 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libheif1 amd64 1.3.2-2~deb10u1 [127 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 liblqr-1-0 amd64 0.4.2-2.1 [29.1 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libopenjp2-7 amd64 2.3.0-2+deb10u2 [158 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libwebpmux3 amd64 0.6.1-2+deb10u1 [97.8 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 imagemagick-6-common all 8:6.9.10.23+dfsg-2.1+deb10u1 [200 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libmagickcore-6.q16-6 amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [1786 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libmagickwand-6.q16-6 amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [446 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 poppler-data all 0.4.9-2 [1473 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 sgml-base all 1.29 [14.8 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 tex-common all 6.11 [53.1 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 dbus amd64 1.12.20-0+deb10u1 [236 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libpam-systemd amd64 241-7~deb10u8 [209 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [316 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-0 amd64 2.38.1+dfsg-1 [177 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 gtk-update-icon-cache amd64 3.24.5-1 [81.7 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 librsvg2-2 amd64 2.44.10-2.1 [1280 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 librsvg2-common amd64 2.44.10-2.1 [23.3 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 adwaita-icon-theme all 3.30.1-1 [11.7 MB] Get: 117 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 binfmt-support amd64 2.2.0-2 [70.0 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libbison-dev amd64 2:3.3.2.dfsg-1 [500 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 bison amd64 2:3.3.2.dfsg-1 [871 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 128 http://deb.debian.org/debian buster/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libobjc4 amd64 8.3.0-6 [50.3 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libobjc-8-dev amd64 8.3.0-6 [226 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libc6-i386 amd64 2.28-10 [2872 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 lib32gcc1 amd64 1:8.3.0-6 [47.9 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 lib32stdc++6 amd64 8.3.0-6 [407 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libclang-common-7-dev amd64 1:7.0.1-8+deb10u2 [3158 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libclang1-7 amd64 1:7.0.1-8+deb10u2 [5997 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 clang-7 amd64 1:7.0.1-8+deb10u2 [7891 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 dbus-user-session amd64 1.12.20-0+deb10u1 [94.5 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 libdconf1 amd64 0.30.1-2 [40.7 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 dconf-service amd64 0.30.1-2 [36.4 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 dconf-gsettings-backend amd64 0.30.1-2 [28.9 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 dctrl-tools amd64 2.24-3 [103 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 distro-info-data all 0.41+deb10u4 [6880 B] Get: 177 http://deb.debian.org/debian buster/main amd64 xml-core all 0.18+nmu1 [23.8 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 docutils-common all 0.14+dfsg-4 [167 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 libllvm6.0 amd64 1:6.0.1-10 [14.7 MB] Get: 180 http://deb.debian.org/debian buster/main amd64 libclang1-6.0 amd64 1:6.0.1-10 [6951 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 libproxy1v5 amd64 0.4.15-5+deb10u1 [56.1 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 glib-networking-common all 2.58.0-2+deb10u2 [59.5 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 glib-networking-services amd64 2.58.0-2+deb10u2 [13.7 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 gsettings-desktop-schemas all 3.28.1-1 [529 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 glib-networking amd64 2.58.0-2+deb10u2 [54.6 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u1 [189 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 imagemagick-6.q16 amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [580 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 imagemagick amd64 8:6.9.10.23+dfsg-2.1+deb10u1 [156 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get: 193 http://deb.debian.org/debian buster/main amd64 libkpathsea6 amd64 2018.20181218.49446-1 [167 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 libptexenc1 amd64 2018.20181218.49446-1 [61.0 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 libsynctex2 amd64 2018.20181218.49446-1 [80.5 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 libtexlua52 amd64 2018.20181218.49446-1 [112 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 libtexlua53 amd64 2018.20181218.49446-1 [126 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 libtexluajit2 amd64 2018.20181218.49446-1 [256 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 libgs9-common all 9.27~dfsg-2+deb10u4 [5136 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 libcupsimage2 amd64 2.2.10-6+deb10u4 [133 kB] Get: 207 http://deb.debian.org/debian buster/main amd64 libijs-0.35 amd64 0.35-14 [18.3 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 libjbig2dec0 amd64 0.16-1 [62.0 kB] Get: 209 http://deb.debian.org/debian buster/main amd64 libgs9 amd64 9.27~dfsg-2+deb10u4 [2195 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 libharfbuzz-icu0 amd64 2.3.1-1 [834 kB] Get: 211 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 libpotrace0 amd64 1.15-1 [26.3 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 libteckit0 amd64 2.5.8+ds2-5 [318 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 libwoff1 amd64 1.0.2-1 [43.2 kB] Get: 217 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get: 221 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 libxxhash0 amd64 0.6.5-2 [7156 B] Get: 223 http://deb.debian.org/debian buster/main amd64 libzzip-0-13 amd64 0.13.62-3.2 [55.4 kB] Get: 224 http://deb.debian.org/debian buster/main amd64 texlive-binaries amd64 2018.20181218.49446-1 [11.3 MB] Get: 225 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 texlive-base all 2018.20190227-2 [19.7 MB] Get: 227 http://deb.debian.org/debian buster/main amd64 texlive-latex-base all 2018.20190227-2 [984 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 latexmk all 1:4.61-0.1 [390 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 libatk1.0-data all 2.30.0-2 [145 kB] Get: 230 http://deb.debian.org/debian buster/main amd64 libatk1.0-0 amd64 2.30.0-2 [50.6 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 libatspi2.0-0 amd64 2.30.0-7 [65.0 kB] Get: 232 http://deb.debian.org/debian buster/main amd64 libatk-bridge2.0-0 amd64 2.30.0-5 [61.6 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 libboost-atomic1.67.0 amd64 1.67.0-13+deb10u1 [226 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 libboost-atomic1.67-dev amd64 1.67.0-13+deb10u1 [225 kB] Get: 238 http://deb.debian.org/debian buster/main amd64 libboost-chrono1.67.0 amd64 1.67.0-13+deb10u1 [234 kB] Get: 239 http://deb.debian.org/debian buster/main amd64 libboost-chrono1.67-dev amd64 1.67.0-13+deb10u1 [236 kB] Get: 240 http://deb.debian.org/debian buster/main amd64 libboost-date-time1.67.0 amd64 1.67.0-13+deb10u1 [239 kB] Get: 241 http://deb.debian.org/debian buster/main amd64 libboost-serialization1.67.0 amd64 1.67.0-13+deb10u1 [319 kB] Get: 242 http://deb.debian.org/debian buster/main amd64 libboost-serialization1.67-dev amd64 1.67.0-13+deb10u1 [359 kB] Get: 243 http://deb.debian.org/debian buster/main amd64 libboost-date-time1.67-dev amd64 1.67.0-13+deb10u1 [248 kB] Get: 244 http://deb.debian.org/debian buster/main amd64 libboost-dev amd64 1.67.0.1 [3864 B] Get: 245 http://deb.debian.org/debian buster/main amd64 libboost-python1.67.0 amd64 1.67.0-13+deb10u1 [328 kB] Get: 246 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 247 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 248 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 249 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 250 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 251 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 252 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 253 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 254 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 255 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 256 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 257 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 258 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 259 http://deb.debian.org/debian buster/main amd64 libboost-python1.67-dev amd64 1.67.0-13+deb10u1 [335 kB] Get: 260 http://deb.debian.org/debian buster/main amd64 libboost-python-dev amd64 1.67.0.1 [3948 B] Get: 261 http://deb.debian.org/debian buster/main amd64 libboost-regex1.67.0 amd64 1.67.0-13+deb10u1 [485 kB] Get: 262 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u1 [9186 kB] Get: 263 http://deb.debian.org/debian buster/main amd64 libboost-regex1.67-dev amd64 1.67.0-13+deb10u1 [539 kB] Get: 264 http://deb.debian.org/debian buster/main amd64 libboost-regex-dev amd64 1.67.0.1 [3916 B] Get: 265 http://deb.debian.org/debian buster/main amd64 libboost-system1.67-dev amd64 1.67.0-13+deb10u1 [231 kB] Get: 266 http://deb.debian.org/debian buster/main amd64 libboost-system-dev amd64 1.67.0.1 [3788 B] Get: 267 http://deb.debian.org/debian buster/main amd64 libboost-thread1.67.0 amd64 1.67.0-13+deb10u1 [268 kB] Get: 268 http://deb.debian.org/debian buster/main amd64 libboost-thread1.67-dev amd64 1.67.0-13+deb10u1 [270 kB] Get: 269 http://deb.debian.org/debian buster/main amd64 libboost-thread-dev amd64 1.67.0.1 [3672 B] Get: 270 http://deb.debian.org/debian buster/main amd64 libcairo-gobject2 amd64 1.16.0-4+deb10u1 [125 kB] Get: 271 http://deb.debian.org/debian buster/main amd64 libcolord2 amd64 1.4.3-4 [141 kB] Get: 272 http://deb.debian.org/debian buster/main amd64 libepoxy0 amd64 1.5.3-0.1 [190 kB] Get: 273 http://deb.debian.org/debian buster/main amd64 libffi-dev amd64 3.2.1-9 [156 kB] Get: 274 http://deb.debian.org/debian buster/main amd64 libjson-glib-1.0-common all 1.4.4-2 [52.3 kB] Get: 275 http://deb.debian.org/debian buster/main amd64 libjson-glib-1.0-0 amd64 1.4.4-2 [61.2 kB] Get: 276 http://deb.debian.org/debian buster/main amd64 libsoup2.4-1 amd64 2.64.2-2 [253 kB] Get: 277 http://deb.debian.org/debian buster/main amd64 libsoup-gnome2.4-1 amd64 2.64.2-2 [18.0 kB] Get: 278 http://deb.debian.org/debian buster/main amd64 librest-0.7-0 amd64 0.8.1-1 [33.7 kB] Get: 279 http://deb.debian.org/debian buster/main amd64 libwayland-client0 amd64 1.16.0-1 [26.4 kB] Get: 280 http://deb.debian.org/debian buster/main amd64 libwayland-cursor0 amd64 1.16.0-1 [14.1 kB] Get: 281 http://deb.debian.org/debian buster/main amd64 libwayland-egl1 amd64 1.16.0-1 [8204 B] Get: 282 http://deb.debian.org/debian buster/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get: 283 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 284 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get: 285 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 286 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get: 287 http://deb.debian.org/debian buster/main amd64 xkb-data all 2.26-2 [681 kB] Get: 288 http://deb.debian.org/debian buster/main amd64 libxkbcommon0 amd64 0.8.2-1 [123 kB] Get: 289 http://deb.debian.org/debian buster/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get: 290 http://deb.debian.org/debian buster/main amd64 libgtk-3-common all 3.24.5-1 [3678 kB] Get: 291 http://deb.debian.org/debian buster/main amd64 libgtk-3-0 amd64 3.24.5-1 [2580 kB] Get: 292 http://deb.debian.org/debian buster/main amd64 libimagequant0 amd64 2.12.2-1.1 [32.5 kB] Get: 293 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 294 http://deb.debian.org/debian buster/main amd64 libjs-underscore all 1.9.1~dfsg-1+deb10u1 [100.0 kB] Get: 295 http://deb.debian.org/debian buster/main amd64 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 296 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 297 http://deb.debian.org/debian buster/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get: 298 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get: 299 http://deb.debian.org/debian buster/main amd64 libpq5 amd64 11.13-0+deb10u1 [170 kB] Get: 300 http://deb.debian.org/debian buster/main amd64 libpq-dev amd64 11.13-0+deb10u1 [167 kB] Get: 301 http://deb.debian.org/debian buster/main amd64 librsvg2-bin amd64 2.44.10-2.1 [35.0 kB] Get: 302 http://deb.debian.org/debian buster/main amd64 libschroedinger-maeparser1 amd64 1.0.1-4 [45.1 kB] Get: 303 http://deb.debian.org/debian buster/main amd64 libschroedinger-coordgenlibs1 amd64 1.1-3 [177 kB] Get: 304 http://deb.debian.org/debian buster/main amd64 libschroedinger-coordgenlibs-dev amd64 1.1-3 [27.8 kB] Get: 305 http://deb.debian.org/debian buster/main amd64 libschroedinger-maeparser-dev amd64 1.0.1-4 [10.6 kB] Get: 306 http://deb.debian.org/debian buster/main amd64 libsqlite3-dev amd64 3.27.2-3+deb10u1 [787 kB] Get: 307 http://deb.debian.org/debian buster/main amd64 libtinfo-dev amd64 6.1+20181013-2+deb10u2 [940 B] Get: 308 http://deb.debian.org/debian buster/main amd64 libwebpdemux2 amd64 0.6.1-2+deb10u1 [87.6 kB] Get: 309 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get: 310 http://deb.debian.org/debian buster/main amd64 llvm-7-runtime amd64 1:7.0.1-8+deb10u2 [190 kB] Get: 311 http://deb.debian.org/debian buster/main amd64 llvm-7 amd64 1:7.0.1-8+deb10u2 [4554 kB] Get: 312 http://deb.debian.org/debian buster/main amd64 llvm-7-dev amd64 1:7.0.1-8+deb10u2 [21.3 MB] Get: 313 http://deb.debian.org/debian buster/main amd64 lsb-release all 10.2019051400 [27.5 kB] Get: 314 http://deb.debian.org/debian buster/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get: 315 http://deb.debian.org/debian buster/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] Get: 316 http://deb.debian.org/debian buster/main amd64 postgresql-client-common all 200+deb10u4 [85.1 kB] Get: 317 http://deb.debian.org/debian buster/main amd64 ssl-cert all 1.0.39 [20.8 kB] Get: 318 http://deb.debian.org/debian buster/main amd64 postgresql-common all 200+deb10u4 [225 kB] Get: 319 http://deb.debian.org/debian buster/main amd64 postgresql-server-dev-11 amd64 11.13-0+deb10u1 [941 kB] Get: 320 http://deb.debian.org/debian buster/main amd64 postgresql-server-dev-all all 200+deb10u4 [74.4 kB] Get: 321 http://deb.debian.org/debian buster/main amd64 preview-latex-style all 11.91-2 [201 kB] Get: 322 http://deb.debian.org/debian buster/main amd64 python-babel-localedata all 2.6.0+dfsg.1-1 [4083 kB] Get: 323 http://deb.debian.org/debian buster/main amd64 python-six all 1.12.0-1 [15.7 kB] Get: 324 http://deb.debian.org/debian buster/main amd64 python-dateutil all 2.7.3-3 [76.8 kB] Get: 325 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 326 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 327 http://deb.debian.org/debian buster/main amd64 python-tz all 2019.1-1 [33.6 kB] Get: 328 http://deb.debian.org/debian buster/main amd64 python-pandas-lib amd64 0.23.3+dfsg-3 [3430 kB] Get: 329 http://deb.debian.org/debian buster/main amd64 python-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 330 http://deb.debian.org/debian buster/main amd64 python-pil amd64 5.4.1-2+deb10u2 [395 kB] Get: 331 http://deb.debian.org/debian buster/main amd64 python3-alabaster all 0.7.8-1 [18.4 kB] Get: 332 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 333 http://deb.debian.org/debian buster/main amd64 python3-tz all 2019.1-1 [27.1 kB] Get: 334 http://deb.debian.org/debian buster/main amd64 python3-babel all 2.6.0+dfsg.1-1 [96.7 kB] Get: 335 http://deb.debian.org/debian buster/main amd64 python3-certifi all 2018.8.24-1 [140 kB] Get: 336 http://deb.debian.org/debian buster/main amd64 python3-chardet all 3.0.4-3 [80.5 kB] Get: 337 http://deb.debian.org/debian buster/main amd64 python3-commonmark-bkrs all 0.5.4+ds-2 [28.2 kB] Get: 338 http://deb.debian.org/debian buster/main amd64 python3-roman all 2.0.0-3 [8768 B] Get: 339 http://deb.debian.org/debian buster/main amd64 python3-docutils all 0.14+dfsg-4 [378 kB] Get: 340 http://deb.debian.org/debian buster/main amd64 python3-idna all 2.6-1 [34.3 kB] Get: 341 http://deb.debian.org/debian buster/main amd64 python3-imagesize all 1.0.0-1 [4960 B] Get: 342 http://deb.debian.org/debian buster/main amd64 python3-markupsafe amd64 1.1.0-1 [14.8 kB] Get: 343 http://deb.debian.org/debian buster/main amd64 python3-jinja2 all 2.10-2 [106 kB] Get: 344 http://deb.debian.org/debian buster/main amd64 python3-pyparsing all 2.2.0+dfsg1-2 [89.6 kB] Get: 345 http://deb.debian.org/debian buster/main amd64 python3-six all 1.12.0-1 [15.7 kB] Get: 346 http://deb.debian.org/debian buster/main amd64 python3-packaging all 19.0-1 [20.5 kB] Get: 347 http://deb.debian.org/debian buster/main amd64 python3-pygments all 2.3.1+dfsg-1+deb10u2 [594 kB] Get: 348 http://deb.debian.org/debian buster/main amd64 python3-recommonmark all 0.4.0+ds-5 [14.9 kB] Get: 349 http://deb.debian.org/debian buster/main amd64 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 350 http://deb.debian.org/debian buster/main amd64 python3-requests all 2.21.0-1 [66.9 kB] Get: 351 http://deb.debian.org/debian buster/main amd64 sphinx-common all 1.8.4-1 [500 kB] Get: 352 http://deb.debian.org/debian buster/main amd64 python3-sphinx all 1.8.4-1 [481 kB] Get: 353 http://deb.debian.org/debian buster/main amd64 rapidjson-dev all 1.1.0+dfsg2-5 [98.7 kB] Get: 354 http://deb.debian.org/debian buster/main amd64 texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 355 http://deb.debian.org/debian buster/main amd64 texlive-plain-generic all 2018.20190227-2 [24.3 MB] Get: 356 http://deb.debian.org/debian buster/main amd64 texlive-generic-extra all 2018.20190227-2 [32.2 kB] Get: 357 http://deb.debian.org/debian buster/main amd64 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 358 http://deb.debian.org/debian buster/main amd64 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 359 http://deb.debian.org/debian buster/main amd64 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Fetched 428 MB in 5s (83.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libapparmor1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libapparmor1_2.13.2-10_amd64.deb ... Unpacking libapparmor1:amd64 (2.13.2-10) ... Selecting previously unselected package libcap2:amd64. Preparing to unpack .../01-libcap2_1%3a2.25-2_amd64.deb ... Unpacking libcap2:amd64 (1:2.25-2) ... Selecting previously unselected package libargon2-1:amd64. Preparing to unpack .../02-libargon2-1_0~20171227-0.2_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.2) ... Selecting previously unselected package dmsetup. Preparing to unpack .../03-dmsetup_2%3a1.02.155-3_amd64.deb ... Unpacking dmsetup (2:1.02.155-3) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../04-libdevmapper1.02.1_2%3a1.02.155-3_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.155-3) ... Selecting previously unselected package libjson-c3:amd64. Preparing to unpack .../05-libjson-c3_0.12.1+ds-2+deb10u1_amd64.deb ... Unpacking libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../06-libssl1.1_1.1.1d-0+deb10u7_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../07-libcryptsetup12_2%3a2.1.0-5+deb10u2_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.1.0-5+deb10u2) ... Selecting previously unselected package libidn11:amd64. Preparing to unpack .../08-libidn11_1.33-2.2_amd64.deb ... Unpacking libidn11:amd64 (1.33-2.2) ... Selecting previously unselected package libip4tc0:amd64. Preparing to unpack .../09-libip4tc0_1.8.2-4_amd64.deb ... Unpacking libip4tc0:amd64 (1.8.2-4) ... Selecting previously unselected package libkmod2:amd64. Preparing to unpack .../10-libkmod2_26-1_amd64.deb ... Unpacking libkmod2:amd64 (26-1) ... Selecting previously unselected package systemd. Preparing to unpack .../11-systemd_241-7~deb10u8_amd64.deb ... Unpacking systemd (241-7~deb10u8) ... Setting up libapparmor1:amd64 (2.13.2-10) ... Setting up libcap2:amd64 (1:2.25-2) ... Setting up libargon2-1:amd64 (0~20171227-0.2) ... Setting up libjson-c3:amd64 (0.12.1+ds-2+deb10u1) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libidn11:amd64 (1.33-2.2) ... Setting up libip4tc0:amd64 (1.8.2-4) ... Setting up libkmod2:amd64 (26-1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.155-3) ... Setting up libcryptsetup12:amd64 (2:2.1.0-5+deb10u2) ... Setting up systemd (241-7~deb10u8) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service -> /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target -> /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/dbus-org.freedesktop.timesync1.service -> /lib/systemd/system/systemd-timesyncd.service. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-timesyncd.service -> /lib/systemd/system/systemd-timesyncd.service. Initializing machine ID from KVM UUID. Setting up dmsetup (2:1.02.155-3) ... Selecting previously unselected package systemd-sysv. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20050 files and directories currently installed.) Preparing to unpack .../00-systemd-sysv_241-7~deb10u8_amd64.deb ... Unpacking systemd-sysv (241-7~deb10u8) ... Selecting previously unselected package libbsd0:amd64. Preparing to unpack .../01-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../03-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../04-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../05-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../06-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../07-libpython2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../08-python2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../09-python2-minimal_2.7.16-1_amd64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../10-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../14-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:amd64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython2-stdlib:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21519 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21552 files and directories currently installed.) Preparing to unpack .../00-python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../01-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../02-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package flex. Preparing to unpack .../03-flex_2.6.4-6.2_amd64.deb ... Unpacking flex (2.6.4-6.2) ... Selecting previously unselected package libfftw3-double3:amd64. Preparing to unpack .../04-libfftw3-double3_3.3.8-2_amd64.deb ... Unpacking libfftw3-double3:amd64 (3.3.8-2) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../05-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../06-libfreetype6_2.9.1-3+deb10u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../08-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../09-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../10-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../11-libfontconfig1_2.13.1-2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2) ... Selecting previously unselected package libde265-0:amd64. Preparing to unpack .../12-libde265-0_1.0.3-1+b1_amd64.deb ... Unpacking libde265-0:amd64 (1.0.3-1+b1) ... Selecting previously unselected package libnuma1:amd64. Preparing to unpack .../13-libnuma1_2.0.12-1_amd64.deb ... Unpacking libnuma1:amd64 (2.0.12-1) ... Selecting previously unselected package libx265-165:amd64. Preparing to unpack .../14-libx265-165_2.9-4_amd64.deb ... Unpacking libx265-165:amd64 (2.9-4) ... Selecting previously unselected package libheif1:amd64. Preparing to unpack .../15-libheif1_1.3.2-2~deb10u1_amd64.deb ... Unpacking libheif1:amd64 (1.3.2-2~deb10u1) ... Selecting previously unselected package libjbig0:amd64. Preparing to unpack .../16-libjbig0_2.1-3.1+b2_amd64.deb ... Unpacking libjbig0:amd64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../17-libjpeg62-turbo_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../18-liblcms2-2_2.9-3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../19-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package liblqr-1-0:amd64. Preparing to unpack .../20-liblqr-1-0_0.4.2-2.1_amd64.deb ... Unpacking liblqr-1-0:amd64 (0.4.2-2.1) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../21-libltdl7_2.4.6-9_amd64.deb ... Unpacking libltdl7:amd64 (2.4.6-9) ... Selecting previously unselected package libopenjp2-7:amd64. Preparing to unpack .../22-libopenjp2-7_2.3.0-2+deb10u2_amd64.deb ... Unpacking libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Selecting previously unselected package libwebp6:amd64. Preparing to unpack .../23-libwebp6_0.6.1-2+deb10u1_amd64.deb ... Unpacking libwebp6:amd64 (0.6.1-2+deb10u1) ... Selecting previously unselected package libtiff5:amd64. Preparing to unpack .../24-libtiff5_4.1.0+git191117-2~deb10u2_amd64.deb ... Unpacking libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Selecting previously unselected package libwebpmux3:amd64. Preparing to unpack .../25-libwebpmux3_0.6.1-2+deb10u1_amd64.deb ... Unpacking libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../26-libxau6_1%3a1.0.8-1+b2_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../27-libxdmcp6_1%3a1.1.2-3_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../28-libxcb1_1.13.1-2_amd64.deb ... Unpacking libxcb1:amd64 (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../29-libx11-data_2%3a1.6.7-1+deb10u2_all.deb ... Unpacking libx11-data (2:1.6.7-1+deb10u2) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../30-libx11-6_2%3a1.6.7-1+deb10u2_amd64.deb ... Unpacking libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../31-libxext6_2%3a1.3.3-1+b2_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.3-1+b2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../32-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../33-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package imagemagick-6-common. Preparing to unpack .../34-imagemagick-6-common_8%3a6.9.10.23+dfsg-2.1+deb10u1_all.deb ... Unpacking imagemagick-6-common (8:6.9.10.23+dfsg-2.1+deb10u1) ... Selecting previously unselected package libmagickcore-6.q16-6:amd64. Preparing to unpack .../35-libmagickcore-6.q16-6_8%3a6.9.10.23+dfsg-2.1+deb10u1_amd64.deb ... Unpacking libmagickcore-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Selecting previously unselected package libmagickwand-6.q16-6:amd64. Preparing to unpack .../36-libmagickwand-6.q16-6_8%3a6.9.10.23+dfsg-2.1+deb10u1_amd64.deb ... Unpacking libmagickwand-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../37-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package libpython3.7-minimal:amd64. Preparing to unpack .../38-libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../39-python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23397 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 23809 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.29_all.deb ... Unpacking sgml-base (1.29) ... Selecting previously unselected package tex-common. Preparing to unpack .../002-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package netbase. Preparing to unpack .../003-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../004-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../005-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../006-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../008-libdbus-1-3_1.12.20-0+deb10u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Selecting previously unselected package dbus. Preparing to unpack .../009-dbus_1.12.20-0+deb10u1_amd64.deb ... Unpacking dbus (1.12.20-0+deb10u1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../011-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libpam-systemd:amd64. Preparing to unpack .../014-libpam-systemd_241-7~deb10u8_amd64.deb ... Unpacking libpam-systemd:amd64 (241-7~deb10u8) ... Selecting previously unselected package hicolor-icon-theme. Preparing to unpack .../015-hicolor-icon-theme_0.17-2_all.deb ... Unpacking hicolor-icon-theme (0.17-2) ... Selecting previously unselected package shared-mime-info. Preparing to unpack .../016-shared-mime-info_1.10-1_amd64.deb ... Unpacking shared-mime-info (1.10-1) ... Selecting previously unselected package libgdk-pixbuf2.0-common. Preparing to unpack .../017-libgdk-pixbuf2.0-common_2.38.1+dfsg-1_all.deb ... Unpacking libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Selecting previously unselected package libgdk-pixbuf2.0-0:amd64. Preparing to unpack .../018-libgdk-pixbuf2.0-0_2.38.1+dfsg-1_amd64.deb ... Unpacking libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Selecting previously unselected package gtk-update-icon-cache. Preparing to unpack .../019-gtk-update-icon-cache_3.24.5-1_amd64.deb ... No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. Unpacking gtk-update-icon-cache (3.24.5-1) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../020-libpixman-1-0_0.36.0-1_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.36.0-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../021-libxcb-render0_1.13.1-2_amd64.deb ... Unpacking libxcb-render0:amd64 (1.13.1-2) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../022-libxcb-shm0_1.13.1-2_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.13.1-2) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../023-libxrender1_1%3a0.9.10-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../024-libcairo2_1.16.0-4+deb10u1_amd64.deb ... Unpacking libcairo2:amd64 (1.16.0-4+deb10u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../025-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../026-fontconfig_2.13.1-2_amd64.deb ... Unpacking fontconfig (2.13.1-2) ... Selecting previously unselected package libfribidi0:amd64. Preparing to unpack .../027-libfribidi0_1.0.5-3.1+deb10u1_amd64.deb ... Unpacking libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../028-libthai-data_0.1.28-2_all.deb ... Unpacking libthai-data (0.1.28-2) ... Selecting previously unselected package libdatrie1:amd64. Preparing to unpack .../029-libdatrie1_0.2.12-2_amd64.deb ... Unpacking libdatrie1:amd64 (0.2.12-2) ... Selecting previously unselected package libthai0:amd64. Preparing to unpack .../030-libthai0_0.1.28-2_amd64.deb ... Unpacking libthai0:amd64 (0.1.28-2) ... Selecting previously unselected package libpango-1.0-0:amd64. Preparing to unpack .../031-libpango-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../032-libgraphite2-3_1.3.13-7_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-7) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../033-libharfbuzz0b_2.3.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.3.1-1) ... Selecting previously unselected package libpangoft2-1.0-0:amd64. Preparing to unpack .../034-libpangoft2-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Selecting previously unselected package libpangocairo-1.0-0:amd64. Preparing to unpack .../035-libpangocairo-1.0-0_1.42.4-8~deb10u1_amd64.deb ... Unpacking libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Selecting previously unselected package librsvg2-2:amd64. Preparing to unpack .../036-librsvg2-2_2.44.10-2.1_amd64.deb ... Unpacking librsvg2-2:amd64 (2.44.10-2.1) ... Selecting previously unselected package librsvg2-common:amd64. Preparing to unpack .../037-librsvg2-common_2.44.10-2.1_amd64.deb ... Unpacking librsvg2-common:amd64 (2.44.10-2.1) ... Selecting previously unselected package adwaita-icon-theme. Preparing to unpack .../038-adwaita-icon-theme_3.30.1-1_all.deb ... Unpacking adwaita-icon-theme (3.30.1-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../039-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../040-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../041-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../042-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../043-binfmt-support_2.2.0-2_amd64.deb ... Unpacking binfmt-support (2.2.0-2) ... Selecting previously unselected package libbison-dev:amd64. Preparing to unpack .../044-libbison-dev_2%3a3.3.2.dfsg-1_amd64.deb ... Unpacking libbison-dev:amd64 (2:3.3.2.dfsg-1) ... Selecting previously unselected package bison. Preparing to unpack .../045-bison_2%3a3.3.2.dfsg-1_amd64.deb ... Unpacking bison (2:3.3.2.dfsg-1) ... Selecting previously unselected package openssl. Preparing to unpack .../046-openssl_1.1.1d-0+deb10u7_amd64.deb ... Unpacking openssl (1.1.1d-0+deb10u7) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../047-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package libedit2:amd64. Preparing to unpack .../048-libedit2_3.1-20181209-1_amd64.deb ... Unpacking libedit2:amd64 (3.1-20181209-1) ... Selecting previously unselected package libllvm7:amd64. Preparing to unpack .../049-libllvm7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Selecting previously unselected package libgc1c2:amd64. Preparing to unpack .../050-libgc1c2_1%3a7.6.4-0.4_amd64.deb ... Unpacking libgc1c2:amd64 (1:7.6.4-0.4) ... Selecting previously unselected package libobjc4:amd64. Preparing to unpack .../051-libobjc4_8.3.0-6_amd64.deb ... Unpacking libobjc4:amd64 (8.3.0-6) ... Selecting previously unselected package libobjc-8-dev:amd64. Preparing to unpack .../052-libobjc-8-dev_8.3.0-6_amd64.deb ... Unpacking libobjc-8-dev:amd64 (8.3.0-6) ... Selecting previously unselected package libc6-i386. Preparing to unpack .../053-libc6-i386_2.28-10_amd64.deb ... Unpacking libc6-i386 (2.28-10) ... Selecting previously unselected package lib32gcc1. Preparing to unpack .../054-lib32gcc1_1%3a8.3.0-6_amd64.deb ... Unpacking lib32gcc1 (1:8.3.0-6) ... Selecting previously unselected package lib32stdc++6. Preparing to unpack .../055-lib32stdc++6_8.3.0-6_amd64.deb ... Unpacking lib32stdc++6 (8.3.0-6) ... Selecting previously unselected package libclang-common-7-dev. Preparing to unpack .../056-libclang-common-7-dev_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libclang-common-7-dev (1:7.0.1-8+deb10u2) ... Selecting previously unselected package libclang1-7. Preparing to unpack .../057-libclang1-7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking libclang1-7 (1:7.0.1-8+deb10u2) ... Selecting previously unselected package clang-7. Preparing to unpack .../058-clang-7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking clang-7 (1:7.0.1-8+deb10u2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../059-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../060-libarchive13_3.3.3-4+deb10u1_amd64.deb ... Unpacking libarchive13:amd64 (3.3.3-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../061-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../062-libkrb5support0_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../063-libk5crypto3_1.17-3+deb10u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../064-libkrb5-3_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../065-libgssapi-krb5-2_1.17-3+deb10u3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../066-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../067-libsasl2-2_2.1.27+dfsg-1+deb10u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../068-libldap-common_2.4.47+dfsg-3+deb10u6_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u6) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../069-libldap-2.4-2_2.4.47+dfsg-3+deb10u6_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../070-libnghttp2-14_1.36.0-2+deb10u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../071-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../072-librtmp1_2.4+20151223.gitfa8646d.1-2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../073-libssh2-1_1.8.0-2.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../074-libcurl4_7.64.0-4+deb10u2_amd64.deb ... Unpacking libcurl4:amd64 (7.64.0-4+deb10u2) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../075-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../076-librhash0_1.3.8-1_amd64.deb ... Unpacking librhash0:amd64 (1.3.8-1) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../077-libuv1_1.24.1-1+deb10u1_amd64.deb ... Unpacking libuv1:amd64 (1.24.1-1+deb10u1) ... Selecting previously unselected package cmake. Preparing to unpack .../078-cmake_3.13.4-1_amd64.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package dbus-user-session. Preparing to unpack .../079-dbus-user-session_1.12.20-0+deb10u1_amd64.deb ... Unpacking dbus-user-session (1.12.20-0+deb10u1) ... Selecting previously unselected package libdconf1:amd64. Preparing to unpack .../080-libdconf1_0.30.1-2_amd64.deb ... Unpacking libdconf1:amd64 (0.30.1-2) ... Selecting previously unselected package dconf-service. Preparing to unpack .../081-dconf-service_0.30.1-2_amd64.deb ... Unpacking dconf-service (0.30.1-2) ... Selecting previously unselected package dconf-gsettings-backend:amd64. Preparing to unpack .../082-dconf-gsettings-backend_0.30.1-2_amd64.deb ... Unpacking dconf-gsettings-backend:amd64 (0.30.1-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../083-dctrl-tools_2.24-3_amd64.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libtool. Preparing to unpack .../084-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../085-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../086-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../087-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../088-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../089-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../090-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../091-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../092-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../093-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../094-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../095-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../096-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../097-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) ... Selecting previously unselected package distro-info-data. Preparing to unpack .../098-distro-info-data_0.41+deb10u4_all.deb ... Unpacking distro-info-data (0.41+deb10u4) ... Selecting previously unselected package xml-core. Preparing to unpack .../099-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../100-docutils-common_0.14+dfsg-4_all.deb ... Unpacking docutils-common (0.14+dfsg-4) ... Selecting previously unselected package libllvm6.0:amd64. Preparing to unpack .../101-libllvm6.0_1%3a6.0.1-10_amd64.deb ... Unpacking libllvm6.0:amd64 (1:6.0.1-10) ... Selecting previously unselected package libclang1-6.0:amd64. Preparing to unpack .../102-libclang1-6.0_1%3a6.0.1-10_amd64.deb ... Unpacking libclang1-6.0:amd64 (1:6.0.1-10) ... Selecting previously unselected package doxygen. Preparing to unpack .../103-doxygen_1.8.13-10_amd64.deb ... Unpacking doxygen (1.8.13-10) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../104-fonts-lmodern_2.004.5-6_all.deb ... Unpacking fonts-lmodern (2.004.5-6) ... Selecting previously unselected package libproxy1v5:amd64. Preparing to unpack .../105-libproxy1v5_0.4.15-5+deb10u1_amd64.deb ... Unpacking libproxy1v5:amd64 (0.4.15-5+deb10u1) ... Selecting previously unselected package glib-networking-common. Preparing to unpack .../106-glib-networking-common_2.58.0-2+deb10u2_all.deb ... Unpacking glib-networking-common (2.58.0-2+deb10u2) ... Selecting previously unselected package glib-networking-services. Preparing to unpack .../107-glib-networking-services_2.58.0-2+deb10u2_amd64.deb ... Unpacking glib-networking-services (2.58.0-2+deb10u2) ... Selecting previously unselected package gsettings-desktop-schemas. Preparing to unpack .../108-gsettings-desktop-schemas_3.28.1-1_all.deb ... Unpacking gsettings-desktop-schemas (3.28.1-1) ... Selecting previously unselected package glib-networking:amd64. Preparing to unpack .../109-glib-networking_2.58.0-2+deb10u2_amd64.deb ... Unpacking glib-networking:amd64 (2.58.0-2+deb10u2) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../110-icu-devtools_63.1-6+deb10u1_amd64.deb ... Unpacking icu-devtools (63.1-6+deb10u1) ... Selecting previously unselected package imagemagick-6.q16. Preparing to unpack .../111-imagemagick-6.q16_8%3a6.9.10.23+dfsg-2.1+deb10u1_amd64.deb ... Unpacking imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Selecting previously unselected package imagemagick. Preparing to unpack .../112-imagemagick_8%3a6.9.10.23+dfsg-2.1+deb10u1_amd64.deb ... Unpacking imagemagick (8:6.9.10.23+dfsg-2.1+deb10u1) ... Selecting previously unselected package libpaper1:amd64. Preparing to unpack .../113-libpaper1_1.1.28_amd64.deb ... Unpacking libpaper1:amd64 (1.1.28) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../114-libpaper-utils_1.1.28_amd64.deb ... Unpacking libpaper-utils (1.1.28) ... Selecting previously unselected package libkpathsea6:amd64. Preparing to unpack .../115-libkpathsea6_2018.20181218.49446-1_amd64.deb ... Unpacking libkpathsea6:amd64 (2018.20181218.49446-1) ... Selecting previously unselected package libptexenc1:amd64. Preparing to unpack .../116-libptexenc1_2018.20181218.49446-1_amd64.deb ... Unpacking libptexenc1:amd64 (2018.20181218.49446-1) ... Selecting previously unselected package libsynctex2:amd64. Preparing to unpack .../117-libsynctex2_2018.20181218.49446-1_amd64.deb ... Unpacking libsynctex2:amd64 (2018.20181218.49446-1) ... Selecting previously unselected package libtexlua52:amd64. Preparing to unpack .../118-libtexlua52_2018.20181218.49446-1_amd64.deb ... Unpacking libtexlua52:amd64 (2018.20181218.49446-1) ... Selecting previously unselected package libtexlua53:amd64. Preparing to unpack .../119-libtexlua53_2018.20181218.49446-1_amd64.deb ... Unpacking libtexlua53:amd64 (2018.20181218.49446-1) ... Selecting previously unselected package libtexluajit2:amd64. Preparing to unpack .../120-libtexluajit2_2018.20181218.49446-1_amd64.deb ... Unpacking libtexluajit2:amd64 (2018.20181218.49446-1) ... Selecting previously unselected package t1utils. Preparing to unpack .../121-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../122-libbrotli1_1.0.7-2+deb10u1_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.7-2+deb10u1) ... Selecting previously unselected package libgs9-common. Preparing to unpack .../123-libgs9-common_9.27~dfsg-2+deb10u4_all.deb ... Unpacking libgs9-common (9.27~dfsg-2+deb10u4) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../124-libavahi-common-data_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../125-libavahi-common3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../126-libavahi-client3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../127-libcups2_2.2.10-6+deb10u4_amd64.deb ... Unpacking libcups2:amd64 (2.2.10-6+deb10u4) ... Selecting previously unselected package libcupsimage2:amd64. Preparing to unpack .../128-libcupsimage2_2.2.10-6+deb10u4_amd64.deb ... Unpacking libcupsimage2:amd64 (2.2.10-6+deb10u4) ... Selecting previously unselected package libijs-0.35:amd64. Preparing to unpack .../129-libijs-0.35_0.35-14_amd64.deb ... Unpacking libijs-0.35:amd64 (0.35-14) ... Selecting previously unselected package libjbig2dec0:amd64. Preparing to unpack .../130-libjbig2dec0_0.16-1_amd64.deb ... Unpacking libjbig2dec0:amd64 (0.16-1) ... Selecting previously unselected package libgs9:amd64. Preparing to unpack .../131-libgs9_9.27~dfsg-2+deb10u4_amd64.deb ... Unpacking libgs9:amd64 (9.27~dfsg-2+deb10u4) ... Selecting previously unselected package libharfbuzz-icu0:amd64. Preparing to unpack .../132-libharfbuzz-icu0_2.3.1-1_amd64.deb ... Unpacking libharfbuzz-icu0:amd64 (2.3.1-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../133-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../134-libice6_2%3a1.0.9-2_amd64.deb ... Unpacking libice6:amd64 (2:1.0.9-2) ... Selecting previously unselected package libpotrace0:amd64. Preparing to unpack .../135-libpotrace0_1.15-1_amd64.deb ... Unpacking libpotrace0:amd64 (1.15-1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../136-libsm6_2%3a1.2.3-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.3-1) ... Selecting previously unselected package libteckit0:amd64. Preparing to unpack .../137-libteckit0_2.5.8+ds2-5_amd64.deb ... Unpacking libteckit0:amd64 (2.5.8+ds2-5) ... Selecting previously unselected package libwoff1:amd64. Preparing to unpack .../138-libwoff1_1.0.2-1_amd64.deb ... Unpacking libwoff1:amd64 (1.0.2-1) ... Selecting previously unselected package libxt6:amd64. Preparing to unpack .../139-libxt6_1%3a1.1.5-1+b3_amd64.deb ... Unpacking libxt6:amd64 (1:1.1.5-1+b3) ... Selecting previously unselected package libxmu6:amd64. Preparing to unpack .../140-libxmu6_2%3a1.1.2-2+b3_amd64.deb ... Unpacking libxmu6:amd64 (2:1.1.2-2+b3) ... Selecting previously unselected package libxpm4:amd64. Preparing to unpack .../141-libxpm4_1%3a3.5.12-1_amd64.deb ... Unpacking libxpm4:amd64 (1:3.5.12-1) ... Selecting previously unselected package libxaw7:amd64. Preparing to unpack .../142-libxaw7_2%3a1.0.13-1+b2_amd64.deb ... Unpacking libxaw7:amd64 (2:1.0.13-1+b2) ... Selecting previously unselected package libxi6:amd64. Preparing to unpack .../143-libxi6_2%3a1.7.9-1_amd64.deb ... Unpacking libxi6:amd64 (2:1.7.9-1) ... Selecting previously unselected package libxxhash0:amd64. Preparing to unpack .../144-libxxhash0_0.6.5-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.6.5-2) ... Selecting previously unselected package libzzip-0-13:amd64. Preparing to unpack .../145-libzzip-0-13_0.13.62-3.2_amd64.deb ... Unpacking libzzip-0-13:amd64 (0.13.62-3.2) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../146-texlive-binaries_2018.20181218.49446-1_amd64.deb ... Unpacking texlive-binaries (2018.20181218.49446-1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../147-xdg-utils_1.1.3-1+deb10u1_all.deb ... Unpacking xdg-utils (1.1.3-1+deb10u1) ... Selecting previously unselected package texlive-base. Preparing to unpack .../148-texlive-base_2018.20190227-2_all.deb ... Unpacking texlive-base (2018.20190227-2) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../149-texlive-latex-base_2018.20190227-2_all.deb ... Unpacking texlive-latex-base (2018.20190227-2) ... Selecting previously unselected package latexmk. Preparing to unpack .../150-latexmk_1%3a4.61-0.1_all.deb ... Unpacking latexmk (1:4.61-0.1) ... Selecting previously unselected package libatk1.0-data. Preparing to unpack .../151-libatk1.0-data_2.30.0-2_all.deb ... Unpacking libatk1.0-data (2.30.0-2) ... Selecting previously unselected package libatk1.0-0:amd64. Preparing to unpack .../152-libatk1.0-0_2.30.0-2_amd64.deb ... Unpacking libatk1.0-0:amd64 (2.30.0-2) ... Selecting previously unselected package libatspi2.0-0:amd64. Preparing to unpack .../153-libatspi2.0-0_2.30.0-7_amd64.deb ... Unpacking libatspi2.0-0:amd64 (2.30.0-7) ... Selecting previously unselected package libatk-bridge2.0-0:amd64. Preparing to unpack .../154-libatk-bridge2.0-0_2.30.0-5_amd64.deb ... Unpacking libatk-bridge2.0-0:amd64 (2.30.0-5) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../155-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../156-libblas3_3.8.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.8.0-2) ... Selecting previously unselected package libboost1.67-dev:amd64. Preparing to unpack .../157-libboost1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-atomic1.67.0:amd64. Preparing to unpack .../158-libboost-atomic1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-atomic1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-atomic1.67-dev:amd64. Preparing to unpack .../159-libboost-atomic1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-atomic1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-chrono1.67.0:amd64. Preparing to unpack .../160-libboost-chrono1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-chrono1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-chrono1.67-dev:amd64. Preparing to unpack .../161-libboost-chrono1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-chrono1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-date-time1.67.0:amd64. Preparing to unpack .../162-libboost-date-time1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-date-time1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-serialization1.67.0:amd64. Preparing to unpack .../163-libboost-serialization1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-serialization1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-serialization1.67-dev:amd64. Preparing to unpack .../164-libboost-serialization1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-serialization1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-date-time1.67-dev:amd64. Preparing to unpack .../165-libboost-date-time1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-date-time1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-dev:amd64. Preparing to unpack .../166-libboost-dev_1.67.0.1_amd64.deb ... Unpacking libboost-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libboost-python1.67.0. Preparing to unpack .../167-libboost-python1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-python1.67.0 (1.67.0-13+deb10u1) ... Selecting previously unselected package libpython2.7:amd64. Preparing to unpack .../168-libpython2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../169-libexpat1-dev_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libpython2.7-dev:amd64. Preparing to unpack .../170-libpython2.7-dev_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-dev:amd64. Preparing to unpack .../171-libpython2-dev_2.7.16-1_amd64.deb ... Unpacking libpython2-dev:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../172-libpython-dev_2.7.16-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.16-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../173-python2.7-dev_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-dev (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-dev. Preparing to unpack .../174-python2-dev_2.7.16-1_amd64.deb ... Unpacking python2-dev (2.7.16-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../175-python-dev_2.7.16-1_amd64.deb ... Unpacking python-dev (2.7.16-1) ... Selecting previously unselected package libpython3.7:amd64. Preparing to unpack .../176-libpython3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3.7-dev:amd64. Preparing to unpack .../177-libpython3.7-dev_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../178-libpython3-dev_3.7.3-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.7.3-1) ... Selecting previously unselected package python3.7-dev. Preparing to unpack .../179-python3.7-dev_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-dev (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../180-python3-dev_3.7.3-1_amd64.deb ... Unpacking python3-dev (3.7.3-1) ... Selecting previously unselected package libboost-python1.67-dev. Preparing to unpack .../181-libboost-python1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-python1.67-dev (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-python-dev. Preparing to unpack .../182-libboost-python-dev_1.67.0.1_amd64.deb ... Unpacking libboost-python-dev (1.67.0.1) ... Selecting previously unselected package libboost-regex1.67.0:amd64. Preparing to unpack .../183-libboost-regex1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-regex1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libicu-dev:amd64. Preparing to unpack .../184-libicu-dev_63.1-6+deb10u1_amd64.deb ... Unpacking libicu-dev:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libboost-regex1.67-dev:amd64. Preparing to unpack .../185-libboost-regex1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-regex1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-regex-dev:amd64. Preparing to unpack .../186-libboost-regex-dev_1.67.0.1_amd64.deb ... Unpacking libboost-regex-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libboost-system1.67-dev:amd64. Preparing to unpack .../187-libboost-system1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-system1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-system-dev:amd64. Preparing to unpack .../188-libboost-system-dev_1.67.0.1_amd64.deb ... Unpacking libboost-system-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libboost-thread1.67.0:amd64. Preparing to unpack .../189-libboost-thread1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-thread1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-thread1.67-dev:amd64. Preparing to unpack .../190-libboost-thread1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-thread1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-thread-dev:amd64. Preparing to unpack .../191-libboost-thread-dev_1.67.0.1_amd64.deb ... Unpacking libboost-thread-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libcairo-gobject2:amd64. Preparing to unpack .../192-libcairo-gobject2_1.16.0-4+deb10u1_amd64.deb ... Unpacking libcairo-gobject2:amd64 (1.16.0-4+deb10u1) ... Selecting previously unselected package libcolord2:amd64. Preparing to unpack .../193-libcolord2_1.4.3-4_amd64.deb ... Unpacking libcolord2:amd64 (1.4.3-4) ... Selecting previously unselected package libepoxy0:amd64. Preparing to unpack .../194-libepoxy0_1.5.3-0.1_amd64.deb ... Unpacking libepoxy0:amd64 (1.5.3-0.1) ... Selecting previously unselected package libffi-dev:amd64. Preparing to unpack .../195-libffi-dev_3.2.1-9_amd64.deb ... Unpacking libffi-dev:amd64 (3.2.1-9) ... Selecting previously unselected package libjson-glib-1.0-common. Preparing to unpack .../196-libjson-glib-1.0-common_1.4.4-2_all.deb ... Unpacking libjson-glib-1.0-common (1.4.4-2) ... Selecting previously unselected package libjson-glib-1.0-0:amd64. Preparing to unpack .../197-libjson-glib-1.0-0_1.4.4-2_amd64.deb ... Unpacking libjson-glib-1.0-0:amd64 (1.4.4-2) ... Selecting previously unselected package libsoup2.4-1:amd64. Preparing to unpack .../198-libsoup2.4-1_2.64.2-2_amd64.deb ... Unpacking libsoup2.4-1:amd64 (2.64.2-2) ... Selecting previously unselected package libsoup-gnome2.4-1:amd64. Preparing to unpack .../199-libsoup-gnome2.4-1_2.64.2-2_amd64.deb ... Unpacking libsoup-gnome2.4-1:amd64 (2.64.2-2) ... Selecting previously unselected package librest-0.7-0:amd64. Preparing to unpack .../200-librest-0.7-0_0.8.1-1_amd64.deb ... Unpacking librest-0.7-0:amd64 (0.8.1-1) ... Selecting previously unselected package libwayland-client0:amd64. Preparing to unpack .../201-libwayland-client0_1.16.0-1_amd64.deb ... Unpacking libwayland-client0:amd64 (1.16.0-1) ... Selecting previously unselected package libwayland-cursor0:amd64. Preparing to unpack .../202-libwayland-cursor0_1.16.0-1_amd64.deb ... Unpacking libwayland-cursor0:amd64 (1.16.0-1) ... Selecting previously unselected package libwayland-egl1:amd64. Preparing to unpack .../203-libwayland-egl1_1.16.0-1_amd64.deb ... Unpacking libwayland-egl1:amd64 (1.16.0-1) ... Selecting previously unselected package libxcomposite1:amd64. Preparing to unpack .../204-libxcomposite1_1%3a0.4.4-2_amd64.deb ... Unpacking libxcomposite1:amd64 (1:0.4.4-2) ... Selecting previously unselected package libxfixes3:amd64. Preparing to unpack .../205-libxfixes3_1%3a5.0.3-1_amd64.deb ... Unpacking libxfixes3:amd64 (1:5.0.3-1) ... Selecting previously unselected package libxcursor1:amd64. Preparing to unpack .../206-libxcursor1_1%3a1.1.15-2_amd64.deb ... Unpacking libxcursor1:amd64 (1:1.1.15-2) ... Selecting previously unselected package libxdamage1:amd64. Preparing to unpack .../207-libxdamage1_1%3a1.1.4-3+b3_amd64.deb ... Unpacking libxdamage1:amd64 (1:1.1.4-3+b3) ... Selecting previously unselected package libxinerama1:amd64. Preparing to unpack .../208-libxinerama1_2%3a1.1.4-2_amd64.deb ... Unpacking libxinerama1:amd64 (2:1.1.4-2) ... Selecting previously unselected package xkb-data. Preparing to unpack .../209-xkb-data_2.26-2_all.deb ... Unpacking xkb-data (2.26-2) ... Selecting previously unselected package libxkbcommon0:amd64. Preparing to unpack .../210-libxkbcommon0_0.8.2-1_amd64.deb ... Unpacking libxkbcommon0:amd64 (0.8.2-1) ... Selecting previously unselected package libxrandr2:amd64. Preparing to unpack .../211-libxrandr2_2%3a1.5.1-1_amd64.deb ... Unpacking libxrandr2:amd64 (2:1.5.1-1) ... Selecting previously unselected package libgtk-3-common. Preparing to unpack .../212-libgtk-3-common_3.24.5-1_all.deb ... Unpacking libgtk-3-common (3.24.5-1) ... Selecting previously unselected package libgtk-3-0:amd64. Preparing to unpack .../213-libgtk-3-0_3.24.5-1_amd64.deb ... Unpacking libgtk-3-0:amd64 (3.24.5-1) ... Selecting previously unselected package libimagequant0:amd64. Preparing to unpack .../214-libimagequant0_2.12.2-1.1_amd64.deb ... Unpacking libimagequant0:amd64 (2.12.2-1.1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../215-libjs-jquery_3.3.1~dfsg-3+deb10u1_all.deb ... Unpacking libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../216-libjs-underscore_1.9.1~dfsg-1+deb10u1_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../217-libjs-sphinxdoc_1.8.4-1_all.deb ... Unpacking libjs-sphinxdoc (1.8.4-1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../218-liblapack3_3.8.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.8.0-2) ... Selecting previously unselected package liblua5.1-0:amd64. Preparing to unpack .../219-liblua5.1-0_5.1.5-8.1+b2_amd64.deb ... Unpacking liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Selecting previously unselected package libncurses-dev:amd64. Preparing to unpack .../220-libncurses-dev_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libpq5:amd64. Preparing to unpack .../221-libpq5_11.13-0+deb10u1_amd64.deb ... Unpacking libpq5:amd64 (11.13-0+deb10u1) ... Selecting previously unselected package libpq-dev. Preparing to unpack .../222-libpq-dev_11.13-0+deb10u1_amd64.deb ... Unpacking libpq-dev (11.13-0+deb10u1) ... Selecting previously unselected package librsvg2-bin. Preparing to unpack .../223-librsvg2-bin_2.44.10-2.1_amd64.deb ... Unpacking librsvg2-bin (2.44.10-2.1) ... Selecting previously unselected package libschroedinger-maeparser1:amd64. Preparing to unpack .../224-libschroedinger-maeparser1_1.0.1-4_amd64.deb ... Unpacking libschroedinger-maeparser1:amd64 (1.0.1-4) ... Selecting previously unselected package libschroedinger-coordgenlibs1:amd64. Preparing to unpack .../225-libschroedinger-coordgenlibs1_1.1-3_amd64.deb ... Unpacking libschroedinger-coordgenlibs1:amd64 (1.1-3) ... Selecting previously unselected package libschroedinger-coordgenlibs-dev:amd64. Preparing to unpack .../226-libschroedinger-coordgenlibs-dev_1.1-3_amd64.deb ... Unpacking libschroedinger-coordgenlibs-dev:amd64 (1.1-3) ... Selecting previously unselected package libschroedinger-maeparser-dev:amd64. Preparing to unpack .../227-libschroedinger-maeparser-dev_1.0.1-4_amd64.deb ... Unpacking libschroedinger-maeparser-dev:amd64 (1.0.1-4) ... Selecting previously unselected package libsqlite3-dev:amd64. Preparing to unpack .../228-libsqlite3-dev_3.27.2-3+deb10u1_amd64.deb ... Unpacking libsqlite3-dev:amd64 (3.27.2-3+deb10u1) ... Selecting previously unselected package libtinfo-dev:amd64. Preparing to unpack .../229-libtinfo-dev_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libwebpdemux2:amd64. Preparing to unpack .../230-libwebpdemux2_0.6.1-2+deb10u1_amd64.deb ... Unpacking libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../231-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package llvm-7-runtime. Preparing to unpack .../232-llvm-7-runtime_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking llvm-7-runtime (1:7.0.1-8+deb10u2) ... Selecting previously unselected package llvm-7. Preparing to unpack .../233-llvm-7_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking llvm-7 (1:7.0.1-8+deb10u2) ... Selecting previously unselected package llvm-7-dev. Preparing to unpack .../234-llvm-7-dev_1%3a7.0.1-8+deb10u2_amd64.deb ... Unpacking llvm-7-dev (1:7.0.1-8+deb10u2) ... Selecting previously unselected package lsb-release. Preparing to unpack .../235-lsb-release_10.2019051400_all.deb ... Unpacking lsb-release (10.2019051400) ... Selecting previously unselected package pandoc-data. Preparing to unpack .../236-pandoc-data_2.2.1-3_all.deb ... Unpacking pandoc-data (2.2.1-3) ... Selecting previously unselected package pandoc. Preparing to unpack .../237-pandoc_2.2.1-3+b2_amd64.deb ... Unpacking pandoc (2.2.1-3+b2) ... Selecting previously unselected package postgresql-client-common. Preparing to unpack .../238-postgresql-client-common_200+deb10u4_all.deb ... Unpacking postgresql-client-common (200+deb10u4) ... Selecting previously unselected package ssl-cert. Preparing to unpack .../239-ssl-cert_1.0.39_all.deb ... Unpacking ssl-cert (1.0.39) ... Selecting previously unselected package postgresql-common. Preparing to unpack .../240-postgresql-common_200+deb10u4_all.deb ... Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' Unpacking postgresql-common (200+deb10u4) ... Selecting previously unselected package postgresql-server-dev-11. Preparing to unpack .../241-postgresql-server-dev-11_11.13-0+deb10u1_amd64.deb ... Unpacking postgresql-server-dev-11 (11.13-0+deb10u1) ... Selecting previously unselected package postgresql-server-dev-all. Preparing to unpack .../242-postgresql-server-dev-all_200+deb10u4_all.deb ... Unpacking postgresql-server-dev-all (200+deb10u4) ... Selecting previously unselected package preview-latex-style. Preparing to unpack .../243-preview-latex-style_11.91-2_all.deb ... Unpacking preview-latex-style (11.91-2) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../244-python-babel-localedata_2.6.0+dfsg.1-1_all.deb ... Unpacking python-babel-localedata (2.6.0+dfsg.1-1) ... Selecting previously unselected package python-six. Preparing to unpack .../245-python-six_1.12.0-1_all.deb ... Unpacking python-six (1.12.0-1) ... Selecting previously unselected package python-dateutil. Preparing to unpack .../246-python-dateutil_2.7.3-3_all.deb ... Unpacking python-dateutil (2.7.3-3) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../247-python-pkg-resources_40.8.0-1_all.deb ... Unpacking python-pkg-resources (40.8.0-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../248-python-numpy_1%3a1.16.2-1_amd64.deb ... Unpacking python-numpy (1:1.16.2-1) ... Selecting previously unselected package python-tz. Preparing to unpack .../249-python-tz_2019.1-1_all.deb ... Unpacking python-tz (2019.1-1) ... Selecting previously unselected package python-pandas-lib. Preparing to unpack .../250-python-pandas-lib_0.23.3+dfsg-3_amd64.deb ... Unpacking python-pandas-lib (0.23.3+dfsg-3) ... Selecting previously unselected package python-pandas. Preparing to unpack .../251-python-pandas_0.23.3+dfsg-3_all.deb ... Unpacking python-pandas (0.23.3+dfsg-3) ... Selecting previously unselected package python-pil:amd64. Preparing to unpack .../252-python-pil_5.4.1-2+deb10u2_amd64.deb ... Unpacking python-pil:amd64 (5.4.1-2+deb10u2) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../253-python3-alabaster_0.7.8-1_all.deb ... Unpacking python3-alabaster (0.7.8-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../254-python3-pkg-resources_40.8.0-1_all.deb ... Unpacking python3-pkg-resources (40.8.0-1) ... Selecting previously unselected package python3-tz. Preparing to unpack .../255-python3-tz_2019.1-1_all.deb ... Unpacking python3-tz (2019.1-1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../256-python3-babel_2.6.0+dfsg.1-1_all.deb ... Unpacking python3-babel (2.6.0+dfsg.1-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../257-python3-certifi_2018.8.24-1_all.deb ... Unpacking python3-certifi (2018.8.24-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../258-python3-chardet_3.0.4-3_all.deb ... Unpacking python3-chardet (3.0.4-3) ... Selecting previously unselected package python3-commonmark-bkrs. Preparing to unpack .../259-python3-commonmark-bkrs_0.5.4+ds-2_all.deb ... Unpacking python3-commonmark-bkrs (0.5.4+ds-2) ... Selecting previously unselected package python3-roman. Preparing to unpack .../260-python3-roman_2.0.0-3_all.deb ... Unpacking python3-roman (2.0.0-3) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../261-python3-docutils_0.14+dfsg-4_all.deb ... Unpacking python3-docutils (0.14+dfsg-4) ... Selecting previously unselected package python3-idna. Preparing to unpack .../262-python3-idna_2.6-1_all.deb ... Unpacking python3-idna (2.6-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../263-python3-imagesize_1.0.0-1_all.deb ... Unpacking python3-imagesize (1.0.0-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../264-python3-markupsafe_1.1.0-1_amd64.deb ... Unpacking python3-markupsafe (1.1.0-1) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../265-python3-jinja2_2.10-2_all.deb ... Unpacking python3-jinja2 (2.10-2) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../266-python3-pyparsing_2.2.0+dfsg1-2_all.deb ... Unpacking python3-pyparsing (2.2.0+dfsg1-2) ... Selecting previously unselected package python3-six. Preparing to unpack .../267-python3-six_1.12.0-1_all.deb ... Unpacking python3-six (1.12.0-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../268-python3-packaging_19.0-1_all.deb ... Unpacking python3-packaging (19.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../269-python3-pygments_2.3.1+dfsg-1+deb10u2_all.deb ... Unpacking python3-pygments (2.3.1+dfsg-1+deb10u2) ... Selecting previously unselected package python3-recommonmark. Preparing to unpack .../270-python3-recommonmark_0.4.0+ds-5_all.deb ... Unpacking python3-recommonmark (0.4.0+ds-5) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../271-python3-urllib3_1.24.1-1_all.deb ... Unpacking python3-urllib3 (1.24.1-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../272-python3-requests_2.21.0-1_all.deb ... Unpacking python3-requests (2.21.0-1) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../273-sphinx-common_1.8.4-1_all.deb ... Unpacking sphinx-common (1.8.4-1) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../274-python3-sphinx_1.8.4-1_all.deb ... Unpacking python3-sphinx (1.8.4-1) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../275-rapidjson-dev_1.1.0+dfsg2-5_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-5) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../276-texlive-fonts-recommended_2018.20190227-2_all.deb ... Unpacking texlive-fonts-recommended (2018.20190227-2) ... Selecting previously unselected package texlive-plain-generic. Preparing to unpack .../277-texlive-plain-generic_2018.20190227-2_all.deb ... Unpacking texlive-plain-generic (2018.20190227-2) ... Selecting previously unselected package texlive-generic-extra. Preparing to unpack .../278-texlive-generic-extra_2018.20190227-2_all.deb ... Unpacking texlive-generic-extra (2018.20190227-2) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../279-texlive-latex-recommended_2018.20190227-2_all.deb ... Unpacking texlive-latex-recommended (2018.20190227-2) ... Selecting previously unselected package texlive-pictures. Preparing to unpack .../280-texlive-pictures_2018.20190227-2_all.deb ... Unpacking texlive-pictures (2018.20190227-2) ... Selecting previously unselected package texlive-latex-extra. Preparing to unpack .../281-texlive-latex-extra_2018.20190227-2_all.deb ... Unpacking texlive-latex-extra (2018.20190227-2) ... Setting up libboost1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libgs9-common (9.27~dfsg-2+deb10u4) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libgraphite2-3:amd64 (1.3.13-7) ... Setting up liblcms2-2:amd64 (2.9-3) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up lsb-base (10.2019051400) ... Setting up systemd-sysv (241-7~deb10u8) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up imagemagick-6-common (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libproxy1v5:amd64 (0.4.15-5+deb10u1) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libboost-chrono1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up mime-support (3.62) ... Setting up libtexlua52:amd64 (2018.20181218.49446-1) ... Setting up hicolor-icon-theme (0.17-2) ... Setting up libbison-dev:amd64 (2:3.3.2.dfsg-1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libtexlua53:amd64 (2018.20181218.49446-1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libgc1c2:amd64 (1:7.6.4-0.4) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Setting up distro-info-data (0.41+deb10u4) ... Setting up libijs-0.35:amd64 (0.35-14) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libtexluajit2:amd64 (2018.20181218.49446-1) ... Setting up libbrotli1:amd64 (1.0.7-2+deb10u1) ... Setting up libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.26-2) ... Setting up libobjc4:amd64 (8.3.0-6) ... Setting up libzzip-0-13:amd64 (0.13.62-3.2) ... Setting up libboost-date-time1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libffi-dev:amd64 (3.2.1-9) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libcolord2:amd64 (1.4.3-4) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up python-babel-localedata (2.6.0+dfsg.1-1) ... Setting up rapidjson-dev (1.1.0+dfsg2-5) ... Setting up libschroedinger-maeparser1:amd64 (1.0.1-4) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libdconf1:amd64 (0.30.1-2) ... Setting up libobjc-8-dev:amd64 (8.3.0-6) ... Setting up libboost-chrono1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libsqlite3-dev:amd64 (3.27.2-3+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libepoxy0:amd64 (1.5.3-0.1) ... Setting up libjbig2dec0:amd64 (0.16-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libteckit0:amd64 (2.5.8+ds2-5) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up dbus (1.12.20-0+deb10u1) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Setting up t1utils (1.41-3) ... Setting up libimagequant0:amd64 (2.12.2-1.1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up binfmt-support (2.2.0-2) ... Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service -> /lib/systemd/system/binfmt-support.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libltdl7:amd64 (2.4.6-9) ... Setting up libfftw3-double3:amd64 (3.3.8-2) ... Setting up libkpathsea6:amd64 (2018.20181218.49446-1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up libatk1.0-data (2.30.0-2) ... Setting up libnuma1:amd64 (2.0.12-1) ... Setting up liblqr-1-0:amd64 (0.4.2-2.1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libxxhash0:amd64 (0.6.5-2) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up liblua5.1-0:amd64 (5.1.5-8.1+b2) ... Setting up libboost-python1.67.0 (1.67.0-13+deb10u1) ... Setting up libpam-systemd:amd64 (241-7~deb10u8) ... Setting up libc6-i386 (2.28-10) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libopenjp2-7:amd64 (2.3.0-2+deb10u2) ... Setting up libthai-data (0.1.28-2) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up netbase (5.6) ... Setting up libboost-atomic1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libjson-glib-1.0-common (1.4.4-2) ... Setting up sgml-base (1.29) ... Setting up cmake-data (3.13.4-1) ... Setting up libboost-system1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libatk1.0-0:amd64 (2.30.0-2) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libboost-dev:amd64 (1.67.0.1) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libwayland-egl1:amd64 (1.16.0-1) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up pandoc-data (2.2.1-3) ... Setting up libjs-jquery (3.3.1~dfsg-3+deb10u1) ... Setting up glib-networking-common (2.58.0-2+deb10u2) ... Setting up libde265-0:amd64 (1.0.3-1+b1) ... Setting up libboost-serialization1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up openssl (1.1.1d-0+deb10u7) ... Setting up libwebpmux3:amd64 (0.6.1-2+deb10u1) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:amd64 (63.1-6+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up xdg-utils (1.1.3-1+deb10u1) ... Setting up dctrl-tools (2.24-3) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libsynctex2:amd64 (2018.20181218.49446-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libjs-underscore (1.9.1~dfsg-1+deb10u1) ... Setting up libschroedinger-maeparser-dev:amd64 (1.0.1-4) ... Setting up libxkbcommon0:amd64 (0.8.2-1) ... Setting up libpotrace0:amd64 (1.15-1) ... Setting up libwayland-client0:amd64 (1.16.0-1) ... Setting up libboost-atomic1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up postgresql-client-common (200+deb10u4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up glib-networking-services (2.58.0-2+deb10u2) ... Setting up libboost-serialization1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libboost-regex1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libwoff1:amd64 (1.0.2-1) ... Setting up libboost-thread1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libpython3.7:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:amd64 (3.3.3-4+deb10u1) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libx265-165:amd64 (2.9-4) ... Setting up libboost-regex1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up libwebpdemux2:amd64 (0.6.1-2+deb10u1) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libboost-system-dev:amd64 (1.67.0.1) ... Setting up libheif1:amd64 (1.3.2-2~deb10u1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libschroedinger-coordgenlibs1:amd64 (1.1-3) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up lib32gcc1 (1:8.3.0-6) ... Setting up libllvm6.0:amd64 (1:6.0.1-10) ... Setting up libclang1-6.0:amd64 (1:6.0.1-10) ... Setting up libjson-glib-1.0-0:amd64 (1.4.4-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up dbus-user-session (1.12.20-0+deb10u1) ... Setting up libboost-date-time1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up doxygen (1.8.13-10) ... Setting up libptexenc1:amd64 (2018.20181218.49446-1) ... Setting up pandoc (2.2.1-3+b2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up lib32stdc++6 (8.3.0-6) ... Setting up ssl-cert (1.0.39) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libjs-sphinxdoc (1.8.4-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libwayland-cursor0:amd64 (1.16.0-1) ... Setting up xml-core (0.18+nmu1) ... Setting up bison (2:3.3.2.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libclang1-7 (1:7.0.1-8+deb10u2) ... Setting up libboost-regex-dev:amd64 (1.67.0.1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtinfo-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up flex (2.6.4-6.2) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:amd64 (2.3.1-1) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up llvm-7-runtime (1:7.0.1-8+deb10u2) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up llvm-7 (1:7.0.1-8+deb10u2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libschroedinger-coordgenlibs-dev:amd64 (1.1-3) ... Setting up libboost-thread1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libpq5:amd64 (11.13-0+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libpq-dev (11.13-0+deb10u1) ... Setting up dconf-service (0.30.1-2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up libatspi2.0-0:amd64 (2.30.0-7) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer -> /lib/systemd/system/man-db.timer. Setting up python3-markupsafe (1.1.0-1) ... Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up python3-tz (2019.1-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libatk-bridge2.0-0:amd64 (2.30.0-5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python3-roman (2.0.0-3) ... Setting up python3-jinja2 (2.10-2) ... Setting up python3-pygments (2.3.1+dfsg-1+deb10u2) ... Setting up python3-pyparsing (2.2.0+dfsg1-2) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up postgresql-common (200+deb10u4) ... Adding user postgres to group ssl-cert Creating config file /etc/postgresql-common/createcluster.conf with new version Building PostgreSQL dictionaries from installed myspell/hunspell packages... Removing obsolete dictionary files: Created symlink /etc/systemd/system/multi-user.target.wants/postgresql.service -> /lib/systemd/system/postgresql.service. Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up python3-idna (2.6-1) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up python3-commonmark-bkrs (0.5.4+ds-2) ... Setting up libclang-common-7-dev (1:7.0.1-8+deb10u2) ... Setting up cmake (3.13.4-1) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up lsb-release (10.2019051400) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up libboost-thread-dev:amd64 (1.67.0.1) ... Setting up python3-imagesize (1.0.0-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up clang-7 (1:7.0.1-8+deb10u2) ... Setting up llvm-7-dev (1:7.0.1-8+deb10u2) ... Setting up gtk-update-icon-cache (3.24.5-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up python2-dev (2.7.16-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up dconf-gsettings-backend:amd64 (0.30.1-2) ... Setting up python3-babel (2.6.0+dfsg.1-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python-pkg-resources (40.8.0-1) ... Setting up python3-alabaster (0.7.8-1) ... Setting up po-debconf (1.0.21) ... Setting up preview-latex-style (11.91-2) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python-pil:amd64 (5.4.1-2+deb10u2) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libcupsimage2:amd64 (2.2.10-6+deb10u4) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python-six (1.12.0-1) ... Setting up libmagickcore-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up python-dateutil (2.7.3-3) ... Setting up python3-packaging (19.0-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up python3-dev (3.7.3-1) ... Setting up python3-requests (2.21.0-1) ... Setting up postgresql-server-dev-11 (11.13-0+deb10u1) ... Setting up python-tz (2019.1-1) ... Setting up libmagickwand-6.q16-6:amd64 (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up libcairo-gobject2:amd64 (1.16.0-4+deb10u1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up postgresql-server-dev-all (200+deb10u4) ... Setting up libgtk-3-common (3.24.5-1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python-dev (2.7.16-1) ... Setting up gsettings-desktop-schemas (3.28.1-1) ... Setting up libgs9:amd64 (9.27~dfsg-2+deb10u4) ... Setting up python-numpy (1:1.16.2-1) ... Setting up librsvg2-2:amd64 (2.44.10-2.1) ... Setting up librsvg2-common:amd64 (2.44.10-2.1) ... Setting up imagemagick-6.q16 (8:6.9.10.23+dfsg-2.1+deb10u1) ... update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare (compare) in auto mode update-alternatives: using /usr/bin/compare-im6.q16 to provide /usr/bin/compare-im6 (compare-im6) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate (animate) in auto mode update-alternatives: using /usr/bin/animate-im6.q16 to provide /usr/bin/animate-im6 (animate-im6) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert (convert) in auto mode update-alternatives: using /usr/bin/convert-im6.q16 to provide /usr/bin/convert-im6 (convert-im6) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite (composite) in auto mode update-alternatives: using /usr/bin/composite-im6.q16 to provide /usr/bin/composite-im6 (composite-im6) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure (conjure) in auto mode update-alternatives: using /usr/bin/conjure-im6.q16 to provide /usr/bin/conjure-im6 (conjure-im6) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import (import) in auto mode update-alternatives: using /usr/bin/import-im6.q16 to provide /usr/bin/import-im6 (import-im6) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify (identify) in auto mode update-alternatives: using /usr/bin/identify-im6.q16 to provide /usr/bin/identify-im6 (identify-im6) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream (stream) in auto mode update-alternatives: using /usr/bin/stream-im6.q16 to provide /usr/bin/stream-im6 (stream-im6) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display (display) in auto mode update-alternatives: using /usr/bin/display-im6.q16 to provide /usr/bin/display-im6 (display-im6) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage (montage) in auto mode update-alternatives: using /usr/bin/montage-im6.q16 to provide /usr/bin/montage-im6 (montage-im6) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify (mogrify) in auto mode update-alternatives: using /usr/bin/mogrify-im6.q16 to provide /usr/bin/mogrify-im6 (mogrify-im6) in auto mode Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up glib-networking:amd64 (2.58.0-2+deb10u2) ... Setting up libboost-python1.67-dev (1.67.0-13+deb10u1) ... Setting up python-pandas-lib (0.23.3+dfsg-3) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up libsoup2.4-1:amd64 (2.64.2-2) ... Setting up texlive-plain-generic (2018.20190227-2) ... Setting up python-pandas (0.23.3+dfsg-3) ... Setting up libboost-python-dev (1.67.0.1) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up adwaita-icon-theme (3.30.1-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up texlive-pictures (2018.20190227-2) ... Setting up imagemagick (8:6.9.10.23+dfsg-2.1+deb10u1) ... Setting up texlive-fonts-recommended (2018.20190227-2) ... Setting up libsoup-gnome2.4-1:amd64 (2.64.2-2) ... Setting up librest-0.7-0:amd64 (0.8.1-1) ... Setting up texlive-generic-extra (2018.20190227-2) ... Setting up libgtk-3-0:amd64 (3.24.5-1) ... Setting up latexmk (1:4.61-0.1) ... Setting up texlive-latex-extra (2018.20190227-2) ... Setting up librsvg2-bin (2.44.10-2.1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for systemd (241-7~deb10u8) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-4) ... Processing triggers for sgml-base (1.29) ... Setting up python3-docutils (0.14+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-recommonmark (0.4.0+ds-5) ... Setting up python3-sphinx (1.8.4-1) ... update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-apidoc to provide /usr/bin/sphinx-apidoc (sphinx-apidoc) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-autogen to provide /usr/bin/sphinx-autogen (sphinx-autogen) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-build to provide /usr/bin/sphinx-build (sphinx-build) in auto mode update-alternatives: using /usr/share/sphinx/scripts/python3/sphinx-quickstart to provide /usr/bin/sphinx-quickstart (sphinx-quickstart) in auto mode Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/rdkit-201809.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../rdkit_201809.1+dfsg-6_source.changes dpkg-buildpackage: info: source package rdkit dpkg-buildpackage: info: source version 201809.1+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael Banck dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean pg_buildext checkcontrol dh clean --with python2 --buildsystem=cmake --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/build/rdkit-201809.1+dfsg' find /build/rdkit-201809.1+dfsg -name "*.pyc" | xargs rm -f rm -f -r Projects/DbCLI/testData/bzr/ rdkit/Chem/inchi.py rm -f -r Docs/Book/_build Code/docs rdkit/docs Code/doxygen_sqlite3.db rm -f \ Code/ForceField/MMFF/test_data/MMFF94_dative_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_dative_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min.sdf \ Code/ForceField/MMFF/test_data/MMFF94_hypervalent_min_from_SMILES.sdf \ Code/ForceField/MMFF/test_data/MMFF94_reference.log \ Code/ForceField/MMFF/test_data/MMFF94s_reference.log \ Code/ForceField/MMFF/test_data/testMMFFForceField.log \ Code/GraphMol/Depictor/test_data/cis_trans_cpp.out.sdf \ Code/GraphMol/Depictor/test_data/collisions.out.sdf \ Code/GraphMol/Depictor/test_data/first_200.out.sdf \ Code/GraphMol/Depictor/test_data/test1.out.sdf \ Code/GraphMol/FileParsers/test_data/blah.sdf \ Code/GraphMol/FileParsers/test_data/cdk2_stereo.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.sdf \ Code/GraphMol/FileParsers/test_data/outNCI_few.tdt \ Code/GraphMol/FileParsers/test_data/outNCI_first_200.props.sdf \ Code/GraphMol/FileParsers/test_data/outSmiles.csv \ Code/GraphMol/ForceFieldHelpers/UFF/test_data/Issue62.sdf \ Code/GraphMol/MolAlign/test_data/ref_e2_pyCrippenO3A.sdf \ Code/GraphMol/SLNParse/lex.yysln.cpp \ Code/GraphMol/SLNParse/sln.tab.cpp \ Code/GraphMol/SLNParse/sln.tab.hpp \ Code/GraphMol/SmilesParse/lex.yysmarts.cpp \ Code/GraphMol/SmilesParse/lex.yysmiles.cpp \ Code/GraphMol/SmilesParse/smarts.tab.cpp \ Code/GraphMol/SmilesParse/smarts.tab.hpp \ Code/GraphMol/SmilesParse/smiles.tab.cpp \ Code/GraphMol/SmilesParse/smiles.tab.hpp \ Code/GraphMol/Wrap/test_data/outNCI_few.sdf \ Code/GraphMol/Wrap/test_data/outSmiles.txt \ Code/RDGeneral/versions.cpp \ Docs/Book/Cartridge.rst \ Docs/Book/Cookbook.rst \ Docs/Book/Install.rst \ Docs/Book/Overview.rst \ rdkit/ML/Data/test_data/testgeneral.dat.pkl \ rdkit/ML/Data/test_data/testquant.qdat.pkl rm -f Code/RDGeneral/versions.h rdkit/sping/tests/testallps.ps dh_auto_clean pg_buildext clean /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v ### clean 11 ### make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' dh_clean -O--buildsystem=cmake -O--parallel debian/rules build dh build --with python2 --buildsystem=cmake --parallel dh_update_autotools_config -O--buildsystem=cmake -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_auto_configure -- \ -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON \ -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF \ -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON \ -DRDK_OPTIMIZE_NATIVE=OFF cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_BUILD_TYPE=None -DCMAKE_SKIP_RPATH=ON -DRDK_INSTALL_INTREE=OFF -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_BUILD_THREADSAFE_SSS=ON -DRDK_BUILD_PYTHON_WRAPPERS=ON -DRDK_OPTIMIZE_NATIVE=OFF .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Found Catch2 source in /build/rdkit-201809.1+dfsg/External/catch/catch CATCH: /build/rdkit-201809.1+dfsg/External/catch/catch/single_include -- Found PythonInterp: /usr/bin/python (found version "2.7.16") -- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython2.7.so (found version "2.7.16") Python Install directory /usr/lib/python2.7/dist-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0") Eigen3 not found, disabling the Descriptors3D build. -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Boost version: 1.67.0 -- Found the following Boost libraries: -- serialization == Using strict rotor definition == Updating Filters.cpp from pains file == Done updating pains files -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_auto_build cd obj-x86_64-linux-gnu && make -j16 make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/rdkit-201809.1+dfsg -B/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/catch /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/catch /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= Scanning dependencies of target inchi_support make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py Scanning dependencies of target catch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= [ 0%] Built target inchi_support Scanning dependencies of target hc Scanning dependencies of target RDGeneral make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o [ 2%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.cpp [ 2%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hc.c [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cc -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Dhc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/hcdriver.c [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/Dict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.cpp [ 3%] Linking C shared library ../../../../lib/libRDKithc.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2018.09.1 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target hc [ 3%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/Dict.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend Scanning dependencies of target testDict Scanning dependencies of target testRDValue make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target RDBoost make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= Scanning dependencies of target testMatrices [ 3%] Building CXX object Code/RDGeneral/CMakeFiles/testRDValue.dir/testRDValue.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRDValue.dir/testRDValue.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testRDValue.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build Scanning dependencies of target DataStructs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testQuery make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target EigenSolvers Scanning dependencies of target Catalogs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build Scanning dependencies of target SimDivPickers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/testDict.dir/testDict.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build Scanning dependencies of target testMatCalc cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDict.dir/testDict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDGeneral/testDict.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build [ 4%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/c++ -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap.cpp [ 4%] Building CXX object Code/Numerics/CMakeFiles/testMatrices.dir/testMatrices.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatrices.dir/testMatrices.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/testMatrices.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 4%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.cpp [ 4%] Building CXX object Code/Query/CMakeFiles/testQuery.dir/test.cpp.o [ 4%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o [ 5%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testQuery.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Query/test.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.cpp [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/c++ -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.cpp [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o [ 5%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o [ 5%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.cpp [ 6%] Building CXX object Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/c++ -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/testMatCalc.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.cpp [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Utils.cpp [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.cpp [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.cpp [ 6%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.cpp [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.cpp [ 6%] Linking CXX executable testMatCalc cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatCalc.dir/testMatCalc.cpp.o -o testMatCalc ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 6%] Built target testMatCalc [ 6%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.cpp [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.cpp [ 7%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 7%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2018.09.1 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so [ 7%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testSimDivPickers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 7%] Built target Catalogs [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/testPickers.cpp [ 8%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 8%] Built target EigenSolvers [ 8%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2018.09.1 CMakeFiles/RDBoost.dir/Wrap.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2018.09.1 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 8%] Built target RDBoost make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= Scanning dependencies of target rdBase make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target Clustering make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 8%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdBase_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap/RDBase.cpp [ 8%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/c++ -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh/Clustering.cpp [ 9%] Linking CXX executable testQuery cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query && /usr/bin/cmake -E cmake_link_script CMakeFiles/testQuery.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testQuery.dir/test.cpp.o -o testQuery ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 9%] Built target testQuery [ 9%] Linking CXX executable testMatrices cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMatrices.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMatrices.dir/testMatrices.cpp.o -o testMatrices ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 9%] Linking CXX executable testRDValue cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRDValue.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRDValue.dir/testRDValue.cpp.o -o testRDValue ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 9%] Built target testMatrices make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 9%] Built target testRDValue [ 10%] Linking CXX executable testSimDivPickers cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSimDivPickers.dir/testPickers.cpp.o -o testSimDivPickers ../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread ../../lib/libRDKithc.so.1.2018.09.1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 10%] Built target testSimDivPickers [ 10%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2018.09.1 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 10%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend Scanning dependencies of target testDataStructs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= Scanning dependencies of target testFPB make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testMultiFPB make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target RDGeometryLib Scanning dependencies of target rdMetricMatrixCalc make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build Scanning dependencies of target InfoTheory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build Scanning dependencies of target cDataStructs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 11%] Building CXX object Code/DataStructs/CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o [ 12%] Building CXX object Code/DataStructs/CMakeFiles/testFPB.dir/testFPB.cpp.o make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 12%] Building CXX object Code/DataStructs/CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testMultiFPB.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFPB.dir/testFPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testFPB.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/c++ -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/testDatastructs.cpp make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build Scanning dependencies of target rdSimDivPickers make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 12%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMetricMatrixCalc_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/point.cpp [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DataStructs.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.cpp [ 13%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/c++ -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.cpp [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/DiscreteValueVect.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o [ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/SparseIntVect.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/MaxMinPicker.cpp [ 13%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh && /usr/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o ../../../../lib/libRDKithc.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 13%] Built target Clustering [ 13%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.cpp [ 13%] Linking CXX executable testDict cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDict.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDict.dir/testDict.cpp.o -o testDict ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 13%] Built target testDict [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_SparseBV.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_BitOps.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_FPB.cpp [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcDataStructs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap/wrap_Utils.cpp [ 15%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 16%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so [ 16%] Built target RDGeometryLib make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 16%] Built target InfoTheory make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= [ 16%] Building CXX object Code/Geometry/CMakeFiles/testTransforms.dir/testTransforms.cpp.o Scanning dependencies of target testGrid cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTransforms.dir/testTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testTransforms.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 16%] Building CXX object Code/Geometry/CMakeFiles/testGrid.dir/testGrid.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testGrid.dir/testGrid.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/testGrid.cpp [ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp [ 16%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSimDivPickers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp [ 16%] Linking CXX executable testFPB [ 16%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFPB.dir/link.txt --verbose=1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFPB.dir/testFPB.cpp.o -o testFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 16%] Built target rdMetricMatrixCalc make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend [ 16%] Built target testFPB make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdGeometry make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target Alignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/Point.cpp [ 16%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DAlignment_EXPORTS -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.cpp [ 17%] Linking CXX executable testMultiFPB cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMultiFPB.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMultiFPB.dir/testMultiFPB.cpp.o -o testMultiFPB ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 17%] Built target testMultiFPB make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= Scanning dependencies of target GraphMol make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 17%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.cpp [ 18%] Linking CXX executable testTransforms cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTransforms.dir/testTransforms.cpp.o -o testTransforms ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 18%] Built target testTransforms make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.cpp Scanning dependencies of target rdInfoTheory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 19%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.cpp [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.cpp make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= Scanning dependencies of target cQuantize make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 19%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DcQuantize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/Data/cQuantize.cpp [ 19%] Linking CXX executable testGrid cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry && /usr/bin/cmake -E cmake_link_script CMakeFiles/testGrid.dir/link.txt --verbose=1 [ 19%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testGrid.dir/testGrid.cpp.o -o testGrid ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2018.09.1 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 19%] Built target testGrid make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target ChemicalFeatures [ 19%] Built target Alignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testAlignment [ 19%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.cpp make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 19%] Building CXX object Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/testAlignment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/c++ -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAlignment.dir/testAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/testAlignment.cpp make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= Scanning dependencies of target rdAlignment make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 19%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdAlignment_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap/rdAlignment.cpp [ 20%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o ../../../lib/libRDKitSimDivPickers.so.1.2018.09.1 ../../../lib/libRDKithc.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Built target rdSimDivPickers [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp [ 20%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Built target ChemicalFeatures make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Building CXX object Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/c++ -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/testChemicalFeatures.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.cpp [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FindRings.cpp [ 20%] Linking CXX executable testDataStructs cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDataStructs.dir/testDatastructs.cpp.o -o testDataStructs ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Built target testDataStructs [ 20%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdInfoTheory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.cpp [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.cpp [ 21%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data && /usr/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o ../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 21%] Built target cQuantize [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.cpp [ 21%] Linking CXX executable testAlignment cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testAlignment.dir/testAlignment.cpp.o -o testAlignment ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 21%] Built target testAlignment [ 21%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/UniformGrid3D.cpp [ 21%] Linking CXX executable testChemicalFeatures cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemicalFeatures.dir/testChemicalFeatures.cpp.o -o testChemicalFeatures ../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 21%] Built target testChemicalFeatures [ 22%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdGeometry_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap/rdGeometry.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.cpp [ 22%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 22%] Built target rdAlignment [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.cpp [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.cpp [ 22%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o ../../../../lib/libRDKitInfoTheory.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 23%] Built target rdInfoTheory [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Aromaticity.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Kekulize.cpp [ 23%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 23%] Built target cDataStructs [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDiscriminators.cpp [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ConjugHybrid.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AddHs.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Matrices.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.cpp [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Renumber.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/AdjustQuery.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.cpp [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.cpp [ 25%] Linking CXX shared module ../../../rdkit/rdBase.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 25%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.cpp [ 25%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target rdBase make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target rdGeometry [ 25%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2018.09.1 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/MolDiscriminators.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend Scanning dependencies of target Trajectory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend Scanning dependencies of target Subgraphs make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructMatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build Scanning dependencies of target MolTransforms make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DTrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= Scanning dependencies of target PartialCharges Scanning dependencies of target MolInterchange make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target SmilesParse make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.cpp make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o Scanning dependencies of target MolCatalog cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.cpp [ 25%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructMatch_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.cpp make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubgraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.cpp [ 25%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o Scanning dependencies of target rdChemicalFeatures cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Writer.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build [ 25%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o Scanning dependencies of target SLNParse cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Parser.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build [ 25%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o [ 25%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o Scanning dependencies of target rdqueries make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.cpp [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o [ 26%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o [ 26%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdqueries.cpp [ 26%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp [ 26%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp [ 27%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.cpp [ 27%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.cpp [ 27%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 27%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 CMakeFiles/Trajectory.dir/Trajectory.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 27%] Built target MolTransforms make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= [ 27%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.cpp Scanning dependencies of target rdMolTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 27%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolTransforms_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp [ 28%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdqueries_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Queries.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 28%] Built target Trajectory make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ShapeHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 28%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp [ 28%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so [ 29%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 29%] Built target MolCatalog make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= [ 29%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 Scanning dependencies of target rdtrajectory make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 29%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Trajectory.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 29%] Built target Subgraphs [ 29%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/CXSmilesOps.cpp [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smarts.tab.cpp [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smiles.tab.cpp [ 30%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmarts.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Built target MolInterchange make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= Scanning dependencies of target Optimizer make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.cpp [ 30%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/LinearSearch.cpp [ 30%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Built target SubstructMatch make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolInterchange make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolInterchange_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp [ 31%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 31%] Built target ShapeHelpers make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= Scanning dependencies of target Depictor make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 31%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, std::__cxx11::list*, void*, int, const char*)': smiles.yy:38:29: warning: unused parameter 'input' [-Wunused-parameter] smiles.yy:40:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] smiles.yy:41:31: warning: unused parameter 'lastBond' [-Wunused-parameter] smiles.yy:42:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] smiles.yy:43:9: warning: unused parameter 'scanner' [-Wunused-parameter] smiles.yy:43:21: warning: unused parameter 'start_token' [-Wunused-parameter] smiles.yy: In function 'void yysmiles_error(const char*, std::vector*, std::__cxx11::list*, void*, int, const char*)': smiles.yy:50:29: warning: unused parameter 'input' [-Wunused-parameter] smiles.yy:52:42: warning: unused parameter 'branchPoints' [-Wunused-parameter] smiles.yy:53:9: warning: unused parameter 'scanner' [-Wunused-parameter] smiles.yy:53:21: warning: unused parameter 'start_token' [-Wunused-parameter] cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.cpp smarts.yy: In function 'void yysmarts_error(const char*, std::vector*, RDKit::Atom*&, RDKit::Bond*&, void*, int, const char*)': smarts.yy:24:29: warning: unused parameter 'input' [-Wunused-parameter] smarts.yy:25:46: warning: unused parameter 'ms' [-Wunused-parameter] smarts.yy:26:31: warning: unused parameter 'lastAtom' [-Wunused-parameter] smarts.yy:27:31: warning: unused parameter 'lastBond' [-Wunused-parameter] smarts.yy:28:9: warning: unused parameter 'scanner' [-Wunused-parameter] smarts.yy:28:21: warning: unused parameter 'start_token' [-Wunused-parameter] [ 31%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/sln.tab.cpp [ 31%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 31%] Built target PartialCharges make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdShapeHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 31%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdShapeHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp [ 31%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdtrajectory_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdTrajectory.cpp [ 32%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2018.09.1 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Built target Optimizer make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= Scanning dependencies of target testOptimizer make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/testOptimizer.cpp [ 32%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../../lib/libRDKitChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSmilesParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/lex.yysmiles.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Built target rdChemicalFeatures make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= Scanning dependencies of target ForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.cpp make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= [ 33%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/lex.yysln.cpp Scanning dependencies of target rdPartialCharges make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 34%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdPartialCharges_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.cpp sln.yy: In function 'void yysln_error(const char*, std::vector*, bool, void*, const char*)': sln.yy:60:43: warning: unused parameter 'ms' [-Wunused-parameter] sln.yy:60:51: warning: unused parameter 'doQ' [-Wunused-parameter] sln.yy:61:13: warning: unused parameter 'scanner' [-Wunused-parameter] [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.cpp [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.cpp [ 34%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.cpp /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yy_fatal_error(const char*, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2585:58: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_alloc(yy_size_t, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2917:47: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void* yysln_realloc(void*, yy_size_t, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2922:62: warning: unused parameter 'yyscanner' [-Wunused-parameter] /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp: In function 'void yysln_free(void*, yyscan_t)': /Users/landrgr1/RDKit_git/Code/GraphMol/SLNParse/lex.yysln.cpp:2934:40: warning: unused parameter 'yyscanner' [-Wunused-parameter] make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 34%] Built target rdMolTransforms [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.cpp [ 34%] Linking CXX executable testOptimizer cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer && /usr/bin/cmake -E cmake_link_script CMakeFiles/testOptimizer.dir/link.txt --verbose=1 [ 34%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testOptimizer.dir/testOptimizer.cpp.o -o testOptimizer ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 34%] Built target testOptimizer [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 35%] Built target rdtrajectory [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.cpp [ 35%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.cpp [ 35%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o ../../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 35%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 35%] Built target rdMolInterchange [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.cpp [ 35%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.cpp [ 35%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2018.09.1 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.cpp [ 36%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp:13: /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'boost::python::tuple RDKit::getUnionOfTwoBox(boost::python::tuple, boost::python::tuple)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:31: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:43: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:56:55: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] : Point(other), x(other.x), y(other.y), z(other.z) {} ~~~~~~^ cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 36%] Built target SLNParse [ 36%] Built target rdPartialCharges make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 37%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DDepictor_EXPORTS -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.cpp [ 37%] Built target SmilesParse [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolMemTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 37%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/memtest1.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.cpp [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.cpp [ 37%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 38%] Built target rdqueries make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestCanon make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= [ 38%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testCanon.cpp Scanning dependencies of target test-valgrind make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 39%] Building CXX object Code/GraphMol/CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test-valgrind.cpp [ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.cpp [ 39%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o ../../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/c++ -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= [ 39%] Built target rdShapeHelpers make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolqueryTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target graphmolIterTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 40%] Building CXX object Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/querytest.cpp [ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolIterTest.dir/itertest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/itertest.cpp make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolcpTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 41%] Building CXX object Code/GraphMol/CMakeFiles/graphmolcpTest.dir/cptest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/cptest.cpp make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target ChemTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.cpp [ 41%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.cpp make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest2 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest2.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test2.cpp make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smaTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/smatest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smaTest1.dir/smatest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/smatest.cpp make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FilterCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 43%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.cpp [ 43%] Linking CXX executable test-valgrind cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/test-valgrind.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/test-valgrind.dir/test-valgrind.cpp.o -o test-valgrind ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 43%] Linking CXX executable graphmolMemTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMemTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMemTest1.dir/memtest1.cpp.o -o graphmolMemTest1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target Fingerprints make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.cpp [ 44%] Built target test-valgrind make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testSubgraphs1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target graphmolMemTest1 make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= [ 44%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test1.cpp Scanning dependencies of target testSubgraphs2 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubgraphs2.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/test2.cpp [ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.cpp [ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp [ 44%] Linking CXX executable graphmoltestCanon cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestCanon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestCanon.dir/testCanon.cpp.o -o graphmoltestCanon ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target graphmoltestCanon make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target FragCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp [ 44%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2018.09.1 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target Depictor make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= Scanning dependencies of target testPartialCharges make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testPartialCharges.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/test1.cpp [ 44%] Linking CXX executable smiTest2 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest2.dir/test2.cpp.o -o smiTest2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target smiTest2 make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target MolChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp [ 44%] Linking CXX executable graphmolIterTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolIterTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolIterTest.dir/itertest.cpp.o -o graphmolIterTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 44%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target graphmolIterTest make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target ReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp [ 44%] Linking CXX executable graphmolcpTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolcpTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolcpTest.dir/cptest.cpp.o -o graphmolcpTest ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 44%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2018.09.1 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target graphmolcpTest make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target testSLNParse make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSLNParse.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/test.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target ForceField make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= Scanning dependencies of target rdSLNParse make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSLNParse_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp [ 44%] Linking CXX executable testSubgraphs1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs1.dir/test1.cpp.o -o testSubgraphs1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target testSubgraphs1 make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= [ 44%] Linking CXX executable testPartialCharges cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges && /usr/bin/cmake -E cmake_link_script CMakeFiles/testPartialCharges.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testPartialCharges.dir/test1.cpp.o -o testPartialCharges ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser Scanning dependencies of target FileParsers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/Mol2FileParser.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Built target testPartialCharges make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target ForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 44%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp [ 45%] Linking CXX executable testSubgraphs2 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubgraphs2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubgraphs2.dir/test2.cpp.o -o testSubgraphs2 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 45%] Built target testSubgraphs2 [ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.cpp [ 46%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp [ 46%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/PatternFingerprints.cpp [ 46%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp [ 46%] Linking CXX executable graphmolqueryTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolqueryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolqueryTest.dir/querytest.cpp.o -o graphmolqueryTest ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 46%] Built target graphmolqueryTest [ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp [ 46%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.cpp [ 47%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 47%] Built target ChemTransforms [ 47%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileParser.cpp make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= Scanning dependencies of target rdchem make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 48%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdchem.cpp [ 49%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o ../../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 49%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 [ 49%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 49%] Built target rdSLNParse [ 49%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Built target ReducedGraphs [ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.cpp make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= Scanning dependencies of target testReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReducedGraphs.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/test1.cpp [ 49%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= [ 49%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileWriter.cpp Scanning dependencies of target rdReducedGraphs make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 49%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdReducedGraphs_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp [ 49%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.cpp [ 50%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp [ 50%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp [ 51%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp [ 51%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 51%] Linking CXX executable testReducedGraphs cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReducedGraphs.dir/test1.cpp.o -o testReducedGraphs ../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 51%] Built target testReducedGraphs cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDMolSupplier.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 51%] Built target FilterCatalog [ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.cpp [ 51%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SDWriter.cpp [ 51%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 51%] Built target FragCatalog [ 51%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp [ 51%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp [ 51%] Linking CXX executable smaTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smaTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smaTest1.dir/smatest.cpp.o -o smaTest1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 51%] Built target smaTest1 [ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp [ 52%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o ../../../../lib/libRDKitReducedGraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 52%] Built target rdReducedGraphs [ 52%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Table.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Table.cpp [ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:329:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] if (val.second >= dp_fingerprintArguments->d_countBounds[i]) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'SparseBitVect* RDKit::FingerprintGenerator::getSparseFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:337:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:230:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:360:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] if (val.second >= dp_fingerprintArguments->d_countBounds[i]) { ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp: In instantiation of 'ExplicitBitVect* RDKit::FingerprintGenerator::getFingerprint(const RDKit::ROMol&, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:367:61: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp:293:24: warning: comparison of integer expressions of different signedness: 'int' and 'const value_type' {aka 'const unsigned int'} [-Wsign-compare] [ 52%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SmilesWriter.cpp [ 52%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTMolSupplier.cpp [ 53%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TDTWriter.cpp [ 53%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:140:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'std::vector*> RDKit::AtomPair::AtomPairEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:133:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:140:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp: In instantiation of 'OutputType RDKit::AtomPair::AtomPairAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:83:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp:86:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] [ 53%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Atom.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:409:57: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter 'ownsBondInvGen' [-Wunused-parameter] const bool ownsAtomInvGen, const bool ownsBondInvGen) { ~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganFingerprint::getMorganGenerator(unsigned int, bool, bool, bool, bool, RDKit::AtomInvariantsGenerator*, RDKit::BondInvariantsGenerator*, uint32_t, std::vector, bool, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:418:57: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:376:43: warning: unused parameter 'ownsBondInvGen' [-Wunused-parameter] /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:160:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'std::vector*> RDKit::MorganFingerprint::MorganEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:156:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:159:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:160:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:163:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 54%] Linking CXX executable testSLNParse cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSLNParse.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSLNParse.dir/test.cpp.o -o testSLNParse ../../../lib/libRDKitSLNParse.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp: In instantiation of 'OutputType RDKit::MorganFingerprint::MorganAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:136:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:137:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:138:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:139:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.cpp:140:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 54%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp [ 54%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 54%] Built target testSLNParse [ 54%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/c++ -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp [ 55%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 55%] Built target MolChemicalFeatures make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolChemicalFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:115:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:117:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'std::vector*> RDKit::RDKitFP::RDKitFPEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:111:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:39: warning: unused parameter 'ignoreAtoms' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:114:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:115:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:117:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:118:16: warning: unused parameter 'hashResults' [-Wunused-parameter] const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileParser.cpp [ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Bond.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:92:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:93:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp: In instantiation of 'OutputType RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:90:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:91:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:92:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:93:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp:94:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Mol.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/TplFileWriter.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:11: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(bool, uint32_t, bool, std::vector, uint32_t) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:161:7: required from 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(bool, uint32_t, RDKit::AtomInvariantsGenerator*, bool, std::vector, uint32_t, bool) [with OutputType = long unsigned int; uint32_t = unsigned int]' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:183:58: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:26:18: warning: 'RDKit::TopologicalTorsion::TopologicalTorsionArguments::d_torsionAtomCount' will be initialized after [-Wreorder] const uint32_t d_torsionAtomCount; ^~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:27:76: warning: base 'RDKit::FingerprintArguments' [-Wreorder] FingerprintArguments(countSimulation, countBounds, fpSize){}; ^ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:21:1: warning: when initialized here [-Wreorder] TopologicalTorsionArguments::TopologicalTorsionArguments( ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'std::vector*> RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator::getEnvironments(const RDKit::ROMol&, RDKit::FingerprintArguments*, const std::vector*, const std::vector*, int, const RDKit::AdditionalOutput*, const std::vector*, const std::vector*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:58:1: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:61:62: warning: unused parameter 'confId' [-Wunused-parameter] const std::vector *ignoreAtoms, const int confId, ~~~~~~~~~~^~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:62:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:64:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp: In instantiation of 'OutputType RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(RDKit::FingerprintArguments*, const std::vector*, const std::vector*, const RDKit::AdditionalOutput*, bool) const [with OutputType = long unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:43:12: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:44:39: warning: unused parameter 'arguments' [-Wunused-parameter] FingerprintArguments *arguments, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:45:39: warning: unused parameter 'atomInvariants' [-Wunused-parameter] const std::vector *atomInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:46:39: warning: unused parameter 'bondInvariants' [-Wunused-parameter] const std::vector *bondInvariants, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:29: warning: unused parameter 'additionalOutput' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp:47:58: warning: unused parameter 'hashResults' [-Wunused-parameter] const AdditionalOutput *additionalOutput, const bool hashResults) const { ~~~~~~~~~~~^~~~~~~~~~~ [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBParser.cpp [ 55%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/Conformer.cpp [ 55%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBWriter.cpp [ 55%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/PDBSupplier.cpp [ 56%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/RingInfo.cpp [ 56%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MaeMolSupplier.cpp [ 57%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolChemicalFeatures_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 57%] Built target Fingerprints make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= Scanning dependencies of target rdFingerprintGenerator make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 57%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFingerprintGenerator_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp [ 57%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 57%] Built target ForceFieldHelpers make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target SubstructLibrary make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 57%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.cpp [ 57%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SVGParser.cpp [ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/EditableMol.cpp [ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MonomerInfo.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp: In function 'const std::vector RDKit::FingerprintWrapper::convertPyArgumentsForBulk(const boost::python::list&)': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:190:25: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for (int i = 0; i < len; i++) { ~~^~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:17: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::MorganWrapper::getMorganGenerator(unsigned int, bool, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:121:63: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/MorganWrapper.cpp:24:50: warning: unused parameter 'includeRingMembership' [-Wunused-parameter] const bool onlyNonzeroInvariants, const bool includeRingMembership, ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:18: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::RDKitFPWrapper::getRDKitFPGenerator(unsigned int, unsigned int, bool, bool, bool, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:92:63: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/RDKitFPWrapper.cpp:27:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp:19: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp: In instantiation of 'RDKit::FingerprintGenerator* RDKit::TopologicalTorsionWrapper::getTopologicalTorsionFPGenerator(bool, uint32_t, bool, boost::python::api::object&, uint32_t, boost::python::api::object&) [with OutputType = long unsigned int; uint32_t = unsigned int]': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:75:63: required from here /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap/TopologicalTorsionWrapper.cpp:26:28: warning: unused variable 'bondInvariantsGenerator' [-Wunused-variable] BondInvariantsGenerator *bondInvariantsGenerator = nullptr; ^~~~~~~~~~~~~~~~~~~~~~~ [ 57%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp [ 58%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o ../../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 58%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdchem_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolBundle.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 58%] Built target rdMolChemicalFeatures make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= Scanning dependencies of target DistGeometry make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target MolAlign make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 58%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.cpp [ 58%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.cpp [ 58%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.cpp make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceField_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap/ForceField.cpp make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target rdForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdForceFieldHelpers_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp [ 60%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Built target SubstructLibrary [ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.cpp [ 60%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp [ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.cpp [ 60%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2018.09.1 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 60%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Built target DistGeometry make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target DistGeomHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target DistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build [ 60%] Building CXX object Code/DistGeom/CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/c++ -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/testDistGeom.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp [ 60%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o [ 60%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/c++ -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap/DistGeom.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Built target FileParsers make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target graphmolMolOpsTest Scanning dependencies of target graphmolTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Building CXX object Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/testUFFForceField.cpp [ 60%] Building CXX object Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/molopstest.cpp [ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/test1.cpp make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestChirality make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testChirality.cpp [ 61%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target rdFingerprintGenerator make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPickler make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testPickler.cpp make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= Scanning dependencies of target molBundleTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testMolBundle.cpp make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= Scanning dependencies of target resMolSupplierTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/resMolSupplierTest.cpp make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= Scanning dependencies of target graphmoltestPicklerGlobalSetting make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/testPicklerGlobalSettings.cpp [ 62%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2018.09.1 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o CMakeFiles/MolAlign.dir/O3AAlignMolecules.cpp.o ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Built target MolAlign make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= Scanning dependencies of target hanoiTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/hanoiTest.dir/hanoitest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/hanoitest.cpp [ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Built target rdForceFieldHelpers make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= Scanning dependencies of target graphmolTestsCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/catch_tests.cpp [ 62%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Built target DistGeom make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target testDepictor make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/testDepictor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/c++ -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDepictor.dir/testDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/testDepictor.cpp [ 62%] Linking CXX executable testDistGeom cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeom.dir/testDistGeom.cpp.o -o testDistGeom ../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Built target testDistGeom make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= Scanning dependencies of target rdDepictor make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDepictor_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= Scanning dependencies of target smiTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTest1.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/test.cpp [ 62%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 63%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 63%] Linking CXX executable testUFFForceField cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceField.dir/testUFFForceField.cpp.o -o testUFFForceField ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target DistGeomHelpers make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target cxsmilesTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target testUFFForceField make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= [ 63%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/cxsmiles_test.cpp Scanning dependencies of target smiTestCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/catch_tests.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target rdchem make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= Scanning dependencies of target testMol2ToMol make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMol2ToMol.cpp [ 63%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target rdForceField make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= Scanning dependencies of target testExtendedStereoParsing make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testExtendedStereoParsing.cpp [ 64%] Linking CXX executable resMolSupplierTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/resMolSupplierTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/resMolSupplierTest.dir/resMolSupplierTest.cpp.o -o resMolSupplierTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Built target resMolSupplierTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= Scanning dependencies of target testMolWriter make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolWriter.cpp [ 64%] Linking CXX executable molBundleTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/molBundleTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molBundleTest.dir/testMolBundle.cpp.o -o molBundleTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Built target molBundleTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= Scanning dependencies of target testMolSupplier make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testMolSupplier.cpp [ 64%] Linking CXX executable graphmoltestPicklerGlobalSetting cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPicklerGlobalSetting.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPicklerGlobalSetting.dir/testPicklerGlobalSettings.cpp.o -o graphmoltestPicklerGlobalSetting ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 64%] Linking CXX executable testDepictor cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDepictor.dir/testDepictor.cpp.o -o testDepictor ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Built target testDepictor make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= Scanning dependencies of target fileParsersCatchTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/catch_tests.cpp Scanning dependencies of target fileParsersTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/fileParsersTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/test1.cpp [ 65%] Linking CXX executable testMol2ToMol cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMol2ToMol.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMol2ToMol.dir/testMol2ToMol.cpp.o -o testMol2ToMol ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target testMol2ToMol make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= Scanning dependencies of target testTplParser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/testTpls.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testTplParser.dir/testTpls.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testTpls.cpp [ 65%] Linking CXX executable testExtendedStereoParsing cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testExtendedStereoParsing.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testExtendedStereoParsing.dir/testExtendedStereoParsing.cpp.o -o testExtendedStereoParsing ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target testExtendedStereoParsing make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= Scanning dependencies of target testSequence make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/testSequence.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSequence.dir/testSequence.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/testSequence.cpp [ 65%] Linking CXX executable hanoiTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/hanoiTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/hanoiTest.dir/hanoitest.cpp.o -o hanoiTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 65%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target hanoiTest make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= Scanning dependencies of target testSubstructMatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testSubstructMatch.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/test1.cpp [ 65%] Built target rdDepictor make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= Scanning dependencies of target Descriptors make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.cpp [ 65%] Linking CXX executable graphmolTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTest1.dir/test1.cpp.o -o graphmolTest1 ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../lib/libRDKitForceField.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 65%] Linking CXX executable cxsmilesTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/cxsmilesTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/cxsmilesTest.dir/cxsmiles_test.cpp.o -o cxsmilesTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target graphmolTest1 make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= Scanning dependencies of target testChemTransforms make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 65%] Built target cxsmilesTest make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= [ 66%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/c++ -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/testChemTransforms.cpp Scanning dependencies of target filterCatalogTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 66%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/filtercatalogtest.cpp [ 66%] Linking CXX executable graphmoltestPickler cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestPickler.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestPickler.dir/testPickler.cpp.o -o graphmoltestPickler ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 66%] Built target graphmoltestPickler make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfiltercatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp [ 67%] Linking CXX executable testSequence cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSequence.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSequence.dir/testSequence.cpp.o -o testSequence ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target testSequence make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testFragCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFragCatalog.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/test1.cpp [ 67%] Linking CXX executable testTplParser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testTplParser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testTplParser.dir/testTpls.cpp.o -o testTplParser ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target testTplParser make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdfragcatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp [ 67%] Linking CXX executable graphmoltestChirality cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmoltestChirality.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmoltestChirality.dir/testChirality.cpp.o -o graphmoltestChirality ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target graphmoltestChirality make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprints make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 68%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprints.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/test1.cpp [ 68%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfiltercatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp [ 68%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.cpp [ 69%] Linking CXX executable testMolSupplier cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolSupplier.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolSupplier.dir/testMolSupplier.cpp.o -o testMolSupplier ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target testMolSupplier make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= Scanning dependencies of target testFingerprintGenerators make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp [ 69%] Linking CXX executable testMolWriter cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolWriter.dir/link.txt --verbose=1 [ 69%] Linking CXX executable filterCatalogTest /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolWriter.dir/testMolWriter.cpp.o -o testMolWriter ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/filterCatalogTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/filterCatalogTest.dir/filtercatalogtest.cpp.o -o filterCatalogTest ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target testMolWriter make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target filterCatalogTest make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend Scanning dependencies of target testMolTransforms make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolTransforms.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/test1.cpp Scanning dependencies of target testMMFFForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/testMMFFHelpers.cpp [ 69%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h:21, from /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:12: /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function 'void testAtomPairNonSparseBitvector()': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:225:42: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits, unsigned int>::value_type' {aka 'unsigned int'} [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT' if (!(expr)) { \ ^~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:242:42: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits, unsigned int>::value_type' {aka 'unsigned int'} [-Wsign-compare] TEST_ASSERT(isSet == (it->second >= defaultCountBounds[i])); /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h:152:9: note: in definition of macro 'TEST_ASSERT' if (!(expr)) { \ ^~~~ /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp: In function 'void testBulkFP()': /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/testFingerprintGenerators.cpp:2388:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector*>::size_type' {aka 'long unsigned int'} [-Wsign-compare] for (int i = 0; i < results->size(); i++) { ~~^~~~~~~~~~~~~~~~~ [ 69%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.cpp [ 69%] Linking CXX executable testFragCatalog cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFragCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFragCatalog.dir/test1.cpp.o -o testFragCatalog ../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target testFragCatalog make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testUFFForceFieldHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/testUFFHelpers.cpp [ 69%] Linking CXX executable testSubstructMatch cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct && /usr/bin/cmake -E cmake_link_script CMakeFiles/testSubstructMatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testSubstructMatch.dir/test1.cpp.o -o testSubstructMatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target testSubstructMatch make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testCrystalForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/testCrystalFF.cpp [ 69%] Linking CXX executable testChemTransforms cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testChemTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testChemTransforms.dir/testChemTransforms.cpp.o -o testChemTransforms ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 69%] Linking CXX executable testMolTransforms cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolTransforms.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolTransforms.dir/test1.cpp.o -o testMolTransforms ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target testChemTransforms make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testDistGeomHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/c++ -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/testDgeomHelpers.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target testMolTransforms make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= Scanning dependencies of target rdDistGeom make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdDistGeom_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp [ 70%] Linking CXX executable smiTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTest1.dir/test.cpp.o -o smiTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target smiTest1 make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= Scanning dependencies of target testFeatures make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/testFeatures.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFeatures.dir/testFeatures.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/testFeatures.cpp [ 70%] Linking CXX executable testMMFFForceFieldHelpers cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceFieldHelpers.dir/testMMFFHelpers.cpp.o -o testMMFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target testMMFFForceFieldHelpers make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= Scanning dependencies of target testShapeHelpers make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/testShapeHelpers.cpp [ 70%] Linking CXX executable testCrystalForceField cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testCrystalForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testCrystalForceField.dir/testCrystalFF.cpp.o -o testCrystalForceField ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target testCrystalForceField make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target testMolCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolCatalog.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/test1.cpp [ 70%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.cpp [ 70%] Linking CXX executable testShapeHelpers cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testShapeHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testShapeHelpers.dir/testShapeHelpers.cpp.o -o testShapeHelpers ../../../lib/libRDKitShapeHelpers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 70%] Built target testShapeHelpers make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolCatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolCatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp [ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp [ 71%] Linking CXX executable testFingerprintGenerators cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprintGenerators.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprintGenerators.dir/testFingerprintGenerators.cpp.o -o testFingerprintGenerators ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target testFingerprintGenerators make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= Scanning dependencies of target FMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.cpp [ 71%] Linking CXX executable testUFFForceFieldHelpers cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testUFFForceFieldHelpers.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testUFFForceFieldHelpers.dir/testUFFHelpers.cpp.o -o testUFFForceFieldHelpers ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target testUFFForceFieldHelpers make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= Scanning dependencies of target MMPA make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.cpp [ 71%] Linking CXX executable testFeatures cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFeatures.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFeatures.dir/testFeatures.cpp.o -o testFeatures ../../../lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target testFeatures make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/trajectoryTest.cpp [ 71%] Linking CXX executable testDistGeomHelpers cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDistGeomHelpers.dir/link.txt --verbose=1 [ 72%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDistGeomHelpers.dir/testDgeomHelpers.cpp.o -o testDistGeomHelpers ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 72%] Linking CXX executable testMolCatalog cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolCatalog.dir/test1.cpp.o -o testMolCatalog ../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target testDistGeomHelpers make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= Scanning dependencies of target substructLibraryTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/substructLibraryTest.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target testMolCatalog make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target rdSubstructLibrary make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp [ 72%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdSubstructLibrary_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp [ 73%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp [ 73%] Linking CXX executable smiTestCatch cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse && /usr/bin/cmake -E cmake_link_script CMakeFiles/smiTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/smiTestCatch.dir/catch_tests.cpp.o -o smiTestCatch ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser [ 73%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o ../../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target rdDistGeom make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= Scanning dependencies of target molInterchangeTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/rapidjson -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/test1.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target smiTestCatch [ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.cpp [ 73%] Linking CXX executable testFingerprints cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFingerprints.dir/test1.cpp.o -o testFingerprints ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target testFingerprints make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolfiles make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolfiles.cpp [ 73%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2018.09.1 CMakeFiles/MMPA.dir/MMPA.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target MMPA [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp [ 74%] Linking CXX executable trajectoryTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/trajectoryTest.dir/trajectoryTest.cpp.o -o trajectoryTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 74%] Linking CXX executable substructLibraryTest [ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary && /usr/bin/cmake -E cmake_link_script CMakeFiles/substructLibraryTest.dir/link.txt --verbose=1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/substructLibraryTest.dir/substructLibraryTest.cpp.o -o substructLibraryTest ../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o ../../../../lib/libRDKitMolCatalog.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target trajectoryTest make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= Scanning dependencies of target testMMFFForceField make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 75%] Building CXX object Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -c /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/testMMFFForceField.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 75%] Built target substructLibraryTest make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend [ 75%] Built target rdMolCatalog make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= Scanning dependencies of target testMMPA make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target rdMMPA [ 75%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA_UnitTest.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMMPA_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.cpp [ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp [ 76%] Linking CXX executable graphmolTestsCatch cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolTestsCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolTestsCatch.dir/catch_tests.cpp.o -o graphmolTestsCatch ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 76%] Linking CXX executable fileParsersCatchTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersCatchTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/fileParsersCatchTest.dir/catch_tests.cpp.o -o fileParsersCatchTest ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target graphmolTestsCatch [ 76%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.cpp [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target fileParsersCatchTest [ 76%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdfragcatalog_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp [ 76%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 76%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MaeMolSupplier.cpp [ 76%] Linking CXX executable fileParsersTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileParsersTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/fileParsersTest1.dir/test1.cpp.o -o fileParsersTest1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lmaeparser ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target rdfiltercatalog [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.cpp [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDMolSupplier.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target fileParsersTest1 [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTMolSupplier.cpp [ 77%] Linking CXX executable testMMPA cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMPA.dir/MMPA_UnitTest.cpp.o -o testMMPA ../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target testMMPA [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp [ 77%] Linking CXX executable molInterchangeTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange && /usr/bin/cmake -E cmake_link_script CMakeFiles/molInterchangeTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molInterchangeTest1.dir/test1.cpp.o -o molInterchangeTest1 ../../../lib/libRDKitMolInterchange.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lpthread -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target molInterchangeTest1 [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesMolSupplier.cpp [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SmilesWriter.cpp [ 77%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o ../../../../lib/libRDKitMMPA.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target rdMMPA [ 77%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/SDWriter.cpp [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.cpp [ 78%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/TDTWriter.cpp [ 79%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolfiles_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/PDBWriter.cpp [ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o ../../../../lib/libRDKitSubstructLibrary.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target rdSubstructLibrary [ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o ../../../../lib/libRDKitFragCatalog.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 79%] Linking CXX executable testMMFFForceField cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMMFFForceField.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMMFFForceField.dir/testMMFFForceField.cpp.o -o testMMFFForceField ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target rdfragcatalog make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target testMMFFForceField [ 79%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2018.09.1 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Built target FMCS make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target rdFMCS Scanning dependencies of target FMCStest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build Scanning dependencies of target testFMCS make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build Scanning dependencies of target RGroupDecomposition make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 79%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdFMCS_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp [ 79%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DRGroupDecomposition_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp [ 79%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/testFMCS_Unit.cpp [ 80%] Building CXX object Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/testFMCS.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/FMCStest.dir/testFMCS.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test/testFMCS.cpp [ 80%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 80%] Built target Descriptors make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= Scanning dependencies of target testAUTOCORR2D make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build Scanning dependencies of target testDescriptors make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build Scanning dependencies of target testMolAlign make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build Scanning dependencies of target rdMolDescriptors Scanning dependencies of target MolHash make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target rdMolAlign make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/test.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testDescriptors.dir/test.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/test.cpp [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o [ 80%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/testMolAlign.cpp [ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/MolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/MolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/c++ -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/testAUTOCORR2D.cpp Scanning dependencies of target ChemReactions [ 81%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 81%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDescriptors_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolAlign_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.cpp [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MDLParser.cpp [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/DaylightParser.cpp make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= Scanning dependencies of target StructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructChecker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.cpp [ 82%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target rdmolfiles [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp [ 82%] Linking CXX executable graphmolMolOpsTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol && /usr/bin/cmake -E cmake_link_script CMakeFiles/graphmolMolOpsTest.dir/link.txt --verbose=1 [ 82%] Linking CXX executable FMCStest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test && /usr/bin/cmake -E cmake_link_script CMakeFiles/FMCStest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/graphmolMolOpsTest.dir/molopstest.cpp.o -o graphmolMolOpsTest ../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../lib/libRDKitDepictor.so.1.2018.09.1 ../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/FMCStest.dir/testFMCS.cpp.o -o FMCStest ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target FMCStest [ 82%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StructureFlags.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructureFlags.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target graphmolMolOpsTest [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.cpp [ 82%] Linking CXX executable testFMCS cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS && /usr/bin/cmake -E cmake_link_script CMakeFiles/testFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testFMCS.dir/testFMCS_Unit.cpp.o -o testFMCS ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target testFMCS [ 82%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/HashToString.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolHash.dir/HashToString.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/HashToString.cpp [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionWriter.cpp [ 82%] Linking CXX executable testAUTOCORR2D cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testAUTOCORR2D.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testAUTOCORR2D.dir/testAUTOCORR2D.cpp.o -o testAUTOCORR2D ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target testAUTOCORR2D [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionDepict.cpp [ 83%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Utilites.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Utilites.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.cpp /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp: In function 'bool RDKit::StructureCheck::ReadAAPairs(const string&, std::vector >&)': /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.cpp:354:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] fscanf(fp, "%d", &n); ~~~~~~^~~~~~~~~~~~~~ [ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 85%] Linking CXX executable testMolAlign cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolAlign.dir/link.txt --verbose=1 [ 85%] Built target rdFMCS /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolAlign.dir/testMolAlign.cpp.o -o testMolAlign ../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDistGeomHelpers.so.1.2018.09.1 ../../../lib/libRDKitDistGeometry.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target testMolAlign [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/MoleculeParser.cpp [ 85%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target RGroupDecomposition [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Pattern.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Pattern.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.cpp [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.cpp [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Stereo.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Stereo.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.cpp [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.cpp [ 85%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.cpp [ 85%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2018.09.1 CMakeFiles/MolHash.dir/MolHash.cpp.o CMakeFiles/MolHash.dir/HashToString.cpp.o ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 85%] Built target MolHash make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= Scanning dependencies of target testRGroupDecomp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 85%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/testRGroupDecomp.cpp [ 85%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/AtomSymbolMatch.cpp [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp [ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.cpp [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp [ 86%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= Scanning dependencies of target rdRGroupDecomposition make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 86%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdRGroupDecomposition_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp [ 86%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/ReCharge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/ReCharge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.cpp [ 86%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o ../../../../lib/libRDKitMolAlign.so.1.2018.09.1 ../../../../lib/libRDKitForceFieldHelpers.so.1.2018.09.1 ../../../../lib/libRDKitForceField.so.1.2018.09.1 ../../../../lib/libRDKitAlignment.so.1.2018.09.1 ../../../../lib/libRDKitOptimizer.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitTrajectory.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/Tautomer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/StructChecker.dir/Tautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target rdMolAlign make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target testMolHash make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/testMolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testMolHash.dir/testMolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/testMolHash.cpp make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolHash make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolHash_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp In file included from /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h:14, from /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h:36, from /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h:19, from /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp:12: /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributionsFromPoints(boost::python::api::object, boost::python::api::object)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:86:15: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] y = other.y; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h: In function 'boost::python::list {anonymous}::GetUSRDistributions(boost::python::api::object, boost::python::api::object)': /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:85:15: warning: '*((void*)(&)+32).RDGeom::Point3D::x' may be used uninitialized in this function [-Wmaybe-uninitialized] x = other.x; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:86:15: warning: '*((void*)(&)+32).RDGeom::Point3D::y' may be used uninitialized in this function [-Wmaybe-uninitialized] y = other.y; ~~~~~~^ /build/rdkit-201809.1+dfsg/Code/Geometry/point.h:87:15: warning: '*((void*)(&)+32).RDGeom::Point3D::z' may be used uninitialized in this function [-Wmaybe-uninitialized] z = other.z; ~~~~~~^ [ 87%] Linking CXX executable testRGroupDecomp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition && /usr/bin/cmake -E cmake_link_script CMakeFiles/testRGroupDecomp.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testRGroupDecomp.dir/testRGroupDecomp.cpp.o -o testRGroupDecomp ../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target testRGroupDecomp [ 87%] Linking CXX executable testDescriptors cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors && /usr/bin/cmake -E cmake_link_script CMakeFiles/testDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testDescriptors.dir/test.cpp.o -o testDescriptors ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target testDescriptors [ 87%] Linking CXX shared library ../../../lib/libRDKitStructChecker.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/StructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitStructChecker.so.1 -o ../../../lib/libRDKitStructChecker.so.1.2018.09.1 CMakeFiles/StructChecker.dir/StructChecker.cpp.o CMakeFiles/StructChecker.dir/StructCheckerOptions.cpp.o CMakeFiles/StructChecker.dir/StructureFlags.cpp.o CMakeFiles/StructChecker.dir/Utilites.cpp.o CMakeFiles/StructChecker.dir/Pattern.cpp.o CMakeFiles/StructChecker.dir/Stereo.cpp.o CMakeFiles/StructChecker.dir/AtomSymbolMatch.cpp.o CMakeFiles/StructChecker.dir/StripSmallFragments.cpp.o CMakeFiles/StructChecker.dir/ReCharge.cpp.o CMakeFiles/StructChecker.dir/Tautomer.cpp.o ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 87%] Linking CXX executable testMolHash cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash && /usr/bin/cmake -E cmake_link_script CMakeFiles/testMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testMolHash.dir/testMolHash.cpp.o -o testMolHash ../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitStructChecker.so.1 ../../../lib/libRDKitStructChecker.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target StructChecker make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= [ 87%] Built target testMolHash Scanning dependencies of target rdStructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target testStructChecker make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Building CXX object Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/structchecker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdStructChecker_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdStructChecker.dir/structchecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap/structchecker.cpp [ 87%] Building CXX object Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_STRUCTCHECKER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/testStructChecker.cpp [ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o ../../../../lib/libRDKitMolHash.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target rdMolHash [ 88%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target ChemReactions make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target testReactionFingerprints make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build Scanning dependencies of target testEnumeration Scanning dependencies of target testReaction Scanning dependencies of target rxnTestCatch make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target rdChemReactions make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o [ 88%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/testReaction.cpp.o [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/testEnumerate.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReactionFingerprints.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/testReaction.dir/testReaction.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/testReaction.cpp Scanning dependencies of target MolDraw2D make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build [ 89%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/c++ -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/catch_tests.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp Scanning dependencies of target MolStandardize make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build [ 89%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdChemReactions_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.cpp [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.cpp [ 90%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o ../../../../lib/libRDKitRGroupDecomposition.so.1.2018.09.1 ../../../../lib/libRDKitFMCS.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target rdRGroupDecomposition [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.cpp [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.cpp [ 90%] Linking CXX executable testReactionFingerprints cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReactionFingerprints.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReactionFingerprints.dir/testReactionFingerprints.cpp.o -o testReactionFingerprints ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target testReactionFingerprints [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.cpp [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.cpp [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp [ 91%] Linking CXX executable testStructChecker cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker && /usr/bin/cmake -E cmake_link_script CMakeFiles/testStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testStructChecker.dir/testStructChecker.cpp.o -o testStructChecker ../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target testStructChecker [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp [ 91%] Linking CXX shared module ../../../../rdkit/Chem/rdStructChecker.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdStructChecker.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdStructChecker.so CMakeFiles/rdStructChecker.dir/structchecker.cpp.o ../../../../lib/libRDKitStructChecker.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target rdStructChecker [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp [ 91%] Linking CXX executable testEnumeration cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testEnumeration.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testEnumeration.dir/Enumerate/testEnumerate.cpp.o -o testEnumeration ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target testEnumeration [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp [ 92%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization [ 92%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target MolDraw2D make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= Scanning dependencies of target moldraw2DTest1 make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build Scanning dependencies of target moldraw2DRxnTest1 make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/test1.cpp [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/rxn_test1.cpp make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= Scanning dependencies of target rdMolDraw2D make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolDraw2D_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= Scanning dependencies of target rdmolops make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/rdmolops.cpp [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -Drdmolops_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap/MolOps.cpp [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target rdMolDescriptors [ 93%] Linking CXX executable moldraw2DRxnTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DRxnTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DRxnTest1.dir/rxn_test1.cpp.o -o moldraw2DRxnTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread [ 93%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target moldraw2DRxnTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Built target MolStandardize make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= Scanning dependencies of target molTautomerTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target molChargeTest make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target molValidateTest Scanning dependencies of target molFragmentTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build Scanning dependencies of target molNormalizeTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build Scanning dependencies of target molStandardizeSmallTest make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Scanning dependencies of target molStandardizeTest make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testTautomer.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/testFragment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testFragment.cpp [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/testCharge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molChargeTest.dir/testCharge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testCharge.cpp Scanning dependencies of target rdMolStandardize [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/test2.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/testValidate.cpp.o [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testNormalize.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molValidateTest.dir/testValidate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/testValidate.cpp make[4]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 93%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/test1.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -o CMakeFiles/molStandardizeTest.dir/test1.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/test1.cpp [ 93%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o [ 93%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Validate.cpp cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp [ 93%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Charge.cpp [ 94%] Linking CXX executable molNormalizeTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molNormalizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molNormalizeTest.dir/testNormalize.cpp.o -o molNormalizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 94%] Built target molNormalizeTest [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp [ 95%] Linking CXX executable molStandardizeSmallTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeSmallTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeSmallTest.dir/test2.cpp.o -o molStandardizeSmallTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target molStandardizeSmallTest [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp [ 96%] Linking CXX executable molChargeTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molChargeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molChargeTest.dir/testCharge.cpp.o -o molChargeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Linking CXX executable molFragmentTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molFragmentTest.dir/link.txt --verbose=1 [ 96%] Built target molChargeTest /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molFragmentTest.dir/testFragment.cpp.o -o molFragmentTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/c++ -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_TEST_MULTITHREADED -DRDK_THREADSAFE_SSS -DRDK_USE_STRICT_ROTOR_DEFINITION -DrdMolStandardize_EXPORTS -I/build/rdkit-201809.1+dfsg/External/catch/catch/single_include -I/build/rdkit-201809.1+dfsg/External -I/usr/include/python2.7 -I/build/rdkit-201809.1+dfsg/Code -I/build/rdkit-201809.1+dfsg/External/boost-numeric-bindings -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -fPIC -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap/Metal.cpp make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target molFragmentTest [ 97%] Linking CXX executable moldraw2DTest1 cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D && /usr/bin/cmake -E cmake_link_script CMakeFiles/moldraw2DTest1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/moldraw2DTest1.dir/test1.cpp.o -o moldraw2DTest1 ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target moldraw2DTest1 [ 97%] Linking CXX executable molValidateTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molValidateTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molValidateTest.dir/testValidate.cpp.o -o molValidateTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target molValidateTest [ 97%] Linking CXX executable molStandardizeTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molStandardizeTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molStandardizeTest.dir/test1.cpp.o -o molStandardizeTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target molStandardizeTest [ 97%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o ../../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 97%] Built target rdMolDraw2D [ 98%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target rdChemReactions [ 98%] Linking CXX executable rxnTestCatch cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/rxnTestCatch.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/rxnTestCatch.dir/catch_tests.cpp.o -o rxnTestCatch ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target rxnTestCatch [ 98%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o ../../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../../lib/libRDKitDataStructs.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target rdMolStandardize [ 98%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap && /usr/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o ../../../lib/libRDKitMolDraw2D.so.1.2018.09.1 ../../../lib/libRDKitRDBoost.so.1.2018.09.1 -lpython2.7 -lboost_python27 -lboost_serialization ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 -lcoordgenlibs -lmaeparser ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lboost_serialization make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 98%] Built target rdmolops [ 99%] Linking CXX executable testReaction cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions && /usr/bin/cmake -E cmake_link_script CMakeFiles/testReaction.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/testReaction.dir/testReaction.cpp.o -o testReaction ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lpthread -lcoordgenlibs -lmaeparser make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 99%] Built target testReaction [100%] Linking CXX executable molTautomerTest cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize && /usr/bin/cmake -E cmake_link_script CMakeFiles/molTautomerTest.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -Wl,-z,relro -rdynamic CMakeFiles/molTautomerTest.dir/testTautomer.cpp.o -o molTautomerTest ../../../lib/libRDKitMolStandardize.so.1.2018.09.1 ../../../lib/libRDKitChemReactions.so.1.2018.09.1 ../../../lib/libRDKitFilterCatalog.so.1.2018.09.1 ../../../lib/libRDKitCatalogs.so.1.2018.09.1 ../../../lib/libRDKitDescriptors.so.1.2018.09.1 ../../../lib/libRDKitFileParsers.so.1.2018.09.1 ../../../lib/libRDKitDepictor.so.1.2018.09.1 ../../../lib/libRDKitPartialCharges.so.1.2018.09.1 ../../../lib/libRDKitMolTransforms.so.1.2018.09.1 ../../../lib/libRDKitEigenSolvers.so.1.2018.09.1 ../../../lib/libRDKitFingerprints.so.1.2018.09.1 ../../../lib/libRDKitSubgraphs.so.1.2018.09.1 -lboost_serialization ../../../lib/libRDKitChemTransforms.so.1.2018.09.1 ../../../lib/libRDKitSmilesParse.so.1.2018.09.1 ../../../lib/libRDKitSubstructMatch.so.1.2018.09.1 ../../../lib/libRDKitGraphMol.so.1.2018.09.1 ../../../lib/libRDKitRDGeometryLib.so.1.2018.09.1 ../../../lib/libRDKitDataStructs.so.1.2018.09.1 ../../../lib/libRDKitRDGeneral.so.1.2018.09.1 -lcoordgenlibs -lmaeparser -lpthread make[4]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target molTautomerTest make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' STATIC_LINK=0 RDKIT_LIBDIR=/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//lib pg_buildext build /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v ### build 11 ### make[2]: Entering directory '/build/rdkit-201809.1+dfsg/build-11' gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rdkit_io.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_io.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o mol_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_murckoscaffold': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:253:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] CROMol scaffold = MolMurckoScaffold(mol); ^~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_hash': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:273:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *res = pnstrdup(str, len); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_adjust_query_properties': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:286:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *data = PG_GETARG_CSTRING(1); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:290:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] Mol *res = deconstructROMol(adj); ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'mol_to_svg': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:305:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *legend = PG_GETARG_CSTRING(1); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:329:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *res = pnstrdup(str, strlen(str)); ^~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol2s_transition': /usr/include/postgresql/11/server/fmgr.h:243:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:381:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:397:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] text *ts = (text *)palloc(ts_size); // new return value ^~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /usr/include/postgresql/11/server/fmgr.h:243:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:409:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:417:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] char *smiles = makeMolText(mol, &len, false); ^~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mols': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:455:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int32 ts_size = VARHDRSZ + strlen(str); ^~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /usr/include/postgresql/11/server/fmgr.h:243:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:477:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:33: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:484:21: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] PG_RETURN_INT32((int32)lst); ^ /usr/include/postgresql/11/server/postgres.h:464:36: note: in definition of macro 'Int32GetDatum' #define Int32GetDatum(X) ((Datum) (X)) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:484:5: note: in expansion of macro 'PG_RETURN_INT32' PG_RETURN_INT32((int32)lst); ^~~~~~~~~~~~~~~ In file included from /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:34: /usr/include/postgresql/11/server/fmgr.h:243:29: warning: initialization of 'CROMol' {aka 'void *'} from 'Datum' {aka 'long unsigned int'} makes pointer from integer without a cast [-Wint-conversion] #define PG_GETARG_DATUM(n) (fcinfo->arg[n]) ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:488:18: note: in expansion of macro 'PG_GETARG_DATUM' CROMol mol = PG_GETARG_DATUM(1); ^~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_smiles_transition': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c: In function 'fmcs_mol_transition': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_op.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o sfp_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/sfp_op.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rxn_op.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c:164:1: warning: multi-line comment [-Wcomment] // /* keep compiler quiet - no extra ; */ \ ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c: In function 'reaction_to_svg': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c:179:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] bool highlightByReactants = PG_GETARG_BOOL(1); ^~~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o rdkit_gist.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldistsign': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:240:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *as = (uint8 *)VARDATA(a); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'soergeldist': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: implicit declaration of function 'floor' [-Wimplicit-function-declaration] return (int) floor(10000*soergeldistsign(a, b)); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: warning: incompatible implicit declaration of built-in function 'floor' /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: note: include '' or provide a declaration of 'floor' /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:42:1: +#include /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:275:16: return (int) floor(10000*soergeldistsign(a, b)); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:262:10: warning: unused variable 'd' [-Wunused-variable] double d; ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'gmol_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:526:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:538:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:570:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'rdkit_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:658:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int siglen = SIGLEN(query); ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:673:5: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'gsfp_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:708:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int sum, overlapSum, overlapN; ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:714:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int nKey = (ISALLTRUE(key)) ? ^~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c: In function 'greaction_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:787:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:804:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:832:7: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] uint8 *k = (uint8 *)VARDATA(key); ^~~~~ At top level: /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:646:1: warning: 'rdkit_consistent' defined but not used [-Wunused-function] rdkit_consistent(GISTENTRY *entry, StrategyNumber strategy, bytea *key, bytea *query) ^~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c:261:1: warning: 'soergeldist' defined but not used [-Wunused-function] soergeldist(bytea *a, bytea *b) { ^~~~~~~~~~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_gist.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c: In function 'merge_key': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c:699:3: warning: ISO C90 forbids mixed declarations and code [-Wdeclaration-after-statement] int siglen = GBFP_INNER_SIGLEN(result); ^~~ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bfp_gin.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gin.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o low_gist.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c: In function 'gslfp_consistent': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' [-Wimplicit-function-declaration] fcinfo->flinfo->fn_extra = searchSfpCache( ^~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:28: warning: assignment to 'void *' from 'int' makes pointer from integer without a cast [-Wint-conversion] fcinfo->flinfo->fn_extra = searchSfpCache( ^ gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o guc.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/guc.c gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o cache.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c: In function 'createCache': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:312:17: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] methodsOrig = ctx->methods; ^ g++ -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-unused-function -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o adapter.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/adapter.cpp gcc -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -fPIC -c -o bitstring.o /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringUnion': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c:72:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c: In function 'bitstringIntersection': /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c:106:7: warning: unused variable 'i' [-Wunused-variable] int i; ^ g++ -Wall -Wmissing-prototypes -Wpointer-arith -Wdeclaration-after-statement -Wendif-labels -Wmissing-format-attribute -Wformat-security -fno-strict-aliasing -fwrapv -fexcess-precision=standard -Wno-format-truncation -Wno-stringop-truncation -g -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -fno-omit-frame-pointer -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -shared -o rdkit.so rdkit_io.o mol_op.o bfp_op.o sfp_op.o rxn_op.o rdkit_gist.o bfp_gist.o bfp_gin.o low_gist.o guc.o cache.o adapter.o bitstring.o -L/usr/lib/x86_64-linux-gnu -Wl,-z,relro -Wl,-z,now -L/usr/lib/llvm-7/lib -L/usr/lib/x86_64-linux-gnu/mit-krb5 -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/rdkit-201809.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -L/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//lib -lRDKitMolDraw2D -lRDKitMolTransforms -lRDKitMolHash -lRDKitFMCS -lRDKitChemReactions -lRDKitChemTransforms -lRDKitFileParsers -lRDKitSmilesParse -lRDKitFingerprints -lRDKitSubgraphs -lRDKitDescriptors -lRDKitPartialCharges -lRDKitSubstructMatch -lRDKitGraphMol -lRDKitEigenSolvers -lRDKitDataStructs -lRDKitDepictor -lRDKitRDGeometryLib -lRDKitRDGeneral -pthread sed -e's/@RDKIT_PG_BFP_GIST_FETCH@/FUNCTION 9 gbfp_fetch (internal),/;' \ -e's/@RDKIT_GIN_BFP_TRICONSISTENT@/FUNCTION 6 gin_bfp_triconsistent(internal, int2, bfp, int4, internal, internal, internal),/' \ -e's/@RDKIT_PARALLEL_SAFE@/PARALLEL SAFE/' \ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit.sql.in > rdkit--3.7.sql /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rdkit_io.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_io.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o mol_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:361:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:381:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:409:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:477:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:488:12: warning: incompatible integer to pointer conversion initializing 'CROMol' (aka 'void *') with an expression of type 'Datum' (aka 'unsigned long') [-Wint-conversion] CROMol mol = PG_GETARG_DATUM(1); ^ ~~~~~~~~~~~~~~~~~~ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/mol_op.c:496:1: warning: control may reach end of non-void function [-Wreturn-type] } ^ 6 warnings generated. /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o sfp_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/sfp_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rxn_op.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rxn_op.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o rdkit_gist.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit_gist.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_gist.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gist.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bfp_gin.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bfp_gin.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o low_gist.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:30: warning: implicit declaration of function 'searchSfpCache' is invalid in C99 [-Wimplicit-function-declaration] fcinfo->flinfo->fn_extra = searchSfpCache( ^ /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/low_gist.c:410:28: warning: incompatible integer to pointer conversion assigning to 'void *' from 'int' [-Wint-conversion] fcinfo->flinfo->fn_extra = searchSfpCache( ^ ~~~~~~~~~~~~~~~ 2 warnings generated. /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o guc.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/guc.c /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o cache.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/cache.c:312:17: warning: assigning to 'MemoryContextMethods *' (aka 'struct MemoryContextMethods *') from 'const MemoryContextMethods *' (aka 'const struct MemoryContextMethods *') discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] methodsOrig = ctx->methods; ^ ~~~~~~~~~~~~ 1 warning generated. /usr/bin/clang-7 -xc++ -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -emit-llvm -c -o adapter.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/adapter.cpp opt-7 -module-summary -f adapter.bc -o adapter.bc /usr/bin/clang-7 -Wno-ignored-attributes -fno-strict-aliasing -fwrapv -O2 -I/usr/local/include -I/build/rdkit-201809.1+dfsg/Code -DRDKITVER='"007300"' -I. -I/build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit -I/usr/include/postgresql/11/server -I/usr/include/postgresql/internal -Wdate-time -D_FORTIFY_SOURCE=2 -D_GNU_SOURCE -I/usr/include/libxml2 -I/usr/include/mit-krb5 -flto=thin -emit-llvm -c -o bitstring.bc /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/bitstring.c make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/build-11' (cd /build/rdkit-201809.1+dfsg/Code; doxygen doxygen/doxygen.config) warning: Tag `SYMBOL_CACHE_SIZE' at line 337 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 557 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 971 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `USE_INLINE_TREES' at line 1162 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1425 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1431 of file `doxygen/doxygen.config' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/tutorial Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/libs Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/QTDemo Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary Searching for files in directory /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Catalogs Searching for files in directory /build/rdkit-201809.1+dfsg/Code/DataStructs Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Query Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ML Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ML/Cluster Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ML/Data Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory Searching for files in directory /build/rdkit-201809.1+dfsg/Code/DataManip Searching for files in directory /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc Searching for files in directory /build/rdkit-201809.1+dfsg/Code/SimDivPickers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/RDGeneral Searching for files in directory /build/rdkit-201809.1+dfsg/Code/RDGeneral/hash Searching for files in directory /build/rdkit-201809.1+dfsg/Code/RDGeneral/hash/detail Searching for files in directory /build/rdkit-201809.1+dfsg/Code/RDBoost Searching for files in directory /build/rdkit-201809.1+dfsg/Code/DistGeom Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ForceField Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ForceField/UFF Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Geometry Searching for files in directory /build/rdkit-201809.1+dfsg/Code/Features Searching for files in directory /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures Reading and parsing tag files Parsing files Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Atom.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/atomic_data.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/AtomIterators.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Bond.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/BondIterators.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/CartesianProduct.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/Enumerate.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSample.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/PreprocessRxn.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionFingerprints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionParser.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionParser.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionPickler.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/MolFragmenter.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Chirality.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Conformer.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/DepictUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/EmbeddedFrag.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/AUTOCORR3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/ConnectivityDescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Crippen.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Data3Ddescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/EEM.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/EEM.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/GETAWAY.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/GETAWAY.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolData3Ddescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolDescriptors3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MolSurf.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MORSE.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MORSE.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/MQN.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PBF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PBF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PMI.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/PMI.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Property.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RDF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RDF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RegisterDescriptor.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/RegisterDescriptor.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/WHIM.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/WHIM.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/details.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/details.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Embedder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParserUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParserUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolFileStereochem.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolWriters.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolWriters.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/ProximityBonds.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceWriters.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Filters.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MACCS.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Composition2N.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Composition2N.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DebugTrace.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DebugTrace.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/DuplicatedSeedCache.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/FMCS.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Graph.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Graph.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MatchTable.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MatchTable.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/MaximumCommonSubgraph.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/RingMatchTableSet.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Seed.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SeedSet.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SeedSet.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructMatchCustom.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructureCache.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/SubstructureCache.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Target.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Target.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/TargetMatch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/TargetMatch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF/MMFF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/Builder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF/UFF.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragCatParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/FragFPGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/GraphMol.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/AlignMolecules.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/O3AAlignMolecules.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolBundle.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolBundle.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/MolCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/FeatureParser.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DCairo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DDetails.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DQt.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DSVG.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2DUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2Dwx.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MultiMolDraw2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MultiMolDraw2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/MolHash.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/details.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/details.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/MolInterchange.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/MolInterchange.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolPickler.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Charge.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Fragment.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Metal.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/MolStandardize.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Normalize.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Tautomer.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Validate.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/MolTransforms.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/MonomerInfo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/MonomerInfo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/new_canon.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerCharges.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/GasteigerParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/PeriodicTable.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryAtom.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryBond.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitBase.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitQueries.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RDKitQueries.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/RGroupDecomp.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RingInfo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Rings.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Rings.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ROMol.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/RWMol.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SanitException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SanitException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeEncoder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/ShapeUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNAttribs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParse.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/SLNParseOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/primes.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/primes.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmartsWrite.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParse.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesParseOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StereoGroup.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Pattern.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/ReCharge.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Stereo.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StripSmallFragments.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructChecker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/StructCheckerOptions.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Tautomer.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Utilites.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/Subgraphs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs/SubgraphUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructMatch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct/SubstructUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/SubstructLibrary.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Snapshot.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Snapshot.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.h... Parsing file /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory/Trajectory.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Catalogs/Catalog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogEntry.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Catalogs/CatalogParams.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/base64.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVects.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVects.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVectUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/BitVectUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/DatastructsException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/DatastructsException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteDistMat.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/DiscreteValueVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/ExplicitBitVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/FPBReader.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/MultiFPBReader.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseBitVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseIntVect.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataStructs/SparseIntVect.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/AndQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/AndQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/EqualityQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/EqualityQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/GreaterEqualQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/GreaterEqualQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/GreaterQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/GreaterQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/LessEqualQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/LessEqualQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/LessQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/LessQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/OrQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/OrQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/Query.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/Query.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/QueryObjects.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/QueryObjects.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/RangeQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/RangeQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/SetQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/SetQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Query/XOrQuery.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Query/XOrQuery.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/CorrMatGenerator.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoBitRanker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/InfoGainFuncs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricFuncs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/MetricMatrixCalc.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/SimDivPickers/DistPicker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h... Parsing file /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/BadFileException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/BadFileException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostEndInclude.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostEndInclude.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostStartInclude.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/BoostStartInclude.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Dict.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Exceptions.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Exceptions.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/export.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/export.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/FileParseException.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/FileParseException.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/hanoiSort.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/hanoiSort.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Invariant.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/LocaleSwitcher.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/Ranking.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/Ranking.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDAny.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDAny.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDConfig.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDConfig.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDLog.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDProps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDProps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDThreads.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDThreads.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-doublemagic.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-doublemagic.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-taggedunion.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue-taggedunion.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/RDValue.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/StreamOps.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/StreamOps.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/types.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/utils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDGeneral/versions.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/boost_numpy.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/boost_numpy.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/import_array.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/import_array.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/iterator_next.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/iterator_next.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/pyint_api.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/pyint_api.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/PySequenceHolder.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/python.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/python.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h... Parsing file /build/rdkit-201809.1+dfsg/Code/RDBoost/python_streambuf.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/BoundsMatrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/BoundsMatrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralSet.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralSet.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/ChiralViolationContrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/DistGeomUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/DistViolationContrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/FourthDimContrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/FourthDimContrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.h... Parsing file /build/rdkit-201809.1+dfsg/Code/DistGeom/TriangleSmooth.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/Contrib.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/Contrib.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/DistanceConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/OopBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleBend.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/BondStretch.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/DistanceConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Nonbonded.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Forc/build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h:15: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h:13: warning: the name `Contribs.h' supplied as the second argument in the \file statement matches the following input files: /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Contribs.h /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Contribs.h Please use a more specific name by including a (larger) part of the path! eField/UFF/Nonbonded.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Params.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionAngle.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/TorsionConstraint.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/AlignPoints.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers/PowerEigenSolver.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Matrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Matrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer/BFGSOpt.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/SquareMatrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/SquareMatrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/SymmMatrix.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/SymmMatrix.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Numerics/Vector.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Numerics/Vector.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Grid3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Grid3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/GridUtils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/point.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/point.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Transform.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Transform.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Transform2D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Transform3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/UniformGrid3D.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Geometry/Utils.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Geometry/Utils.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/Features/Feature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/Features/Feature.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/ChemicalFeature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/ChemicalFeature.h... Preprocessing /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h... Parsing file /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/FreeChemicalFeature.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file AcidBaseCatalogEntry.h... Generating code for file AcidBaseCatalogParams.h... Generating code for file AcidBaseCatalogUtils.h... Generating code for file AlignMolecules.h... Generating code for file AlignPoints.h... Generating code for file AndQuery.h... Generating code for file AngleBend.h... Generating code for file AngleBend.h... Generating code for file AngleConstraint.h... Generating code for file AngleConstraint.h... Generating code for file Atom.h... Generating code for file atomic_data.h... Generating code for file AtomIterators.h... Generating code for file AtomPairGenerator.h... Generating code for file AtomPairs.h... Generating code for file AtomTyper.h... Generating code for file AtomTyper.h... Generating code for file AUTOCORR2D.h... Generating code for file AUTOCORR3D.h... Generating code for file BadFileException.h... Generating code for file base64.h... Generating code for file BFGSOpt.h... Generating code for file BitOps.h... Generating code for file BitVect.h... Generating code for file BitVects.h... Generating code for file BitVectUtils.h... Generating code for file Bond.h... Generating code for file BondIterators.h... Generating code for file BondStretch.h... Generating code for file BondStretch.h... Generating code for file boost_numpy.h... Generating code for file BoostEndInclude.h... Generating code for file BoostStartInclude.h... Generating code for file BoundsMatrix.h... Generating code for file BoundsMatrixBuilder.h... Generating code for file Builder.h... Generating code for file Builder.h... Generating code for file Canon.h... Generating code for file CartesianProduct.h... Generating code for file Catalog.h... Generating code for file CatalogEntry.h... Generating code for file CatalogParams.h... Generating code for file Charge.h... Generating code for file ChemicalFeature.h... Generating code for file ChemTransforms.h... Generating code for file Chirality.h... Generating code for file ChiralSet.h... Generating code for file ChiralViolationContrib.h... Generating code for file Composition2N.h... Generating code for file Conformer.h... Generating code for file ConnectivityDescriptors.h... Generating code for file Contrib.h... Generating code for file Contribs.h... Generating code for file Contribs.h... Generating code for file CorrMatGenerator.h... Generating code for file Crippen.h... Generating code for file Data3Ddescriptors.h... Generating code for file DatastructsException.h... Generating code for file DebugTrace.h... Generating code for file DepictUtils.h... Generating code for file details.h... Generating code for file details.h... Generating code for file Dict.h... Generating code for file DiscreteDistMat.h... Generating code for file DiscreteValueVect.h... Generating code for file DistanceConstraint.h... Generating code for file DistanceConstraint.h... Generating code for file DistGeomUtils.h... Generating code for file DistPicker.h... Generating code for file DistViolationContrib.h... Generating code for file DuplicatedSeedCache.h... Generating code for file EEM.h... Generating code for file EmbeddedFrag.h... Generating code for file Embedder.h... Generating code for file Enumerate.h... Generating code for file EnumerateBase.h... Generating code for file EnumerateTypes.h... Generating code for file EnumerationPickler.h... Generating code for file EnumerationStrategyBase.h... Generating code for file EqualityQuery.h... Generating code for file EvenSamplePairs.h... Generating code for file Exceptions.h... Generating code for file ExplicitBitVect.h... Generating code for file export.h... Generating code for file Feature.h... Generating code for file FeatureParser.h... Generating code for file FileParseException.h... Generating code for file FileParsers.h... Generating code for file FileParserUtils.h... Generating code for file FilterCatalog.h... Generating code for file FilterCatalogEntry.h... Generating code for file FilterMatcherBase.h... Generating code for file FilterMatchers.h... Generating code for file Filters.h... Generating code for file FingerprintGenerator.h... Generating code for file Fingerprints.h... Generating code for file FingerprintUtil.h... Generating code for file FMCS.h... Generating code for file ForceField.h... Generating code for file FourthDimContrib.h... Generating code for file FPBReader.h... Generating code for file FragCatalogEntry.h... Generating code for file FragCatalogUtils.h... Generating code for file FragCatGenerator.h... Generating code for file FragCatParams.h... Generating code for file FragFPGenerator.h... Generating code for file Fragment.h... Generating code for file FragmentCatalogEntry.h... Generating code for file FragmentCatalogParams.h... Generating code for file FragmentCatalogUtils.h... Generating code for file FreeChemicalFeature.h... Generating code for file FunctionalGroupHierarchy.h... Generating code for file GasteigerCharges.h... Generating code for file GasteigerParams.h... Generating code for file GETAWAY.h... Generating code for file Graph.h... Generating code for file GraphMol.h... Generating code for file GreaterEqualQuery.h... Generating code for file GreaterQuery.h... Generating code for file Grid3D.h... Generating code for file GridUtils.h... Generating code for file hanoiSort.h... Generating code for file HierarchicalClusterPicker.h... Generating code for file import_array.h... Generating code for file InfoBitRanker.h... Generating code for file InfoGainFuncs.h... Generating code for file Invariant.h... Generating code for file Inversion.h... Generating code for file iterator_next.h... Generating code for file LessEqualQuery.h... Generating code for file LessQuery.h... Generating code for file Lipinski.h... Generating code for file LocaleSwitcher.h... Generating code for file MACCS.h... Generating code for file MatchTable.h... Generating code for file Matrix.h... Generating code for file MaximumCommonSubgraph.h... Generating code for file MaxMinPicker.h... Generating code for file Metal.h... Generating code for file MetricFuncs.h... Generating code for file MetricMatrixCalc.h... Generating code for file MMFF.h... Generating code for file MMPA.h... Generating code for file MolBundle.h... Generating code for file MolCatalog.h... Generating code for file MolCatalogEntry.h... Generating code for file MolCatalogParams.h... Generating code for file MolChemicalFeature.h... Generating code for file MolChemicalFeatureDef.h... Generating code for file MolChemicalFeatureFactory.h... Generating code for file MolData3Ddescriptors.h... Generating code for file MolDescriptors.h... Generating code for file MolDescriptors3D.h... Generating code for file MolDraw2D.h... Generating code for file MolDraw2DCairo.h... Generating code for file MolDraw2DDetails.h... Generating code for file MolDraw2DQt.h... Generating code for file MolDraw2DSVG.h... Generating code for file MolDraw2DUtils.h... Generating code for file MolDraw2Dwx.h... Generating code for file MolFileStereochem.h... Generating code for file MolFragmenter.h... Generating code for file MolHash.h... Generating code for file MolInterchange.h... Generating code for file MolOps.h... Generating code for file MolPickler.h... Generating code for file MolStandardize.h... Generating code for file MolSupplier.h... Generating code for file MolSurf.h... Generating code for file MolTransforms.h... Generating code for file MolWriters.h... Generating code for file MonomerInfo.h... Generating code for file MorganFingerprints.h... Generating code for file MorganGenerator.h... Generating code for file MORSE.h... Generating code for file MQN.h... Generating code for file MultiFPBReader.h... Generating code for file MultiMolDraw2D.h... Generating code for file new_canon.h... Generating code for file Nonbonded.h... Generating code for file Nonbonded.h... Generating code for file Normalize.h... Generating code for file O3AAlignMolecules.h... Generating code for file OopBend.h... Generating code for file OrQuery.h... Generating code for file Params.h... Generating code for file Params.h... Generating code for file Pattern.h... Generating code for file PBF.h... Generating code for file PeriodicTable.h... Generating code for file PMI.h... Generating code for file point.h... Generating code for file PositionConstraint.h... Generating code for file PositionConstraint.h... Generating code for file PowerEigenSolver.h... Generating code for file PreprocessRxn.h... Generating code for file primes.h... Generating code for file Property.h... Generating code for file ProximityBonds.h... Generating code for file pyint_api.h... Generating code for file PySequenceHolder.h... Generating code for file python.h... Generating code for file python_streambuf.h... Generating code for file Query.h... Generating code for file QueryAtom.h... Generating code for file QueryBond.h... Generating code for file QueryObjects.h... Generating code for file QueryOps.h... Generating code for file RandomSample.h... Generating code for file RandomSampleAllBBs.h... Generating code for file RangeQuery.h... Generating code for file Ranking.h... Generating code for file RDAny.h... Generating code for file RDConfig.h... Generating code for file RDDepictor.h... Generating code for file RDF.h... Generating code for file RDKitBase.h... Generating code for file RDKitFPGenerator.h... Generating code for file RDKitQueries.h... Generating code for file RDLog.h... Generating code for file RDProps.h... Generating code for file RDThreads.h... Generating code for file RDValue-doublemagic.h... Generating code for file RDValue-taggedunion.h... Generating code for file RDValue.h... Generating code for file Reaction.h... Generating code for file ReactionFingerprints.h... Generating code for file ReactionParser.h... Generating code for file ReactionPickler.h... Generating code for file ReactionRunner.h... Generating code for file ReactionUtils.h... Generating code for file ReCharge.h... Generating code for file ReducedGraphs.h... Generating code for file RegisterDescriptor.h... Generating code for file Resonance.h... Generating code for file RGroupDecomp.h... Generating code for file RingInfo.h... Generating code for file RingMatchTableSet.h... Generating code for file Rings.h... Generating code for file ROMol.h... Generating code for file RWMol.h... Generating code for file SanitException.h... Generating code for file SanitizeRxn.h... Generating code for file Seed.h... Generating code for file SeedSet.h... Generating code for file SequenceParsers.h... Generating code for file SequenceWriters.h... Generating code for file SetQuery.h... Generating code for file ShapeEncoder.h... Generating code for file ShapeUtils.h... Generating code for file SLNAttribs.h... Generating code for file SLNParse.h... Generating code for file SLNParseOps.h... Generating code for file SmartsWrite.h... Generating code for file SmilesParse.h... Generating code for file SmilesParseOps.h... Generating code for file SmilesWrite.h... Generating code for file Snapshot.h... Generating code for file SparseBitVect.h... Generating code for file SparseIntVect.h... Generating code for file SquareMatrix.h... Generating code for file Stereo.h... Generating code for file StereoGroup.h... Generating code for file StreamOps.h... Generating code for file StretchBend.h... Generating code for file StripSmallFragments.h... Generating code/build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h:174: warning: found at different nesting level (7) than expected (4) /build/rdkit-201809.1+dfsg/Code/DataStructs/BitOps.h:175: warning: end of comment block while expecting command for file StructChecker.h... Generating code for file StructCheckerOptions.h... Generating code for file Subgraphs.h... Generating code for file SubgraphUtils.h... Generating code for file SubstructLibrary.h... Generating code for file SubstructMatch.h... Generating code for file SubstructMatchCustom.h... Generating code for file SubstructureCache.h... Generating code for file SubstructUtils.h... Generating code for file SymmMatrix.h... Generating code for file Target.h... Generating code for file TargetMatch.h... Generating code for file Tautomer.h... Generating code for file Tautomer.h... Generating code for file TautomerCatalogEntry.h... Generating code for file TautomerCatalogParams.h... Generating code for file TautomerCatalogUtils.h... Generating code for file TopologicalTorsionGenerator.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngle.h... Generating code for file TorsionAngleM6.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionConstraint.h... Generating code for file TorsionPreferences.h... Generating code for file Trajectory.h... Generating code for file Transform.h... Generating code for file Transform2D.h... Generating code for file Transform3D.h... Generating code for file TransformCatalogEntry.h... Generating code for file TransformCatalogParams.h... Generating code for file TransformCatalogUtils.h... Generating code for file TriangleSmooth.h... Generating code for file types.h... Generating code for file UFF.h... Generating code for file UniformGrid3D.h... Generating code for file USRDescriptor.h... Generating code for file Utilites.h... Generating code for file Utils.h... Generating code for file utils.h... Generating code for file Validate.h... Generating code for file Vector.h... Generating code for file versions.h... Generating code for file WHIM.h... Generating code for file XOrQuery.h... Generating file documentation... Generating docs for file AcidBaseCatalogEntry.h... Generating docs for file AcidBaseCatalogParams.h... Generating docs for file AcidBaseCatalogUtils.h... Generating docs for file AlignMolecules.h... Generating docs for file AlignPoints.h... Generating docs for file AndQuery.h... Generating docs for file AngleBend.h... Generating docs for file AngleBend.h... Generating docs for file AngleConstraint.h... Generating docs for file AngleConstraint.h... Generating docs for file Atom.h... Generating docs for file atomic_data.h... Generating docs for file AtomIterators.h... Generating docs for file AtomPairGenerator.h... Generating docs for file AtomPairs.h... Generating docs for file AtomTyper.h... Generating docs for file AtomTyper.h... Generating docs for file AUTOCORR2D.h... Generating docs for file AUTOCORR3D.h... Generating docs for file BadFileException.h... Generating docs for file base64.h... Generating docs for file BFGSOpt.h... Generating docs for file BitOps.h... Generating docs for file BitVect.h... Generating docs for file BitVects.h... Generating docs for file BitVectUtils.h... Generating docs for file Bond.h... Generating docs for file BondIterators.h... Generating docs for file BondStretch.h... Generating docs for file BondStretch.h... Generating docs for file boost_numpy.h... Generating docs for file BoostEndInclude.h... Generating docs for file BoostStartInclude.h... Generating docs for file BoundsMatrix.h... Generating docs for file BoundsMatrixBuilder.h... Generating docs for file Builder.h... Generating docs for file Builder.h... Generating docs for file Canon.h... Generating docs for file CartesianProduct.h... Generating docs for file Catalog.h... Generating docs for file CatalogEntry.h... Generating docs for file CatalogParams.h... Generating docs for file Charge.h... Generating docs for file ChemicalFeature.h... Generating docs for file ChemTransforms.h... Generating docs for file Chirality.h... Generating docs for file ChiralSet.h... Generating docs for file ChiralViolationContrib.h... Generating docs for file Composition2N.h... Generating docs for file Conformer.h... Generating docs for file ConnectivityDescriptors.h... Generating docs for file Contrib.h... Generating docs for file Contribs.h... Generating docs for file Contribs.h... Generating docs for file CorrMatGenerator.h... Generating docs for file Crippen.h... Generating docs for file Data3Ddescriptors.h... Generating docs for file DatastructsException.h... Generating docs for file DebugTrace.h... Generating docs for file DepictUtils.h... Generating docs for file details.h... Generating docs for file details.h... Generating docs for file Dict.h... Generating docs for file DiscreteDistMat.h... Generating docs for file DiscreteValueVect.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistanceConstraint.h... Generating docs for file DistGeomUtils.h... Generating docs for file DistPicker.h... Generating docs for file DistViolationContrib.h... Generating docs for file DuplicatedSeedCache.h... Generating docs for file EEM.h... Generating docs for file EmbeddedFrag.h... Generating docs for file Embedder.h... Generating docs for file Enumerate.h... Generating docs for file EnumerateBase.h... Generating docs for file EnumerateTypes.h... Generating docs for file EnumerationPickler.h... Generating docs for file EnumerationStrategyBase.h... Generating docs for file EqualityQuery.h... Generating docs for file EvenSamplePairs.h... Generating docs for file Exceptions.h... Generating docs for file ExplicitBitVect.h... Generating docs for file export.h... Generating docs for file Feature.h... Generating docs for file FeatureParser.h... Generating docs for file FileParseException.h... Generating docs for file FileParsers.h... Generating docs for file FileParserUtils.h... Generating docs for file FilterCatalog.h... Generating docs for file FilterCatalogEntry.h... Generating docs for file FilterMatcherBase.h... Generating docs for file FilterMatchers.h... Generating docs for file Filters.h... Generating docs for file FingerprintGenerator.h... Generating docs for file Fingerprints.h... Generating docs for file FingerprintUtil.h... Generating docs for file FMCS.h... Generating docs for file ForceField.h... Generating docs for file FourthDimContrib.h... Generating docs for file FPBReader.h... Generating docs for file FragCatalogEntry.h... Generating docs for file FragCatalogUtils.h... Generating docs for file FragCatGenerator.h... Generating docs for file FragCatParams.h... Generating docs for file FragFPGenerator.h... Generating docs for file Fragment.h... Generating docs for file FragmentCatalogEntry.h... Generating docs for file FragmentCatalogParams.h... Generating docs for file FragmentCatalogUtils.h... Generating docs for file FreeChemicalFeature.h... Generating docs for file FunctionalGroupHierarchy.h... Generating docs for file GasteigerCharges.h... Generating docs for file GasteigerParams.h... Generating docs for file GETAWAY.h... Generating docs for file Graph.h... Generating docs for file GraphMol.h... Generating docs for file GreaterEqualQuery.h... Generating docs for file GreaterQuery.h... Generating docs for file Grid3D.h... Generating docs for file GridUtils.h... Generating docs for file hanoiSort.h... Generating docs for file HierarchicalClusterPicker.h... Generating docs for file import_array.h... Generating docs for file InfoBitRanker.h... Generating docs for file InfoGainFuncs.h... Generating docs for file Invariant.h... Generating docs for file Inversion.h... Generating docs for file iterator_next.h... Generating docs for file LessEqualQuery.h... Generating docs for file LessQuery.h... Generating docs for file Lipinski.h... Generating docs for file LocaleSwitcher.h... Generating docs for file MACCS.h... Generating docs for file MatchTable.h... Generating docs for file Matrix.h... Generating docs for file MaximumCommonSubgraph.h... Generating docs for file MaxMinPicker.h... Generating docs for file Metal.h... Generating docs for file MetricFuncs.h... Generating docs for file MetricMatrixCalc.h... Generating docs for file MMFF.h... Generating docs for file MMPA.h... Generating docs for file MolBundle.h... Generating docs for file/build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' MolCatalog.h... Generating docs for file MolCatalogEntry.h... Generating docs for file MolCatalogParams.h... Generating docs for file MolChemicalFeature.h... Generating docs for file MolChemicalFeatureDef.h... Generating docs for file MolChemicalFeatureFactory.h... Generating docs for file MolData3Ddescriptors.h... Generating docs for file MolDescriptors.h... Generating docs for file MolDescriptors3D.h... Generating docs for file MolDraw2D.h... Generating docs for file MolDraw2DCairo.h... Generating docs for file MolDraw2DDetails.h... Generating docs for file MolDraw2DQt.h... Generating docs for file MolDraw2DSVG.h... Generating docs for file MolDraw2DUtils.h... Generating docs for file MolDraw2Dwx.h... Generating docs for file MolFileStereochem.h... Generating docs for file MolFragmenter.h... Generating docs for file MolHash.h... Generating docs for file MolInterchange.h... Generating docs for file MolOps.h... Generating docs for file MolPickler.h... Generating docs for file MolStandardize.h... Generating docs for file MolSupplier.h... Generating docs for file MolSurf.h... Generating docs for file MolTransforms.h... Generating docs for file MolWriters.h... Generating docs for file MonomerInfo.h... Generating docs for file MorganFingerprints.h... Generating docs for file MorganGenerator.h... Generating docs for file MORSE.h... Generating docs for file MQN.h... Generating docs for file MultiFPBReader.h... Generating docs for file MultiMolDraw2D.h... Generating docs for file new_canon.h... Generating docs for file Nonbonded.h... Generating docs for file Nonbonded.h... Generating docs for file Normalize.h... Generating docs for file O3AAlignMolecules.h... Generating docs for file OopBend.h... Generating docs for file OrQuery.h... Generating docs for file Params.h... Generating docs for file Params.h... Generating docs for file Pattern.h... Generating docs for file PBF.h... Generating docs for file PeriodicTable.h... Generating docs for file PMI.h... Generating docs for file point.h... Generating docs for file PositionConstraint.h... Generating docs for file PositionConstraint.h... Generating docs for file PowerEigenSolver.h... Generating docs for file PreprocessRxn.h... Generating docs for file primes.h... Generating docs for file Property.h... Generating docs for file ProximityBonds.h... Generating docs for file pyint_api.h... Generating docs for file PySequenceHolder.h... Generating docs for file python.h... Generating docs for file python_streambuf.h... Generating docs for file Query.h... Generating docs for file QueryAtom.h... Generating docs for file QueryBond.h... Generating docs for file QueryObjects.h... Generating docs for file QueryOps.h... Generating docs for file RandomSample.h... Generating docs for file RandomSampleAllBBs.h... Generating docs for file RangeQuery.h... Generating docs for file Ranking.h... Generating docs for file RDAny.h... Generating docs for file RDConfig.h... Generating docs for file RDDepictor.h... Generating docs for file RDF.h... Generating docs for file RDKitBase.h... Generating docs for file RDKitFPGenerator.h... Generating docs for file RDKitQueries.h... Generating docs for file RDLog.h... Generating docs for file RDProps.h... Generating docs for file RDThreads.h... Generating docs for file RDValue-doublemagic.h... Generating docs for file RDValue-taggedunion.h... Generating docs for file RDValue.h... Generating docs for file Reaction.h... Generating docs for file ReactionFingerprints.h... Generating docs for file ReactionParser.h... Generating docs for file ReactionPickler.h... Generating docs for file ReactionRunner.h... Generating docs for file ReactionUtils.h... Generating docs for file ReCharge.h... Generating docs for file ReducedGraphs.h... Generating docs for file RegisterDescriptor.h... Generating docs for file Resonance.h... Generating docs for file RGroupDecomp.h... Generating docs for file RingInfo.h... Generating docs for file RingMatchTableSet.h... Generating docs for file Rings.h... Generating docs for file ROMol.h... Generating docs for file RWMol.h... Generating docs for file SanitException.h... Generating docs for file SanitizeRxn.h... Generating docs for file Seed.h... Generating docs for file SeedSet.h... Generating docs for file SequenceParsers.h... Generating docs for file SequenceWriters.h... Generating docs for file SetQuery.h... Generating docs for file ShapeEncoder.h... Generating docs for file ShapeUtils.h... Generating docs for file SLNAttribs.h... Generating docs for file SLNParse.h... Generating docs for file SLNParseOps.h... Generating docs for file SmartsWrite.h... Generating docs for file SmilesParse.h... Generating docs for file SmilesParseOps.h... Generating docs for file SmilesWrite.h... Generating docs for file Snapshot.h... Generating docs for file SparseBitVect.h... Generating docs for file SparseIntVect.h... Generating docs for file SquareMatrix.h... Generating docs for file Stereo.h... Generating docs for file StereoGroup.h... Generating docs for file StreamOps.h... Generating docs for file StretchBend.h... Generating docs for file StripSmallFragments.h... Generating docs for file StructChecker.h... Generating docs for file StructCheckerOptions.h... Generating docs for file Subgraphs.h... Generating docs for file SubgraphUtils.h... Generating docs for file SubstructLibrary.h... Generating docs for file SubstructMatch.h... Generating docs for file SubstructMatchCustom.h... Generating docs for file SubstructureCache.h... Generating docs for file SubstructUtils.h... Generating docs for file SymmMatrix.h... Generating docs for file Target.h... Generating docs for file TargetMatch.h... Generating docs for file Tautomer.h... Generating docs for file Tautomer.h... Generating docs for file TautomerCatalogEntry.h... Generating docs for file TautomerCatalogParams.h... Generating docs for file TautomerCatalogUtils.h... Generating docs for file TopologicalTorsionGenerator.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngle.h... Generating docs for file TorsionAngleM6.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionConstraint.h... Generating docs for file TorsionPreferences.h... Generating docs for file Trajectory.h... Generating docs for file Transform.h... Generating docs for file Transform2D.h... Generating docs for file Transform3D.h... Generating docs for file TransformCatalogEntry.h... Generating docs for file TransformCatalogParams.h... Generating docs for file TransformCatalogUtils.h... Generating docs for file TriangleSmooth.h... Generating docs for file types.h... Generating docs for file UFF.h... Generating docs for file UniformGrid3D.h... Generating docs for file USRDescriptor.h... Generating docs for file Utilites.h... Generating docs for file Utils.h... Generating docs for file utils.h... Generating docs for file Validate.h... Generating docs for file Vector.h... Generating docs for file versions.h... Generating docs for file WHIM.h... Generating docs for file XOrQuery.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound BitVect... Generating docs for compound Data3Ddescriptors... Generating docs for compound DatastructsException... Generating docs for compound ExplicitBitVect... Generating docs for compound IndexErrorException... Generating docs for compound KeyErrorException... Generating docs for compound MolData3Ddescriptors... Generating docs for compound PySequenceHolder... Generating docs for compound SparseBitVect... Generating docs for compound ValueErrorException... Generating namespace index... Generating docs for namespace BFGSOpt Generating docs for namespace boost Generating docs for namespace boost::logging Generating docs for compound boost::logging::rdLogger... Generating docs for namespace boost_adaptbx Generating docs for namespace boost_adaptbx::python Generating docs for compound boost_adaptbx::python::ostream... Generating docs for compound boost_adaptbx::python::streambuf... Generating docs for nested compound boost_adaptbx::python::streambuf::istream... Generating docs for nested compo/build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:133: warning: The following parameters of ForceFields::ForceField::minimize(unsigned int snapshotFreq, RDKit::SnapshotVect *snapshotVect, unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) are not documented: parameter 'snapshotFreq' parameter 'snapshotVect' /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:139: warning: argument 'snapshotFreq' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /build/rdkit-201809.1+dfsg/Code/ForceField/ForceField.h:139: warning: argument 'snapshotVect' of command @param is not found in the argument list of ForceFields::ForceField::minimize(unsigned int maxIts=200, double forceTol=1e-4, double energyTol=1e-6) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h:31: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleBend.h:40: warning: The following parameters of ForceFields::MMFF::AngleBendContrib::AngleBendContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, const MMFFAngle *mmffAngleParams, const MMFFProp *mmffPropParamsCentralAtom) are not documented: parameter 'mmffAngleParams' parameter 'mmffPropParamsCentralAtom' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:27: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:27: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/AngleConstraint.h:36: warning: The following parameters of ForceFields::MMFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'bondType' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'end1Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:28: warning: argument 'end2Params' of command @param is not found in the argument list of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/BondStretch.h:36: warning: The following parameters of ForceFields::MMFF::BondStretchContrib::BondStretchContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const MMFFBond *mmffBondParams) are not documented: parameter 'mmffBondParams' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h:59: warning: The following parameters of ForceFields::MMFF::EleContrib::EleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, double chargeTerm, boost::uint8_t dielModel, bool is1_4) are not documented: parameter 'chargeTerm' parameter 'dielModel' parameter 'is1_4' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:161: warning: argument 'mmffArom' of command @param is not found in the argument list of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:177: warning: The following parameters of ForceFields::MMFF::MMFFAromCollection::getMMFFArom(const boost::uint8_t *aromatic_types=NULL) are not documented: parameter 'aromatic_types' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:1086: warning: The following parameters of ForceFields::MMFF::MMFFOopCollection::getMMFFOop(const bool isMMFFs=false, const std::string &mmffOop="") are not documented: parameter 'isMMFFs' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Params.h:1215: warning: The following parameters of ForceFields::MMFF::MMFFTorCollection::getMMFFTor(const bool isMMFFs, const std::string &mmffTor="") are not documented: parameter 'isMMFFs' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/PositionConstraint.h:28: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::MMFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h:32: warning: argument 'angleType' of command @param is not found in the argument list of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/StretchBend.h:41: warning: The following parameters of ForceFields::MMFF::StretchBendContrib::StretchBendContrib(ForceField *owner, const unsigned int idx1, const unsigned int idx2, const unsigned int idx3, const MMFFStbn *mmffStbnParams, const MMFFAngle *mmffAngleParams, const MMFFBond *mmffBondParams1, const MMFFBond *mmffBondParams2) are not documented: parameter 'mmffStbnParams' parameter 'mmffAngleParams' parameter 'mmffBondParams1' parameter 'mmffBondParams2' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h:34: warning: argument 'torsionType' of command @param is not found in the argument list of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/TorsionAngle.h:45: warning: The following parameters of ForceFields::MMFF::TorsionAngleContrib::TorsionAngleContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, const MMFFTor *mmffTorParams) are not documented: parameter 'mmffTorParams' /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF/Nonbonded.h:35: warning: The following parameters of ForceFields::MMFF::VdWContrib::VdWContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, const MMFFVdWRijstarEps *mmffVdWConstants) are not documented: parameter 'mmffVdWConstants' /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:27: warning: argument 'minAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:27: warning: argument 'maxAngle' of command @param is not found in the argument list of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/AngleConstraint.h:36: warning: The following parameters of ForceFields::UFF::AngleConstraintContrib::AngleConstraintContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, double minAngleDeg, double maxAngleDeg, double forceConst) are not documented: parameter 'minAngleDeg' parameter 'maxAngleDeg' und boost_adaptbx::python::streambuf::ostream... Generating docs for compound boost_adaptbx::python::streambuf_capsule... Generating docs for namespace ChemicalFeatures Generating docs for compound ChemicalFeatures::ChemicalFeature... Generating docs for compound ChemicalFeatures::FreeChemicalFeature... Generating docs for namespace DistGeom Generating docs for compound DistGeom::BoundsMatrix... Generating docs for compound DistGeom::ChiralSet... Generating docs for compound DistGeom::ChiralViolationContrib... Generating docs for compound DistGeom::DistViolationContrib... Generating docs for compound DistGeom::FourthDimContrib... Generating docs for namespace ForceFields Generating docs for compound ForceFields::ForceField... Generating docs for compound ForceFields::ForceFieldContrib... Generating docs for namespace ForceFields::CrystalFF Generating docs for compound ForceFields::CrystalFF::TorsionAngleContribM6... Generating docs for namespace ForceFields::MMFF Generating docs for compound ForceFields::MMFF::AngleBendContrib... Generating docs for compound ForceFields::MMFF::AngleConstraintContrib... Generating docs for compound ForceFields::MMFF::BondStretchContrib... Generating docs for compound ForceFields::MMFF::DistanceConstraintContrib... Generating docs for compound ForceFields::MMFF::EleContrib... Generating docs for compound ForceFields::MMFF::MMFFAngle... Generating docs for compound ForceFields::MMFF::MMFFAngleCollection... Generating docs for compound ForceFields::MMFF::MMFFAromCollection... Generating docs for compound ForceFields::MMFF::MMFFBndkCollection... Generating docs for compound ForceFields::MMFF::MMFFBond... Generating docs for compound ForceFields::MMFF::MMFFBondCollection... Generating docs for compound ForceFields::MMFF::MMFFChg... Generating docs for compound ForceFields::MMFF::MMFFChgCollection... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEle... Generating docs for compound ForceFields::MMFF::MMFFCovRadPauEleCollection... Generating docs for compound ForceFields::MMFF::MMFFDef... Generating docs for compound ForceFields::MMFF::MMFFDefCollection... Generating docs for compound ForceFields::MMFF::MMFFDfsbCollection... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurie... Generating docs for compound ForceFields::MMFF::MMFFHerschbachLaurieCollection... Generating docs for compound ForceFields::MMFF::MMFFOop... Generating docs for compound ForceFields::MMFF::MMFFOopCollection... Generating docs for compound ForceFields::MMFF::MMFFPBCI... Generating docs for compound ForceFields::MMFF::MMFFPBCICollection... Generating docs for compound ForceFields::MMFF::MMFFProp... Generating docs for compound ForceFields::MMFF::MMFFPropCollection... Generating docs for compound ForceFields::MMFF::MMFFStbn... Generating docs for compound ForceFields::MMFF::MMFFStbnCollection... Generating docs for compound ForceFields::MMFF::MMFFTor... Generating docs for compound ForceFields::MMFF::MMFFTorCollection... Generating docs for compound ForceFields::MMFF::MMFFVdW... Generating docs for compound ForceFields::MMFF::MMFFVdWCollection... Generating docs for compound ForceFields::MMFF::MMFFVdWRijstarEps... Generating docs for compound ForceFields::MMFF::OopBendContrib... Generating docs for compound ForceFields::MMFF::PositionConstraintContrib... Generating docs for compound ForceFields::MMFF::StretchBendContrib... Generating docs for compound ForceFields::MMFF::TorsionAngleContrib... Generating docs for compound ForceFields::MMFF::TorsionConstraintContrib... Generating docs for compound ForceFields::MMFF::VdWContrib... Generating docs for namespace ForceFields::MMFF::Utils Generating docs for namespace ForceFields::UFF Generating docs for compound ForceFields::UFF::AngleBendContrib... Generating docs for compound ForceFields::UFF::AngleConstraintContrib... Generating docs for compound ForceFields::UFF::AtomicParams... Generating docs for compound ForceFields::UFF::BondStretchContrib... Generating docs for compound ForceFields::UFF::DistanceConstraintContrib... Generating docs for comp/build/rdkit-201809.1+dfsg/Code/ForceField/UFF/Inversion.h:39: warning: The following parameters of ForceFields::UFF::InversionContrib::InversionContrib(ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, int at2AtomicNum, bool isCBoundToO, double oobForceScalingFactor=1.0) are not documented: parameter 'oobForceScalingFactor' /build/rdkit-201809.1+dfsg/Code/ForceField/UFF/PositionConstraint.h:28: warning: argument 'minDispl' of command @param is not found in the argument list of ForceFields::UFF::PositionConstraintContrib::PositionConstraintContrib(ForceField *owner, unsigned int idx, double maxDispl, double forceConst) /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:73: warning: The following parameters of RDDepict::compute2DCoords(RDKit::ROMol &mol, const RDGeom::INT_POINT2D_MAP *coordMap=0, bool canonOrient=false, bool clearConfs=true, unsigned int nFlipsPerSample=0, unsigned int nSamples=0, int sampleSeed=0, bool permuteDeg4Nodes=false, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:130: warning: The following parameters of RDDepict::compute2DCoordsMimicDistMat(RDKit::ROMol &mol, const DOUBLE_SMART_PTR *dmat=0, bool canonOrient=true, bool clearConfs=true, double weightDistMat=0.5, unsigned int nFlipsPerSample=3, unsigned int nSamples=100, int sampleSeed=25, bool permuteDeg4Nodes=true, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:162: warning: The following parameters of RDDepict::generateDepictionMatching2DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=static_cast< RDKit::ROMol * >(0), bool acceptFailure=false, bool forceRDKit=false) are not documented: parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:170: warning: argument 'refPattern' of command @param is not found in the argument list of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=0, bool acceptFailure=false, bool forceRDKit=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/RDDepictor.h:189: warning: The following parameters of RDDepict::generateDepictionMatching3DStructure(RDKit::ROMol &mol, const RDKit::ROMol &reference, int confId=-1, RDKit::ROMol *referencePattern=0, bool acceptFailure=false, bool forceRDKit=false) are not documented: parameter 'referencePattern' parameter 'forceRDKit' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:94: warning: argument 'seq' of command @param is not found in the argument list of RDKit::HELMToMol(const char *helm, bool sanitize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/SequenceParsers.h:99: warning: The following parameters of RDKit::HELMToMol(const char *helm, bool sanitize=true) are not documented: parameter 'helm' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:105: warning: The following parameters of RDKit::LayeredFingerprintMol(const ROMol &mol, unsigned int layerFlags=0xFFFFFFFF, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, std::vector< unsigned int > *atomCounts=0, ExplicitBitVect *setOnlyBits=0, bool branchedPaths=true, const std::vector< boost::uint32_t > *fromAtoms=0) are not documented: parameter 'fromAtoms' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:485: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/QueryOps.h:494: warning: Found unknown command `\overloadquery' /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h:267: warning: argument 'fName' of command @param is not found in the argument list of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/FileParsers.h:278: warning: The following parameters of RDKit::MolToPDBFile(const ROMol &mol, const std::string &fname, int confId=-1, unsigned int flavor=0) are not documented: parameter 'fname' /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse/SmilesWrite.h:71: warning: The following parameters of RDKit::MolToSmiles(const ROMol &mol, bool doIsomericSmiles=true, bool doKekule=false, int rootedAtAtom=-1, bool canonical=true, bool allBondsExplicit=false, bool allHsExplicit=false, bool doRandom=false) are not documented: parameter 'doRandom' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'comment' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:236: warning: argument 'smartsColumn' of command @param is not found in the argument list of RDKit::parseQueryDefFile(const std::string &filename, std::map< std::string, ROMOL_SPTR > &queryDefs, bool standardize=true) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:26: warning: argument 'useBondOrders' of command @param is not found in the argument list of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Fingerprints.h:53: warning: The following parameters of RDKit::RDKFingerprintMol(const ROMol &mol, unsigned int minPath=1, unsigned int maxPath=7, unsigned int fpSize=2048, unsigned int nBitsPerHash=2, bool useHs=true, double tgtDensity=0.0, unsigned int minSize=128, bool branchedPaths=true, bool useBondOrder=true, std::vector< boost::uint32_t > *atomInvariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, std::vector< std::vector< boost::uint32_t > > *atomBits=0, std::map< boost::uint32_t, std::vector< std::vector< int > > > *bitInfo=0) are not documented: parameter 'useBondOrder' parameter 'bitInfo' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:96: warning: The following parameters of RDKit::reduceProductToSideChains(const ROMOL_SPTR &product, bool addDummyAtoms=true) are not documented: parameter 'product' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms/ChemTransforms.h:111: warning: argument 'useChirality' of command @param is not found in the argument list of RDKit::replaceCore(const ROMol &mol, const ROMol &core, const MatchVectType &matchVect, bool replaceDummies=true, bool labelByIndex=false, bool requireDummyMatch=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:64: warning: argument 'reactantTemplateIdx' of command @param is not found in the argument list of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/ReactionRunner.h:77: warning: The following parameters of RDKit::run_Reactant(const ChemicalReaction &rxn, const ROMOL_SPTR &reactant, unsigned int reactantIdx) are not documented: parameter 'rxn' parameter 'reactantIdx' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintGenerator.h:107: warning: The following parameters of RDKit::AtomEnvironment::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const=0 are not documented: parameter 'AdditionalOutput' ound ForceFields::UFF::InversionContrib... Generating docs for compound ForceFields::UFF::ParamCollection... Generating docs for compound ForceFields::UFF::PositionConstraintContrib... Generating docs for compound ForceFields::UFF::TorsionAngleContrib... Generating docs for compound ForceFields::UFF::TorsionConstraintContrib... Generating docs for compound ForceFields::UFF::UFFAngle... Generating docs for compound ForceFields::UFF::UFFBond... Generating docs for compound ForceFields::UFF::UFFInv... Generating docs for compound ForceFields::UFF::UFFTor... Generating docs for compound ForceFields::UFF::UFFVdW... Generating docs for compound ForceFields::UFF::vdWContrib... Generating docs for namespace ForceFields::UFF::Params Generating docs for namespace ForceFields::UFF::Utils Generating docs for namespace Invar Generating docs for compound Invar::Invariant... Generating docs for namespace MolTransforms Generating docs for namespace Queries Generating docs for compound Queries::AndQuery... Generating docs for compound Queries::EqualityQuery... Generating docs for compound Queries::GreaterEqualQuery... Generating docs for compound Queries::GreaterQuery... Generating docs for compound Queries::Int2Type... Generating docs for compound Queries::LessEqualQuery... Generating docs for compound Queries::LessQuery... Generating docs for compound Queries::OrQuery... Generating docs for compound Queries::Query... Generating docs for compound Queries::RangeQuery... Generating docs for compound Queries::SetQuery... Generating docs for compound Queries::XOrQuery... Generating docs for namespace Rankers Generating docs for compound Rankers::argless... Generating docs for compound Rankers::pairGreater... Generating docs for compound Rankers::pairLess... Generating docs for namespace RDCatalog Generating docs for compound RDCatalog::Catalog... Generating docs for compound RDCatalog::CatalogEntry... Generating docs for compound RDCatalog::CatalogParams... Generating docs for compound RDCatalog::HierarchCatalog... Generating docs for nested compound RDCatalog::HierarchCatalog::vertex_entry_t... Generating docs for compound RDCatalog::LinearCatalog... Generating docs for namespace RDDataManip Generating docs for compound RDDataManip::MetricMatrixCalc... Generating docs for namespace RDDepict Generating docs for compound RDDepict::DepictException... Generating docs for compound RDDepict::EmbeddedAtom... Generating docs for compound RDDepict::EmbeddedFrag... Generating docs for compound RDDepict::gtIIPair... Generating docs for namespace RDFeatures Generating docs for compound RDFeatures::ExplicitFeature... Generating docs for compound RDFeatures::ImplicitFeature... Generating docs for namespace RDGeom Generating docs for compound RDGeom::Grid3D... Generating docs for compound RDGeom::GridException... Generating docs for compound RDGeom::Point... Generating docs for compound RDGeom::Point2D... Generating docs for compound RDGeom::Point3D... Generating docs for compound RDGeom::PointND... Generating docs for compound RDGeom::Transform2D... Generating docs for compound RDGeom::Transform3D... Generating docs for compound RDGeom::UniformGrid3D... Generating docs for namespace RDInfoTheory Generating docs for compound RDInfoTheory::BitCorrMatGenerator... Generating docs for compound RDInfoTheory::InfoBitRanker... Generating docs for namespace RDKit Generating docs for compound RDKit::AdditionalOutput... Generating docs for compound RDKit::AromaticAtomIterator_... Generating docs for compound RDKit::Atom... Generating docs for compound RDKit::AtomEnvironment... Generating docs for compound RDKit::AtomEnvironmentGenerator... Generating docs for compound RDKit::atomicData... Generating docs for compound RDKit::AtomInvariantsGenerator... Generating docs for compound RDKit::AtomIterator_... Generating docs for compound RDKit::AtomMonomerInfo... Generating docs for compound RDKit::AtomPDBResidueInfo... Generating docs for compound RDKit::AtomRingQuery... Generating docs for compound RDKit::BadFileException... Generating docs for compound RDKit::Bond... /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h:207: warning: argument 'maxProducts' of command @param is not found in the argument list of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Reaction.h:221: warning: The following parameters of RDKit::ChemicalReaction::runReactants(const MOL_SPTR_VECT reactants, unsigned int numProducts=1000) const are not documented: parameter 'numProducts' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:415: warning: argument 'matches' of command @param is not found in the argument list of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:415: warning: The following parameters of RDKit::ExclusionList::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:100: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h:106: warning: The following parameters of RDKit::FilterMatcherBase::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const=0 are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:176: warning: The following parameters of RDKit::MolDraw2D::drawMolecule(const ROMol &mol, const std::string &legend, const std::vector< int > *highlight_atoms, const std::vector< int > *highlight_bonds, const std::map< int, DrawColour > *highlight_atom_map=NULL, const std::map< int, DrawColour > *highlight_bond_map=NULL, const std::map< int, double > *highlight_radii=NULL, int confId=-1) are not documented: parameter 'highlight_bonds' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'highlight_atom_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'highlight_bond_map' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:207: warning: argument 'confId' of command @param is not found in the argument list of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/MolDraw2D.h:231: warning: The following parameters of RDKit::MolDraw2D::drawMolecules(const std::vector< ROMol * > &mols, const std::vector< std::string > *legends=NULL, const std::vector< std::vector< int > > *highlight_atoms=NULL, const std::vector< std::vector< int > > *highlight_bonds=NULL, const std::vector< std::map< int, DrawColour > > *highlight_atom_maps=NULL, const std::vector< std::map< int, DrawColour > > *highlight_bond_maps=NULL, const std::vector< std::map< int, double > > *highlight_radii=NULL, const std::vector< int > *confIds=NULL) are not documented: parameter 'highlight_bonds' parameter 'highlight_atom_maps' parameter 'highlight_bond_maps' parameter 'confIds' Generating docs for compound RDKit::BondInvariantsGenerator... Generating docs for compound RDKit::BondIterator_... Generating docs for compound RDKit::CachedMolHolder... Generating docs for compound RDKit::CachedSmilesMolHolder... Generating docs for compound RDKit::CachedTrustedSmilesMolHolder... Generating docs for compound RDKit::CartesianProductStrategy... Generating docs for compound RDKit::charptr_functor... Generating docs for compound RDKit::ChemicalReaction... Generating docs for compound RDKit::ChemicalReactionException... Generating docs for compound RDKit::ChemicalReactionParserException... Generating docs for compound RDKit::Conformer... Generating docs for compound RDKit::ConformerException... Generating docs for compound RDKit::ConstBondIterator_... Generating docs for compound RDKit::CXXAtomIterator... Generating docs for nested compound RDKit::CXXAtomIterator::CXXAtomIter... Generating docs for compound RDKit::CXXBondIterator... Generating docs for nested compound RDKit::CXXBondIterator::CXXBondIter... Generating docs for compound RDKit::Dict... Generating docs for nested compound RDKit::Dict::Pair... Generating docs for compound RDKit::DiscreteDistMat... Generating docs for compound RDKit::DiscreteValueVect... Generating docs for compound RDKit::EnumerateLibrary... Generating docs for compound RDKit::EnumerateLibraryBase... Generating docs for compound RDKit::EnumerationParams... Generating docs for compound RDKit::EnumerationStrategyBase... Generating docs for compound RDKit::EnumerationStrategyException... Generating docs for compound RDKit::EvenSamplePairsStrategy... Generating docs for compound RDKit::ExclusionList... Generating docs for compound RDKit::FeatureFileParseException... Generating docs for compound RDKit::FileParseException... Generating docs for compound RDKit::FilterCatalog... Generating docs for compound RDKit::FilterCatalogEntry... Generating docs for compound RDKit::FilterCatalogParams... Generating docs for compound RDKit::FilterData_t... Generating docs for compound RDKit::FilterHierarchyMatcher... Generating docs for compound RDKit::FilterMatch... Generating docs for compound RDKit::FilterMatcherBase... Generating docs for compound RDKit::FilterProperty_t... Generating docs for compound RDKit::FingerprintArguments... Generating docs for compound RDKit::FingerprintGenerator... Generating docs for compound RDKit::ForwardSDMolSupplier... Generating docs for compound RDKit::FPBReader... Generating docs for compound RDKit::FPHolderBase... Generating docs for compound RDKit::FragCatalogEntry... Generating docs for compound RDKit::FragCatGenerator... Generating docs for compound RDKit::FragCatParams... Generating docs for compound RDKit::FragFPGenerator... Generating docs for compound RDKit::GasteigerParams... Generating docs for compound RDKit::HasPropQuery... Generating docs for compound RDKit::HasPropWithValueQuery... Generating docs for compound RDKit::HasPropWithValueQuery< TargetPtr, std::string >... Generating docs for compound RDKit::HeteroatomIterator_... Generating docs for compound RDKit::larger_of... Generating docs for compound RDKit::ltDouble... Generating docs for compound RDKit::MatchingAtomIterator_... Generating docs for compound RDKit::MCSAtomCompareParameters... Generating docs for compound RDKit::MCSBondCompareParameters... Generating docs for compound RDKit::MCSParameters... Generating docs for compound RDKit::MCSProgressData... Generating docs for compound RDKit::MCSResult... Generating docs for compound RDKit::MolBundle... Generating docs for compound RDKit::MolCatalogEntry... Generating docs for compound RDKit::MolCatalogParams... Generating docs for compound RDKit::MolChemicalFeature... Generating docs for compound RDKit::MolChemicalFeatureDef... Generating docs for compound RDKit::MolChemicalFeatureFactory... Generating docs for compound RDKit::MolDraw2D... Generating docs for compound RDKit::MolDraw2DCairo... Generating docs for compound RDKit::MolDraw2DQt... Generating docs for compound RDKit::MolDraw2DSVG... Generating docs for compound RDKit::MolDraw2Dwx./build/rdkit-201809.1+dfsg/Code/GraphMol/Resonance.h:56: warning: argument 'numThreads' of command @param is not found in the argument list of RDKit::ResonanceMolSupplier::ResonanceMolSupplier(ROMol &mol, unsigned int flags=0, unsigned int maxStructs=1000) /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:322: warning: argument 'matches' of command @param is not found in the argument list of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:322: warning: The following parameters of RDKit::SmartsMatcher::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'delimiter' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'smilesColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'nameColumn' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'titleLine' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers/MolSupplier.h:206: warning: argument 'sanitize' of command @param is not found in the argument list of RDKit::SmilesMolSupplier::SmilesMolSupplier(const std::string &fileName) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairGenerator.h:103: warning: The following parameters of RDKit::AtomPair::AtomPairAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/AtomPairs.h:121: warning: The following parameters of RDKit::AtomPairs::getHashedAtomPairFingerprint(const ROMol &mol, unsigned int nBits=2048, unsigned int minLength=1, unsigned int maxLength=maxPathLen - 1, const std::vector< boost::uint32_t > *fromAtoms=0, const std::vector< boost::uint32_t > *ignoreAtoms=0, const std::vector< boost::uint32_t > *atomInvariants=0, bool includeChirality=false, bool use2D=true, int confId=-1) are not documented: parameter 'confId' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/FingerprintUtil.h:77: warning: The following parameters of RDKit::AtomPairs::getTopologicalTorsionCode(const std::vector< std::uint32_t > &atomCodes, bool includeChirality=false) are not documented: parameter 'includeChirality' /build/rdkit-201809.1+dfsg/Code/GraphMol/Canon.h:113: warning: The following parameters of RDKit::Canon::canonicalizeFragment(ROMol &mol, int atomIdx, std::vector< AtomColors > &colors, const std::vector< unsigned int > &ranks, MolStack &molStack, const boost::dynamic_bitset<> *bondsInPlay=0, const std::vector< std::string > *bondSymbols=0, bool doIsomericSmiles=false, bool doRandom=false) are not documented: parameter 'bondsInPlay' parameter 'bondSymbols' parameter 'doIsomericSmiles' parameter 'doRandom' /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h:45: warning: argument 'strict' of command @param is not found in the argument list of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Lipinski.h:52: warning: The following parameters of RDKit::Descriptors::calcNumRotatableBonds(const ROMol &mol, NumRotatableBondsOptions useStrictDefinition=Default) are not documented: parameter 'useStrictDefinition' /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/USRDescriptor.h:79: warning: The following parameters of RDKit::Descriptors::USRCAT(const ROMol &mol, std::vector< double > &descriptor, std::vector< std::vector< unsigned int >> &atomIds, int confId=-1) are not documented: parameter 'atomIds' .. Generating docs for compound RDKit::MolDrawOptions... Generating docs for compound RDKit::MolHolder... Generating docs for compound RDKit::MolHolderBase... Generating docs for compound RDKit::MolPickler... Generating docs for compound RDKit::MolPicklerException... Generating docs for compound RDKit::MolSanitizeException... Generating docs for compound RDKit::MolSupplier... Generating docs for compound RDKit::MolWriter... Generating docs for compound RDKit::MultiFPBReader... Generating docs for compound RDKit::MultiMolDraw2D... Generating docs for compound RDKit::PatternHolder... Generating docs for compound RDKit::PDBMolSupplier... Generating docs for compound RDKit::PDBWriter... Generating docs for compound RDKit::PeriodicTable... Generating docs for compound RDKit::QueryAtom... Generating docs for compound RDKit::QueryAtomIterator_... Generating docs for compound RDKit::QueryBond... Generating docs for compound RDKit::RandomSampleAllBBsStrategy... Generating docs for compound RDKit::RandomSampleStrategy... Generating docs for compound RDKit::RDAny... Generating docs for compound RDKit::RDProps... Generating docs for compound RDKit::RDValue... Generating docs for compound RDKit::ReactionFingerprintParams... Generating docs for compound RDKit::ReactionPickler... Generating docs for compound RDKit::ReactionPicklerException... Generating docs for compound RDKit::RecursiveStructureQuery... Generating docs for compound RDKit::ResonanceMolSupplier... Generating docs for compound RDKit::RGroupDecomposition... Generating docs for compound RDKit::RGroupDecompositionParameters... Generating docs for compound RDKit::RingInfo... Generating docs for compound RDKit::ROMol... Generating docs for compound RDKit::RWMol... Generating docs for compound RDKit::RxnSanitizeException... Generating docs for compound RDKit::SDMolSupplier... Generating docs for compound RDKit::SDWriter... Generating docs for compound RDKit::SLNParseException... Generating docs for compound RDKit::SmartsMatcher... Generating docs for compound RDKit::SmilesMolSupplier... Generating docs for compound RDKit::SmilesParseException... Generating docs for compound RDKit::SmilesParserParams... Generating docs for compound RDKit::SmilesWriter... Generating docs for compound RDKit::Snapshot... Generating docs for compound RDKit::SparseIntVect... Generating docs for compound RDKit::StereoGroup... Generating docs for compound RDKit::SubstructLibrary... Generating docs for compound RDKit::TDTMolSupplier... Generating docs for compound RDKit::TDTWriter... Generating docs for compound RDKit::Trajectory... Generating docs for compound RDKit::UnimplementedFPException... Generating docs for namespace RDKit::AtomPair Generating docs for compound RDKit::AtomPair::AtomPairArguments... Generating docs for compound RDKit::AtomPair::AtomPairAtomEnv... Generating docs for compound RDKit::AtomPair::AtomPairAtomInvGenerator... Generating docs for compound RDKit::AtomPair::AtomPairEnvGenerator... Generating docs for namespace RDKit::AtomPairs Generating docs for namespace RDKit::Canon Generating docs for compound RDKit::Canon::AtomCompareFunctor... Generating docs for compound RDKit::Canon::bondholder... Generating docs for compound RDKit::Canon::canon_atom... Generating docs for compound RDKit::Canon::ChiralAtomCompareFunctor... Generating docs for compound RDKit::Canon::MolStackElem... Generating docs for compound RDKit::Canon::MolStackUnion... Generating docs for compound RDKit::Canon::SpecialChiralityAtomCompareFunctor... Generating docs for compound RDKit::Canon::SpecialSymmetryAtomCompareFunctor... Generating docs for namespace RDKit::common_properties Generating docs for namespace RDKit::constants Generating docs for namespace RDKit::Descriptors Generating docs for compound RDKit::Descriptors::CrippenParamCollection... Generating docs for compound RDKit::Descriptors::CrippenParams... Generating docs for compound RDKit::Descriptors::Properties... Generating docs for compound RDKit::Descriptors::PropertyFunctor... Generating docs for namespace RDKit::Descriptors::detail Generating d/build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:86: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:86: warning: The following parameters of RDKit::FilterMatchOps::And::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:204: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:204: warning: The following parameters of RDKit::FilterMatchOps::Not::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:148: warning: argument 'matches' of command @param is not found in the argument list of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const inherited from member getMatches at line 100 in file /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatcherBase.h /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/FilterMatchers.h:148: warning: The following parameters of RDKit::FilterMatchOps::Or::getMatches(const ROMol &mol, std::vector< FilterMatch > &matchVect) const are not documented: parameter 'matchVect' /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h:36: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int maxCuts=3, unsigned int maxCutBonds=20, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/MMPA.h:57: warning: The following parameters of RDKit::MMPA::fragmentMol(const ROMol &mol, std::vector< std::pair< ROMOL_SPTR, ROMOL_SPTR > > &result, unsigned int minCuts, unsigned int maxCuts, unsigned int maxCutBonds, const std::string &pattern="[#6+0;!$(*=,#[!#6])]!@!=!#[*]") are not documented: parameter 'pattern' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h:645: warning: The following parameters of RDKit::MolOps::getAdjacencyMatrix(const ROMol &mol, bool useBO=false, int emptyVal=0, bool force=false, const char *propNamePrefix=0, const boost::dynamic_bitset<> *bondsToUse=0) are not documented: parameter 'bondsToUse' /build/rdkit-201809.1+dfsg/Code/GraphMol/MolOps.h:257: warning: The following parameters of RDKit::MolOps::mergeQueryHs(const ROMol &mol, bool mergeUnmappedOnly=false) are not documented: parameter 'mergeUnmappedOnly' ocs for namespace RDKit::detail Generating docs for namespace RDKit::DGeomHelpers Generating docs for compound RDKit::DGeomHelpers::EmbedParameters... Generating docs for namespace RDKit::DTags Generating docs for namespace RDKit::EnumerationStrategyPickler Generating docs for namespace RDKit::EnumerationTypes Generating docs for namespace RDKit::FileParserUtils Generating docs for namespace RDKit::FilterMatchOps Generating docs for compound RDKit::FilterMatchOps::And... Generating docs for compound RDKit::FilterMatchOps::Not... Generating docs for compound RDKit::FilterMatchOps::Or... Generating docs for namespace RDKit::FMCS Generating docs for compound RDKit::FMCS::Composition2N... Generating docs for compound RDKit::FMCS::DuplicatedSeedCache... Generating docs for nested compound RDKit::FMCS::DuplicatedSeedCache::TKey... Generating docs for compound RDKit::FMCS::ExecStatistics... Generating docs for compound RDKit::FMCS::Graph... Generating docs for compound RDKit::FMCS::MaximumCommonSubgraph... Generating docs for compound RDKit::FMCS::MolFragment... Generating docs for compound RDKit::FMCS::NewBond... Generating docs for compound RDKit::FMCS::RingMatchTableSet... Generating docs for compound RDKit::FMCS::Seed... Generating docs for compound RDKit::FMCS::SeedSet... Generating docs for compound RDKit::FMCS::SubstructureCache... Generating docs for nested compound RDKit::FMCS::SubstructureCache::HashKey... Generating docs for nested compound RDKit::FMCS::SubstructureCache::KeyNumericMetrics... Generating docs for compound RDKit::FMCS::Target... Generating docs for compound RDKit::FMCS::TargetMatch... Generating docs for compound RDKit::FMCS::TArray2D... Generating docs for namespace RDKit::Local Generating docs for namespace RDKit::MACCSFingerprints Generating docs for namespace RDKit::MMFF Generating docs for compound RDKit::MMFF::MMFFAtomProperties... Generating docs for compound RDKit::MMFF::MMFFMolProperties... Generating docs for namespace RDKit::MMFF::Tools Generating docs for compound RDKit::MMFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::MMPA Generating docs for namespace RDKit::MolAlign Generating docs for compound RDKit::MolAlign::LAP... Generating docs for compound RDKit::MolAlign::MolAlignException... Generating docs for compound RDKit::MolAlign::MolHistogram... Generating docs for compound RDKit::MolAlign::O3A... Generating docs for compound RDKit::MolAlign::O3AConstraint... Generating docs for compound RDKit::MolAlign::O3AConstraintVect... Generating docs for compound RDKit::MolAlign::O3AFuncData... Generating docs for compound RDKit::MolAlign::SDM... Generating docs for namespace RDKit::MolDraw2D_detail Generating docs for namespace RDKit::MolDraw2DUtils Generating docs for namespace RDKit::MolFragmenter Generating docs for compound RDKit::MolFragmenter::FragmenterBondType... Generating docs for namespace RDKit::MolHash Generating docs for compound RDKit::MolHash::HashSet... Generating docs for namespace RDKit::MolInterchange Generating docs for compound RDKit::MolInterchange::JSONParseParameters... Generating docs for namespace RDKit::MolOps Generating docs for compound RDKit::MolOps::AdjustQueryParameters... Generating docs for namespace RDKit::MolShapes Generating docs for namespace RDKit::MolStandardize Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogEntry... Generating docs for compound RDKit::MolStandardize::AcidBaseCatalogParams... Generating docs for compound RDKit::MolStandardize::AllowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::ChargeCorrection... Generating docs for compound RDKit::MolStandardize::CleanupParameters... Generating docs for compound RDKit::MolStandardize::DisallowedAtomsValidation... Generating docs for compound RDKit::MolStandardize::FragmentCatalogEntry... Generating docs for compound RDKit::MolStandardize::FragmentCatalogParams... Generating docs for compound RDKit::MolStandardize::FragmentRemover... Generating docs for compound RDKit::MolStandardize::FragmentValidation... Generating docs for compou/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:189: warning: argument 'OutputType' of command @param is not found in the argument list of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:189: warning: argument 'radiu' of command @param is not found in the argument list of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:228: warning: The following parameters of RDKit::MorganFingerprint::getMorganGenerator(const unsigned int radius, const bool countSimulation=true, const bool includeChirality=false, const bool useBondTypes=true, const bool onlyNonzeroInvariants=false, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, BondInvariantsGenerator *bondInvariantsGenerator=nullptr, const std::uint32_t fpSize=2048, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const bool ownsAtomInvGen=false, const bool ownsBondInvGen=false) are not documented: parameter 'radius' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganGenerator.h:151: warning: The following parameters of RDKit::MorganFingerprint::MorganAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/MorganFingerprints.h:152: warning: The following parameters of RDKit::MorganFingerprints::getHashedFingerprint(const ROMol &mol, unsigned int radius, unsigned int nBits=2048, std::vector< boost::uint32_t > *invariants=0, const std::vector< boost::uint32_t > *fromAtoms=0, bool useChirality=false, bool useBondTypes=true, bool onlyNonzeroInvariants=false, BitInfoMap *atomsSettingBits=0) are not documented: parameter 'nBits' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:109: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::RDKitFP::getRDKitFPGenerator(const unsigned int minPath=1, const unsigned int maxPath=7, const bool useHs=true, const bool branchedPaths=true, const bool useBondOrder=true, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:133: warning: The following parameters of RDKit::RDKitFP::getRDKitFPGenerator(const unsigned int minPath=1, const unsigned int maxPath=7, const bool useHs=true, const bool branchedPaths=true, const bool useBondOrder=true, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) are not documented: parameter 'countSimulation' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:35: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::RDKitFP::RDKitFPArguments< OutputType >::RDKitFPArguments(unsigned int minPath, unsigned int maxPath, bool useHs, bool branchedPaths, bool useBondOrder, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:52: warning: The following parameters of RDKit::RDKitFP::RDKitFPArguments::RDKitFPArguments(unsigned int minPath, unsigned int maxPath, bool useHs, bool branchedPaths, bool useBondOrder, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) are not documented: parameter 'countSimulation' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/RDKitFPGenerator.h:75: warning: The following parameters of RDKit::RDKitFP::RDKitFPAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/ReducedGraphs.h:34: warning: The following parameters of RDKit::ReducedGraphs::generateMolExtendedReducedGraph(const ROMol &mol, std::vector< boost::dynamic_bitset<> > *atomTypes=0) are not documented: parameter 'atomTypes' /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h:124: warning: argument 'operationThatFailed' of command @param is not found in the argument list of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/SanitizeRxn.h:155: warning: The following parameters of RDKit::RxnOps::sanitizeRxn(ChemicalReaction &rxn, unsigned int &operationsThatFailed, unsigned int sanitizeOps=SANITIZE_ALL, const MolOps::AdjustQueryParameters ¶ms=DefaultRxnAdjustParams()) are not documented: parameter 'operationsThatFailed' parameter 'params' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:87: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(const bool includeChirality=false, const uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:108: warning: The following parameters of RDKit::TopologicalTorsion::getTopologicalTorsionGenerator(const bool includeChirality=false, const uint32_t torsionAtomCount=4, AtomInvariantsGenerator *atomInvariantsGenerator=nullptr, const bool countSimulation=true, const std::vector< std::uint32_t > countBounds={1, 2, 4, 8}, const std::uint32_t fpSize=2048, const bool ownsAtomInvGen=false) are not documented: parameter 'countSimulation' /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:33: warning: argument 'useCountSimulation' of command @param is not found in the argument list of RDKit::TopologicalTorsion::TopologicalTorsionArguments< OutputType >::TopologicalTorsionArguments(const bool includeChirality, const uint32_t torsionAtomCount, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:44: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionArguments::TopologicalTorsionArguments(const bool includeChirality, const uint32_t torsionAtomCount, const bool countSimulation, const std::vector< std::uint32_t > countBounds, const std::uint32_t fpSize) are not documented: parameter 'countSimulation' nd RDKit::MolStandardize::IsotopeValidation... Generating docs for compound RDKit::MolStandardize::LargestFragmentChooser... Generating docs for nested compound RDKit::MolStandardize::LargestFragmentChooser::Largest... Generating docs for compound RDKit::MolStandardize::MetalDisconnector... Generating docs for compound RDKit::MolStandardize::MolVSValidation... Generating docs for compound RDKit::MolStandardize::MolVSValidations... Generating docs for compound RDKit::MolStandardize::NeutralValidation... Generating docs for compound RDKit::MolStandardize::NoAtomValidation... Generating docs for compound RDKit::MolStandardize::Normalizer... Generating docs for nested compound RDKit::MolStandardize::Normalizer::Product... Generating docs for compound RDKit::MolStandardize::RDKitValidation... Generating docs for compound RDKit::MolStandardize::Reionizer... Generating docs for compound RDKit::MolStandardize::TautomerCanonicalizer... Generating docs for compound RDKit::MolStandardize::TautomerCatalogEntry... Generating docs for compound RDKit::MolStandardize::TautomerCatalogParams... Generating docs for compound RDKit::MolStandardize::TautomerEnumerator... Generating docs for compound RDKit::MolStandardize::TautomerTransform... Generating docs for compound RDKit::MolStandardize::TransformCatalogEntry... Generating docs for compound RDKit::MolStandardize::TransformCatalogParams... Generating docs for compound RDKit::MolStandardize::Uncharger... Generating docs for compound RDKit::MolStandardize::ValidationErrorInfo... Generating docs for compound RDKit::MolStandardize::ValidationMethod... Generating docs for namespace RDKit::MorganFingerprint Generating docs for compound RDKit::MorganFingerprint::MorganArguments... Generating docs for compound RDKit::MorganFingerprint::MorganAtomEnv... Generating docs for compound RDKit::MorganFingerprint::MorganAtomInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganBondInvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganEnvGenerator... Generating docs for compound RDKit::MorganFingerprint::MorganFeatureAtomInvGenerator... Generating docs for namespace RDKit::MorganFingerprints Generating docs for compound RDKit::MorganFingerprints::ss_matcher... Generating docs for namespace RDKit::PicklerOps Generating docs for namespace RDKit::RDKitFP Generating docs for compound RDKit::RDKitFP::RDKitFPArguments... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomEnv... Generating docs for compound RDKit::RDKitFP::RDKitFPAtomInvGenerator... Generating docs for compound RDKit::RDKitFP::RDKitFPEnvGenerator... Generating docs for namespace RDKit::RDKitFPUtils Generating docs for namespace RDKit::RDTypeTag Generating docs for namespace RDKit::RDTypeTag::detail Generating docs for compound RDKit::RDTypeTag::detail::Value... Generating docs for namespace RDKit::ReactionRunnerUtils Generating docs for namespace RDKit::ReducedGraphs Generating docs for namespace RDKit::RxnOps Generating docs for namespace RDKit::SLNParse Generating docs for compound RDKit::SLNParse::AttribType... Generating docs for namespace RDKit::SmartsWrite Generating docs for namespace RDKit::SmilesWrite Generating docs for namespace RDKit::StructureCheck Generating docs for compound RDKit::StructureCheck::AugmentedAtom... Generating docs for compound RDKit::StructureCheck::ChargeFix... Generating docs for compound RDKit::StructureCheck::IncEntry... Generating docs for compound RDKit::StructureCheck::Ligand... Generating docs for compound RDKit::StructureCheck::Neighbourhood... Generating docs for compound RDKit::StructureCheck::PathEntry... Generating docs for compound RDKit::StructureCheck::StructChecker... Generating docs for compound RDKit::StructureCheck::StructCheckerOptions... Generating docs for compound RDKit::StructureCheck::StructCheckTautomer... Generating docs for namespace RDKit::Subgraphs Generating docs for namespace RDKit::TopologicalTorsion Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionArguments... Generating docs for compound RDKit::Topologic/build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.h:57: warning: The following parameters of RDKit::TopologicalTorsion::TopologicalTorsionAtomEnv::getBitId(FingerprintArguments< OutputType > *arguments, const std::vector< std::uint32_t > *atomInvariants, const std::vector< std::uint32_t > *bondInvariants, const AdditionalOutput *AdditionalOutput, const bool hashResults=false) const are not documented: parameter 'AdditionalOutput' /build/rdkit-201809.1+dfsg/Code/SimDivPickers/HierarchicalClusterPicker.h:80: warning: The following parameters of RDPickers::HierarchicalClusterPicker::pick(const double *distMat, unsigned int poolSize, unsigned int pickSize) const are not documented: parameter 'distMat' /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h:54: warning: argument 'firstPicks' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const /build/rdkit-201809.1+dfsg/Code/SimDivPickers/MaxMinPicker.h:54: warning: argument 'seed' of command @param is not found in the argument list of RDPickers::MaxMinPicker::lazyPick(T &func, unsigned int poolSize, unsigned int pickSize) const alTorsion::TopologicalTorsionAtomEnv... Generating docs for compound RDKit::TopologicalTorsion::TopologicalTorsionEnvGenerator... Generating docs for namespace RDKit::UFF Generating docs for namespace RDKit::UFF::Tools Generating docs for compound RDKit::UFF::Tools::DefaultTorsionBondSmarts... Generating docs for namespace RDKit::Utils Generating docs for compound RDKit::Utils::LocaleSwitcher... Generating docs for namespace RDKit::Utils::detail Generating docs for namespace RDLog Generating docs for namespace RDNumeric Generating docs for compound RDNumeric::Matrix... Generating docs for compound RDNumeric::SquareMatrix... Generating docs for compound RDNumeric::SymmMatrix... Generating docs for compound RDNumeric::Vector... Generating docs for namespace RDNumeric::Alignments Generating docs for namespace RDNumeric::EigenSolvers Generating docs for namespace RDPickers Generating docs for compound RDPickers::DistPicker... Generating docs for compound RDPickers::HierarchicalClusterPicker... Generating docs for compound RDPickers::MaxMinPicker... Generating docs for compound RDPickers::MaxMinPickInfo... Generating docs for namespace RingUtils Generating docs for namespace SmilesParseOps Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 15926/65536 hits=133999 misses=17233 finished... (cd /build/rdkit-201809.1+dfsg/Docs/Book; RDBASE=/build/rdkit-201809.1+dfsg /usr/bin/make html) make[2]: Entering directory '/build/rdkit-201809.1+dfsg/Docs/Book' mkdir -p _build/html/cppapi cp -r /build/rdkit-201809.1+dfsg/Code/docs/* _build/html/cppapi sphinx-build -b html -d _build/doctrees . _build/html Running Sphinx v1.8.4 building [mo]: targets for 0 po files that are out of date building [html]: targets for 296 source files that are out of date updating environment: 296 added, 0 changed, 0 removed reading sources... [ 0%] BackwardsIncompatibleChanges reading sources... [ 0%] Cartridge reading sources... [ 1%] Cookbook reading sources... [ 1%] GettingStartedInPython reading sources... [ 1%] Install reading sources... [ 2%] Overview reading sources... [ 2%] RDKit_Book reading sources... [ 2%] api-docs reading sources... [ 3%] index reading sources... [ 3%] source/modules reading sources... [ 3%] source/rdkit reading sources... [ 4%] source/rdkit.Avalon reading sources... [ 4%] source/rdkit.Avalon.pyAvalonTools reading sources... [ 4%] source/rdkit.Chem reading sources... [ 5%] source/rdkit.Chem.AllChem reading sources... [ 5%] source/rdkit.Chem.AtomPairs reading sources... [ 5%] source/rdkit.Chem.AtomPairs.Pairs reading sources... [ 6%] source/rdkit.Chem.AtomPairs.Sheridan reading sources... [ 6%] source/rdkit.Chem.AtomPairs.Torsions reading sources... [ 6%] source/rdkit.Chem.AtomPairs.Utils reading sources... [ 7%] source/rdkit.Chem.BRICS reading sources... [ 7%] source/rdkit.Chem.BuildFragmentCatalog reading sources... [ 7%] source/rdkit.Chem.ChemUtils reading sources... [ 8%] source/rdkit.Chem.ChemUtils.AlignDepict reading sources... [ 8%] source/rdkit.Chem.ChemUtils.BulkTester reading sources... [ 8%] source/rdkit.Chem.ChemUtils.DescriptorUtilities reading sources... [ 9%] source/rdkit.Chem.ChemUtils.SDFToCSV reading sources... [ 9%] source/rdkit.Chem.ChemUtils.TemplateExpand reading sources... [ 9%] source/rdkit.Chem.ChemicalFeatures reading sources... [ 10%] source/rdkit.Chem.ChemicalForceFields reading sources... [ 10%] source/rdkit.Chem.Crippen reading sources... [ 10%] source/rdkit.Chem.DSViewer reading sources... [ 11%] source/rdkit.Chem.Descriptors reading sources... [ 11%] source/rdkit.Chem.Descriptors3D reading sources... [ 11%] source/rdkit.Chem.Draw reading sources... [ 12%] source/rdkit.Chem.Draw.IPythonConsole reading sources... [ 12%] source/rdkit.Chem.Draw.MolDrawing reading sources... [ 12%] source/rdkit.Chem.Draw.SimilarityMaps reading sources... [ 13%] source/rdkit.Chem.Draw.aggCanvas reading sources... [ 13%] source/rdkit.Chem.Draw.cairoCanvas reading sources... [ 13%] source/rdkit.Chem.Draw.canvasbase reading sources... [ 14%] source/rdkit.Chem.Draw.mplCanvas reading sources... [ 14%] source/rdkit.Chem.Draw.qtCanvas reading sources... [ 14%] source/rdkit.Chem.Draw.rdMolDraw2D reading sources... [ 15%] source/rdkit.Chem.EState reading sources... [ 15%] source/rdkit.Chem.EState.AtomTypes reading sources... [ 15%] source/rdkit.Chem.EState.EState reading sources... [ 16%] source/rdkit.Chem.EState.EState_VSA reading sources... [ 16%] source/rdkit.Chem.EState.Fingerprinter reading sources... [ 16%] source/rdkit.Chem.EnumerateHeterocycles reading sources... [ 17%] source/rdkit.Chem.EnumerateStereoisomers reading sources... [ 17%] source/rdkit.Chem.FastSDMolSupplier reading sources... [ 17%] source/rdkit.Chem.FeatFinderCLI reading sources... [ 18%] source/rdkit.Chem.FeatMaps reading sources... [ 18%] source/rdkit.Chem.FeatMaps.FeatMapParser reading sources... [ 18%] source/rdkit.Chem.FeatMaps.FeatMapPoint reading sources... [ 19%] source/rdkit.Chem.FeatMaps.FeatMapUtils reading sources... [ 19%] source/rdkit.Chem.FeatMaps.FeatMaps reading sources... [ 19%] source/rdkit.Chem.Features reading sources... [ 20%] source/rdkit.Chem.Features.FeatDirUtilsRD reading sources... [ 20%] source/rdkit.Chem.Features.ShowFeats reading sources... [ 20%] source/rdkit.Chem.FilterCatalog reading sources... [ 21%] source/rdkit.Chem.Fingerprints reading sources... [ 21%] source/rdkit.Chem.Fingerprints.ClusterMols reading sources... [ 21%] source/rdkit.Chem.Fingerprints.DbFpSupplier reading sources... [ 22%] source/rdkit.Chem.Fingerprints.FingerprintMols reading sources... [ 22%] source/rdkit.Chem.Fingerprints.MolSimilarity reading sources... [ 22%] source/rdkit.Chem.Fingerprints.SimilarityScreener reading sources... [ 23%] source/rdkit.Chem.Fraggle reading sources... [ 23%] source/rdkit.Chem.Fraggle.FraggleSim reading sources... [ 23%] source/rdkit.Chem.FragmentCatalog reading sources... [ 24%] source/rdkit.Chem.FragmentMatcher reading sources... [ 24%] source/rdkit.Chem.Fragments reading sources... [ 25%] source/rdkit.Chem.FunctionalGroups reading sources... [ 25%] source/rdkit.Chem.GraphDescriptors reading sources... [ 25%] source/rdkit.Chem.Graphs reading sources... [ 26%] source/rdkit.Chem.Lipinski reading sources... [ 26%] source/rdkit.Chem.MACCSkeys reading sources... [ 26%] source/rdkit.Chem.MCS reading sources... [ 27%] source/rdkit.Chem.MolCatalog reading sources... [ 27%] source/rdkit.Chem.MolDb reading sources... [ 27%] source/rdkit.Chem.MolDb.FingerprintUtils reading sources... [ 28%] source/rdkit.Chem.MolDb.Loader reading sources... [ 28%] source/rdkit.Chem.MolDb.Loader_orig reading sources... [ 28%] source/rdkit.Chem.MolDb.Loader_sa reading sources... [ 29%] source/rdkit.Chem.MolKey reading sources... [ 29%] source/rdkit.Chem.MolKey.InchiInfo reading sources... [ 29%] source/rdkit.Chem.MolKey.MolKey reading sources... [ 30%] source/rdkit.Chem.MolStandardize reading sources... [ 30%] source/rdkit.Chem.MolStandardize.rdMolStandardize reading sources... [ 30%] source/rdkit.Chem.MolSurf reading sources... [ 31%] source/rdkit.Chem.PandasTools reading sources... [ 31%] source/rdkit.Chem.PeriodicTable reading sources... [ 31%] source/rdkit.Chem.Pharm2D reading sources... [ 32%] source/rdkit.Chem.Pharm2D.Generate reading sources... [ 32%] source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D reading sources... [ 32%] source/rdkit.Chem.Pharm2D.LazyGenerator reading sources... [ 33%] source/rdkit.Chem.Pharm2D.Matcher reading sources... [ 33%] source/rdkit.Chem.Pharm2D.SigFactory reading sources... [ 33%] source/rdkit.Chem.Pharm2D.Utils reading sources... [ 34%] source/rdkit.Chem.Pharm3D reading sources... [ 34%] source/rdkit.Chem.Pharm3D.EmbedLib reading sources... [ 34%] source/rdkit.Chem.Pharm3D.ExcludedVolume reading sources... [ 35%] source/rdkit.Chem.Pharm3D.Pharmacophore reading sources... [ 35%] source/rdkit.Chem.PropertyMol reading sources... [ 35%] source/rdkit.Chem.PyMol reading sources... [ 36%] source/rdkit.Chem.QED reading sources... [ 36%] source/rdkit.Chem.Randomize reading sources... [ 36%] source/rdkit.Chem.Recap reading sources... [ 37%] source/rdkit.Chem.ReducedGraphs reading sources... [ 37%] source/rdkit.Chem.SATIS reading sources... [ 37%] source/rdkit.Chem.SaltRemover reading sources... [ 38%] source/rdkit.Chem.Scaffolds reading sources... [ 38%] source/rdkit.Chem.Scaffolds.MurckoScaffold reading sources... [ 38%] source/rdkit.Chem.Scaffolds.ScaffoldTree reading sources... [ 39%] source/rdkit.Chem.ShowMols reading sources... [ 39%] source/rdkit.Chem.SimpleEnum reading sources... [ 39%] source/rdkit.Chem.SimpleEnum.Enumerator reading sources... [ 40%] source/rdkit.Chem.Subshape reading sources... [ 40%] source/rdkit.Chem.Subshape.BuilderUtils reading sources... [ 40%] source/rdkit.Chem.Subshape.SubshapeAligner reading sources... [ 41%] source/rdkit.Chem.Subshape.SubshapeBuilder reading sources... [ 41%] source/rdkit.Chem.Subshape.SubshapeObjects reading sources... [ 41%] source/rdkit.Chem.Subshape.testCombined reading sources... [ 42%] source/rdkit.Chem.Suppliers reading sources... [ 42%] source/rdkit.Chem.Suppliers.DbMolSupplier reading sources... [ 42%] source/rdkit.Chem.Suppliers.MolSupplier reading sources... [ 43%] source/rdkit.Chem.TemplateAlign reading sources... [ 43%] source/rdkit.Chem.TorsionFingerprints reading sources... [ 43%] source/rdkit.Chem.fmcs reading sources... [ 44%] source/rdkit.Chem.fmcs.fmcs reading sources... [ 44%] source/rdkit.Chem.inchi reading sources... [ 44%] source/rdkit.Chem.rdChemReactions reading sources... [ 45%] source/rdkit.Chem.rdChemicalFeatures reading sources... [ 45%] source/rdkit.Chem.rdCoordGen reading sources... [ 45%] source/rdkit.Chem.rdDepictor reading sources... [ 46%] source/rdkit.Chem.rdDistGeom reading sources... [ 46%] source/rdkit.Chem.rdFMCS reading sources... [ 46%] source/rdkit.Chem.rdFingerprintGenerator reading sources... [ 47%] source/rdkit.Chem.rdForceFieldHelpers reading sources... [ 47%] source/rdkit.Chem.rdFreeSASA reading sources... [ 47%] source/rdkit.Chem.rdMMPA reading sources... [ 48%] source/rdkit.Chem.rdMolAlign reading sources... [ 48%] source/rdkit.Chem.rdMolCatalog reading sources... [ 48%] source/rdkit.Chem.rdMolChemicalFeatures reading sources... [ 49%] source/rdkit.Chem.rdMolDescriptors reading sources... [ 49%] source/rdkit.Chem.rdMolHash reading sources... [ 50%] source/rdkit.Chem.rdMolInterchange reading sources... [ 50%] source/rdkit.Chem.rdMolTransforms reading sources... [ 50%] source/rdkit.Chem.rdPartialCharges reading sources... [ 51%] source/rdkit.Chem.rdRGroupDecomposition reading sources... [ 51%] source/rdkit.Chem.rdReducedGraphs reading sources... [ 51%] source/rdkit.Chem.rdSLNParse reading sources... [ 52%] source/rdkit.Chem.rdShapeHelpers reading sources... [ 52%] source/rdkit.Chem.rdStructChecker reading sources... [ 52%] source/rdkit.Chem.rdSubstructLibrary reading sources... [ 53%] source/rdkit.Chem.rdchem reading sources... [ 53%] source/rdkit.Chem.rdfiltercatalog reading sources... [ 53%] source/rdkit.Chem.rdfragcatalog reading sources... [ 54%] source/rdkit.Chem.rdinchi reading sources... [ 54%] source/rdkit.Chem.rdmolfiles reading sources... [ 54%] source/rdkit.Chem.rdmolops reading sources... [ 55%] source/rdkit.Chem.rdqueries reading sources... [ 55%] source/rdkit.Chem.rdtrajectory reading sources... [ 55%] source/rdkit.DataManip reading sources... [ 56%] source/rdkit.DataManip.Metric reading sources... [ 56%] source/rdkit.DataStructs reading sources... [ 56%] source/rdkit.DataStructs.BitEnsemble reading sources... [ 57%] source/rdkit.DataStructs.BitEnsembleDb reading sources... [ 57%] source/rdkit.DataStructs.BitUtils reading sources... [ 57%] source/rdkit.DataStructs.HierarchyVis reading sources... [ 58%] source/rdkit.DataStructs.LazySignature reading sources... [ 58%] source/rdkit.DataStructs.TopNContainer reading sources... [ 58%] source/rdkit.DataStructs.VectCollection reading sources... [ 59%] source/rdkit.Dbase reading sources... [ 59%] source/rdkit.Dbase.DbConnection reading sources... [ 59%] source/rdkit.Dbase.DbInfo reading sources... [ 60%] source/rdkit.Dbase.DbModule reading sources... [ 60%] source/rdkit.Dbase.DbReport reading sources... [ 60%] source/rdkit.Dbase.DbResultSet reading sources... [ 61%] source/rdkit.Dbase.DbUtils reading sources... [ 61%] source/rdkit.Dbase.StorageUtils reading sources... [ 61%] source/rdkit.DistanceGeometry reading sources... [ 62%] source/rdkit.ForceField reading sources... [ 62%] source/rdkit.Geometry reading sources... [ 62%] source/rdkit.ML reading sources... [ 63%] source/rdkit.ML.AnalyzeComposite reading sources... [ 63%] source/rdkit.ML.BuildComposite reading sources... [ 63%] source/rdkit.ML.Cluster reading sources... [ 64%] source/rdkit.ML.Cluster.Butina reading sources... [ 64%] source/rdkit.ML.Cluster.ClusterUtils reading sources... [ 64%] source/rdkit.ML.Cluster.ClusterVis reading sources... [ 65%] source/rdkit.ML.Cluster.Clusters reading sources... [ 65%] source/rdkit.ML.Cluster.Murtagh reading sources... [ 65%] source/rdkit.ML.Cluster.Resemblance reading sources... [ 66%] source/rdkit.ML.Cluster.Standardize reading sources... [ 66%] source/rdkit.ML.Cluster.murtagh_test reading sources... [ 66%] source/rdkit.ML.Composite reading sources... [ 67%] source/rdkit.ML.Composite.AdjustComposite reading sources... [ 67%] source/rdkit.ML.Composite.BayesComposite reading sources... [ 67%] source/rdkit.ML.Composite.Composite reading sources... [ 68%] source/rdkit.ML.CompositeRun reading sources... [ 68%] source/rdkit.ML.Data reading sources... [ 68%] source/rdkit.ML.Data.DataUtils reading sources... [ 69%] source/rdkit.ML.Data.FindQuantBounds reading sources... [ 69%] source/rdkit.ML.Data.MLData reading sources... [ 69%] source/rdkit.ML.Data.Quantize reading sources... [ 70%] source/rdkit.ML.Data.SplitData reading sources... [ 70%] source/rdkit.ML.Data.Stats reading sources... [ 70%] source/rdkit.ML.Data.Transforms reading sources... [ 71%] source/rdkit.ML.DecTree reading sources... [ 71%] source/rdkit.ML.DecTree.BuildQuantTree reading sources... [ 71%] source/rdkit.ML.DecTree.BuildSigTree reading sources... [ 72%] source/rdkit.ML.DecTree.CrossValidate reading sources... [ 72%] source/rdkit.ML.DecTree.DecTree reading sources... [ 72%] source/rdkit.ML.DecTree.Forest reading sources... [ 73%] source/rdkit.ML.DecTree.ID3 reading sources... [ 73%] source/rdkit.ML.DecTree.PruneTree reading sources... [ 73%] source/rdkit.ML.DecTree.QuantTree reading sources... [ 74%] source/rdkit.ML.DecTree.SigTree reading sources... [ 74%] source/rdkit.ML.DecTree.Tree reading sources... [ 75%] source/rdkit.ML.DecTree.TreeUtils reading sources... [ 75%] source/rdkit.ML.DecTree.TreeVis reading sources... [ 75%] source/rdkit.ML.DecTree.randomtest reading sources... [ 76%] source/rdkit.ML.Descriptors reading sources... [ 76%] source/rdkit.ML.Descriptors.CompoundDescriptors reading sources... [ 76%] source/rdkit.ML.Descriptors.Descriptors reading sources... [ 77%] source/rdkit.ML.Descriptors.MoleculeDescriptors reading sources... [ 77%] source/rdkit.ML.Descriptors.Parser reading sources... [ 77%] source/rdkit.ML.EnrichPlot reading sources... [ 78%] source/rdkit.ML.GrowComposite reading sources... [ 78%] source/rdkit.ML.InfoTheory reading sources... [ 78%] source/rdkit.ML.InfoTheory.BitClusterer reading sources... [ 79%] source/rdkit.ML.InfoTheory.BitRank reading sources... [ 79%] source/rdkit.ML.InfoTheory.entropy reading sources... [ 79%] source/rdkit.ML.KNN reading sources... [ 80%] source/rdkit.ML.KNN.CrossValidate reading sources... [ 80%] source/rdkit.ML.KNN.DistFunctions reading sources... [ 80%] source/rdkit.ML.KNN.KNNClassificationModel reading sources... [ 81%] source/rdkit.ML.KNN.KNNModel reading sources... [ 81%] source/rdkit.ML.KNN.KNNRegressionModel reading sources... [ 81%] source/rdkit.ML.MLUtils reading sources... [ 82%] source/rdkit.ML.MLUtils.VoteImg reading sources... [ 82%] source/rdkit.ML.MatOps reading sources... [ 82%] source/rdkit.ML.ModelPackage reading sources... [ 83%] source/rdkit.ML.ModelPackage.PackageUtils reading sources... [ 83%] source/rdkit.ML.ModelPackage.Packager reading sources... [ 83%] source/rdkit.ML.NaiveBayes reading sources... [ 84%] source/rdkit.ML.NaiveBayes.ClassificationModel reading sources... [ 84%] source/rdkit.ML.NaiveBayes.CrossValidate reading sources... [ 84%] source/rdkit.ML.Neural reading sources... [ 85%] source/rdkit.ML.Neural.ActFuncs reading sources... [ 85%] source/rdkit.ML.Neural.CrossValidate reading sources... [ 85%] source/rdkit.ML.Neural.NetNode reading sources... [ 86%] source/rdkit.ML.Neural.Network reading sources... [ 86%] source/rdkit.ML.Neural.Trainers reading sources... [ 86%] source/rdkit.ML.SLT reading sources... [ 87%] source/rdkit.ML.SLT.Risk reading sources... [ 87%] source/rdkit.ML.Scoring reading sources... [ 87%] source/rdkit.ML.Scoring.Scoring reading sources... [ 88%] source/rdkit.ML.ScreenComposite reading sources... [ 88%] source/rdkit.ML.files reading sources... [ 88%] source/rdkit.Numerics reading sources... [ 89%] source/rdkit.RDConfig reading sources... [ 89%] source/rdkit.RDLogger reading sources... [ 89%] source/rdkit.RDPaths reading sources... [ 90%] source/rdkit.RDRandom reading sources... [ 90%] source/rdkit.SimDivFilters reading sources... [ 90%] source/rdkit.SimDivFilters.SimilarityPickers reading sources... [ 91%] source/rdkit.TestRunner reading sources... [ 91%] source/rdkit.VLib reading sources... [ 91%] source/rdkit.VLib.Filter reading sources... [ 92%] source/rdkit.VLib.Node reading sources... [ 92%] source/rdkit.VLib.NodeLib reading sources... [ 92%] source/rdkit.VLib.NodeLib.DbMolSupply reading sources... [ 93%] source/rdkit.VLib.NodeLib.DbPickleSupplier reading sources... [ 93%] source/rdkit.VLib.NodeLib.SDSupply reading sources... [ 93%] source/rdkit.VLib.NodeLib.SmartsMolFilter reading sources... [ 94%] source/rdkit.VLib.NodeLib.SmartsRemover reading sources... [ 94%] source/rdkit.VLib.NodeLib.SmilesDupeFilter reading sources... [ 94%] source/rdkit.VLib.NodeLib.SmilesOutput reading sources... [ 95%] source/rdkit.VLib.NodeLib.SmilesSupply reading sources... [ 95%] source/rdkit.VLib.NodeLib.demo reading sources... [ 95%] source/rdkit.VLib.Output reading sources... [ 96%] source/rdkit.VLib.Supply reading sources... [ 96%] source/rdkit.VLib.Transform reading sources... [ 96%] source/rdkit.six reading sources... [ 97%] source/rdkit.utils reading sources... [ 97%] source/rdkit.utils.cactvs reading sources... [ 97%] source/rdkit.utils.chemdraw reading sources... [ 98%] source/rdkit.utils.chemdraw_qax reading sources... [ 98%] source/rdkit.utils.chemutils reading sources... [ 98%] source/rdkit.utils.comhack reading sources... [ 99%] source/rdkit.utils.fileutils reading sources... [ 99%] source/rdkit.utils.listutils reading sources... [100%] source/rdkit.utils.spiral /usr/lib/python3/dist-packages/recommonmark/parser.py:280: UserWarning: Unsupported inline type Hardbreak warn("Unsupported inline type " + inline.t) /build/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2720: WARNING: Block quote ends without a blank line; unexpected unindent. /build/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2729: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.DSViewer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.aggCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.cairoCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.canvasbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.mplCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.qtCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.LazyGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.ScaffoldTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.testCombined' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst:2: WARNING: Title underline too short. rdkit.Chem.rdForceFieldHelpers module ================================= WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolDescriptors module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolInterchange module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst:2: WARNING: Title underline too short. rdkit.Chem.rdPartialCharges module ================================= WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst:2: WARNING: Title underline too short. rdkit.Chem.rdRGroupDecomposition module ================================= WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdStructChecker' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst:2: WARNING: Title underline too short. rdkit.Chem.rdSubstructLibrary module ================================= WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.HierarchyVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbReport' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.AnalyzeComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.BuildComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.murtagh_test' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.AdjustComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.BayesComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.CompositeRun' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildQuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildSigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Forest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.ID3' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.PruneTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.QuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.SigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Tree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.randomtest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.EnrichPlot' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.GrowComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.DistFunctions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNRegressionModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.PackageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.Packager' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.ClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.ActFuncs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.NetNode' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Network' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Trainers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ScreenComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.demo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'six' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw_qax' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.comhack' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: No module named 'rdkit' looking for now-outdated files... none found pickling environment... done checking consistency... /build/rdkit-201809.1+dfsg/Docs/Book/source/modules.rst: WARNING: document isn't included in any toctree done preparing documents... done writing output... [ 0%] BackwardsIncompatibleChanges writing output... [ 0%] Cartridge writing output... [ 1%] Cookbook writing output... [ 1%] GettingStartedInPython writing output... [ 1%] Install writing output... [ 2%] Overview writing output... [ 2%] RDKit_Book writing output... [ 2%] api-docs writing output... [ 3%] index writing output... [ 3%] source/modules writing output... [ 3%] source/rdkit writing output... [ 4%] source/rdkit.Avalon writing output... [ 4%] source/rdkit.Avalon.pyAvalonTools writing output... [ 4%] source/rdkit.Chem writing output... [ 5%] source/rdkit.Chem.AllChem writing output... [ 5%] source/rdkit.Chem.AtomPairs writing output... [ 5%] source/rdkit.Chem.AtomPairs.Pairs writing output... [ 6%] source/rdkit.Chem.AtomPairs.Sheridan writing output... [ 6%] source/rdkit.Chem.AtomPairs.Torsions writing output... [ 6%] source/rdkit.Chem.AtomPairs.Utils writing output... [ 7%] source/rdkit.Chem.BRICS writing output... [ 7%] source/rdkit.Chem.BuildFragmentCatalog writing output... [ 7%] source/rdkit.Chem.ChemUtils writing output... [ 8%] source/rdkit.Chem.ChemUtils.AlignDepict writing output... [ 8%] source/rdkit.Chem.ChemUtils.BulkTester writing output... [ 8%] source/rdkit.Chem.ChemUtils.DescriptorUtilities writing output... [ 9%] source/rdkit.Chem.ChemUtils.SDFToCSV writing output... [ 9%] source/rdkit.Chem.ChemUtils.TemplateExpand writing output... [ 9%] source/rdkit.Chem.ChemicalFeatures writing output... [ 10%] source/rdkit.Chem.ChemicalForceFields writing output... [ 10%] source/rdkit.Chem.Crippen writing output... [ 10%] source/rdkit.Chem.DSViewer writing output... [ 11%] source/rdkit.Chem.Descriptors writing output... [ 11%] source/rdkit.Chem.Descriptors3D writing output... [ 11%] source/rdkit.Chem.Draw writing output... [ 12%] source/rdkit.Chem.Draw.IPythonConsole writing output... [ 12%] source/rdkit.Chem.Draw.MolDrawing writing output... [ 12%] source/rdkit.Chem.Draw.SimilarityMaps writing output... [ 13%] source/rdkit.Chem.Draw.aggCanvas writing output... [ 13%] source/rdkit.Chem.Draw.cairoCanvas writing output... [ 13%] source/rdkit.Chem.Draw.canvasbase writing output... [ 14%] source/rdkit.Chem.Draw.mplCanvas writing output... [ 14%] source/rdkit.Chem.Draw.qtCanvas writing output... [ 14%] source/rdkit.Chem.Draw.rdMolDraw2D writing output... [ 15%] source/rdkit.Chem.EState writing output... [ 15%] source/rdkit.Chem.EState.AtomTypes writing output... [ 15%] source/rdkit.Chem.EState.EState writing output... [ 16%] source/rdkit.Chem.EState.EState_VSA writing output... [ 16%] source/rdkit.Chem.EState.Fingerprinter writing output... [ 16%] source/rdkit.Chem.EnumerateHeterocycles writing output... [ 17%] source/rdkit.Chem.EnumerateStereoisomers writing output... [ 17%] source/rdkit.Chem.FastSDMolSupplier writing output... [ 17%] source/rdkit.Chem.FeatFinderCLI writing output... [ 18%] source/rdkit.Chem.FeatMaps writing output... [ 18%] source/rdkit.Chem.FeatMaps.FeatMapParser writing output... [ 18%] source/rdkit.Chem.FeatMaps.FeatMapPoint writing output... [ 19%] source/rdkit.Chem.FeatMaps.FeatMapUtils writing output... [ 19%] source/rdkit.Chem.FeatMaps.FeatMaps writing output... [ 19%] source/rdkit.Chem.Features writing output... [ 20%] source/rdkit.Chem.Features.FeatDirUtilsRD writing output... [ 20%] source/rdkit.Chem.Features.ShowFeats writing output... [ 20%] source/rdkit.Chem.FilterCatalog writing output... [ 21%] source/rdkit.Chem.Fingerprints writing output... [ 21%] source/rdkit.Chem.Fingerprints.ClusterMols writing output... [ 21%] source/rdkit.Chem.Fingerprints.DbFpSupplier writing output... [ 22%] source/rdkit.Chem.Fingerprints.FingerprintMols writing output... [ 22%] source/rdkit.Chem.Fingerprints.MolSimilarity writing output... [ 22%] source/rdkit.Chem.Fingerprints.SimilarityScreener writing output... [ 23%] source/rdkit.Chem.Fraggle writing output... [ 23%] source/rdkit.Chem.Fraggle.FraggleSim writing output... [ 23%] source/rdkit.Chem.FragmentCatalog writing output... [ 24%] source/rdkit.Chem.FragmentMatcher writing output... [ 24%] source/rdkit.Chem.Fragments writing output... [ 25%] source/rdkit.Chem.FunctionalGroups writing output... [ 25%] source/rdkit.Chem.GraphDescriptors writing output... [ 25%] source/rdkit.Chem.Graphs writing output... [ 26%] source/rdkit.Chem.Lipinski writing output... [ 26%] source/rdkit.Chem.MACCSkeys writing output... [ 26%] source/rdkit.Chem.MCS writing output... [ 27%] source/rdkit.Chem.MolCatalog writing output... [ 27%] source/rdkit.Chem.MolDb writing output... [ 27%] source/rdkit.Chem.MolDb.FingerprintUtils writing output... [ 28%] source/rdkit.Chem.MolDb.Loader writing output... [ 28%] source/rdkit.Chem.MolDb.Loader_orig writing output... [ 28%] source/rdkit.Chem.MolDb.Loader_sa writing output... [ 29%] source/rdkit.Chem.MolKey writing output... [ 29%] source/rdkit.Chem.MolKey.InchiInfo writing output... [ 29%] source/rdkit.Chem.MolKey.MolKey writing output... [ 30%] source/rdkit.Chem.MolStandardize writing output... [ 30%] source/rdkit.Chem.MolStandardize.rdMolStandardize writing output... [ 30%] source/rdkit.Chem.MolSurf writing output... [ 31%] source/rdkit.Chem.PandasTools writing output... [ 31%] source/rdkit.Chem.PeriodicTable writing output... [ 31%] source/rdkit.Chem.Pharm2D writing output... [ 32%] source/rdkit.Chem.Pharm2D.Generate writing output... [ 32%] source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D writing output... [ 32%] source/rdkit.Chem.Pharm2D.LazyGenerator writing output... [ 33%] source/rdkit.Chem.Pharm2D.Matcher writing output... [ 33%] source/rdkit.Chem.Pharm2D.SigFactory writing output... [ 33%] source/rdkit.Chem.Pharm2D.Utils writing output... [ 34%] source/rdkit.Chem.Pharm3D writing output... [ 34%] source/rdkit.Chem.Pharm3D.EmbedLib writing output... [ 34%] source/rdkit.Chem.Pharm3D.ExcludedVolume writing output... [ 35%] source/rdkit.Chem.Pharm3D.Pharmacophore writing output... [ 35%] source/rdkit.Chem.PropertyMol writing output... [ 35%] source/rdkit.Chem.PyMol writing output... [ 36%] source/rdkit.Chem.QED writing output... [ 36%] source/rdkit.Chem.Randomize writing output... [ 36%] source/rdkit.Chem.Recap writing output... [ 37%] source/rdkit.Chem.ReducedGraphs writing output... [ 37%] source/rdkit.Chem.SATIS writing output... [ 37%] source/rdkit.Chem.SaltRemover writing output... [ 38%] source/rdkit.Chem.Scaffolds writing output... [ 38%] source/rdkit.Chem.Scaffolds.MurckoScaffold writing output... [ 38%] source/rdkit.Chem.Scaffolds.ScaffoldTree writing output... [ 39%] source/rdkit.Chem.ShowMols writing output... [ 39%] source/rdkit.Chem.SimpleEnum writing output... [ 39%] source/rdkit.Chem.SimpleEnum.Enumerator writing output... [ 40%] source/rdkit.Chem.Subshape writing output... [ 40%] source/rdkit.Chem.Subshape.BuilderUtils writing output... [ 40%] source/rdkit.Chem.Subshape.SubshapeAligner writing output... [ 41%] source/rdkit.Chem.Subshape.SubshapeBuilder writing output... [ 41%] source/rdkit.Chem.Subshape.SubshapeObjects writing output... [ 41%] source/rdkit.Chem.Subshape.testCombined writing output... [ 42%] source/rdkit.Chem.Suppliers writing output... [ 42%] source/rdkit.Chem.Suppliers.DbMolSupplier writing output... [ 42%] source/rdkit.Chem.Suppliers.MolSupplier writing output... [ 43%] source/rdkit.Chem.TemplateAlign writing output... [ 43%] source/rdkit.Chem.TorsionFingerprints writing output... [ 43%] source/rdkit.Chem.fmcs writing output... [ 44%] source/rdkit.Chem.fmcs.fmcs writing output... [ 44%] source/rdkit.Chem.inchi writing output... [ 44%] source/rdkit.Chem.rdChemReactions writing output... [ 45%] source/rdkit.Chem.rdChemicalFeatures writing output... [ 45%] source/rdkit.Chem.rdCoordGen writing output... [ 45%] source/rdkit.Chem.rdDepictor writing output... [ 46%] source/rdkit.Chem.rdDistGeom writing output... [ 46%] source/rdkit.Chem.rdFMCS writing output... [ 46%] source/rdkit.Chem.rdFingerprintGenerator writing output... [ 47%] source/rdkit.Chem.rdForceFieldHelpers writing output... [ 47%] source/rdkit.Chem.rdFreeSASA writing output... [ 47%] source/rdkit.Chem.rdMMPA writing output... [ 48%] source/rdkit.Chem.rdMolAlign writing output... [ 48%] source/rdkit.Chem.rdMolCatalog writing output... [ 48%] source/rdkit.Chem.rdMolChemicalFeatures writing output... [ 49%] source/rdkit.Chem.rdMolDescriptors writing output... [ 49%] source/rdkit.Chem.rdMolHash writing output... [ 50%] source/rdkit.Chem.rdMolInterchange writing output... [ 50%] source/rdkit.Chem.rdMolTransforms writing output... [ 50%] source/rdkit.Chem.rdPartialCharges writing output... [ 51%] source/rdkit.Chem.rdRGroupDecomposition writing output... [ 51%] source/rdkit.Chem.rdReducedGraphs writing output... [ 51%] source/rdkit.Chem.rdSLNParse writing output... [ 52%] source/rdkit.Chem.rdShapeHelpers writing output... [ 52%] source/rdkit.Chem.rdStructChecker writing output... [ 52%] source/rdkit.Chem.rdSubstructLibrary writing output... [ 53%] source/rdkit.Chem.rdchem writing output... [ 53%] source/rdkit.Chem.rdfiltercatalog writing output... [ 53%] source/rdkit.Chem.rdfragcatalog writing output... [ 54%] source/rdkit.Chem.rdinchi writing output... [ 54%] source/rdkit.Chem.rdmolfiles writing output... [ 54%] source/rdkit.Chem.rdmolops writing output... [ 55%] source/rdkit.Chem.rdqueries writing output... [ 55%] source/rdkit.Chem.rdtrajectory writing output... [ 55%] source/rdkit.DataManip writing output... [ 56%] source/rdkit.DataManip.Metric writing output... [ 56%] source/rdkit.DataStructs writing output... [ 56%] source/rdkit.DataStructs.BitEnsemble writing output... [ 57%] source/rdkit.DataStructs.BitEnsembleDb writing output... [ 57%] source/rdkit.DataStructs.BitUtils writing output... [ 57%] source/rdkit.DataStructs.HierarchyVis writing output... [ 58%] source/rdkit.DataStructs.LazySignature writing output... [ 58%] source/rdkit.DataStructs.TopNContainer writing output... [ 58%] source/rdkit.DataStructs.VectCollection writing output... [ 59%] source/rdkit.Dbase writing output... [ 59%] source/rdkit.Dbase.DbConnection writing output... [ 59%] source/rdkit.Dbase.DbInfo writing output... [ 60%] source/rdkit.Dbase.DbModule writing output... [ 60%] source/rdkit.Dbase.DbReport writing output... [ 60%] source/rdkit.Dbase.DbResultSet writing output... [ 61%] source/rdkit.Dbase.DbUtils writing output... [ 61%] source/rdkit.Dbase.StorageUtils writing output... [ 61%] source/rdkit.DistanceGeometry writing output... [ 62%] source/rdkit.ForceField writing output... [ 62%] source/rdkit.Geometry writing output... [ 62%] source/rdkit.ML writing output... [ 63%] source/rdkit.ML.AnalyzeComposite writing output... [ 63%] source/rdkit.ML.BuildComposite writing output... [ 63%] source/rdkit.ML.Cluster writing output... [ 64%] source/rdkit.ML.Cluster.Butina writing output... [ 64%] source/rdkit.ML.Cluster.ClusterUtils writing output... [ 64%] source/rdkit.ML.Cluster.ClusterVis writing output... [ 65%] source/rdkit.ML.Cluster.Clusters writing output... [ 65%] source/rdkit.ML.Cluster.Murtagh writing output... [ 65%] source/rdkit.ML.Cluster.Resemblance writing output... [ 66%] source/rdkit.ML.Cluster.Standardize writing output... [ 66%] source/rdkit.ML.Cluster.murtagh_test writing output... [ 66%] source/rdkit.ML.Composite writing output... [ 67%] source/rdkit.ML.Composite.AdjustComposite writing output... [ 67%] source/rdkit.ML.Composite.BayesComposite writing output... [ 67%] source/rdkit.ML.Composite.Composite writing output... [ 68%] source/rdkit.ML.CompositeRun writing output... [ 68%] source/rdkit.ML.Data writing output... [ 68%] source/rdkit.ML.Data.DataUtils writing output... [ 69%] source/rdkit.ML.Data.FindQuantBounds writing output... [ 69%] source/rdkit.ML.Data.MLData writing output... [ 69%] source/rdkit.ML.Data.Quantize writing output... [ 70%] source/rdkit.ML.Data.SplitData writing output... [ 70%] source/rdkit.ML.Data.Stats writing output... [ 70%] source/rdkit.ML.Data.Transforms writing output... [ 71%] source/rdkit.ML.DecTree writing output... [ 71%] source/rdkit.ML.DecTree.BuildQuantTree writing output... [ 71%] source/rdkit.ML.DecTree.BuildSigTree writing output... [ 72%] source/rdkit.ML.DecTree.CrossValidate writing output... [ 72%] source/rdkit.ML.DecTree.DecTree writing output... [ 72%] source/rdkit.ML.DecTree.Forest writing output... [ 73%] source/rdkit.ML.DecTree.ID3 writing output... [ 73%] source/rdkit.ML.DecTree.PruneTree writing output... [ 73%] source/rdkit.ML.DecTree.QuantTree writing output... [ 74%] source/rdkit.ML.DecTree.SigTree writing output... [ 74%] source/rdkit.ML.DecTree.Tree writing output... [ 75%] source/rdkit.ML.DecTree.TreeUtils writing output... [ 75%] source/rdkit.ML.DecTree.TreeVis writing output... [ 75%] source/rdkit.ML.DecTree.randomtest writing output... [ 76%] source/rdkit.ML.Descriptors writing output... [ 76%] source/rdkit.ML.Descriptors.CompoundDescriptors writing output... [ 76%] source/rdkit.ML.Descriptors.Descriptors writing output... [ 77%] source/rdkit.ML.Descriptors.MoleculeDescriptors writing output... [ 77%] source/rdkit.ML.Descriptors.Parser writing output... [ 77%] source/rdkit.ML.EnrichPlot writing output... [ 78%] source/rdkit.ML.GrowComposite writing output... [ 78%] source/rdkit.ML.InfoTheory writing output... [ 78%] source/rdkit.ML.InfoTheory.BitClusterer writing output... [ 79%] source/rdkit.ML.InfoTheory.BitRank writing output... [ 79%] source/rdkit.ML.InfoTheory.entropy writing output... [ 79%] source/rdkit.ML.KNN writing output... [ 80%] source/rdkit.ML.KNN.CrossValidate writing output... [ 80%] source/rdkit.ML.KNN.DistFunctions writing output... [ 80%] source/rdkit.ML.KNN.KNNClassificationModel writing output... [ 81%] source/rdkit.ML.KNN.KNNModel writing output... [ 81%] source/rdkit.ML.KNN.KNNRegressionModel writing output... [ 81%] source/rdkit.ML.MLUtils writing output... [ 82%] source/rdkit.ML.MLUtils.VoteImg writing output... [ 82%] source/rdkit.ML.MatOps writing output... [ 82%] source/rdkit.ML.ModelPackage writing output... [ 83%] source/rdkit.ML.ModelPackage.PackageUtils writing output... [ 83%] source/rdkit.ML.ModelPackage.Packager writing output... [ 83%] source/rdkit.ML.NaiveBayes writing output... [ 84%] source/rdkit.ML.NaiveBayes.ClassificationModel writing output... [ 84%] source/rdkit.ML.NaiveBayes.CrossValidate writing output... [ 84%] source/rdkit.ML.Neural writing output... [ 85%] source/rdkit.ML.Neural.ActFuncs writing output... [ 85%] source/rdkit.ML.Neural.CrossValidate writing output... [ 85%] source/rdkit.ML.Neural.NetNode writing output... [ 86%] source/rdkit.ML.Neural.Network writing output... [ 86%] source/rdkit.ML.Neural.Trainers writing output... [ 86%] source/rdkit.ML.SLT writing output... [ 87%] source/rdkit.ML.SLT.Risk writing output... [ 87%] source/rdkit.ML.Scoring writing output... [ 87%] source/rdkit.ML.Scoring.Scoring writing output... [ 88%] source/rdkit.ML.ScreenComposite writing output... [ 88%] source/rdkit.ML.files writing output... [ 88%] source/rdkit.Numerics writing output... [ 89%] source/rdkit.RDConfig writing output... [ 89%] source/rdkit.RDLogger writing output... [ 89%] source/rdkit.RDPaths writing output... [ 90%] source/rdkit.RDRandom writing output... [ 90%] source/rdkit.SimDivFilters writing output... [ 90%] source/rdkit.SimDivFilters.SimilarityPickers writing output... [ 91%] source/rdkit.TestRunner writing output... [ 91%] source/rdkit.VLib writing output... [ 91%] source/rdkit.VLib.Filter writing output... [ 92%] source/rdkit.VLib.Node writing output... [ 92%] source/rdkit.VLib.NodeLib writing output... [ 92%] source/rdkit.VLib.NodeLib.DbMolSupply writing output... [ 93%] source/rdkit.VLib.NodeLib.DbPickleSupplier writing output... [ 93%] source/rdkit.VLib.NodeLib.SDSupply writing output... [ 93%] source/rdkit.VLib.NodeLib.SmartsMolFilter writing output... [ 94%] source/rdkit.VLib.NodeLib.SmartsRemover writing output... [ 94%] source/rdkit.VLib.NodeLib.SmilesDupeFilter writing output... [ 94%] source/rdkit.VLib.NodeLib.SmilesOutput writing output... [ 95%] source/rdkit.VLib.NodeLib.SmilesSupply writing output... [ 95%] source/rdkit.VLib.NodeLib.demo writing output... [ 95%] source/rdkit.VLib.Output writing output... [ 96%] source/rdkit.VLib.Supply writing output... [ 96%] source/rdkit.VLib.Transform writing output... [ 96%] source/rdkit.six writing output... [ 97%] source/rdkit.utils writing output... [ 97%] source/rdkit.utils.cactvs writing output... [ 97%] source/rdkit.utils.chemdraw writing output... [ 98%] source/rdkit.utils.chemdraw_qax writing output... [ 98%] source/rdkit.utils.chemutils writing output... [ 98%] source/rdkit.utils.comhack writing output... [ 99%] source/rdkit.utils.fileutils writing output... [ 99%] source/rdkit.utils.listutils writing output... [100%] source/rdkit.utils.spiral generating indices... genindex writing additional pages... search copying images... [ 3%] images/indole1.png copying images... [ 7%] images/similarity_map_rf.png copying images... [ 10%] images/picture_1.png copying images... [ 14%] images/picture_0.png copying images... [ 17%] images/picture_3.png copying images... [ 21%] images/picture_2.png copying images... [ 25%] images/picture_4.png copying images... [ 28%] images/cdk2_mol1.png copying images... [ 32%] images/cdk2_mol2.png copying images... [ 35%] images/cdk2_molgrid.png copying images... [ 39%] images/cdk2_molgrid_aligned.png copying images... [ 42%] images/mfp2_bit872.svg copying images... [ 46%] images/rdk_bit1553.svg copying images... [ 50%] images/rdk_bit1553_2.svg copying images... [ 53%] images/similarity_map_fp1.png copying images... [ 57%] images/similarity_map_fp2.png copying images... [ 60%] images/similarity_map_fp3.png copying images... [ 64%] images/similarity_map_charges.png copying images... [ 67%] images/similarity_map_crippen.png copying images... [ 71%] images/picture_6.png copying images... [ 75%] images/picture_5.png copying images... [ 78%] images/picture_9.png copying images... [ 82%] images/picture_8.png copying images... [ 85%] images/picture_7.png copying images... [ 89%] images/picture_10.png copying images... [ 92%] images/picture_12.png copying images... [ 96%] images/picture_11.png copying images... [100%] images/picture_10.jpg copying static files... WARNING: html_static_path entry '/build/rdkit-201809.1+dfsg/Docs/Book/_static' does not exist done copying extra files... done dumping search index in English (code: en) ... done dumping object inventory... done build succeeded, 297 warnings. The HTML pages are in _build/html. Build finished. The HTML pages are in _build/html. make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/Docs/Book' (cd /build/rdkit-201809.1+dfsg/Docs/Book; RDBASE=/build/rdkit-201809.1+dfsg /usr/bin/make latexpdf) make[2]: Entering directory '/build/rdkit-201809.1+dfsg/Docs/Book' mkdir -p _build/html/cppapi cp -r /build/rdkit-201809.1+dfsg/Code/docs/* _build/html/cppapi sphinx-build -b latex -d _build/doctrees . _build/latex Running Sphinx v1.8.4 making output directory... loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [latex]: all documents updating environment: 296 added, 0 changed, 0 removed reading sources... [ 0%] BackwardsIncompatibleChanges reading sources... [ 0%] Cartridge reading sources... [ 1%] Cookbook reading sources... [ 1%] GettingStartedInPython reading sources... [ 1%] Install reading sources... [ 2%] Overview reading sources... [ 2%] RDKit_Book reading sources... [ 2%] api-docs reading sources... [ 3%] index reading sources... [ 3%] source/modules reading sources... [ 3%] source/rdkit reading sources... [ 4%] source/rdkit.Avalon reading sources... [ 4%] source/rdkit.Avalon.pyAvalonTools reading sources... [ 4%] source/rdkit.Chem reading sources... [ 5%] source/rdkit.Chem.AllChem reading sources... [ 5%] source/rdkit.Chem.AtomPairs reading sources... [ 5%] source/rdkit.Chem.AtomPairs.Pairs reading sources... [ 6%] source/rdkit.Chem.AtomPairs.Sheridan reading sources... [ 6%] source/rdkit.Chem.AtomPairs.Torsions reading sources... [ 6%] source/rdkit.Chem.AtomPairs.Utils reading sources... [ 7%] source/rdkit.Chem.BRICS reading sources... [ 7%] source/rdkit.Chem.BuildFragmentCatalog reading sources... [ 7%] source/rdkit.Chem.ChemUtils reading sources... [ 8%] source/rdkit.Chem.ChemUtils.AlignDepict reading sources... [ 8%] source/rdkit.Chem.ChemUtils.BulkTester reading sources... [ 8%] source/rdkit.Chem.ChemUtils.DescriptorUtilities reading sources... [ 9%] source/rdkit.Chem.ChemUtils.SDFToCSV reading sources... [ 9%] source/rdkit.Chem.ChemUtils.TemplateExpand reading sources... [ 9%] source/rdkit.Chem.ChemicalFeatures reading sources... [ 10%] source/rdkit.Chem.ChemicalForceFields reading sources... [ 10%] source/rdkit.Chem.Crippen reading sources... [ 10%] source/rdkit.Chem.DSViewer reading sources... [ 11%] source/rdkit.Chem.Descriptors reading sources... [ 11%] source/rdkit.Chem.Descriptors3D reading sources... [ 11%] source/rdkit.Chem.Draw reading sources... [ 12%] source/rdkit.Chem.Draw.IPythonConsole reading sources... [ 12%] source/rdkit.Chem.Draw.MolDrawing reading sources... [ 12%] source/rdkit.Chem.Draw.SimilarityMaps reading sources... [ 13%] source/rdkit.Chem.Draw.aggCanvas reading sources... [ 13%] source/rdkit.Chem.Draw.cairoCanvas reading sources... [ 13%] source/rdkit.Chem.Draw.canvasbase reading sources... [ 14%] source/rdkit.Chem.Draw.mplCanvas reading sources... [ 14%] source/rdkit.Chem.Draw.qtCanvas reading sources... [ 14%] source/rdkit.Chem.Draw.rdMolDraw2D reading sources... [ 15%] source/rdkit.Chem.EState reading sources... [ 15%] source/rdkit.Chem.EState.AtomTypes reading sources... [ 15%] source/rdkit.Chem.EState.EState reading sources... [ 16%] source/rdkit.Chem.EState.EState_VSA reading sources... [ 16%] source/rdkit.Chem.EState.Fingerprinter reading sources... [ 16%] source/rdkit.Chem.EnumerateHeterocycles reading sources... [ 17%] source/rdkit.Chem.EnumerateStereoisomers reading sources... [ 17%] source/rdkit.Chem.FastSDMolSupplier reading sources... [ 17%] source/rdkit.Chem.FeatFinderCLI reading sources... [ 18%] source/rdkit.Chem.FeatMaps reading sources... [ 18%] source/rdkit.Chem.FeatMaps.FeatMapParser reading sources... [ 18%] source/rdkit.Chem.FeatMaps.FeatMapPoint reading sources... [ 19%] source/rdkit.Chem.FeatMaps.FeatMapUtils reading sources... [ 19%] source/rdkit.Chem.FeatMaps.FeatMaps reading sources... [ 19%] source/rdkit.Chem.Features reading sources... [ 20%] source/rdkit.Chem.Features.FeatDirUtilsRD reading sources... [ 20%] source/rdkit.Chem.Features.ShowFeats reading sources... [ 20%] source/rdkit.Chem.FilterCatalog reading sources... [ 21%] source/rdkit.Chem.Fingerprints reading sources... [ 21%] source/rdkit.Chem.Fingerprints.ClusterMols reading sources... [ 21%] source/rdkit.Chem.Fingerprints.DbFpSupplier reading sources... [ 22%] source/rdkit.Chem.Fingerprints.FingerprintMols reading sources... [ 22%] source/rdkit.Chem.Fingerprints.MolSimilarity reading sources... [ 22%] source/rdkit.Chem.Fingerprints.SimilarityScreener reading sources... [ 23%] source/rdkit.Chem.Fraggle reading sources... [ 23%] source/rdkit.Chem.Fraggle.FraggleSim reading sources... [ 23%] source/rdkit.Chem.FragmentCatalog reading sources... [ 24%] source/rdkit.Chem.FragmentMatcher reading sources... [ 24%] source/rdkit.Chem.Fragments reading sources... [ 25%] source/rdkit.Chem.FunctionalGroups reading sources... [ 25%] source/rdkit.Chem.GraphDescriptors reading sources... [ 25%] source/rdkit.Chem.Graphs reading sources... [ 26%] source/rdkit.Chem.Lipinski reading sources... [ 26%] source/rdkit.Chem.MACCSkeys reading sources... [ 26%] source/rdkit.Chem.MCS reading sources... [ 27%] source/rdkit.Chem.MolCatalog reading sources... [ 27%] source/rdkit.Chem.MolDb reading sources... [ 27%] source/rdkit.Chem.MolDb.FingerprintUtils reading sources... [ 28%] source/rdkit.Chem.MolDb.Loader reading sources... [ 28%] source/rdkit.Chem.MolDb.Loader_orig reading sources... [ 28%] source/rdkit.Chem.MolDb.Loader_sa reading sources... [ 29%] source/rdkit.Chem.MolKey reading sources... [ 29%] source/rdkit.Chem.MolKey.InchiInfo reading sources... [ 29%] source/rdkit.Chem.MolKey.MolKey reading sources... [ 30%] source/rdkit.Chem.MolStandardize reading sources... [ 30%] source/rdkit.Chem.MolStandardize.rdMolStandardize reading sources... [ 30%] source/rdkit.Chem.MolSurf reading sources... [ 31%] source/rdkit.Chem.PandasTools reading sources... [ 31%] source/rdkit.Chem.PeriodicTable reading sources... [ 31%] source/rdkit.Chem.Pharm2D reading sources... [ 32%] source/rdkit.Chem.Pharm2D.Generate reading sources... [ 32%] source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D reading sources... [ 32%] source/rdkit.Chem.Pharm2D.LazyGenerator reading sources... [ 33%] source/rdkit.Chem.Pharm2D.Matcher reading sources... [ 33%] source/rdkit.Chem.Pharm2D.SigFactory reading sources... [ 33%] source/rdkit.Chem.Pharm2D.Utils reading sources... [ 34%] source/rdkit.Chem.Pharm3D reading sources... [ 34%] source/rdkit.Chem.Pharm3D.EmbedLib reading sources... [ 34%] source/rdkit.Chem.Pharm3D.ExcludedVolume reading sources... [ 35%] source/rdkit.Chem.Pharm3D.Pharmacophore reading sources... [ 35%] source/rdkit.Chem.PropertyMol reading sources... [ 35%] source/rdkit.Chem.PyMol reading sources... [ 36%] source/rdkit.Chem.QED reading sources... [ 36%] source/rdkit.Chem.Randomize reading sources... [ 36%] source/rdkit.Chem.Recap reading sources... [ 37%] source/rdkit.Chem.ReducedGraphs reading sources... [ 37%] source/rdkit.Chem.SATIS reading sources... [ 37%] source/rdkit.Chem.SaltRemover reading sources... [ 38%] source/rdkit.Chem.Scaffolds reading sources... [ 38%] source/rdkit.Chem.Scaffolds.MurckoScaffold reading sources... [ 38%] source/rdkit.Chem.Scaffolds.ScaffoldTree reading sources... [ 39%] source/rdkit.Chem.ShowMols reading sources... [ 39%] source/rdkit.Chem.SimpleEnum reading sources... [ 39%] source/rdkit.Chem.SimpleEnum.Enumerator reading sources... [ 40%] source/rdkit.Chem.Subshape reading sources... [ 40%] source/rdkit.Chem.Subshape.BuilderUtils reading sources... [ 40%] source/rdkit.Chem.Subshape.SubshapeAligner reading sources... [ 41%] source/rdkit.Chem.Subshape.SubshapeBuilder reading sources... [ 41%] source/rdkit.Chem.Subshape.SubshapeObjects reading sources... [ 41%] source/rdkit.Chem.Subshape.testCombined reading sources... [ 42%] source/rdkit.Chem.Suppliers reading sources... [ 42%] source/rdkit.Chem.Suppliers.DbMolSupplier reading sources... [ 42%] source/rdkit.Chem.Suppliers.MolSupplier reading sources... [ 43%] source/rdkit.Chem.TemplateAlign reading sources... [ 43%] source/rdkit.Chem.TorsionFingerprints reading sources... [ 43%] source/rdkit.Chem.fmcs reading sources... [ 44%] source/rdkit.Chem.fmcs.fmcs reading sources... [ 44%] source/rdkit.Chem.inchi reading sources... [ 44%] source/rdkit.Chem.rdChemReactions reading sources... [ 45%] source/rdkit.Chem.rdChemicalFeatures reading sources... [ 45%] source/rdkit.Chem.rdCoordGen reading sources... [ 45%] source/rdkit.Chem.rdDepictor reading sources... [ 46%] source/rdkit.Chem.rdDistGeom reading sources... [ 46%] source/rdkit.Chem.rdFMCS reading sources... [ 46%] source/rdkit.Chem.rdFingerprintGenerator reading sources... [ 47%] source/rdkit.Chem.rdForceFieldHelpers reading sources... [ 47%] source/rdkit.Chem.rdFreeSASA reading sources... [ 47%] source/rdkit.Chem.rdMMPA reading sources... [ 48%] source/rdkit.Chem.rdMolAlign reading sources... [ 48%] source/rdkit.Chem.rdMolCatalog reading sources... [ 48%] source/rdkit.Chem.rdMolChemicalFeatures reading sources... [ 49%] source/rdkit.Chem.rdMolDescriptors reading sources... [ 49%] source/rdkit.Chem.rdMolHash reading sources... [ 50%] source/rdkit.Chem.rdMolInterchange reading sources... [ 50%] source/rdkit.Chem.rdMolTransforms reading sources... [ 50%] source/rdkit.Chem.rdPartialCharges reading sources... [ 51%] source/rdkit.Chem.rdRGroupDecomposition reading sources... [ 51%] source/rdkit.Chem.rdReducedGraphs reading sources... [ 51%] source/rdkit.Chem.rdSLNParse reading sources... [ 52%] source/rdkit.Chem.rdShapeHelpers reading sources... [ 52%] source/rdkit.Chem.rdStructChecker reading sources... [ 52%] source/rdkit.Chem.rdSubstructLibrary reading sources... [ 53%] source/rdkit.Chem.rdchem reading sources... [ 53%] source/rdkit.Chem.rdfiltercatalog reading sources... [ 53%] source/rdkit.Chem.rdfragcatalog reading sources... [ 54%] source/rdkit.Chem.rdinchi reading sources... [ 54%] source/rdkit.Chem.rdmolfiles reading sources... [ 54%] source/rdkit.Chem.rdmolops reading sources... [ 55%] source/rdkit.Chem.rdqueries reading sources... [ 55%] source/rdkit.Chem.rdtrajectory reading sources... [ 55%] source/rdkit.DataManip reading sources... [ 56%] source/rdkit.DataManip.Metric reading sources... [ 56%] source/rdkit.DataStructs reading sources... [ 56%] source/rdkit.DataStructs.BitEnsemble reading sources... [ 57%] source/rdkit.DataStructs.BitEnsembleDb reading sources... [ 57%] source/rdkit.DataStructs.BitUtils reading sources... [ 57%] source/rdkit.DataStructs.HierarchyVis reading sources... [ 58%] source/rdkit.DataStructs.LazySignature reading sources... [ 58%] source/rdkit.DataStructs.TopNContainer reading sources... [ 58%] source/rdkit.DataStructs.VectCollection reading sources... [ 59%] source/rdkit.Dbase reading sources... [ 59%] source/rdkit.Dbase.DbConnection reading sources... [ 59%] source/rdkit.Dbase.DbInfo reading sources... [ 60%] source/rdkit.Dbase.DbModule reading sources... [ 60%] source/rdkit.Dbase.DbReport reading sources... [ 60%] source/rdkit.Dbase.DbResultSet reading sources... [ 61%] source/rdkit.Dbase.DbUtils reading sources... [ 61%] source/rdkit.Dbase.StorageUtils reading sources... [ 61%] source/rdkit.DistanceGeometry reading sources... [ 62%] source/rdkit.ForceField reading sources... [ 62%] source/rdkit.Geometry reading sources... [ 62%] source/rdkit.ML reading sources... [ 63%] source/rdkit.ML.AnalyzeComposite reading sources... [ 63%] source/rdkit.ML.BuildComposite reading sources... [ 63%] source/rdkit.ML.Cluster reading sources... [ 64%] source/rdkit.ML.Cluster.Butina reading sources... [ 64%] source/rdkit.ML.Cluster.ClusterUtils reading sources... [ 64%] source/rdkit.ML.Cluster.ClusterVis reading sources... [ 65%] source/rdkit.ML.Cluster.Clusters reading sources... [ 65%] source/rdkit.ML.Cluster.Murtagh reading sources... [ 65%] source/rdkit.ML.Cluster.Resemblance reading sources... [ 66%] source/rdkit.ML.Cluster.Standardize reading sources... [ 66%] source/rdkit.ML.Cluster.murtagh_test reading sources... [ 66%] source/rdkit.ML.Composite reading sources... [ 67%] source/rdkit.ML.Composite.AdjustComposite reading sources... [ 67%] source/rdkit.ML.Composite.BayesComposite reading sources... [ 67%] source/rdkit.ML.Composite.Composite reading sources... [ 68%] source/rdkit.ML.CompositeRun reading sources... [ 68%] source/rdkit.ML.Data reading sources... [ 68%] source/rdkit.ML.Data.DataUtils reading sources... [ 69%] source/rdkit.ML.Data.FindQuantBounds reading sources... [ 69%] source/rdkit.ML.Data.MLData reading sources... [ 69%] source/rdkit.ML.Data.Quantize reading sources... [ 70%] source/rdkit.ML.Data.SplitData reading sources... [ 70%] source/rdkit.ML.Data.Stats reading sources... [ 70%] source/rdkit.ML.Data.Transforms reading sources... [ 71%] source/rdkit.ML.DecTree reading sources... [ 71%] source/rdkit.ML.DecTree.BuildQuantTree reading sources... [ 71%] source/rdkit.ML.DecTree.BuildSigTree reading sources... [ 72%] source/rdkit.ML.DecTree.CrossValidate reading sources... [ 72%] source/rdkit.ML.DecTree.DecTree reading sources... [ 72%] source/rdkit.ML.DecTree.Forest reading sources... [ 73%] source/rdkit.ML.DecTree.ID3 reading sources... [ 73%] source/rdkit.ML.DecTree.PruneTree reading sources... [ 73%] source/rdkit.ML.DecTree.QuantTree reading sources... [ 74%] source/rdkit.ML.DecTree.SigTree reading sources... [ 74%] source/rdkit.ML.DecTree.Tree reading sources... [ 75%] source/rdkit.ML.DecTree.TreeUtils reading sources... [ 75%] source/rdkit.ML.DecTree.TreeVis reading sources... [ 75%] source/rdkit.ML.DecTree.randomtest reading sources... [ 76%] source/rdkit.ML.Descriptors reading sources... [ 76%] source/rdkit.ML.Descriptors.CompoundDescriptors reading sources... [ 76%] source/rdkit.ML.Descriptors.Descriptors reading sources... [ 77%] source/rdkit.ML.Descriptors.MoleculeDescriptors reading sources... [ 77%] source/rdkit.ML.Descriptors.Parser reading sources... [ 77%] source/rdkit.ML.EnrichPlot reading sources... [ 78%] source/rdkit.ML.GrowComposite reading sources... [ 78%] source/rdkit.ML.InfoTheory reading sources... [ 78%] source/rdkit.ML.InfoTheory.BitClusterer reading sources... [ 79%] source/rdkit.ML.InfoTheory.BitRank reading sources... [ 79%] source/rdkit.ML.InfoTheory.entropy reading sources... [ 79%] source/rdkit.ML.KNN reading sources... [ 80%] source/rdkit.ML.KNN.CrossValidate reading sources... [ 80%] source/rdkit.ML.KNN.DistFunctions reading sources... [ 80%] source/rdkit.ML.KNN.KNNClassificationModel reading sources... [ 81%] source/rdkit.ML.KNN.KNNModel reading sources... [ 81%] source/rdkit.ML.KNN.KNNRegressionModel reading sources... [ 81%] source/rdkit.ML.MLUtils reading sources... [ 82%] source/rdkit.ML.MLUtils.VoteImg reading sources... [ 82%] source/rdkit.ML.MatOps reading sources... [ 82%] source/rdkit.ML.ModelPackage reading sources... [ 83%] source/rdkit.ML.ModelPackage.PackageUtils reading sources... [ 83%] source/rdkit.ML.ModelPackage.Packager reading sources... [ 83%] source/rdkit.ML.NaiveBayes reading sources... [ 84%] source/rdkit.ML.NaiveBayes.ClassificationModel reading sources... [ 84%] source/rdkit.ML.NaiveBayes.CrossValidate reading sources... [ 84%] source/rdkit.ML.Neural reading sources... [ 85%] source/rdkit.ML.Neural.ActFuncs reading sources... [ 85%] source/rdkit.ML.Neural.CrossValidate reading sources... [ 85%] source/rdkit.ML.Neural.NetNode reading sources... [ 86%] source/rdkit.ML.Neural.Network reading sources... [ 86%] source/rdkit.ML.Neural.Trainers reading sources... [ 86%] source/rdkit.ML.SLT reading sources... [ 87%] source/rdkit.ML.SLT.Risk reading sources... [ 87%] source/rdkit.ML.Scoring reading sources... [ 87%] source/rdkit.ML.Scoring.Scoring reading sources... [ 88%] source/rdkit.ML.ScreenComposite reading sources... [ 88%] source/rdkit.ML.files reading sources... [ 88%] source/rdkit.Numerics reading sources... [ 89%] source/rdkit.RDConfig reading sources... [ 89%] source/rdkit.RDLogger reading sources... [ 89%] source/rdkit.RDPaths reading sources... [ 90%] source/rdkit.RDRandom reading sources... [ 90%] source/rdkit.SimDivFilters reading sources... [ 90%] source/rdkit.SimDivFilters.SimilarityPickers reading sources... [ 91%] source/rdkit.TestRunner reading sources... [ 91%] source/rdkit.VLib reading sources... [ 91%] source/rdkit.VLib.Filter reading sources... [ 92%] source/rdkit.VLib.Node reading sources... [ 92%] source/rdkit.VLib.NodeLib reading sources... [ 92%] source/rdkit.VLib.NodeLib.DbMolSupply reading sources... [ 93%] source/rdkit.VLib.NodeLib.DbPickleSupplier reading sources... [ 93%] source/rdkit.VLib.NodeLib.SDSupply reading sources... [ 93%] source/rdkit.VLib.NodeLib.SmartsMolFilter reading sources... [ 94%] source/rdkit.VLib.NodeLib.SmartsRemover reading sources... [ 94%] source/rdkit.VLib.NodeLib.SmilesDupeFilter reading sources... [ 94%] source/rdkit.VLib.NodeLib.SmilesOutput reading sources... [ 95%] source/rdkit.VLib.NodeLib.SmilesSupply reading sources... [ 95%] source/rdkit.VLib.NodeLib.demo reading sources... [ 95%] source/rdkit.VLib.Output reading sources... [ 96%] source/rdkit.VLib.Supply reading sources... [ 96%] source/rdkit.VLib.Transform reading sources... [ 96%] source/rdkit.six reading sources... [ 97%] source/rdkit.utils reading sources... [ 97%] source/rdkit.utils.cactvs reading sources... [ 97%] source/rdkit.utils.chemdraw reading sources... [ 98%] source/rdkit.utils.chemdraw_qax reading sources... [ 98%] source/rdkit.utils.chemutils reading sources... [ 98%] source/rdkit.utils.comhack reading sources... [ 99%] source/rdkit.utils.fileutils reading sources... [ 99%] source/rdkit.utils.listutils reading sources... [100%] source/rdkit.utils.spiral /usr/lib/python3/dist-packages/recommonmark/parser.py:280: UserWarning: Unsupported inline type Hardbreak warn("Unsupported inline type " + inline.t) /build/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2720: WARNING: Block quote ends without a blank line; unexpected unindent. /build/rdkit-201809.1+dfsg/Docs/Book/GettingStartedInPython.rst:2729: WARNING: Unexpected indentation. WARNING: autodoc: failed to import module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Avalon.pyAvalonTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AllChem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Pairs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Sheridan' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Torsions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.AtomPairs.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BRICS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.BuildFragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.AlignDepict' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.BulkTester' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.DescriptorUtilities' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.SDFToCSV' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemUtils.TemplateExpand' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ChemicalForceFields' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Crippen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.DSViewer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Descriptors3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.IPythonConsole' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.MolDrawing' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.SimilarityMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.aggCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.cairoCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.canvasbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.mplCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.qtCanvas' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Draw.rdMolDraw2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.AtomTypes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.EState_VSA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EState.Fingerprinter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateHeterocycles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.EnumerateStereoisomers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FastSDMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatFinderCLI' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapParser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapPoint' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMapUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FeatMaps.FeatMaps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.FeatDirUtilsRD' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Features.ShowFeats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FilterCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.ClusterMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.DbFpSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.FingerprintMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.MolSimilarity' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fingerprints.SimilarityScreener' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fraggle.FraggleSim' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FragmentMatcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Fragments' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.FunctionalGroups' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.GraphDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Graphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Lipinski' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MACCSkeys' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.FingerprintUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_orig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolDb.Loader_sa' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.InchiInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolKey.MolKey' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolStandardize.rdMolStandardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.MolSurf' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PandasTools' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PeriodicTable' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Generate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Gobbi_Pharm2D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.LazyGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Matcher' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.SigFactory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm2D.Utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.EmbedLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.ExcludedVolume' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Pharm3D.Pharmacophore' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PropertyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.PyMol' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.QED' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Randomize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Recap' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SATIS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SaltRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.MurckoScaffold' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Scaffolds.ScaffoldTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.ShowMols' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.SimpleEnum.Enumerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.BuilderUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeAligner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeBuilder' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.SubshapeObjects' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Subshape.testCombined' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.DbMolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.Suppliers.MolSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TemplateAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.TorsionFingerprints' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.fmcs.fmcs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.inchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdChemReactions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdCoordGen' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDepictor' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdDistGeom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFMCS' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFingerprintGenerator' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst:2: WARNING: Title underline too short. rdkit.Chem.rdForceFieldHelpers module ================================= WARNING: autodoc: failed to import module 'Chem.rdForceFieldHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdFreeSASA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMMPA' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolAlign' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolCatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolChemicalFeatures module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolChemicalFeatures' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolDescriptors module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolHash' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst:2: WARNING: Title underline too short. rdkit.Chem.rdMolInterchange module ================================= WARNING: autodoc: failed to import module 'Chem.rdMolInterchange' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdMolTransforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst:2: WARNING: Title underline too short. rdkit.Chem.rdPartialCharges module ================================= WARNING: autodoc: failed to import module 'Chem.rdPartialCharges' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst:2: WARNING: Title underline too short. rdkit.Chem.rdRGroupDecomposition module ================================= WARNING: autodoc: failed to import module 'Chem.rdRGroupDecomposition' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdReducedGraphs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdSLNParse' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdShapeHelpers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdStructChecker' from module 'rdkit'; the following exception was raised: No module named 'rdkit' /build/rdkit-201809.1+dfsg/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst:2: WARNING: Title underline too short. rdkit.Chem.rdSubstructLibrary module ================================= WARNING: autodoc: failed to import module 'Chem.rdSubstructLibrary' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdchem' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfiltercatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdfragcatalog' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdinchi' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolfiles' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdmolops' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdqueries' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Chem.rdtrajectory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataManip.Metric' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsemble' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitEnsembleDb' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.BitUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.HierarchyVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.LazySignature' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.TopNContainer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DataStructs.VectCollection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbConnection' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbInfo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbModule' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbReport' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbResultSet' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.DbUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Dbase.StorageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'DistanceGeometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ForceField' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Geometry' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.AnalyzeComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.BuildComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Butina' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.ClusterVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Clusters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Murtagh' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Resemblance' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.Standardize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Cluster.murtagh_test' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.AdjustComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.BayesComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Composite.Composite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.CompositeRun' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.DataUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.FindQuantBounds' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.MLData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Quantize' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.SplitData' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Stats' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Data.Transforms' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildQuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.BuildSigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.DecTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Forest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.ID3' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.PruneTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.QuantTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.SigTree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.Tree' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.TreeVis' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.DecTree.randomtest' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.CompoundDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Descriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.MoleculeDescriptors' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Descriptors.Parser' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.EnrichPlot' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.GrowComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitClusterer' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.BitRank' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.InfoTheory.entropy' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.DistFunctions' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.KNN.KNNRegressionModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MLUtils.VoteImg' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.MatOps' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.PackageUtils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ModelPackage.Packager' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.ClassificationModel' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.NaiveBayes.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.ActFuncs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.CrossValidate' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.NetNode' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Network' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Neural.Trainers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.SLT.Risk' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.Scoring.Scoring' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.ScreenComposite' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'ML.files' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'Numerics' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDConfig' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDLogger' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDPaths' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'RDRandom' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'SimDivFilters.SimilarityPickers' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'TestRunner' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Filter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Node' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbMolSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.DbPickleSupplier' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SDSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsMolFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmartsRemover' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesDupeFilter' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesOutput' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.SmilesSupply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.NodeLib.demo' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Output' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Supply' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'VLib.Transform' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'six' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.cactvs' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemdraw_qax' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.chemutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.comhack' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.fileutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.listutils' from module 'rdkit'; the following exception was raised: No module named 'rdkit' WARNING: autodoc: failed to import module 'utils.spiral' from module 'rdkit'; the following exception was raised: No module named 'rdkit' looking for now-outdated files... none found pickling environment... done checking consistency... /build/rdkit-201809.1+dfsg/Docs/Book/source/modules.rst: WARNING: document isn't included in any toctree done processing RDKit.tex...index Overview Install GettingStartedInPython RDKit_Book Cookbook Cartridge BackwardsIncompatibleChanges api-docs source/rdkit source/rdkit.Avalon source/rdkit.Avalon.pyAvalonTools source/rdkit.Chem source/rdkit.Chem.AtomPairs source/rdkit.Chem.AtomPairs.Pairs source/rdkit.Chem.AtomPairs.Sheridan source/rdkit.Chem.AtomPairs.Torsions source/rdkit.Chem.AtomPairs.Utils source/rdkit.Chem.ChemUtils source/rdkit.Chem.ChemUtils.AlignDepict source/rdkit.Chem.ChemUtils.BulkTester source/rdkit.Chem.ChemUtils.DescriptorUtilities source/rdkit.Chem.ChemUtils.SDFToCSV source/rdkit.Chem.ChemUtils.TemplateExpand source/rdkit.Chem.Draw source/rdkit.Chem.Draw.IPythonConsole source/rdkit.Chem.Draw.MolDrawing source/rdkit.Chem.Draw.SimilarityMaps source/rdkit.Chem.Draw.rdMolDraw2D source/rdkit.Chem.Draw.aggCanvas source/rdkit.Chem.Draw.cairoCanvas source/rdkit.Chem.Draw.canvasbase source/rdkit.Chem.Draw.mplCanvas source/rdkit.Chem.Draw.qtCanvas source/rdkit.Chem.EState source/rdkit.Chem.EState.AtomTypes source/rdkit.Chem.EState.EState source/rdkit.Chem.EState.EState_VSA source/rdkit.Chem.EState.Fingerprinter source/rdkit.Chem.FeatMaps source/rdkit.Chem.FeatMaps.FeatMapParser source/rdkit.Chem.FeatMaps.FeatMapPoint source/rdkit.Chem.FeatMaps.FeatMapUtils source/rdkit.Chem.FeatMaps.FeatMaps source/rdkit.Chem.Features source/rdkit.Chem.Features.FeatDirUtilsRD source/rdkit.Chem.Features.ShowFeats source/rdkit.Chem.Fingerprints source/rdkit.Chem.Fingerprints.ClusterMols source/rdkit.Chem.Fingerprints.DbFpSupplier source/rdkit.Chem.Fingerprints.FingerprintMols source/rdkit.Chem.Fingerprints.MolSimilarity source/rdkit.Chem.Fingerprints.SimilarityScreener source/rdkit.Chem.Fraggle source/rdkit.Chem.Fraggle.FraggleSim source/rdkit.Chem.MolDb source/rdkit.Chem.MolDb.FingerprintUtils source/rdkit.Chem.MolDb.Loader source/rdkit.Chem.MolDb.Loader_orig source/rdkit.Chem.MolDb.Loader_sa source/rdkit.Chem.MolKey source/rdkit.Chem.MolKey.InchiInfo source/rdkit.Chem.MolKey.MolKey source/rdkit.Chem.Pharm2D source/rdkit.Chem.Pharm2D.Generate source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D source/rdkit.Chem.Pharm2D.LazyGenerator source/rdkit.Chem.Pharm2D.Matcher source/rdkit.Chem.Pharm2D.SigFactory source/rdkit.Chem.Pharm2D.Utils source/rdkit.Chem.Pharm3D source/rdkit.Chem.Pharm3D.EmbedLib source/rdkit.Chem.Pharm3D.ExcludedVolume source/rdkit.Chem.Pharm3D.Pharmacophore source/rdkit.Chem.Scaffolds source/rdkit.Chem.Scaffolds.MurckoScaffold source/rdkit.Chem.Scaffolds.ScaffoldTree source/rdkit.Chem.SimpleEnum source/rdkit.Chem.SimpleEnum.Enumerator source/rdkit.Chem.Subshape source/rdkit.Chem.Subshape.BuilderUtils source/rdkit.Chem.Subshape.SubshapeAligner source/rdkit.Chem.Subshape.SubshapeBuilder source/rdkit.Chem.Subshape.SubshapeObjects source/rdkit.Chem.Subshape.testCombined source/rdkit.Chem.Suppliers source/rdkit.Chem.Suppliers.DbMolSupplier source/rdkit.Chem.Suppliers.MolSupplier source/rdkit.Chem.fmcs source/rdkit.Chem.fmcs.fmcs source/rdkit.Chem.AllChem source/rdkit.Chem.BRICS source/rdkit.Chem.BuildFragmentCatalog source/rdkit.Chem.ChemicalFeatures source/rdkit.Chem.ChemicalForceFields source/rdkit.Chem.Crippen source/rdkit.Chem.DSViewer source/rdkit.Chem.Descriptors source/rdkit.Chem.Descriptors3D source/rdkit.Chem.EnumerateHeterocycles source/rdkit.Chem.EnumerateStereoisomers source/rdkit.Chem.FastSDMolSupplier source/rdkit.Chem.FeatFinderCLI source/rdkit.Chem.FilterCatalog source/rdkit.Chem.FragmentCatalog source/rdkit.Chem.FragmentMatcher source/rdkit.Chem.Fragments source/rdkit.Chem.FunctionalGroups source/rdkit.Chem.GraphDescriptors source/rdkit.Chem.Graphs source/rdkit.Chem.Lipinski source/rdkit.Chem.MACCSkeys source/rdkit.Chem.MCS source/rdkit.Chem.MolCatalog source/rdkit.Chem.MolStandardize source/rdkit.Chem.MolStandardize.rdMolStandardize source/rdkit.Chem.MolSurf source/rdkit.Chem.PandasTools source/rdkit.Chem.PeriodicTable source/rdkit.Chem.PropertyMol source/rdkit.Chem.PyMol source/rdkit.Chem.QED source/rdkit.Chem.Randomize source/rdkit.Chem.Recap source/rdkit.Chem.ReducedGraphs source/rdkit.Chem.SATIS source/rdkit.Chem.SaltRemover source/rdkit.Chem.ShowMols source/rdkit.Chem.TemplateAlign source/rdkit.Chem.TorsionFingerprints source/rdkit.Chem.inchi source/rdkit.Chem.rdchem source/rdkit.Chem.rdDistGeom source/rdkit.Chem.rdqueries source/rdkit.Chem.rdFMCS source/rdkit.Chem.rdMolAlign source/rdkit.Chem.rdMolHash source/rdkit.Chem.rdReducedGraphs source/rdkit.Chem.rdtrajectory source/rdkit.Chem.rdMolTransforms source/rdkit.Chem.rdmolfiles source/rdkit.Chem.rdPartialCharges source/rdkit.Chem.rdMolCatalog source/rdkit.Chem.rdCoordGen source/rdkit.Chem.rdMolChemicalFeatures source/rdkit.Chem.rdMMPA source/rdkit.Chem.rdRGroupDecomposition source/rdkit.Chem.rdForceFieldHelpers source/rdkit.Chem.rdDepictor source/rdkit.Chem.rdChemicalFeatures source/rdkit.Chem.rdmolops source/rdkit.Chem.rdFreeSASA source/rdkit.Chem.rdMolInterchange source/rdkit.Chem.rdShapeHelpers source/rdkit.Chem.rdinchi source/rdkit.Chem.rdChemReactions source/rdkit.Chem.rdSubstructLibrary source/rdkit.Chem.rdfiltercatalog source/rdkit.Chem.rdfragcatalog source/rdkit.Chem.rdStructChecker source/rdkit.Chem.rdMolDescriptors source/rdkit.Chem.rdFingerprintGenerator source/rdkit.Chem.rdSLNParse source/rdkit.DataManip source/rdkit.DataManip.Metric source/rdkit.DataStructs source/rdkit.DataStructs.BitEnsemble source/rdkit.DataStructs.BitEnsembleDb source/rdkit.DataStructs.BitUtils source/rdkit.DataStructs.HierarchyVis source/rdkit.DataStructs.LazySignature source/rdkit.DataStructs.TopNContainer source/rdkit.DataStructs.VectCollection source/rdkit.Dbase source/rdkit.Dbase.DbConnection source/rdkit.Dbase.DbInfo source/rdkit.Dbase.DbModule source/rdkit.Dbase.DbReport source/rdkit.Dbase.DbResultSet source/rdkit.Dbase.DbUtils source/rdkit.Dbase.StorageUtils source/rdkit.DistanceGeometry source/rdkit.ForceField source/rdkit.Geometry source/rdkit.ML source/rdkit.ML.Cluster source/rdkit.ML.Cluster.Butina source/rdkit.ML.Cluster.ClusterUtils source/rdkit.ML.Cluster.ClusterVis source/rdkit.ML.Cluster.Clusters source/rdkit.ML.Cluster.Murtagh source/rdkit.ML.Cluster.Resemblance source/rdkit.ML.Cluster.Standardize source/rdkit.ML.Cluster.murtagh_test source/rdkit.ML.Composite source/rdkit.ML.Composite.AdjustComposite source/rdkit.ML.Composite.BayesComposite source/rdkit.ML.Composite.Composite source/rdkit.ML.Data source/rdkit.ML.Data.DataUtils source/rdkit.ML.Data.FindQuantBounds source/rdkit.ML.Data.MLData source/rdkit.ML.Data.Quantize source/rdkit.ML.Data.SplitData source/rdkit.ML.Data.Stats source/rdkit.ML.Data.Transforms source/rdkit.ML.DecTree source/rdkit.ML.DecTree.BuildQuantTree source/rdkit.ML.DecTree.BuildSigTree source/rdkit.ML.DecTree.CrossValidate source/rdkit.ML.DecTree.DecTree source/rdkit.ML.DecTree.Forest source/rdkit.ML.DecTree.ID3 source/rdkit.ML.DecTree.PruneTree source/rdkit.ML.DecTree.QuantTree source/rdkit.ML.DecTree.SigTree source/rdkit.ML.DecTree.Tree source/rdkit.ML.DecTree.TreeUtils source/rdkit.ML.DecTree.TreeVis source/rdkit.ML.DecTree.randomtest source/rdkit.ML.Descriptors source/rdkit.ML.Descriptors.CompoundDescriptors source/rdkit.ML.Descriptors.Descriptors source/rdkit.ML.Descriptors.MoleculeDescriptors source/rdkit.ML.Descriptors.Parser source/rdkit.ML.InfoTheory source/rdkit.ML.InfoTheory.BitClusterer source/rdkit.ML.InfoTheory.BitRank source/rdkit.ML.InfoTheory.entropy source/rdkit.ML.KNN source/rdkit.ML.KNN.CrossValidate source/rdkit.ML.KNN.DistFunctions source/rdkit.ML.KNN.KNNClassificationModel source/rdkit.ML.KNN.KNNModel source/rdkit.ML.KNN.KNNRegressionModel source/rdkit.ML.MLUtils source/rdkit.ML.MLUtils.VoteImg source/rdkit.ML.ModelPackage source/rdkit.ML.ModelPackage.PackageUtils source/rdkit.ML.ModelPackage.Packager source/rdkit.ML.NaiveBayes source/rdkit.ML.NaiveBayes.ClassificationModel source/rdkit.ML.NaiveBayes.CrossValidate source/rdkit.ML.Neural source/rdkit.ML.Neural.ActFuncs source/rdkit.ML.Neural.CrossValidate source/rdkit.ML.Neural.NetNode source/rdkit.ML.Neural.Network source/rdkit.ML.Neural.Trainers source/rdkit.ML.SLT source/rdkit.ML.SLT.Risk source/rdkit.ML.Scoring source/rdkit.ML.Scoring.Scoring source/rdkit.ML.AnalyzeComposite source/rdkit.ML.BuildComposite source/rdkit.ML.CompositeRun source/rdkit.ML.EnrichPlot source/rdkit.ML.GrowComposite source/rdkit.ML.MatOps source/rdkit.ML.ScreenComposite source/rdkit.ML.files source/rdkit.Numerics source/rdkit.SimDivFilters source/rdkit.SimDivFilters.SimilarityPickers source/rdkit.VLib source/rdkit.VLib.NodeLib source/rdkit.VLib.NodeLib.DbMolSupply source/rdkit.VLib.NodeLib.DbPickleSupplier source/rdkit.VLib.NodeLib.SDSupply source/rdkit.VLib.NodeLib.SmartsMolFilter source/rdkit.VLib.NodeLib.SmartsRemover source/rdkit.VLib.NodeLib.SmilesDupeFilter source/rdkit.VLib.NodeLib.SmilesOutput source/rdkit.VLib.NodeLib.SmilesSupply source/rdkit.VLib.NodeLib.demo source/rdkit.VLib.Filter source/rdkit.VLib.Node source/rdkit.VLib.Output source/rdkit.VLib.Supply source/rdkit.VLib.Transform source/rdkit.utils source/rdkit.utils.cactvs source/rdkit.utils.chemdraw source/rdkit.utils.chemdraw_qax source/rdkit.utils.chemutils source/rdkit.utils.comhack source/rdkit.utils.fileutils source/rdkit.utils.listutils source/rdkit.utils.spiral source/rdkit.RDConfig source/rdkit.RDLogger source/rdkit.RDPaths source/rdkit.RDRandom source/rdkit.TestRunner source/rdkit.six resolving references... writing... done copying images... [ 3%] images/picture_1.png copying images... [ 7%] images/picture_0.png copying images... [ 10%] images/picture_3.png copying images... [ 14%] images/picture_2.png copying images... [ 17%] images/picture_4.png copying images... [ 21%] images/cdk2_mol1.png copying images... [ 25%] images/cdk2_mol2.png copying images... [ 28%] images/cdk2_molgrid.png copying images... [ 32%] images/cdk2_molgrid_aligned.png copying images... [ 35%] images/mfp2_bit872.svg copying images... [ 39%] images/rdk_bit1553.svg copying images... [ 42%] images/rdk_bit1553_2.svg copying images... [ 46%] images/similarity_map_fp1.png copying images... [ 50%] images/similarity_map_fp2.png copying images... [ 53%] images/similarity_map_fp3.png copying images... [ 57%] images/similarity_map_charges.png copying images... [ 60%] images/similarity_map_crippen.png copying images... [ 64%] images/picture_6.png copying images... [ 67%] images/picture_5.png copying images... [ 71%] images/picture_9.png copying images... [ 75%] images/picture_8.png copying images... [ 78%] images/picture_7.png copying images... [ 82%] images/picture_10.png copying images... [ 85%] images/picture_12.png copying images... [ 89%] images/picture_11.png copying images... [ 92%] images/picture_10.jpg copying images... [ 96%] images/indole1.png copying images... [100%] images/similarity_map_rf.png copying TeX support files... done build succeeded, 296 warnings. The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). Running LaTeX files through pdflatex... make -C _build/latex all-pdf make[3]: Entering directory '/build/rdkit-201809.1+dfsg/Docs/Book/_build/latex' latexmk -pdf -dvi- -ps- 'RDKit.tex' Latexmk: This is Latexmk, John Collins, 25 October 2018, version: 4.61. Rule 'pdflatex': Rules & subrules not known to be previously run: pdflatex Rule 'pdflatex': The following rules & subrules became out-of-date: 'pdflatex' ------------ Run number 1 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "RDKit.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2018-12-01> (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v3.2a <2019/01/15> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file RDKit.idx (./RDKit.aux) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 108--109 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 202. [2] [3] [4] Chapter 2. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 988--990 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [14] Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1004--1005 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [15] [16] Chapter 3. [17] Underfull \hbox (badness 10000) in paragraph at lines 1094--1095 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [18] [19] LaTeX Warning: Hyper reference `GettingStartedInPython:chem-vs-allchem' on page 20 undefined on input line 1273. [20] [21] [22] LaTeX Warning: Hyper reference `GettingStartedInPython:the-sssr-problem' on pag e 23 undefined on input line 1488. [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1621--1623 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1621--1623 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1641--1646 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] LaTeX Warning: Hyper reference `GettingStartedInPython:chemical-reactions' on p age 33 undefined on input line 2035. LaTeX Warning: Hyper reference `GettingStartedInPython:chemical-reactions' on p age 33 undefined on input line 2080. [33] [34] [35] [36] [37] [38] LaTeX Warning: Hyper reference `GettingStartedInPython:feature-definitions-used -in-the-morgan-fingerprints' on page 39 undefined on input line 2502. [39] [40] [41] [42 <./mfp2_bit872.png> <./rdk_bit1553.png> <./rdk_bit1553_2.png >] [43] Overfull \vbox (9.6296pt too high) detected at line 2819 [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] LaTeX Warning: Hyper reference `GettingStartedInPython:list-of-available-descri ptors' on page 46 undefined on input line 2851. [46 <./similarity_map_fp3.png>] [47] [48 <./similarity_map_charges.png>] LaTeX Warning: Hyper reference `RDKit_Book::doc' on page 49 undefined on input line 2914. [49 <./similarity_map_crippen.png>] [50] [51] [52] [53] [54] LaTeX Warning: Hyper reference `RDKit_Book::doc' on page 55 undefined on input line 3319. [55] [56] [57] [58] Underfull \hbox (badness 6792) in paragraph at lines 3562--3565 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [59] [60] [61 <./picture_6.png>] [62] Underfull \hbox (badness 10000) in paragraph at lines 3882--3886 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3892--3896 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3960--3961 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3965--3966 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3994--3997 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4008--4010 [] Underfull \hbox (badness 10000) in paragraph at lines 4008--4010 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4027--4030 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4036--4040 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4046--4050 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| Underfull \hbox (badness 7273) in paragraph at lines 4091--4094 \T1/ptm/m/n/10 and Con-soni ^^PDe-scrip-tors from [63] Package longtable Warning: Column widths have changed (longtable) in table 1 on input line 4098. Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 De-scrip- Overfull \hbox (19.60335pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 tor/Descriptor Overfull \hbox (3.88354pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Lan- Overfull \hbox (8.88354pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 best fit Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 PMI1, Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 PMI2, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 NPR1, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ra- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 dius of Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 In-er-tial Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 shape Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ec-cen- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 As- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Sphe- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 roc-ity Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Au-to- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 GET- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| [64] Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Fin-ger-print Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Lan- Overfull \hbox (2.77637pt too wide) in paragraph at lines 4321--4321 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Topo-log-i-cal Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Mor- Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 2D Phar-ma- [65] Overfull \hbox (0.97221pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Fea- Overfull \hbox (8.75237pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Donor| Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ac- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [$([O,S;H1;v2;!$(*-*=[O,N,P,S])]),$([O,S;H0;v2]),$([O,S;-]),$( [N;v3;! Overfull \hbox (2.08232pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Aro- Overfull \hbox (5.422pt too wide) in paragraph at lines 4371--4371 \T1/ptm/m/n/10 matic| Overfull \hbox (5.9722pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Halo- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ba- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [#7;+,$([N;H2&+0][$([C,a]);!$([C,a](=O))]),$([N;H1&+0]([$([C,a ]);! Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 \T1/pcr/m/n/10 $([C,a](=O))])[$([C,a]);!$([C,a](=O))]),$([N;H0&+0]([C;!$(C(=O)) ])([C;! Overfull \hbox (9.86208pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Acidic| [66 <./picture_5.png (PNG copy)>] [67] [68] Chapter 4. [69 <./picture_9.png (PNG copy)>] [70 <./picture_8.png> <./picture_7.png (PNG c opy)>] [71 <./picture_10.png> <./picture_12.png>] [72 <./picture_11.png>] [73] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4709--4709 [] Underfull \hbox (badness 10000) in paragraph at lines 4709--4709 [74] [75] [76] [77] [78] [79] LaTeX Warning: Hyper reference `RDKit_Book:ph4-figure' on page 80 undefined on input line 5165. [80] [81 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5369 [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [84] [85] [86] Chapter 5. [87] [88 <./indole1.png>] Overfull \vbox (2.48352pt too high) detected at line 5882 [89] [90] [91] Overfull \vbox (1.52577pt too high) detected at line 6067 [92] [93] [94] Overfull \vbox (2.13905pt too high) detected at line 6246 [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6279--6280 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [97 <./similarity_map_rf.png>] [98] [99] Underfull \vbox (badness 10000) detected at line 6505 Overfull \vbox (2.68169pt too high) detected at line 6505 [100] [101] [102] Chapter 6. [103] [104] [105] Overfull \hbox (232.24419pt too wide) in paragraph at lines 6740--6740 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)C(CCCNC([]=[]O)OCc1ccccc1)NC([]=[]O)OC(C)(C)C| Overfull \hbox (86.44435pt too wide) in paragraph at lines 6741--6741 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)CCC([]=[]O)[O[]- Underfull \vbox (badness 1383) detected at line 6747 [106] Overfull \hbox (372.64403pt too wide) in paragraph at lines 6789--6789 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6791--6791 []\T1/pcr/m/n/9 CNCCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CCCCNC)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)cc 1)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]@[][]\T1/pcr /b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6793--6793 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC(C)C)C([]=[]O)N[C[]@[] []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6795--6795 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6797--6797 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6799--6799 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC1CCCCC1)C([]=[]O)N[C[] @[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6802--6802 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6803--6803 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC| Overfull \hbox (426.64397pt too wide) in paragraph at lines 6804--6804 []|\T1/pcr/m/n/9 ([]=[]O)CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[ ]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @ H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2 )NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)N| [107] Overfull \hbox (388.84401pt too wide) in paragraph at lines 6826--6826 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O)O)| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6829--6829 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6830--6830 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC([]=[]O| Overfull \hbox (442.84395pt too wide) in paragraph at lines 6831--6831 []|\T1/pcr/m/n/9 )CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr /m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)NC([]= []O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC([]=[]O)[C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6833--6833 []\T1/pcr/m/n/9 NC(N)[]=[]NCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](N)CC([]=[]O)O)C([]=[]O)N[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ][]1[]CCSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C( []=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/ 9 ](Cc2ccc(O)cc| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6835--6835 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)NC([]=[]| Overfull \vbox (13.68167pt too high) detected at line 6845 [108] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| Overfull \hbox (21.64442pt too wide) in paragraph at lines 6894--6894 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [109] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6917--6917 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Chapter 7. [121] [122] Chapter 8. [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Chapter 9. [141] [142] Chapter 10. No file RDKit.ind. Package longtable Warning: Table widths have changed. Rerun LaTeX. [143] (./RDKit.aux) Package rerunfilecheck Warning: File `RDKit.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (147 pages, 1593101 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Missing input file: 'RDKit.ind' from line 'No file RDKit.ind.' Latexmk: References changed. Latexmk: References changed. Latexmk: Log file says output to 'RDKit.pdf' Rule 'makeindex RDKit.idx': File changes, etc: Changed files, or newly in use since previous run(s): 'RDKit.idx' Non-existent destination files: 'RDKit.ind' ------------ Run number 1 of rule 'makeindex RDKit.idx' ------------ ------------ Running 'makeindex -s python.ist -o "RDKit.ind" "RDKit.idx"' ------------ === TeX engine is 'pdfTeX' Latexmk: applying rule 'makeindex RDKit.idx'... This is makeindex, version 2.15 [TeX Live 2019/dev] (kpathsea + Thai support). Scanning style file ./python.ist.......done (7 attributes redefined, 0 ignored). Scanning input file RDKit.idx...done (0 entries accepted, 0 rejected). Nothing written in RDKit.ind. Transcript written in RDKit.ilg. Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'RDKit.aux' 'RDKit.ind' 'RDKit.out' ------------ Run number 2 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "RDKit.tex"' ------------ Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2018-12-01> (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v3.2a <2019/01/15> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file RDKit.idx (./RDKit.aux LaTeX Warning: Label `Overview:an-overview-of-the-rdkit' multiply defined. LaTeX Warning: Label `Overview:what-is-it' multiply defined. LaTeX Warning: Label `Overview:open-source-toolkit-for-cheminformatics' multipl y defined. LaTeX Warning: Label `Overview:operational' multiply defined. LaTeX Warning: Label `Overview:history' multiply defined. LaTeX Warning: Label `Overview:integration-with-other-open-source-projects' mul tiply defined. LaTeX Warning: Label `Overview:usage-by-other-open-source-projects' multiply de fined. LaTeX Warning: Label `Overview:the-contrib-directory' multiply defined. LaTeX Warning: Label `Overview:footnotes' multiply defined. LaTeX Warning: Label `Overview:license' multiply defined. LaTeX Warning: Label `Install:installation' multiply defined. LaTeX Warning: Label `Install:cross-platform-under-anaconda-python-fastest-inst all' multiply defined. LaTeX Warning: Label `Install:introduction-to-anaconda' multiply defined. LaTeX Warning: Label `Install:how-to-get-conda' multiply defined. LaTeX Warning: Label `Install:how-to-install-rdkit-with-conda' multiply defined . LaTeX Warning: Label `Install:conda-forge-package' multiply defined. LaTeX Warning: Label `Install:how-to-build-from-source-with-conda' multiply def ined. LaTeX Warning: Label `Install:macos-10-12-sierra-python-3-environment' multiply defined. LaTeX Warning: Label `Install:linux-x86-64-python-3-environment' multiply defin ed. LaTeX Warning: Label `Install:installing-and-using-postgresql-and-the-rdkit-pos tgresql-cartridge-from-a-conda-environment' multiply defined. LaTeX Warning: Label `Install:linux-and-os-x' multiply defined. LaTeX Warning: Label `Install:installation-from-repositories' multiply defined. LaTeX Warning: Label `Install:ubuntu-12-04-and-later' multiply defined. LaTeX Warning: Label `Install:fedora-centos-and-rhel' multiply defined. LaTeX Warning: Label `Install:os-x' multiply defined. LaTeX Warning: Label `Install:building-from-source' multiply defined. LaTeX Warning: Label `Install:installing-prerequisites-from-source' multiply de fined. LaTeX Warning: Label `Install:installing-boost' multiply defined. LaTeX Warning: Label `Install:building-the-rdkit' multiply defined. LaTeX Warning: Label `Install:testing-the-build-optional-but-recommended' multi ply defined. LaTeX Warning: Label `Install:advanced' multiply defined. LaTeX Warning: Label `Install:specifying-an-alternate-boost-installation' multi ply defined. LaTeX Warning: Label `Install:specifying-an-alternate-python-installation' mult iply defined. LaTeX Warning: Label `Install:disabling-the-python-wrappers' multiply defined. LaTeX Warning: Label `Install:recommended-extras' multiply defined. LaTeX Warning: Label `Install:building-the-java-wrappers' multiply defined. LaTeX Warning: Label `Install:optional-packages' multiply defined. LaTeX Warning: Label `Install:frequently-encountered-problems' multiply defined . LaTeX Warning: Label `Install:windows' multiply defined. LaTeX Warning: Label `Install:prerequisites' multiply defined. LaTeX Warning: Label `Install:recommended-extras' multiply defined. LaTeX Warning: Label `Install:installation-of-rdkit-binaries' multiply defined. LaTeX Warning: Label `Install:installation-from-source' multiply defined. LaTeX Warning: Label `Install:extra-software-to-install' multiply defined. LaTeX Warning: Label `Install:setup-and-preparation' multiply defined. LaTeX Warning: Label `Install:building-from-the-command-line-recommended' multi ply defined. LaTeX Warning: Label `Install:testing-the-build-optional-but-recommended' multi ply defined. LaTeX Warning: Label `Install:license' multiply defined. LaTeX Warning: Label `Cookbook:rdkit-cookbook' multiply defined. LaTeX Warning: Label `Cookbook:what-is-this' multiply defined. LaTeX Warning: Label `Cookbook:miscellaneous-topics' multiply defined. LaTeX Warning: Label `Cookbook:using-a-different-aromaticity-model' multiply de fined. LaTeX Warning: Label `Cookbook:manipulating-molecules' multiply defined. LaTeX Warning: Label `Cookbook:cleaning-up-heterocycles' multiply defined. LaTeX Warning: Label `Cookbook:parallel-conformation-generation' multiply defin ed. LaTeX Warning: Label `Cookbook:neutralizing-charged-molecules' multiply defined . LaTeX Warning: Label `Cookbook:d-functionality-in-the-rdkit' multiply defined. LaTeX Warning: Label `Cookbook:using-scikit-learn-with-rdkit' multiply defined. LaTeX Warning: Label `Cookbook:using-custom-mcs-atom-types' multiply defined. LaTeX Warning: Label `Cookbook:clustering-molecules' multiply defined. LaTeX Warning: Label `Cookbook:rmsd-calculation-between-n-molecules' multiply d efined. LaTeX Warning: Label `Cookbook:introduction' multiply defined. LaTeX Warning: Label `Cookbook:details' multiply defined. LaTeX Warning: Label `Cookbook:license' multiply defined. LaTeX Warning: Label `Cartridge:the-rdkit-database-cartridge' multiply defined. LaTeX Warning: Label `Cartridge:what-is-this' multiply defined. LaTeX Warning: Label `Cartridge:tutorial' multiply defined. LaTeX Warning: Label `Cartridge:introduction' multiply defined. LaTeX Warning: Label `Cartridge:creating-databases' multiply defined. LaTeX Warning: Label `Cartridge:configuration' multiply defined. LaTeX Warning: Label `Cartridge:creating-a-database-from-a-file' multiply defin ed. LaTeX Warning: Label `Cartridge:loading-chembl' multiply defined. LaTeX Warning: Label `Cartridge:substructure-searches' multiply defined. LaTeX Warning: Label `Cartridge:smarts-based-queries' multiply defined. LaTeX Warning: Label `Cartridge:using-stereochemistry' multiply defined. LaTeX Warning: Label `Cartridge:tuning-queries' multiply defined. LaTeX Warning: Label `Cartridge:similarity-searches' multiply defined. LaTeX Warning: Label `Cartridge:adjusting-the-similarity-cutoff' multiply defin ed. LaTeX Warning: Label `Cartridge:using-the-mcs-code' multiply defined. LaTeX Warning: Label `Cartridge:reference-guide' multiply defined. LaTeX Warning: Label `Cartridge:new-types' multiply defined. LaTeX Warning: Label `Cartridge:parameters' multiply defined. LaTeX Warning: Label `Cartridge:operators' multiply defined. LaTeX Warning: Label `Cartridge:similarity-search' multiply defined. LaTeX Warning: Label `Cartridge:substructure-and-exact-structure-search' multip ly defined. LaTeX Warning: Label `Cartridge:molecule-comparison' multiply defined. LaTeX Warning: Label `Cartridge:functions' multiply defined. LaTeX Warning: Label `Cartridge:fingerprint-related' multiply defined. LaTeX Warning: Label `Cartridge:generating-fingerprints' multiply defined. LaTeX Warning: Label `Cartridge:working-with-fingerprints' multiply defined. LaTeX Warning: Label `Cartridge:fingerprint-i-o' multiply defined. LaTeX Warning: Label `Cartridge:molecule-related' multiply defined. LaTeX Warning: Label `Cartridge:molecule-i-o-and-validation' multiply defined. LaTeX Warning: Label `Cartridge:substructure-operations' multiply defined. LaTeX Warning: Label `Cartridge:descriptors' multiply defined. LaTeX Warning: Label `Cartridge:connectivity-descriptors' multiply defined. LaTeX Warning: Label `Cartridge:mcs' multiply defined. LaTeX Warning: Label `Cartridge:other' multiply defined. LaTeX Warning: Label `Cartridge:using-the-cartridge-from-python' multiply defin ed. LaTeX Warning: Label `Cartridge:license' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:backwards-incompatible-chang es' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:release-2018-03' multiply de fined. LaTeX Warning: Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomer ic-smiles-by-default' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d -conformation-when-the-includestereo-flag-is-set' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:the-conformation-generation- code-now-uses-etkdg-by-default' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:release-2018-09' multiply de fined. LaTeX Warning: Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isom eric-smiles-by-default' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringon ly-option-in-the-mcs-code' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:the-conformation-generation- code-now-uses-etkdg-by-default-when-called-from-python' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:license' multiply defined. ) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./RDKit.out) (./RDKit.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./RDKit.toc [1] [2] [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [4]) [5] [6] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 108--109 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 202. [2] [3] [4] Chapter 2. [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 988--990 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [14] Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1004--1005 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [15] [16] Chapter 3. [17] Underfull \hbox (badness 10000) in paragraph at lines 1094--1095 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [18] [19] [20] [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1621--1623 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1621--1623 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1641--1646 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42 <./mfp2_bit872.png> <./rdk_bit1553.png> <./rdk_bit1553_2.png>] [43] Overfull \vbox (9.6296pt too high) detected at line 2819 [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] [46 <./similari ty_map_fp3.png>] [47] [48 <./similarity_map_charges.png>] [49 <./similarity_map _crippen.png>] [50] [51] [52] [53] [54] [55] [56] [57] [58] Underfull \hbox (badness 6792) in paragraph at lines 3562--3565 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [59] [60] [61 <./picture_6.png>] [62] Underfull \hbox (badness 10000) in paragraph at lines 3882--3886 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3892--3896 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3960--3961 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3965--3966 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3994--3997 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4008--4010 [] Underfull \hbox (badness 10000) in paragraph at lines 4008--4010 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4027--4030 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4036--4040 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4046--4050 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| Underfull \hbox (badness 7273) in paragraph at lines 4091--4094 \T1/ptm/m/n/10 and Con-soni ^^PDe-scrip-tors from [63] Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 De-scrip- Overfull \hbox (19.60335pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 tor/Descriptor Overfull \hbox (3.88354pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Lan- Overfull \hbox (8.88354pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 best fit Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 PMI1, Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 PMI2, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 NPR1, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ra- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 dius of Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 In-er-tial Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 shape Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ec-cen- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 As- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Sphe- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 roc-ity Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Au-to- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 GET- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| [64] Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Fin-ger-print Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Lan- Overfull \hbox (2.77637pt too wide) in paragraph at lines 4321--4321 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Topo-log-i-cal Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Mor- Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 2D Phar-ma- [65] Overfull \hbox (0.97221pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Fea- Overfull \hbox (8.75237pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Donor| Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ac- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [$([O,S;H1;v2;!$(*-*=[O,N,P,S])]),$([O,S;H0;v2]),$([O,S;-]),$( [N;v3;! Overfull \hbox (2.08232pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Aro- Overfull \hbox (5.422pt too wide) in paragraph at lines 4371--4371 \T1/ptm/m/n/10 matic| Overfull \hbox (5.9722pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Halo- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ba- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [#7;+,$([N;H2&+0][$([C,a]);!$([C,a](=O))]),$([N;H1&+0]([$([C,a ]);! Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 \T1/pcr/m/n/10 $([C,a](=O))])[$([C,a]);!$([C,a](=O))]),$([N;H0&+0]([C;!$(C(=O)) ])([C;! Overfull \hbox (9.86208pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Acidic| [66 <./picture_5.png (PNG copy)>] [67] [68] Chapter 4. [69 <./picture_9.png (PNG copy)>] [70 <./picture_8.png> <./picture_7.png (PNG c opy)>] [71 <./picture_10.png> <./picture_12.png>] [72 <./picture_11.png>] [73] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4709--4709 [] Underfull \hbox (badness 10000) in paragraph at lines 4709--4709 [74] [75] [76] [77] [78] [79] [80] [81 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5369 [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [84] [85] [86] Chapter 5. [87] [88 <./indole1.png>] Overfull \vbox (2.48352pt too high) detected at line 5882 [89] [90] [91] Overfull \vbox (1.52577pt too high) detected at line 6067 [92] [93] [94] Overfull \vbox (2.13905pt too high) detected at line 6246 [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6279--6280 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [97 <./similarity_map_rf.png>] [98] [99] Underfull \vbox (badness 10000) detected at line 6505 Overfull \vbox (2.68169pt too high) detected at line 6505 [100] [101] [102] Chapter 6. [103] [104] [105] Overfull \hbox (232.24419pt too wide) in paragraph at lines 6740--6740 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)C(CCCNC([]=[]O)OCc1ccccc1)NC([]=[]O)OC(C)(C)C| Overfull \hbox (86.44435pt too wide) in paragraph at lines 6741--6741 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)CCC([]=[]O)[O[]- Underfull \vbox (badness 1383) detected at line 6747 [106] Overfull \hbox (372.64403pt too wide) in paragraph at lines 6789--6789 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6791--6791 []\T1/pcr/m/n/9 CNCCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CCCCNC)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)cc 1)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]@[][]\T1/pcr /b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6793--6793 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC(C)C)C([]=[]O)N[C[]@[] []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6795--6795 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6797--6797 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6799--6799 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC1CCCCC1)C([]=[]O)N[C[] @[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6802--6802 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6803--6803 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC| Overfull \hbox (426.64397pt too wide) in paragraph at lines 6804--6804 []|\T1/pcr/m/n/9 ([]=[]O)CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[ ]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @ H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2 )NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)N| [107] Overfull \hbox (388.84401pt too wide) in paragraph at lines 6826--6826 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O)O)| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6829--6829 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6830--6830 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC([]=[]O| Overfull \hbox (442.84395pt too wide) in paragraph at lines 6831--6831 []|\T1/pcr/m/n/9 )CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr /m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)NC([]= []O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC([]=[]O)[C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6833--6833 []\T1/pcr/m/n/9 NC(N)[]=[]NCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](N)CC([]=[]O)O)C([]=[]O)N[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ][]1[]CCSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C( []=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/ 9 ](Cc2ccc(O)cc| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6835--6835 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)NC([]=[]| Overfull \vbox (13.68167pt too high) detected at line 6845 [108] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| Overfull \hbox (21.64442pt too wide) in paragraph at lines 6894--6894 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [109] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6917--6917 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Chapter 7. [121] [122] Chapter 8. [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Chapter 9. [141] [142] Chapter 10. (./RDKit.ind) [143] (./RDKit.aux) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (151 pages, 1623130 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Log file says output to 'RDKit.pdf' Latexmk: List of undefined refs and citations: Label `BackwardsIncompatibleChanges:backwards-incompatible-changes' multiply defined Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringonly-option-in-the-mcs-code' multiply defined Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:license' multiply defined Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d-conformation-when-the-includestereo-flag-is-set' multiply defined Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:release-2018-03' multiply defined Label `BackwardsIncompatibleChanges:release-2018-09' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default-when-called-from-python' multiply defined Label `Cartridge:adjusting-the-similarity-cutoff' multiply defined Label `Cartridge:configuration' multiply defined Label `Cartridge:connectivity-descriptors' multiply defined Label `Cartridge:creating-a-database-from-a-file' multiply defined Label `Cartridge:creating-databases' multiply defined Label `Cartridge:descriptors' multiply defined Label `Cartridge:fingerprint-i-o' multiply defined Label `Cartridge:fingerprint-related' multiply defined Label `Cartridge:functions' multiply defined Label `Cartridge:generating-fingerprints' multiply defined Label `Cartridge:introduction' multiply defined Label `Cartridge:license' multiply defined Label `Cartridge:loading-chembl' multiply defined Label `Cartridge:mcs' multiply defined Label `Cartridge:molecule-comparison' multiply defined Label `Cartridge:molecule-i-o-and-validation' multiply defined Label `Cartridge:molecule-related' multiply defined Label `Cartridge:new-types' multiply defined Label `Cartridge:operators' multiply defined Label `Cartridge:other' multiply defined Label `Cartridge:parameters' multiply defined Label `Cartridge:reference-guide' multiply defined Label `Cartridge:similarity-search' multiply defined Label `Cartridge:similarity-searches' multiply defined Label `Cartridge:smarts-based-queries' multiply defined Label `Cartridge:substructure-and-exact-structure-search' multiply defined Label `Cartridge:substructure-operations' multiply defined Label `Cartridge:substructure-searches' multiply defined Label `Cartridge:the-rdkit-database-cartridge' multiply defined Label `Cartridge:tuning-queries' multiply defined Label `Cartridge:tutorial' multiply defined Label `Cartridge:using-stereochemistry' multiply defined Label `Cartridge:using-the-cartridge-from-python' multiply defined Label `Cartridge:using-the-mcs-code' multiply defined Label `Cartridge:what-is-this' multiply defined Label `Cartridge:working-with-fingerprints' multiply defined Label `Cookbook:cleaning-up-heterocycles' multiply defined Label `Cookbook:clustering-molecules' multiply defined Label `Cookbook:d-functionality-in-the-rdkit' multiply defined Label `Cookbook:details' multiply defined Label `Cookbook:introduction' multiply defined Label `Cookbook:license' multiply defined Label `Cookbook:manipulating-molecules' multiply defined Label `Cookbook:miscellaneous-topics' multiply defined Label `Cookbook:neutralizing-charged-molecules' multiply defined Label `Cookbook:parallel-conformation-generation' multiply defined Label `Cookbook:rdkit-cookbook' multiply defined Label `Cookbook:rmsd-calculation-between-n-molecules' multiply defined Label `Cookbook:using-a-different-aromaticity-model' multiply defined Label `Cookbook:using-custom-mcs-atom-types' multiply defined Label `Cookbook:using-scikit-learn-with-rdkit' multiply defined Label `Cookbook:what-is-this' multiply defined Label `Install:advanced' multiply defined Label `Install:building-from-source' multiply defined Label `Install:building-from-the-command-line-recommended' multiply defined Label `Install:building-the-java-wrappers' multiply defined Label `Install:building-the-rdkit' multiply defined Label `Install:conda-forge-package' multiply defined Label `Install:cross-platform-under-anaconda-python-fastest-install' multiply defined Label `Install:disabling-the-python-wrappers' multiply defined Label `Install:extra-software-to-install' multiply defined Label `Install:fedora-centos-and-rhel' multiply defined Label `Install:frequently-encountered-problems' multiply defined Label `Install:how-to-build-from-source-with-conda' multiply defined Label `Install:how-to-get-conda' multiply defined Label `Install:how-to-install-rdkit-with-conda' multiply defined Label `Install:installation' multiply defined Label `Install:installation-from-repositories' multiply defined Label `Install:installation-from-source' multiply defined Label `Install:installation-of-rdkit-binaries' multiply defined Label `Install:installing-and-using-postgresql-and-the-rdkit-postgresql-cartridge-from-a-conda-environment' multiply defined Label `Install:installing-boost' multiply defined Label `Install:installing-prerequisites-from-source' multiply defined Label `Install:introduction-to-anaconda' multiply defined Label `Install:license' multiply defined Label `Install:linux-and-os-x' multiply defined Label `Install:linux-x86-64-python-3-environment' multiply defined Label `Install:macos-10-12-sierra-python-3-environment' multiply defined Label `Install:optional-packages' multiply defined Label `Install:os-x' multiply defined Label `Install:prerequisites' multiply defined Label `Install:recommended-extras' multiply defined Label `Install:setup-and-preparation' multiply defined Label `Install:specifying-an-alternate-boost-installation' multiply defined Label `Install:specifying-an-alternate-python-installation' multiply defined Label `Install:testing-the-build-optional-but-recommended' multiply defined Label `Install:ubuntu-12-04-and-later' multiply defined Label `Install:windows' multiply defined Label `Overview:an-overview-of-the-rdkit' multiply defined Label `Overview:footnotes' multiply defined Label `Overview:history' multiply defined Label `Overview:integration-with-other-open-source-projects' multiply defined Label `Overview:license' multiply defined Label `Overview:open-source-toolkit-for-cheminformatics' multiply defined Label `Overview:operational' multiply defined Label `Overview:the-contrib-directory' multiply defined Label `Overview:usage-by-other-open-source-projects' multiply defined Label `Overview:what-is-it' multiply defined Rule 'pdflatex': File changes, etc: Changed files, or newly in use since previous run(s): 'RDKit.toc' ------------ Run number 3 of rule 'pdflatex' ------------ ------------ Running 'pdflatex -recorder "RDKit.tex"' ------------ === TeX engine is 'pdfTeX' Latexmk: applying rule 'pdflatex'... This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./RDKit.tex LaTeX2e <2018-12-01> (./sphinxmanual.cls Document Class: sphinxmanual 2018/12/22 v1.8.3 Document class (Sphinx manual) (/usr/share/texlive/texmf-dist/tex/latex/base/report.cls Document Class: report 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))) (/usr/share/texlive/texmf-dist/tex/latex/base/inputenc.sty) (/usr/share/texlive/texmf-dist/tex/latex/cmap/cmap.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/fontenc.sty (/usr/share/texlive/texmf-dist/tex/latex/base/t1enc.def)<>) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.sty (/usr/share/texlive/texmf-dist/tex/generic/babel/switch.def) (/usr/share/texlive/texmf-dist/tex/generic/babel-english/english.ldf (/usr/share/texlive/texmf-dist/tex/generic/babel/babel.def (/usr/share/texlive/texmf-dist/tex/generic/babel/txtbabel.def)))) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (/usr/share/texlive/texmf-dist/tex/latex/fncychap/fncychap.sty) (./sphinx.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def))) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/textcomp.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.def (/usr/share/texlive/texmf-dist/tex/latex/base/ts1enc.dfu))) (/usr/share/texlive/texmf-dist/tex/latex/titlesec/titlesec.sty) (/usr/share/texlive/texmf-dist/tex/latex/tabulary/tabulary.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty)) (/usr/share/texlive/texmf-dist/tex/latex/tools/longtable.sty) (/usr/share/texlive/texmf-dist/tex/latex/varwidth/varwidth.sty) (./sphinxmulticell.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/makeidx.sty) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty Style option: `fancyvrb' v3.2a <2019/01/15> (tvz)) (./footnotehyper-sphinx.sty) (/usr/share/texlive/texmf-dist/tex/latex/float/float.sty) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip.sty (/usr/share/texlive/texmf-dist/tex/latex/parskip/parskip-2001-04-09.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/upquote/upquote.sty) (/usr/share/texlive/texmf-dist/tex/latex/capt-of/capt-of.sty) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (./sphinxhighlight.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/kvsetkeys.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/infwarerr.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/etexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))) (/usr/share/texlive/texmf-dist/tex/latex/geometry/geometry.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifpdf.sty) (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifvtex.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/puenc.def) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/hypcap.sty) Writing index file RDKit.idx (./RDKit.aux LaTeX Warning: Label `Overview:an-overview-of-the-rdkit' multiply defined. LaTeX Warning: Label `Overview:what-is-it' multiply defined. LaTeX Warning: Label `Overview:open-source-toolkit-for-cheminformatics' multipl y defined. LaTeX Warning: Label `Overview:operational' multiply defined. LaTeX Warning: Label `Overview:history' multiply defined. LaTeX Warning: Label `Overview:integration-with-other-open-source-projects' mul tiply defined. LaTeX Warning: Label `Overview:usage-by-other-open-source-projects' multiply de fined. LaTeX Warning: Label `Overview:the-contrib-directory' multiply defined. LaTeX Warning: Label `Overview:footnotes' multiply defined. LaTeX Warning: Label `Overview:license' multiply defined. LaTeX Warning: Label `Install:installation' multiply defined. LaTeX Warning: Label `Install:cross-platform-under-anaconda-python-fastest-inst all' multiply defined. LaTeX Warning: Label `Install:introduction-to-anaconda' multiply defined. LaTeX Warning: Label `Install:how-to-get-conda' multiply defined. LaTeX Warning: Label `Install:how-to-install-rdkit-with-conda' multiply defined . LaTeX Warning: Label `Install:conda-forge-package' multiply defined. LaTeX Warning: Label `Install:how-to-build-from-source-with-conda' multiply def ined. LaTeX Warning: Label `Install:macos-10-12-sierra-python-3-environment' multiply defined. LaTeX Warning: Label `Install:linux-x86-64-python-3-environment' multiply defin ed. LaTeX Warning: Label `Install:installing-and-using-postgresql-and-the-rdkit-pos tgresql-cartridge-from-a-conda-environment' multiply defined. LaTeX Warning: Label `Install:linux-and-os-x' multiply defined. LaTeX Warning: Label `Install:installation-from-repositories' multiply defined. LaTeX Warning: Label `Install:ubuntu-12-04-and-later' multiply defined. LaTeX Warning: Label `Install:fedora-centos-and-rhel' multiply defined. LaTeX Warning: Label `Install:os-x' multiply defined. LaTeX Warning: Label `Install:building-from-source' multiply defined. LaTeX Warning: Label `Install:installing-prerequisites-from-source' multiply de fined. LaTeX Warning: Label `Install:installing-boost' multiply defined. LaTeX Warning: Label `Install:building-the-rdkit' multiply defined. LaTeX Warning: Label `Install:testing-the-build-optional-but-recommended' multi ply defined. LaTeX Warning: Label `Install:advanced' multiply defined. LaTeX Warning: Label `Install:specifying-an-alternate-boost-installation' multi ply defined. LaTeX Warning: Label `Install:specifying-an-alternate-python-installation' mult iply defined. LaTeX Warning: Label `Install:disabling-the-python-wrappers' multiply defined. LaTeX Warning: Label `Install:recommended-extras' multiply defined. LaTeX Warning: Label `Install:building-the-java-wrappers' multiply defined. LaTeX Warning: Label `Install:optional-packages' multiply defined. LaTeX Warning: Label `Install:frequently-encountered-problems' multiply defined . LaTeX Warning: Label `Install:windows' multiply defined. LaTeX Warning: Label `Install:prerequisites' multiply defined. LaTeX Warning: Label `Install:recommended-extras' multiply defined. LaTeX Warning: Label `Install:installation-of-rdkit-binaries' multiply defined. LaTeX Warning: Label `Install:installation-from-source' multiply defined. LaTeX Warning: Label `Install:extra-software-to-install' multiply defined. LaTeX Warning: Label `Install:setup-and-preparation' multiply defined. LaTeX Warning: Label `Install:building-from-the-command-line-recommended' multi ply defined. LaTeX Warning: Label `Install:testing-the-build-optional-but-recommended' multi ply defined. LaTeX Warning: Label `Install:license' multiply defined. LaTeX Warning: Label `Cookbook:rdkit-cookbook' multiply defined. LaTeX Warning: Label `Cookbook:what-is-this' multiply defined. LaTeX Warning: Label `Cookbook:miscellaneous-topics' multiply defined. LaTeX Warning: Label `Cookbook:using-a-different-aromaticity-model' multiply de fined. LaTeX Warning: Label `Cookbook:manipulating-molecules' multiply defined. LaTeX Warning: Label `Cookbook:cleaning-up-heterocycles' multiply defined. LaTeX Warning: Label `Cookbook:parallel-conformation-generation' multiply defin ed. LaTeX Warning: Label `Cookbook:neutralizing-charged-molecules' multiply defined . LaTeX Warning: Label `Cookbook:d-functionality-in-the-rdkit' multiply defined. LaTeX Warning: Label `Cookbook:using-scikit-learn-with-rdkit' multiply defined. LaTeX Warning: Label `Cookbook:using-custom-mcs-atom-types' multiply defined. LaTeX Warning: Label `Cookbook:clustering-molecules' multiply defined. LaTeX Warning: Label `Cookbook:rmsd-calculation-between-n-molecules' multiply d efined. LaTeX Warning: Label `Cookbook:introduction' multiply defined. LaTeX Warning: Label `Cookbook:details' multiply defined. LaTeX Warning: Label `Cookbook:license' multiply defined. LaTeX Warning: Label `Cartridge:the-rdkit-database-cartridge' multiply defined. LaTeX Warning: Label `Cartridge:what-is-this' multiply defined. LaTeX Warning: Label `Cartridge:tutorial' multiply defined. LaTeX Warning: Label `Cartridge:introduction' multiply defined. LaTeX Warning: Label `Cartridge:creating-databases' multiply defined. LaTeX Warning: Label `Cartridge:configuration' multiply defined. LaTeX Warning: Label `Cartridge:creating-a-database-from-a-file' multiply defin ed. LaTeX Warning: Label `Cartridge:loading-chembl' multiply defined. LaTeX Warning: Label `Cartridge:substructure-searches' multiply defined. LaTeX Warning: Label `Cartridge:smarts-based-queries' multiply defined. LaTeX Warning: Label `Cartridge:using-stereochemistry' multiply defined. LaTeX Warning: Label `Cartridge:tuning-queries' multiply defined. LaTeX Warning: Label `Cartridge:similarity-searches' multiply defined. LaTeX Warning: Label `Cartridge:adjusting-the-similarity-cutoff' multiply defin ed. LaTeX Warning: Label `Cartridge:using-the-mcs-code' multiply defined. LaTeX Warning: Label `Cartridge:reference-guide' multiply defined. LaTeX Warning: Label `Cartridge:new-types' multiply defined. LaTeX Warning: Label `Cartridge:parameters' multiply defined. LaTeX Warning: Label `Cartridge:operators' multiply defined. LaTeX Warning: Label `Cartridge:similarity-search' multiply defined. LaTeX Warning: Label `Cartridge:substructure-and-exact-structure-search' multip ly defined. LaTeX Warning: Label `Cartridge:molecule-comparison' multiply defined. LaTeX Warning: Label `Cartridge:functions' multiply defined. LaTeX Warning: Label `Cartridge:fingerprint-related' multiply defined. LaTeX Warning: Label `Cartridge:generating-fingerprints' multiply defined. LaTeX Warning: Label `Cartridge:working-with-fingerprints' multiply defined. LaTeX Warning: Label `Cartridge:fingerprint-i-o' multiply defined. LaTeX Warning: Label `Cartridge:molecule-related' multiply defined. LaTeX Warning: Label `Cartridge:molecule-i-o-and-validation' multiply defined. LaTeX Warning: Label `Cartridge:substructure-operations' multiply defined. LaTeX Warning: Label `Cartridge:descriptors' multiply defined. LaTeX Warning: Label `Cartridge:connectivity-descriptors' multiply defined. LaTeX Warning: Label `Cartridge:mcs' multiply defined. LaTeX Warning: Label `Cartridge:other' multiply defined. LaTeX Warning: Label `Cartridge:using-the-cartridge-from-python' multiply defin ed. LaTeX Warning: Label `Cartridge:license' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:backwards-incompatible-chang es' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:release-2018-03' multiply de fined. LaTeX Warning: Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomer ic-smiles-by-default' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d -conformation-when-the-includestereo-flag-is-set' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:the-conformation-generation- code-now-uses-etkdg-by-default' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:release-2018-09' multiply de fined. LaTeX Warning: Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isom eric-smiles-by-default' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringon ly-option-in-the-mcs-code' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:the-conformation-generation- code-now-uses-etkdg-by-default-when-called-from-python' multiply defined. LaTeX Warning: Label `BackwardsIncompatibleChanges:license' multiply defined. ) (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1ptm.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./RDKit.out) (./RDKit.out) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd)<><><><> (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] (./RDKit.toc [1] [2] [3] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) [4]) [5] [6] Chapter 1. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) Underfull \hbox (badness 10000) in paragraph at lines 108--109 []\T1/ptm/m/n/10 Cheminformatics nodes for KN-IME (dis-tributed from the KN-IME com-mu-nity site: [1] LaTeX Warning: Hyper reference `Overview:footnote1' on page 2 undefined on inpu t line 202. [2] [3] [4] Chapter 2. [5] [6] [7] [8] [9] Underfull \hbox (badness 10000) in paragraph at lines 709--710 []\T1/ptm/m/n/10 You can en-able sup-port for the Avalon toolkit by adding the ar-gu-ment [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1pcr.fd) [11] Underfull \hbox (badness 10000) in paragraph at lines 807--808 []\T1/ptm/m/n/10 Add \T1/pcr/m/n/10 #define BOOST_PYTHON_NO_PY_SIGNATURES \T1/p tm/m/n/10 at the top of \T1/pcr/m/n/10 Code/GraphMol/Wrap/ [12] [13] Underfull \hbox (badness 10000) in paragraph at lines 988--990 []\T1/ptm/m/n/10 Run cmake. Here's an ex-am-ple ba-sic com-mand line for 64bit win-dows that will down- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 load the InChI and Avalon toolkit sources from the InChI Trust a nd Source-Forge repos- Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 i-to-ries, re-spec-tively, and build the Post-greSQL car-tridge for the in-stalled ver-sion of Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/ptm/m/n/10 Post-greSQL: \T1/pcr/m/n/10 cmake -DRDK_BUILD_PYTHON_WRAPPERS=ON -DBOOST_ROOT=C:/ Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 boost -DRDK_BUILD_INCHI_SUPPORT=ON -DRDK_BUILD_AVALON_SUPPORT=ON Underfull \hbox (badness 10000) in paragraph at lines 988--990 \T1/pcr/m/n/10 -DRDK_BUILD_PGSQL=ON -DPostgreSQL_ROOT="C:\Program Files\Postgre SQL\9.5" [14] Underfull \hbox (badness 10000) in paragraph at lines 998--999 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" Underfull \hbox (badness 10000) in paragraph at lines 1004--1005 []\T1/pcr/m/n/10 "C:\Program Files\PostgreSQL\9.5\bin\pg_ctl.exe" -N "postgresq l-9.5" [15] [16] Chapter 3. [17] Underfull \hbox (badness 10000) in paragraph at lines 1094--1095 []\T1/ptm/m/n/10 displays a mes-sage like: \T1/pcr/m/n/10 [12:18:01] Explicit v alence for atom # 1 O greater than [18] [19] [20] [21] [22] [23] [24] Underfull \hbox (badness 10000) in paragraph at lines 1621--1623 []\T1/ptm/m/n/10 Another op-tion for Com-pute2DCoords al-lows you to gen-er-ate 2D de-pic-tions for molecules that Underfull \hbox (badness 7649) in paragraph at lines 1621--1623 \T1/ptm/m/n/10 closely mimic 3D con-for-ma-tions. This is avail-able us-ing the func-tion \T1/pcr/m/n/10 rdkit.Chem.AllChem. [25 <./picture_1.png (PNG copy)> <./picture_0.png (PNG copy)> <./picture_3.png (PNG copy)>] Underfull \hbox (badness 10000) in paragraph at lines 1641--1646 []\T1/ptm/m/n/10 More fine-grained con-trol can be ob-tained us-ing the core fu nc-tion \T1/pcr/m/n/10 rdkit.Chem.rdDepictor. [26 <./picture_2.png> <./picture_4.png>] [27] [28] [29 <./cdk2_mol1.png> <./cdk 2_mol2.png>] [30 <./cdk2_molgrid.png>] [31 <./cdk2_molgrid_aligned.png (PNG cop y)>] [32] [33] [34] [35] [36] [37] [38] [39] [40] [41] [42 <./mfp2_bit872.png> <./rdk_bit1553.png> <./rdk_bit1553_2.png>] [43] Overfull \vbox (9.6296pt too high) detected at line 2819 [44 <./similarity_map_fp1.png>] [45 <./similarity_map_fp2.png>] [46 <./similari ty_map_fp3.png>] [47] [48 <./similarity_map_charges.png>] [49 <./similarity_map _crippen.png>] [50] [51] [52] [53] [54] [55] [56] [57] [58] Underfull \hbox (badness 6792) in paragraph at lines 3562--3565 []\T1/ptm/m/n/10 Or we can use the bit rank-ing func-tion-al-ity from the \T1/p cr/m/n/10 rdkit.ML.InfoTheory.rdInfoTheory. [59] [60] [61 <./picture_6.png>] [62] Underfull \hbox (badness 10000) in paragraph at lines 3882--3886 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Underfull \hbox (badness 10000) in paragraph at lines 3892--3896 []|\T1/ptm/m/n/10 Wildman and Crip-pen \T1/ptm/m/it/10 JCICS Overfull \hbox (26.64615pt too wide) in paragraph at lines 3960--3961 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}Rings| Overfull \hbox (91.89552pt too wide) in paragraph at lines 3965--3966 []|\T1/ptm/m/n/10 Num{Aromatic,Saturated,Aliphatic}{Hetero,Carbo}cycles| Underfull \hbox (badness 10000) in paragraph at lines 3994--3997 []|\T1/ptm/m/n/10 Number of bridge-head atoms Overfull \hbox (150.19545pt too wide) in paragraph at lines 4008--4010 [] Underfull \hbox (badness 10000) in paragraph at lines 4008--4010 \T1/ptm/m/n/10 to the orig-i-nal Underfull \hbox (badness 10000) in paragraph at lines 4027--4030 \T1/ptm/m/n/10 tions [][]$http : / / www . chemcomp . com / Underfull \hbox (badness 10000) in paragraph at lines 4036--4040 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4046--4050 \T1/ptm/m/n/10 tri-bu-tions [][]$http : / / www . chemcomp . Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 []|\T1/ptm/m/n/10 implemented us-ing a set of Underfull \hbox (badness 10000) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 SMARTS def-i-ni-tions in $(RD- Overfull \hbox (9.18636pt too wide) in paragraph at lines 4082--4085 \T1/ptm/m/n/10 BASE)/Data/FragmentDescriptors.csv| Underfull \hbox (badness 7273) in paragraph at lines 4091--4094 \T1/ptm/m/n/10 and Con-soni ^^PDe-scrip-tors from [63] Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 De-scrip- Overfull \hbox (19.60335pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 tor/Descriptor Overfull \hbox (3.88354pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Lan- Overfull \hbox (8.88354pt too wide) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 best fit Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 PMI1, Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 PMI2, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 NPR1, Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ra- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 dius of Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 In-er-tial Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 shape Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Ec-cen- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 As- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Sphe- Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 \T1/ptm/m/n/10 roc-ity Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 Au-to- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| Underfull \hbox (badness 10000) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 GET- Overfull \hbox (2.95337pt too wide) in paragraph at lines 4241--4241 []\T1/ptm/m/n/10 C++| [64] Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Fin-ger-print Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Lan- Overfull \hbox (2.77637pt too wide) in paragraph at lines 4321--4321 \T1/ptm/m/n/10 guage| Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Topo-log-i-cal Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 Mor- Underfull \hbox (badness 10000) in paragraph at lines 4321--4321 []\T1/ptm/m/n/10 2D Phar-ma- [65] Overfull \hbox (0.97221pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Fea- Overfull \hbox (8.75237pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Donor| Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ac- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [$([O,S;H1;v2;!$(*-*=[O,N,P,S])]),$([O,S;H0;v2]),$([O,S;-]),$( [N;v3;! Overfull \hbox (2.08232pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Aro- Overfull \hbox (5.422pt too wide) in paragraph at lines 4371--4371 \T1/ptm/m/n/10 matic| Overfull \hbox (5.9722pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Halo- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Ba- Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 []\T1/pcr/m/n/10 [#7;+,$([N;H2&+0][$([C,a]);!$([C,a](=O))]),$([N;H1&+0]([$([C,a ]);! Underfull \hbox (badness 10000) in paragraph at lines 4371--4371 \T1/pcr/m/n/10 $([C,a](=O))])[$([C,a]);!$([C,a](=O))]),$([N;H0&+0]([C;!$(C(=O)) ])([C;! Overfull \hbox (9.86208pt too wide) in paragraph at lines 4371--4371 []\T1/ptm/m/n/10 Acidic| [66 <./picture_5.png (PNG copy)>] [67] [68] Chapter 4. [69 <./picture_9.png (PNG copy)>] [70 <./picture_8.png> <./picture_7.png (PNG c opy)>] [71 <./picture_10.png> <./picture_12.png>] [72 <./picture_11.png>] [73] Overfull \hbox (53.45044pt too wide) in paragraph at lines 4709--4709 [] Underfull \hbox (badness 10000) in paragraph at lines 4709--4709 [74] [75] [76] [77] [78] [79] [80] [81 <./picture_10.jpg>] Overfull \vbox (2.72571pt too high) detected at line 5369 [82] [83] Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Chi-ral-i-ty-Pos-si- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 _Re-ac-tion-De- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mo-lAtomMap- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 molFileIn-ver- Underfull \hbox (badness 10000) in paragraph at lines 5601--5601 []\T1/ptm/m/n/10 mol-Rxn-Com-po- [84] [85] [86] Chapter 5. [87] [88 <./indole1.png>] Overfull \vbox (2.48352pt too high) detected at line 5882 [89] [90] [91] Overfull \vbox (1.52577pt too high) detected at line 6067 [92] [93] [94] Overfull \vbox (2.13905pt too high) detected at line 6246 [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 6279--6280 []\T1/ptm/m/n/10 IPython note-book: [][]$http : / / nbviewer . ipython . org / gist / greglandrum / 8351725$[][] [][]$https : / / gist . github . com / gregla ndrum / [97 <./similarity_map_rf.png>] [98] [99] Underfull \vbox (badness 10000) detected at line 6505 Overfull \vbox (2.68169pt too high) detected at line 6505 [100] [101] [102] Chapter 6. [103] [104] [105] Overfull \hbox (232.24419pt too wide) in paragraph at lines 6740--6740 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)C(CCCNC([]=[]O)OCc1ccccc1)NC([]=[]O)OC(C)(C)C| Overfull \hbox (86.44435pt too wide) in paragraph at lines 6741--6741 []\T1/pcr/m/n/9 CC(C)C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N2c3cc ccc3[C[]@[][]@[]](O)(C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]3[]NC([]=[]O) c4ccccc4N4C([]=[]O)c5ccccc5NC34)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]N1C([ ]=[]O)CCC([]=[]O)[O[]- Underfull \vbox (badness 1383) detected at line 6747 [106] Overfull \hbox (372.64403pt too wide) in paragraph at lines 6789--6789 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6791--6791 []\T1/pcr/m/n/9 CNCCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CCCCNC)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)cc 1)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)NC([]=[]O)[C[]@[][]\T1/pcr /b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc1ccccc1)NC([]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6793--6793 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC(C)C)C([]=[]O)N[C[]@[] []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6795--6795 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6797--6797 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6799--6799 []\T1/pcr/m/n/9 CC([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc2ccccc2c 1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]\T1/p cr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccccc1)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1 /pcr/m/n/9 ](CO)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1ccc(O)c c1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCNC1CCCCC1)C([]=[]O)N[C[] @[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6802--6802 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6803--6803 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC| Overfull \hbox (426.64397pt too wide) in paragraph at lines 6804--6804 []|\T1/pcr/m/n/9 ([]=[]O)CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[ ]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @ H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2 )NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC| Overfull \hbox (372.64403pt too wide) in paragraph at lines 6808--6808 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)N| [107] Overfull \hbox (388.84401pt too wide) in paragraph at lines 6826--6826 []\T1/pcr/m/n/9 CNCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]= []C(N)N)C([]=[]O)N1C[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C[C[]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( Cc1ccc(O)cc1)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)N[C[]@[][ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc1c[nH]cn1)C([]=[]O)N1CCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc 1ccccc1)C([]=[]O)O)| Overfull \hbox (351.04405pt too wide) in paragraph at lines 6829--6829 [][]\T1/pcr/m/n/9 N)NS([]=[]O)([]=[]O)c1c(C)c(C)c2c(c1C)CCC(C)(C)O2)C([]=[]O)N[ C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)N[C[]@[][]\T1/pcr/b/n/ 9 @H[]\T1/pcr/m/n/9 ](COC(C)(C)C)C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m /n/9 ](CCCCNC([]=[]O)c1ccccc1N)C([]=[]O)NCC([]=[]O)O)[C[]@[][]\T1/pcr/b/n/9 @H[ ]\T1/pcr/m/n/9 ](C)OC(C)(C)C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6830--6830 []\T1/pcr/m/n/9 CC(C)C[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O) [C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]([C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]c3ccccc23)NC([]=[ ]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C(C)C)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[] \T1/pcr/m/n/9 ](NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCCN)NC([]=[]O )[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]CCCN2C([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCC(N)[]=[]O)NC([]=[]O| Overfull \hbox (442.84395pt too wide) in paragraph at lines 6831--6831 []|\T1/pcr/m/n/9 )CNC([]=[]O)CN)CSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ]( C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccc(O)cc2)C([]=[]O)N[C[ ]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CO)C([]=[]O)N[C[]\T1/pcr/b/n/9 @H[]\T1/ pcr/m/n/9 ](C([]=[]O)NCC([]=[]O)NCC(N)[]=[]O)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr /m/n/9 ](C)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)NC([]= []O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2ccccc2)NC([]=[]O)CNC([]=[]O)[C| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6833--6833 []\T1/pcr/m/n/9 NC(N)[]=[]NCCC[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](NC([]=[]O)[ C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](N)CC([]=[]O)O)C([]=[]O)N[C[]\T1/pcr/b /n/9 @H[]\T1/pcr/m/n/9 ][]1[]CCSSC[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C( []=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C []\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T 1/pcr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/ 9 ](Cc2ccc(O)cc| Overfull \hbox (388.84401pt too wide) in paragraph at lines 6835--6835 []\T1/pcr/m/n/9 CC1(C)SSC(C)(C)[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](C([]= []O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](Cc2c[nH]cn2)C([]=[]O)N2CCC[C[]\ T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]2[]C([]=[]O)N[C[]@[][]\T1/pcr/b/n/9 @H[]\T1/p cr/m/n/9 ](Cc2ccccc2)C([]=[]O)O)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ] (Cc2ccc(O)cc2)NC([]=[]O)[C[]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ][]1[]NC([]=[]O)[C[ ]\T1/pcr/b/n/9 @H[]\T1/pcr/m/n/9 ](CCCN[]=[]C(N)N)NC([]=[]| Overfull \vbox (13.68167pt too high) detected at line 6845 [108] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6858--6858 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| Overfull \hbox (21.64442pt too wide) in paragraph at lines 6894--6894 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [109] Overfull \hbox (21.64442pt too wide) in paragraph at lines 6917--6917 []\T1/pcr/m/n/9 Cn1c(Nc2c(Cl)ccc(CNC([]=[]O)C(C)(C)C)c2Cl)nc2cc(C([]=[]O)Nc3ccc c(C(F)(F)F)n3)c(N3CCC(F)(F)C3)cc21| [110] [111] [112] [113] [114] [115] [116] [117] [118] [119] [120] Chapter 7. [121] [122] Chapter 8. [123] [124] [125] [126] [127] [128] [129] [130] [131] [132] [133] [134] [135] [136] [137] [138] [139] [140] Chapter 9. [141] [142] Chapter 10. (./RDKit.ind) [143] (./RDKit.aux) LaTeX Warning: There were undefined references. LaTeX Warning: There were multiply-defined labels. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on RDKit.pdf (151 pages, 1623130 bytes). Transcript written on RDKit.log. Latexmk: Index file 'RDKit.idx' was written Latexmk: Log file says output to 'RDKit.pdf' Latexmk: List of undefined refs and citations: Label `BackwardsIncompatibleChanges:backwards-incompatible-changes' multiply defined Label `BackwardsIncompatibleChanges:changes-to-ringmatchesringonly-option-in-the-mcs-code' multiply defined Label `BackwardsIncompatibleChanges:getatomsmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:license' multiply defined Label `BackwardsIncompatibleChanges:moltomolblock-generates-a-2d-conformation-when-the-includestereo-flag-is-set' multiply defined Label `BackwardsIncompatibleChanges:moltosmiles-generates-isomeric-smiles-by-default' multiply defined Label `BackwardsIncompatibleChanges:release-2018-03' multiply defined Label `BackwardsIncompatibleChanges:release-2018-09' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default' multiply defined Label `BackwardsIncompatibleChanges:the-conformation-generation-code-now-uses-etkdg-by-default-when-called-from-python' multiply defined Label `Cartridge:adjusting-the-similarity-cutoff' multiply defined Label `Cartridge:configuration' multiply defined Label `Cartridge:connectivity-descriptors' multiply defined Label `Cartridge:creating-a-database-from-a-file' multiply defined Label `Cartridge:creating-databases' multiply defined Label `Cartridge:descriptors' multiply defined Label `Cartridge:fingerprint-i-o' multiply defined Label `Cartridge:fingerprint-related' multiply defined Label `Cartridge:functions' multiply defined Label `Cartridge:generating-fingerprints' multiply defined Label `Cartridge:introduction' multiply defined Label `Cartridge:license' multiply defined Label `Cartridge:loading-chembl' multiply defined Label `Cartridge:mcs' multiply defined Label `Cartridge:molecule-comparison' multiply defined Label `Cartridge:molecule-i-o-and-validation' multiply defined Label `Cartridge:molecule-related' multiply defined Label `Cartridge:new-types' multiply defined Label `Cartridge:operators' multiply defined Label `Cartridge:other' multiply defined Label `Cartridge:parameters' multiply defined Label `Cartridge:reference-guide' multiply defined Label `Cartridge:similarity-search' multiply defined Label `Cartridge:similarity-searches' multiply defined Label `Cartridge:smarts-based-queries' multiply defined Label `Cartridge:substructure-and-exact-structure-search' multiply defined Label `Cartridge:substructure-operations' multiply defined Label `Cartridge:substructure-searches' multiply defined Label `Cartridge:the-rdkit-database-cartridge' multiply defined Label `Cartridge:tuning-queries' multiply defined Label `Cartridge:tutorial' multiply defined Label `Cartridge:using-stereochemistry' multiply defined Label `Cartridge:using-the-cartridge-from-python' multiply defined Label `Cartridge:using-the-mcs-code' multiply defined Label `Cartridge:what-is-this' multiply defined Label `Cartridge:working-with-fingerprints' multiply defined Label `Cookbook:cleaning-up-heterocycles' multiply defined Label `Cookbook:clustering-molecules' multiply defined Label `Cookbook:d-functionality-in-the-rdkit' multiply defined Label `Cookbook:details' multiply defined Label `Cookbook:introduction' multiply defined Label `Cookbook:license' multiply defined Label `Cookbook:manipulating-molecules' multiply defined Label `Cookbook:miscellaneous-topics' multiply defined Label `Cookbook:neutralizing-charged-molecules' multiply defined Label `Cookbook:parallel-conformation-generation' multiply defined Label `Cookbook:rdkit-cookbook' multiply defined Label `Cookbook:rmsd-calculation-between-n-molecules' multiply defined Label `Cookbook:using-a-different-aromaticity-model' multiply defined Label `Cookbook:using-custom-mcs-atom-types' multiply defined Label `Cookbook:using-scikit-learn-with-rdkit' multiply defined Label `Cookbook:what-is-this' multiply defined Label `Install:advanced' multiply defined Label `Install:building-from-source' multiply defined Label `Install:building-from-the-command-line-recommended' multiply defined Label `Install:building-the-java-wrappers' multiply defined Label `Install:building-the-rdkit' multiply defined Label `Install:conda-forge-package' multiply defined Label `Install:cross-platform-under-anaconda-python-fastest-install' multiply defined Label `Install:disabling-the-python-wrappers' multiply defined Label `Install:extra-software-to-install' multiply defined Label `Install:fedora-centos-and-rhel' multiply defined Label `Install:frequently-encountered-problems' multiply defined Label `Install:how-to-build-from-source-with-conda' multiply defined Label `Install:how-to-get-conda' multiply defined Label `Install:how-to-install-rdkit-with-conda' multiply defined Label `Install:installation' multiply defined Label `Install:installation-from-repositories' multiply defined Label `Install:installation-from-source' multiply defined Label `Install:installation-of-rdkit-binaries' multiply defined Label `Install:installing-and-using-postgresql-and-the-rdkit-postgresql-cartridge-from-a-conda-environment' multiply defined Label `Install:installing-boost' multiply defined Label `Install:installing-prerequisites-from-source' multiply defined Label `Install:introduction-to-anaconda' multiply defined Label `Install:license' multiply defined Label `Install:linux-and-os-x' multiply defined Label `Install:linux-x86-64-python-3-environment' multiply defined Label `Install:macos-10-12-sierra-python-3-environment' multiply defined Label `Install:optional-packages' multiply defined Label `Install:os-x' multiply defined Label `Install:prerequisites' multiply defined Label `Install:recommended-extras' multiply defined Label `Install:setup-and-preparation' multiply defined Label `Install:specifying-an-alternate-boost-installation' multiply defined Label `Install:specifying-an-alternate-python-installation' multiply defined Label `Install:testing-the-build-optional-but-recommended' multiply defined Label `Install:ubuntu-12-04-and-later' multiply defined Label `Install:windows' multiply defined Label `Overview:an-overview-of-the-rdkit' multiply defined Label `Overview:footnotes' multiply defined Label `Overview:history' multiply defined Label `Overview:integration-with-other-open-source-projects' multiply defined Label `Overview:license' multiply defined Label `Overview:open-source-toolkit-for-cheminformatics' multiply defined Label `Overview:operational' multiply defined Label `Overview:the-contrib-directory' multiply defined Label `Overview:usage-by-other-open-source-projects' multiply defined Label `Overview:what-is-it' multiply defined Latexmk: Summary of warnings from last run of (pdf)latex: Latex found 114 multiply defined reference(s) === TeX engine is 'pdfTeX' Latexmk: All targets (RDKit.pdf) are up-to-date make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/Docs/Book/_build/latex' pdflatex finished; the PDF files are in _build/latex. make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/Docs/Book' make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/rdkit-201809.1+dfsg' cp -r rdkit obj-*/ find /build/rdkit-201809.1+dfsg -name rdchem.so /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/rdchem.so #export RDBASE=/build/rdkit-201809.1+dfsg PYTHONPATH=/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/ LD_LIBRARY_PATH="/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//lib:" PYTHONPATH=/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/:/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//rdkit/Chem/ LD_LIBRARY_PATH="/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu//lib:" dh_auto_test cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j16 Test project /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu Start 1: testDict Start 2: testRDValue Start 3: testDataStructs Start 4: testFPB Start 5: testMultiFPB Start 6: pyBV Start 7: pyDiscreteValueVect Start 8: pySparseIntVect Start 9: pyFPB Start 10: testTransforms Start 11: testGrid Start 12: testPyGeometry Start 13: testMatrices Start 14: testAlignment Start 15: pyAlignment Start 16: testOptimizer 1/142 Test #2: testRDValue ........................ Passed 0.37 sec Start 17: testUFFForceField 2/142 Test #3: testDataStructs .................... Passed 0.38 sec Start 18: testMMFFForceField 3/142 Test #4: testFPB ............................ Passed 0.37 sec Start 19: pyForceFieldConstraints 4/142 Test #10: testTransforms ..................... Passed 0.26 sec Start 20: testDistGeom 5/142 Test #13: testMatrices ....................... Passed 0.22 sec Start 21: pyDistGeom 6/142 Test #5: testMultiFPB ....................... Passed 0.42 sec Start 22: graphmolTest1 7/142 Test #11: testGrid ........................... Passed 0.28 sec Start 23: graphmolcpTest 8/142 Test #14: testAlignment ...................... Passed 0.20 sec Start 24: graphmolqueryTest 9/142 Test #16: testOptimizer ...................... Passed 0.26 sec Start 25: graphmolMolOpsTest 10/142 Test #20: testDistGeom ....................... Passed 0.36 sec Start 26: graphmoltestCanon 11/142 Test #26: graphmoltestCanon .................. Passed 0.07 sec Start 27: graphmoltestChirality 12/142 Test #23: graphmolcpTest ..................... Passed 0.42 sec Start 28: graphmoltestPickler 13/142 Test #24: graphmolqueryTest .................. Passed 0.50 sec Start 29: graphmoltestPicklerGlobalSetting 14/142 Test #29: graphmoltestPicklerGlobalSetting ... Passed 0.19 sec Start 30: graphmolIterTest 15/142 Test #17: testUFFForceField .................. Passed 0.91 sec Start 31: hanoiTest 16/142 Test #21: pyDistGeom ......................... Passed 0.90 sec Start 32: graphmolMemTest1 17/142 Test #30: graphmolIterTest ................... Passed 0.20 sec Start 33: resMolSupplierTest 18/142 Test #32: graphmolMemTest1 ................... Passed 0.11 sec Start 34: molBundleTest 19/142 Test #27: graphmoltestChirality .............. Passed 0.64 sec Start 35: test-valgrind 20/142 Test #34: molBundleTest ...................... Passed 0.16 sec Start 36: graphmolTestsCatch 21/142 Test #35: test-valgrind ...................... Passed 0.16 sec Start 37: testDepictor 22/142 Test #7: pyDiscreteValueVect ................ Passed 1.77 sec Start 38: pyDepictor 23/142 Test #8: pySparseIntVect .................... Passed 1.77 sec Start 39: smiTest1 24/142 Test #36: graphmolTestsCatch ................. Passed 0.30 sec Start 40: smiTest2 25/142 Test #40: smiTest2 ........................... Passed 0.09 sec Start 41: cxsmilesTest 26/142 Test #28: graphmoltestPickler ................ Passed 1.12 sec Start 42: smaTest1 27/142 Test #15: pyAlignment ........................ Passed 1.79 sec Start 43: smiTestCatch 28/142 Test #39: smiTest1 ........................... Passed 0.20 sec Start 44: fileParsersTest1 29/142 Test #12: testPyGeometry ..................... Passed 1.96 sec Start 45: testMolSupplier 30/142 Test #9: pyFPB .............................. Passed 2.08 sec Start 46: testMolWriter 31/142 Test #41: cxsmilesTest ....................... Passed 0.23 sec Start 47: testTplParser 32/142 Test #43: smiTestCatch ....................... Passed 0.25 sec Start 48: testMol2ToMol 33/142 Test #47: testTplParser ...................... Passed 0.20 sec Start 49: testSequence 34/142 Test #44: fileParsersTest1 ................... Passed 0.38 sec Start 50: testExtendedStereoParsing 35/142 Test #48: testMol2ToMol ...................... Passed 0.24 sec Start 51: fileParsersCatchTest 36/142 Test #50: testExtendedStereoParsing .......... Passed 0.10 sec Start 52: testSubstructMatch 37/142 Test #49: testSequence ....................... Passed 0.23 sec Start 53: testReaction 38/142 Test #51: fileParsersCatchTest ............... Passed 0.37 sec Start 54: testReactionFingerprints 39/142 Test #42: smaTest1 ........................... Passed 0.89 sec Start 55: testEnumeration 40/142 Test #45: testMolSupplier .................... Passed 0.96 sec Start 56: rxnTestCatch 41/142 Test #54: testReactionFingerprints ........... Passed 0.22 sec Start 57: pyChemReactions 42/142 Test #56: rxnTestCatch ....................... Passed 0.17 sec Start 58: pyChemReactionEnumerations 43/142 Test #37: testDepictor ....................... Passed 1.83 sec Start 59: pyChemReactionSanitize 44/142 Test #46: testMolWriter ...................... Passed 1.52 sec Start 60: testChemTransforms 45/142 Test #53: testReaction ....................... Passed 1.35 sec Start 61: testSubgraphs1 46/142 Test #1: testDict ........................... Passed 4.14 sec Start 62: testSubgraphs2 47/142 Test #62: testSubgraphs2 ..................... Passed 0.14 sec Start 63: filterCatalogTest 48/142 Test #6: pyBV ............................... Passed 4.18 sec Start 64: pyFilterCatalog 49/142 Test #60: testChemTransforms ................. Passed 0.56 sec Start 65: testFragCatalog 50/142 Test #38: pyDepictor ......................... Passed 2.45 sec Start 66: pyFragCatalog 51/142 Test #33: resMolSupplierTest ................. Passed 3.17 sec Start 67: testDescriptors 52/142 Test #19: pyForceFieldConstraints ............ Passed 4.22 sec Start 68: testAUTOCORR2D 53/142 Test #52: testSubstructMatch ................. Passed 2.05 sec Start 69: pyMolDescriptors 54/142 Test #63: filterCatalogTest .................. Passed 0.80 sec Start 70: pyMolDescriptors3D 55/142 Test #59: pyChemReactionSanitize ............. Passed 1.77 sec Start 71: testFingerprints 56/142 Test #61: testSubgraphs1 ..................... Passed 1.52 sec Start 72: testFingerprintGenerators 57/142 Test #66: pyFragCatalog ...................... Passed 1.25 sec Start 73: pyTestGenerator 58/142 Test #57: pyChemReactions .................... Passed 2.57 sec Start 74: testPartialCharges 59/142 Test #74: testPartialCharges ................. Passed 0.08 sec Start 75: pyPartialCharges 60/142 Test #69: pyMolDescriptors ................... Passed 1.42 sec Start 76: testMolTransforms 61/142 Test #76: testMolTransforms .................. Passed 0.18 sec Start 77: pyMolTransforms 62/142 Test #70: pyMolDescriptors3D ................. Passed 1.32 sec Start 78: testMMFFForceFieldHelpers 63/142 Test #73: pyTestGenerator .................... Passed 1.06 sec Start 79: testUFFForceFieldHelpers 64/142 Test #68: testAUTOCORR2D ..................... Passed 2.34 sec Start 80: testCrystalForceField 65/142 Test #77: pyMolTransforms .................... Passed 0.81 sec Start 81: pyForceFieldHelpers 66/142 Test #80: testCrystalForceField .............. Passed 0.12 sec Start 82: testDistGeomHelpers 67/142 Test #75: pyPartialCharges ................... Passed 1.43 sec Start 83: pyDistGeomHelpers 68/142 Test #81: pyForceFieldHelpers ................ Passed 1.58 sec Start 84: testMolAlign 69/142 Test #72: testFingerprintGenerators .......... Passed 3.57 sec Start 85: pyMolAlign 70/142 Test #65: testFragCatalog .................... Passed 4.96 sec Start 86: testFeatures 71/142 Test #86: testFeatures ....................... Passed 0.26 sec Start 87: pyChemicalFeatures 72/142 Test #58: pyChemReactionEnumerations ......... Passed 7.29 sec Start 88: testShapeHelpers 73/142 Test #87: pyChemicalFeatures ................. Passed 1.19 sec Start 89: pyShapeHelpers 74/142 Test #88: testShapeHelpers ................... Passed 0.17 sec Start 90: testMolCatalog 75/142 Test #90: testMolCatalog ..................... Passed 0.20 sec Start 91: pyMolCatalog 76/142 Test #25: graphmolMolOpsTest ................. Passed 11.11 sec Start 92: moldraw2DTest1 77/142 Test #89: pyShapeHelpers ..................... Passed 1.24 sec Start 93: moldraw2DRxnTest1 78/142 Test #91: pyMolCatalog ....................... Passed 1.04 sec Start 94: pyMolDraw2D 79/142 Test #93: moldraw2DRxnTest1 .................. Passed 0.26 sec Start 95: testFMCS 80/142 Test #94: pyMolDraw2D ........................ Passed 1.51 sec Start 96: pyFMCS 81/142 Test #64: pyFilterCatalog .................... Passed 11.03 sec Start 97: FMCStest 82/142 Test #97: FMCStest ........................... Passed 0.09 sec Start 98: testMolHash 83/142 Test #98: testMolHash ........................ Passed 0.37 sec Start 99: pyMolHash 84/142 Test #95: testFMCS ........................... Passed 3.84 sec Start 100: testMMPA 85/142 Test #99: pyMolHash .......................... Passed 0.80 sec Start 101: pyMMPA 86/142 Test #100: testMMPA ........................... Passed 0.52 sec Start 102: testStructChecker 87/142 Test #102: testStructChecker .................. Passed 0.24 sec Start 103: pyStructChecker 88/142 Test #92: moldraw2DTest1 ..................... Passed 5.91 sec Start 104: testReducedGraphs 89/142 Test #103: pyStructChecker .................... Passed 1.10 sec Start 105: pyReducedGraphs 90/142 Test #104: testReducedGraphs .................. Passed 0.34 sec Start 106: trajectoryTest 91/142 Test #96: pyFMCS ............................. Passed 4.53 sec Start 107: substructLibraryTest 92/142 Test #105: pyReducedGraphs .................... Passed 0.91 sec Start 108: pySubstructLibrary 93/142 Test #67: testDescriptors .................... Passed 14.58 sec Start 109: testRGroupDecomp 94/142 Test #106: trajectoryTest ..................... Passed 1.84 sec Start 110: pyRGroupDecomposition 95/142 Test #107: substructLibraryTest ............... Passed 2.21 sec Start 111: molInterchangeTest1 96/142 Test #109: testRGroupDecomp ................... Passed 1.12 sec Start 112: pyMolInterchange 97/142 Test #111: molInterchangeTest1 ................ Passed 0.21 sec Start 113: testSLNParse 98/142 Test #113: testSLNParse ....................... Passed 0.34 sec Start 114: pySLNParse 99/142 Test #110: pyRGroupDecomposition .............. Passed 1.46 sec Start 115: pyGraphMolWrap 100/142 Test #112: pyMolInterchange ................... Passed 1.05 sec Start 116: pyTestConformerWrap 101/142 Test #114: pySLNParse ......................... Passed 0.85 sec Start 117: pyTestTrajectory 102/142 Test #116: pyTestConformerWrap ................ Passed 1.01 sec Start 118: pyTestThreads 103/142 Test #117: pyTestTrajectory ................... Passed 2.78 sec Start 119: molStandardizeTest 104/142 Test #119: molStandardizeTest ................. Passed 1.17 sec Start 120: molNormalizeTest 105/142 Test #101: pyMMPA ............................. Passed 9.18 sec Start 121: molValidateTest 106/142 Test #120: molNormalizeTest ................... Passed 0.23 sec Start 122: molChargeTest 107/142 Test #121: molValidateTest .................... Passed 0.24 sec Start 123: molTautomerTest 108/142 Test #122: molChargeTest ...................... Passed 0.68 sec Start 124: molStandardizeSmallTest 109/142 Test #124: molStandardizeSmallTest ............ Passed 0.36 sec Start 125: molFragmentTest 110/142 Test #125: molFragmentTest .................... Passed 0.55 sec Start 126: pyMolStandardize 111/142 Test #126: pyMolStandardize ................... Passed 1.51 sec Start 127: testQuery 112/142 Test #127: testQuery .......................... Passed 0.10 sec Start 128: testMatCalc 113/142 Test #128: testMatCalc ........................ Passed 0.04 sec Start 129: pyMatCalc 114/142 Test #123: molTautomerTest .................... Passed 4.67 sec Start 130: testSimDivPickers 115/142 Test #130: testSimDivPickers .................. Passed 0.10 sec Start 131: pySimDivPickers 116/142 Test #108: pySubstructLibrary ................. Passed 12.00 sec Start 132: pyRanker 117/142 Test #132: pyRanker ........................... Passed 0.83 sec Start 133: testChemicalFeatures 118/142 Test #133: testChemicalFeatures ............... Passed 0.08 sec Start 134: pyFeatures 119/142 Test #129: pyMatCalc .......................... Passed 3.39 sec Start 135: pythonTestDbCLI 120/142 Test #131: pySimDivPickers .................... Passed 2.02 sec Start 136: pythonTestDirML 121/142 Test #134: pyFeatures ......................... Passed 1.11 sec Start 137: pythonTestDirDataStructs 122/142 Test #71: testFingerprints ................... Passed 27.85 sec Start 138: pythonTestDirDbase 123/142 Test #138: pythonTestDirDbase ................. Passed 2.51 sec Start 139: pythonTestDirSimDivFilters 124/142 Test #137: pythonTestDirDataStructs ........... Passed 3.96 sec Start 140: pythonTestDirVLib 125/142 Test #139: pythonTestDirSimDivFilters ......... Passed 1.88 sec Start 141: pythonTestDirChem 126/142 Test #140: pythonTestDirVLib .................. Passed 2.29 sec Start 142: pythonTestSping 127/142 Test #142: pythonTestSping .................... Passed 3.28 sec 128/142 Test #78: testMMFFForceFieldHelpers .......... Passed 37.41 sec 129/142 Test #79: testUFFForceFieldHelpers ........... Passed 45.92 sec 130/142 Test #118: pyTestThreads ...................... Passed 31.45 sec 131/142 Test #55: testEnumeration .................... Passed 52.33 sec 132/142 Test #85: pyMolAlign ......................... Passed 54.96 sec 133/142 Test #18: testMMFFForceField ................. Passed 81.29 sec 134/142 Test #136: pythonTestDirML .................... Passed 54.34 sec 135/142 Test #115: pyGraphMolWrap ..................... Passed 66.49 sec 136/142 Test #135: pythonTestDbCLI .................... Passed 79.90 sec 137/142 Test #31: hanoiTest .......................... Passed 125.13 sec 138/142 Test #83: pyDistGeomHelpers .................. Passed 165.69 sec 139/142 Test #82: testDistGeomHelpers ................ Passed 310.12 sec 140/142 Test #22: graphmolTest1 ...................... Passed 362.95 sec 141/142 Test #84: testMolAlign ....................... Passed 418.90 sec 142/142 Test #141: pythonTestDirChem ..................***Failed 468.79 sec ...... ---------------------------------------------------------------------- Ran 6 tests in 0.691s OK ...... ---------------------------------------------------------------------- Ran 6 tests in 0.328s OK ....[05:16:23] **** Pre-condition Violation valence not defined for atoms not associated with molecules Violation occurred on line 266 in file ./Code/GraphMol/Atom.cpp Failed Expression: dp_mol **** . ---------------------------------------------------------------------- Ran 5 tests in 0.062s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.053s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.105s OK ...................... ---------------------------------------------------------------------- Ran 22 tests in 0.262s OK .....s.................ss ---------------------------------------------------------------------- Ran 25 tests in 0.932s OK (skipped=3) ..s ---------------------------------------------------------------------- Ran 3 tests in 0.991s OK (skipped=1) ..............................F.... ====================================================================== FAIL: test_timeout (__main__.TestTimeout) ---------------------------------------------------------------------- Traceback (most recent call last): File "UnitTestMCS.py", line 331, in test_timeout self.assertTrue(t2 - t1 < 2, t2 - t1) AssertionError: 2.31174898148 ---------------------------------------------------------------------- Ran 35 tests in 2.445s FAILED (failures=1) .... ---------------------------------------------------------------------- Ran 4 tests in 0.087s OK . ---------------------------------------------------------------------- Ran 1 test in 0.054s OK ....... ---------------------------------------------------------------------- Ran 7 tests in 0.143s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.202s OK .ss.ss....... ---------------------------------------------------------------------- Ran 13 tests in 3.668s OK (skipped=4) ............[05:18:34] WARNING: More than one matching pattern found - picking one [05:18:34] WARNING: More than one matching pattern found - picking one .[05:18:34] WARNING: More than one matching pattern found - picking one .. ---------------------------------------------------------------------- Ran 15 tests in 109.539s OK ........ ---------------------------------------------------------------------- Ran 8 tests in 0.666s OK ....[05:18:59] WARNING: not removing hydrogen atom without neighbors [05:18:59] WARNING: not removing hydrogen atom without neighbors [05:18:59] WARNING: not removing hydrogen atom without neighbors ....... ---------------------------------------------------------------------- Ran 11 tests in 20.995s OK .... ---------------------------------------------------------------------- Ran 4 tests in 7.399s OK ...... ---------------------------------------------------------------------- Ran 6 tests in 1.736s OK ...............s/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/PandasTools.py:394: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. if (np.issubdtype(df.dtypes[dt], float) or np.issubdtype(df.dtypes[dt], int)) /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/PandasTools.py:394: FutureWarning: Conversion of the second argument of issubdtype from `int` to `np.signedinteger` is deprecated. In future, it will be treated as `np.int64 == np.dtype(int).type`. if (np.issubdtype(df.dtypes[dt], float) or np.issubdtype(df.dtypes[dt], int)) ./build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/PandasTools.py:414: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`. if np.issubdtype(type(cell_value), float): ....... ---------------------------------------------------------------------- Ran 24 tests in 22.538s OK (skipped=1) .. ---------------------------------------------------------------------- Ran 2 tests in 0.000s OK UnitTestDocTestsChem.py:5: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead. from rdkit.Chem import MCS, FragmentMatcher, MACCSkeys, Descriptors, TemplateAlign ../build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/rdkit/Chem/MCS.py:1: DeprecationWarning: The rdkit.Chem.MCS module is deprecated; please use rdkit.Chem.rdFMCS instead. # This work was funded by Roche and generously donated to the free ............[05:20:33] WARNING: More than one matching pattern found - picking one [05:20:33] WARNING: More than one matching pattern found - picking one ........... ---------------------------------------------------------------------- Ran 25 tests in 51.483s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.353s OK ..s... ---------------------------------------------------------------------- Ran 6 tests in 5.336s OK (skipped=1) .[05:20:43] WARNING: not removing hydrogen atom without neighbors .[05:20:43] WARNING: not removing hydrogen atom without neighbors .[05:20:43] WARNING: no name column found on line 1 [05:20:44] WARNING: no name column found on line 2 [05:20:44] WARNING: no name column found on line 3 [05:20:44] WARNING: no name column found on line 4 [05:20:44] WARNING: no name column found on line 5 [05:20:44] WARNING: no name column found on line 6 [05:20:44] WARNING: no name column found on line 7 [05:20:44] WARNING: no name column found on line 8 [05:20:44] WARNING: no name column found on line 9 [05:20:44] WARNING: no name column found on line 10 [05:20:44] WARNING: no name column found on line 11 [05:20:44] WARNING: no name column found on line 12 [05:20:44] WARNING: no name column found on line 13 [05:20:44] WARNING: no name column found on line 14 [05:20:44] WARNING: no name column found on line 15 [05:20:44] WARNING: no name column found on line 16 [05:20:44] WARNING: no name column found on line 17 [05:20:44] WARNING: no name column found on line 18 [05:20:44] WARNING: no name column found on line 19 [05:20:44] WARNING: no name column found on line 20 [05:20:44] WARNING: no name column found on line 21 [05:20:44] WARNING: no name column found on line 22 [05:20:44] WARNING: no name column found on line 23 [05:20:44] WARNING: no name column found on line 24 [05:20:44] WARNING: no name column found on line 25 [05:20:44] WARNING: no name column found on line 26 [05:20:44] WARNING: no name column found on line 27 [05:20:44] WARNING: no name column found on line 28 [05:20:44] WARNING: no name column found on line 29 [05:20:44] WARNING: no name column found on line 30 [05:20:44] WARNING: no name column found on line 31 [05:20:44] WARNING: no name column found on line 32 [05:20:44] WARNING: no name column found on line 33 [05:20:44] WARNING: no name column found on line 34 [05:20:44] WARNING: no name column found on line 35 [05:20:44] WARNING: no name column found on line 36 [05:20:44] WARNING: no name column found on line 37 [05:20:44] WARNING: no name column found on line 38 [05:20:44] WARNING: no name column found on line 39 [05:20:44] WARNING: no name column found on line 40 [05:20:44] WARNING: no name column found on line 41 [05:20:44] WARNING: no name column found on line 42 [05:20:44] WARNING: no name column found on line 43 [05:20:44] WARNING: no name column found on line 44 [05:20:44] WARNING: no name column found on line 45 [05:20:44] WARNING: no name column found on line 46 [05:20:44] WARNING: no name column found on line 47 [05:20:44] WARNING: no name column found on line 48 [05:20:44] WARNING: no name column found on line 49 [05:20:44] WARNING: no name column found on line 50 [05:20:44] WARNING: no name column found on line 51 [05:20:44] WARNING: no name column found on line 52 [05:20:44] WARNING: no name column found on line 53 [05:20:44] WARNING: no name column found on line 54 [05:20:44] WARNING: no name column found on line 55 [05:20:44] WARNING: no name column found on line 56 [05:20:44] WARNING: no name column found on line 57 [05:20:44] WARNING: no name column found on line 58 [05:20:44] WARNING: no name column found on line 59 [05:20:44] WARNING: no name column found on line 60 [05:20:44] WARNING: no name column found on line 61 [05:20:44] WARNING: no name column found on line 62 [05:20:44] WARNING: no name column found on line 63 [05:20:44] WARNING: no name column found on line 64 [05:20:44] WARNING: no name column found on line 65 [05:20:44] WARNING: no name column found on line 66 [05:20:44] WARNING: no name column found on line 67 [05:20:44] WARNING: no name column found on line 68 [05:20:44] WARNING: no name column found on line 69 [05:20:44] WARNING: no name column found on line 70 [05:20:44] WARNING: no name column found on line 71 [05:20:44] WARNING: no name column found on line 72 [05:20:44] WARNING: no name column found on line 73 [05:20:44] WARNING: no name column found on line 74 [05:20:44] WARNING: no name column found on line 75 [05:20:44] WARNING: no name column found on line 76 [05:20:44] WARNING: no name column found on line 77 [05:20:44] WARNING: no name column found on line 78 [05:20:44] WARNING: no name column found on line 79 [05:20:44] WARNING: no name column found on line 80 [05:20:44] WARNING: no name column found on line 81 [05:20:44] WARNING: no name column found on line 82 [05:20:44] WARNING: no name column found on line 83 [05:20:44] WARNING: no name column found on line 84 [05:20:44] WARNING: no name column found on line 85 [05:20:44] WARNING: no name column found on line 86 [05:20:44] WARNING: no name column found on line 87 [05:20:44] WARNING: no name column found on line 88 [05:20:44] WARNING: no name column found on line 89 [05:20:44] WARNING: no name column found on line 90 [05:20:44] WARNING: no name column found on line 91 [05:20:44] WARNING: no name column found on line 92 [05:20:44] WARNING: no name column found on line 93 [05:20:44] WARNING: no name column found on line 94 [05:20:44] WARNING: no name column found on line 95 [05:20:44] WARNING: no name column found on line 96 [05:20:44] WARNING: no name column found on line 97 [05:20:44] WARNING: no name column found on line 98 [05:20:44] WARNING: no name column found on line 99 [05:20:44] WARNING: no name column found on line 100 [05:20:44] WARNING: no name column found on line 101 [05:20:44] WARNING: no name column found on line 102 [05:20:44] WARNING: no name column found on line 103 [05:20:44] WARNING: no name column found on line 104 [05:20:44] WARNING: no name column found on line 105 [05:20:44] WARNING: no name column found on line 106 [05:20:44] WARNING: no name column found on line 107 [05:20:44] WARNING: no name column found on line 108 [05:20:44] WARNING: no name column found on line 109 [05:20:44] WARNING: no name column found on line 110 [05:20:44] WARNING: no name column found on line 111 [05:20:44] WARNING: no name column found on line 112 [05:20:44] WARNING: no name column found on line 113 [05:20:44] WARNING: no name column found on line 114 [05:20:44] WARNING: no name column found on line 115 [05:20:44] WARNING: no name column found on line 116 [05:20:44] WARNING: no name column found on line 117 [05:20:44] WARNING: no name column found on line 118 [05:20:44] WARNING: no name column found on line 119 [05:20:44] WARNING: no name column found on line 120 [05:20:44] WARNING: no name column found on line 121 [05:20:44] WARNING: no name column found on line 122 [05:20:44] WARNING: no name column found on line 123 [05:20:44] WARNING: no name column found on line 124 [05:20:44] WARNING: no name column found on line 125 [05:20:44] WARNING: no name column found on line 126 [05:20:44] WARNING: no name column found on line 127 [05:20:44] WARNING: no name column found on line 128 [05:20:44] WARNING: no name column found on line 129 [05:20:44] WARNING: no name column found on line 130 [05:20:44] WARNING: no name column found on line 131 [05:20:44] WARNING: no name column found on line 132 [05:20:44] WARNING: no name column found on line 133 [05:20:44] WARNING: no name column found on line 134 [05:20:44] WARNING: no name column found on line 135 [05:20:44] WARNING: no name column found on line 136 [05:20:44] WARNING: no name column found on line 137 [05:20:44] WARNING: no name column found on line 138 [05:20:44] WARNING: no name column found on line 139 [05:20:44] WARNING: no name column found on line 140 [05:20:44] WARNING: no name column found on line 141 [05:20:44] WARNING: no name column found on line 142 [05:20:44] WARNING: no name column found on line 143 [05:20:44] WARNING: no name column found on line 144 [05:20:44] WARNING: no name column found on line 145 [05:20:44] WARNING: no name column found on line 146 [05:20:44] WARNING: no name column found on line 147 [05:20:44] WARNING: no name column found on line 148 [05:20:44] WARNING: no name column found on line 149 [05:20:44] WARNING: no name column found on line 150 [05:20:44] WARNING: no name column found on line 151 [05:20:44] WARNING: no name column found on line 152 [05:20:44] WARNING: no name column found on line 153 [05:20:44] WARNING: no name column found on line 154 [05:20:44] WARNING: no name column found on line 155 [05:20:44] WARNING: no name column found on line 156 [05:20:44] WARNING: no name column found on line 157 [05:20:44] WARNING: no name column found on line 158 [05:20:44] WARNING: no name column found on line 159 [05:20:44] WARNING: no name column found on line 160 [05:20:44] WARNING: no name column found on line 161 [05:20:44] WARNING: no name column found on line 162 [05:20:44] WARNING: no name column found on line 163 [05:20:44] WARNING: no name column found on line 164 [05:20:44] WARNING: no name column found on line 165 [05:20:44] WARNING: no name column found on line 166 [05:20:44] WARNING: no name column found on line 167 [05:20:44] WARNING: no name column found on line 168 [05:20:44] WARNING: no name column found on line 169 [05:20:44] WARNING: no name column found on line 170 [05:20:44] WARNING: no name column found on line 171 [05:20:44] WARNING: no name column found on line 172 [05:20:44] WARNING: no name column found on line 173 [05:20:44] WARNING: no name column found on line 174 [05:20:44] WARNING: no name column found on line 175 [05:20:44] WARNING: no name column found on line 176 [05:20:44] WARNING: no name column found on line 177 [05:20:44] WARNING: no name column found on line 178 [05:20:44] WARNING: no name column found on line 179 [05:20:44] WARNING: no name column found on line 180 [05:20:44] WARNING: no name column found on line 181 [05:20:44] WARNING: no name column found on line 182 [05:20:44] WARNING: no name column found on line 183 [05:20:44] WARNING: no name column found on line 184 [05:20:44] WARNING: no name column found on line 185 [05:20:44] WARNING: no name column found on line 186 [05:20:44] WARNING: no name column found on line 187 [05:20:44] WARNING: no name column found on line 188 [05:20:44] WARNING: no name column found on line 189 [05:20:44] WARNING: no name column found on line 190 [05:20:44] WARNING: no name column found on line 191 [05:20:44] WARNING: no name column found on line 192 [05:20:44] WARNING: no name column found on line 193 [05:20:44] WARNING: no name column found on line 194 [05:20:44] WARNING: no name column found on line 195 [05:20:44] WARNING: no name column found on line 196 [05:20:44] WARNING: no name column found on line 197 [05:20:44] WARNING: no name column found on line 198 [05:20:44] WARNING: no name column found on line 199 [05:20:44] WARNING: no name column found on line 200 [05:20:44] WARNING: no name column found on line 201 [05:20:44] WARNING: no name column found on line 202 [05:20:44] WARNING: no name column found on line 203 [05:20:44] WARNING: no name column found on line 204 [05:20:44] WARNING: no name column found on line 205 [05:20:44] WARNING: no name column found on line 206 [05:20:44] WARNING: no name column found on line 207 [05:20:44] WARNING: no name column found on line 208 [05:20:44] WARNING: no name column found on line 209 [05:20:44] WARNING: no name column found on line 210 [05:20:44] WARNING: no name column found on line 211 [05:20:44] WARNING: no name column found on line 212 [05:20:44] WARNING: no name column found on line 213 [05:20:44] WARNING: no name column found on line 214 [05:20:44] WARNING: no name column found on line 215 [05:20:44] WARNING: no name column found on line 216 ...... ---------------------------------------------------------------------- Ran 9 tests in 0.722s OK .................. ---------------------------------------------------------------------- Ran 18 tests in 6.445s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.377s OK ........ ---------------------------------------------------------------------- Ran 8 tests in 0.247s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.133s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.070s OK . ---------------------------------------------------------------------- Ran 1 test in 0.351s OK ........ ---------------------------------------------------------------------- Ran 8 tests in 0.014s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.014s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.018s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.037s OK ....... ---------------------------------------------------------------------- Ran 7 tests in 0.077s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.088s OK .... ---------------------------------------------------------------------- Ran 4 tests in 21.443s OK .......... ---------------------------------------------------------------------- Ran 10 tests in 0.373s OK . ---------------------------------------------------------------------- Ran 1 test in 0.000s OK .......... ---------------------------------------------------------------------- Ran 10 tests in 0.011s OK ..... ---------------------------------------------------------------------- Ran 5 tests in 0.403s OK ..................... ---------------------------------------------------------------------- Ran 21 tests in 37.149s OK . ---------------------------------------------------------------------- Ran 1 test in 0.000s OK ...[05:22:19] **** Pre-condition Violation molecule has no conformers Violation occurred on line 37 in file ./Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp Failed Expression: dp_mol->getNumConformers() **** . ---------------------------------------------------------------------- Ran 4 tests in 0.102s OK .. ---------------------------------------------------------------------- Ran 2 tests in 85.839s OK .. ---------------------------------------------------------------------- Ran 2 tests in 0.343s OK ... ---------------------------------------------------------------------- Ran 3 tests in 0.034s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.047s OK .....[05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors [05:23:52] WARNING: not removing hydrogen atom without neighbors ..... ---------------------------------------------------------------------- Ran 10 tests in 2.024s OK ssssss.....s..... ---------------------------------------------------------------------- Ran 17 tests in 0.611s OK (skipped=7) s ---------------------------------------------------------------------- Ran 1 test in 0.000s OK (skipped=1) .......... ---------------------------------------------------------------------- Ran 10 tests in 5.307s OK ..[05:24:05] SMARTS Parse Error: syntax error for input: 'boromicacid' [05:24:05] SMARTS Parse Error: syntax error for input: 'carboxylicacid,acidchlroide' [05:24:05] SMARTS Parse Error: syntax error for input: 'carboxyliccaid,acidchloride' [05:24:05] reaction has no reactants [05:24:05] reaction has no products [05:24:05] initialization failed [05:24:05] reaction has no reactants [05:24:05] reaction has no products . ---------------------------------------------------------------------- Ran 3 tests in 0.150s OK .... ---------------------------------------------------------------------- Ran 4 tests in 0.049s OK !!! TEST FAILURE: python UnitTestMCS.py {} 99% tests passed, 1 tests failed out of 142 Total Test time (real) = 506.84 sec The following tests FAILED: 141 - pythonTestDirChem (Failed) Errors while running CTest make[2]: *** [Makefile:133: test] Error 8 make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' dh_auto_test: cd obj-x86_64-linux-gnu && make -j16 test ARGS\+=-j16 returned exit code 2 make[1]: [debian/rules:106: override_dh_auto_test] Error 2 (ignored) make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' fakeroot debian/rules binary dh binary --with python2 --buildsystem=cmake --parallel dh_testroot -O--buildsystem=cmake -O--parallel dh_prep -O--buildsystem=cmake -O--parallel dh_installdirs -O--buildsystem=cmake -O--parallel dh_auto_install -O--buildsystem=cmake -O--parallel cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/rdkit-201809.1\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/rdkit-201809.1+dfsg -B/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/catch /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/catch /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/External/INCHI-API && /usr/bin/cmake -E copy /build/rdkit-201809.1+dfsg/External/INCHI-API/python/noinchi.py /build/rdkit-201809.1+dfsg/rdkit/Chem/inchi.py make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'External/catch/CMakeFiles/catch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 0%] Built target catch make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend [ 0%] Built target inchi_support make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 1%] Built target hc make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/RDGeneral.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target RDGeneral make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/depend make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/depend make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/depend make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/depend make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/depend make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testRDValue.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDGeneral/CMakeFiles/testDict.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/CMakeFiles/testMatrices.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Query/CMakeFiles/testQuery.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testRDValue.dir/build.make Code/RDGeneral/CMakeFiles/testRDValue.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDGeneral/CMakeFiles/testDict.dir/build.make Code/RDGeneral/CMakeFiles/testDict.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build.make Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/CMakeFiles/testMatrices.dir/build.make Code/Numerics/CMakeFiles/testMatrices.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Query/CMakeFiles/testQuery.dir/build.make Code/Query/CMakeFiles/testQuery.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/CMakeFiles/RDBoost.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testRDValue.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/CMakeFiles/testMatCalc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDGeneral/CMakeFiles/testDict.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 3%] Built target RDBoost make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend [ 3%] Built target testRDValue [ 4%] Built target testMatCalc [ 5%] Built target testDict make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/CMakeFiles/testMatrices.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Query/CMakeFiles/testQuery.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --color= [ 5%] Built target testMatrices make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Catalogs/CMakeFiles/Catalogs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 6%] Built target testQuery [ 7%] Built target EigenSolvers [ 7%] Built target Catalogs [ 7%] Built target SimDivPickers make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/DataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 9%] Built target DataStructs make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/depend make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/depend make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/depend make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend [ 9%] Built target rdBase make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testDataStructs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testFPB.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/CMakeFiles/testMultiFPB.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/CMakeFiles/testSimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build [ 10%] Built target testSimDivPickers make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testFPB.dir/build.make Code/DataStructs/CMakeFiles/testFPB.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testMultiFPB.dir/build.make Code/DataStructs/CMakeFiles/testMultiFPB.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/CMakeFiles/testDataStructs.dir/build.make Code/DataStructs/CMakeFiles/testDataStructs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testFPB.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 11%] Built target testFPB make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testMultiFPB.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 12%] Built target InfoTheory make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/CMakeFiles/testDataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend [ 13%] Built target testMultiFPB [ 14%] Built target testDataStructs make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/RDGeometryLib.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 15%] Built target RDGeometryLib make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/depend make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/depend make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/CMakeFiles/testGrid.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 15%] Built target Clustering make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testGrid.dir/build.make Code/Geometry/CMakeFiles/testGrid.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/CMakeFiles/testTransforms.dir/build.make Code/Geometry/CMakeFiles/testTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testGrid.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/CMakeFiles/testTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 15%] Built target testGrid [ 16%] Built target testTransforms [ 16%] Built target ChemicalFeatures make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/depend [ 16%] Built target Alignment make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/depend make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 17%] Built target rdGeometry make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 17%] Built target rdMetricMatrixCalc make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 18%] Built target rdSimDivPickers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/CMakeFiles/testChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build [ 18%] Built target testChemicalFeatures make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/CMakeFiles/testAlignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 18%] Built target testAlignment [ 20%] Built target cDataStructs make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/Data/CMakeFiles/cQuantize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Built target cQuantize make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 20%] Built target rdInfoTheory make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/GraphMol.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target GraphMol make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend [ 25%] Built target rdAlignment make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target Trajectory make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target PartialCharges make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 25%] Built target MolInterchange make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake --color= [ 25%] Built target MolTransforms make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 26%] Built target MolCatalog make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake --color= [ 26%] Built target Subgraphs [ 26%] Built target SubstructMatch make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake --color= [ 26%] Built target rdChemicalFeatures [ 27%] Built target rdqueries [ 28%] Built target SLNParse make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 30%] Built target SmilesParse make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/depend make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/depend make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/depend make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/DependInfo.cmake --color= [ 31%] Built target Optimizer make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/test-valgrind.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolIterTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolcpTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 31%] Built target rdtrajectory make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/test-valgrind.dir/build.make Code/GraphMol/CMakeFiles/test-valgrind.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Built target rdPartialCharges make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 32%] Built target rdMolInterchange make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 33%] Built target ShapeHelpers make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 34%] Built target Depictor make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest2.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolcpTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMemTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 35%] Built target smiTest2 make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolIterTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolqueryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestCanon.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 35%] Built target graphmolcpTest make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build [ 35%] Built target graphmolMemTest1 make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend [ 36%] Built target graphmolIterTest make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/depend [ 37%] Built target graphmolqueryTest make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/test-valgrind.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smaTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake --color= [ 37%] Built target graphmoltestCanon make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake --color= [ 38%] Built target test-valgrind make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend [ 38%] Built target smaTest1 make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --color= [ 39%] Built target ChemTransforms make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 40%] Built target FilterCatalog make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build [ 40%] Built target testSubgraphs1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/Numerics/Optimizer/CMakeFiles/testOptimizer.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Subgraphs/CMakeFiles/testSubgraphs2.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 40%] Built target testOptimizer [ 41%] Built target testSubgraphs2 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 41%] Built target rdMolTransforms make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/PartialCharges/CMakeFiles/testPartialCharges.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 41%] Built target testPartialCharges make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SLNParse/CMakeFiles/testSLNParse.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 42%] Built target rdSLNParse [ 42%] Built target ReducedGraphs make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/depend make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend [ 43%] Built target testSLNParse [ 45%] Built target Fingerprints make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --color= [ 46%] Built target MolChemicalFeatures make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 47%] Built target FragCatalog make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 50%] Built target FileParsers make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/depend make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/depend make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/depend make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/CMakeFiles/ForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/molBundleTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/hanoiTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build [ 54%] Built target ForceField make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/CMakeFiles/testReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 54%] Built target testReducedGraphs make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend [ 54%] Built target rdShapeHelpers make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 55%] Built target SubstructLibrary make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/depend [ 55%] Built target rdFingerprintGenerator make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/DependInfo.cmake --color= [ 56%] Built target rdMolChemicalFeatures make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build.make Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/hanoiTest.dir/build.make Code/GraphMol/CMakeFiles/hanoiTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/molBundleTest.dir/build.make Code/GraphMol/CMakeFiles/molBundleTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build.make Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build.make Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build.make Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build [ 58%] Built target rdchem make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/hanoiTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/resMolSupplierTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/molBundleTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 58%] Built target hanoiTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestChirality.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 59%] Built target resMolSupplierTest make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/depend [ 59%] Built target molBundleTest make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTestsCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 59%] Built target graphmoltestChirality make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolMolOpsTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 59%] Built target graphmolTestsCatch make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPickler.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmoltestPicklerGlobalSetting.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/DependInfo.cmake --color= [ 59%] Built target graphmolMolOpsTest make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/depend [ 60%] Built target graphmoltestPickler make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/depend [ 60%] Built target graphmoltestPicklerGlobalSetting make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend [ 60%] Built target rdReducedGraphs make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --color= [ 60%] Built target smiTest1 make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/CMakeFiles/testDepictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/DependInfo.cmake --color= [ 60%] Built target testDepictor make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/cxsmilesTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SmilesParse/CMakeFiles/smiTestCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake --color= [ 60%] Built target cxsmilesTest make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/depend [ 60%] Built target smiTestCatch make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMol2ToMol.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Built target testMol2ToMol make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testExtendedStereoParsing.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 60%] Built target testExtendedStereoParsing make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersCatchTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolWriter.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target fileParsersCatchTest make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testTplParser.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testMolSupplier.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 61%] Built target testMolWriter make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/depend [ 61%] Built target testTplParser make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/DependInfo.cmake --color= [ 62%] Built target testMolSupplier make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/testSequence.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/DependInfo.cmake --color= [ 62%] Built target testSequence make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FileParsers/CMakeFiles/fileParsersTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemTransforms/CMakeFiles/testChemTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 62%] Built target fileParsersTest1 make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Substruct/CMakeFiles/testSubstructMatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target testChemTransforms make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/depend [ 63%] Built target testSubstructMatch make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 63%] Built target rdDepictor make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/CMakeFiles/filterCatalogTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/DependInfo.cmake --color= [ 63%] Built target filterCatalogTest make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build [ 64%] Built target rdfiltercatalog make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/CMakeFiles/testFragCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprints.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 64%] Built target testFragCatalog make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build [ 65%] Built target testFingerprints make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 67%] Built target Descriptors make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/depend make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target rdfragcatalog make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Fingerprints/CMakeFiles/testFingerprintGenerators.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target testFingerprintGenerators make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolTransforms/CMakeFiles/testMolTransforms.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --color= [ 68%] Built target testMolTransforms make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolChemicalFeatures/CMakeFiles/testFeatures.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target testFeatures make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 68%] Built target MMPA make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/depend make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend [ 69%] Built target rdMolCatalog make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolCatalog/CMakeFiles/testMolCatalog.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolInterchange/CMakeFiles/molInterchangeTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build [ 69%] Built target testMolCatalog make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/CMakeFiles/substructLibraryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 69%] Built target molInterchangeTest1 [ 69%] Built target substructLibraryTest [ 69%] Built target FMCS make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/depend make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/depend make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend [ 69%] Built target rdSubstructLibrary make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 71%] Built target rdmolfiles make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testDescriptors.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MMPA/CMakeFiles/testMMPA.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 72%] Built target ForceFieldHelpers [ 72%] Built target rdMolDescriptors make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/depend make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/depend [ 72%] Built target testMMPA make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend [ 73%] Built target rdMMPA [ 73%] Built target testDescriptors make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake --color= cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --color= make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/CMakeFiles/graphmolTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build.make Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/CMakeFiles/graphmolTest1.dir/build.make Code/GraphMol/CMakeFiles/graphmolTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/UFF/CMakeFiles/testUFFForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 73%] Built target MolAlign make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/CMakeFiles/graphmolTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/DistGeometry.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --color= [ 73%] Built target testUFFForceField [ 74%] Built target rdForceField make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Trajectory/CMakeFiles/trajectoryTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 74%] Built target DistGeometry make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/depend make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend [ 75%] Built target graphmolTest1 make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/CMakeFiles/testDistGeom.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --color= [ 75%] Built target rdForceFieldHelpers [ 76%] Built target trajectoryTest make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/CMakeFiles/testDistGeom.dir/build.make Code/DistGeom/CMakeFiles/testDistGeom.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/CMakeFiles/testDistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ShapeHelpers/CMakeFiles/testShapeHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target testDistGeom make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 76%] Built target testShapeHelpers [ 77%] Built target DistGeomHelpers [ 77%] Built target rdMolAlign make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/depend [ 77%] Built target DistGeom make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/depend make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/DependInfo.cmake --color= make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/DependInfo.cmake --color= make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build.make Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build.make Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build [ 77%] Built target RGroupDecomposition make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/depend make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/MMFF/CMakeFiles/testMMFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/ForceField/MMFF/CMakeFiles/testMMFFForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 77%] Built target testMMFFForceFieldHelpers make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build [ 78%] Built target testMMFFForceField make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/UFF/CMakeFiles/testUFFForceFieldHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ForceFieldHelpers/CrystalFF/CMakeFiles/testCrystalForceField.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/CMakeFiles/testDistGeomHelpers.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 78%] Built target testUFFForceFieldHelpers make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolAlign/CMakeFiles/testMolAlign.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/CMakeFiles/testRGroupDecomp.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake --color= [ 78%] Built target testCrystalForceField [ 78%] Built target testDistGeomHelpers [ 79%] Built target testMolAlign [ 79%] Built target testRGroupDecomp make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build [ 80%] Built target rdDistGeom make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 80%] Built target rdRGroupDecomposition [ 80%] Built target rdFMCS make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Descriptors/CMakeFiles/testAUTOCORR2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build make -f Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build.make Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/CMakeFiles/testFMCS.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/FMCS/Test/CMakeFiles/FMCStest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 81%] Built target MolHash make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/depend [ 81%] Built target testFMCS make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/StructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 82%] Built target FMCStest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 84%] Built target StructChecker make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/depend [ 84%] Built target testAUTOCORR2D make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/depend [ 87%] Built target ChemReactions make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/depend make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/depend make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build.make Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build.make Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/CMakeFiles/testMolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 87%] Built target testMolHash make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target rdMolHash make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/Wrap/CMakeFiles/rdStructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target rdStructChecker make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/StructChecker/CMakeFiles/testStructChecker.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/rxnTestCatch.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target testStructChecker make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReaction.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 88%] Built target rxnTestCatch make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testReactionFingerprints.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 89%] Built target testReaction [ 89%] Built target testReactionFingerprints make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/CMakeFiles/testEnumeration.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 90%] Built target testEnumeration [ 90%] Built target MolDraw2D make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/depend make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/depend make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 91%] Built target rdChemReactions make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 95%] Built target MolStandardize make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/depend make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/depend make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' cd /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/rdkit-201809.1+dfsg /build/rdkit-201809.1+dfsg/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DRxnTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolDraw2D/CMakeFiles/moldraw2DTest1.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build make -f Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build [ 96%] Built target moldraw2DTest1 make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molValidateTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molTautomerTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molChargeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molFragmentTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molNormalizeTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/CMakeFiles/molStandardizeSmallTest.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [ 96%] Built target molStandardizeTest [ 97%] Built target molNormalizeTest [ 98%] Built target molChargeTest [ 98%] Built target molValidateTest [ 98%] Built target rdMolDraw2D [ 98%] Built target moldraw2DRxnTest1 [ 99%] Built target molTautomerTest [100%] Built target rdMolStandardize [100%] Built target molFragmentTest [100%] Built target molStandardizeSmallTest make[3]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build'. make[3]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' [100%] Built target rdmolops make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-targets-none.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test3.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test2.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/test1.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/spiral.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/retest.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/listutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/fileutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/comhack.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw_qax.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/chemdraw.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/cactvs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/utils/12h.gif -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/utils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.ps -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.pyc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.pyc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/testallps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pstests.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/pidtest.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/tests/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/stringformat.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pid.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/pagesizes.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/colors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWxDc.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/pidWX.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/WX/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/pidTK.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/TK/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/SVG/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/pidQt.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Qt/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/psmetrics.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/pidPS.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/fontinfo.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PS/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/removemedium.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/pidPIL.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PIL/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pidPDF.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfutils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfmetrics.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgeom.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfgen.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/pdfdoc.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/sping/PDF/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/six.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/_py2_pickle.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Transform.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Supply.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Output.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Node.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/VLib/Filter.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/TestRunner.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDRandom.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDLogger.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDConfig.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/files.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ScreenComposite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/SLT -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/SLT/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/SLT/Risk.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/architecture.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/Trainers.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/Network.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/NetNode.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/CrossValidate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Neural/ActFuncs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/CrossValidate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/NaiveBayes/ClassificationModel.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage/Packager.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/ModelPackage/PackageUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MatOps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/KNNRegressionModel.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/KNNModel.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/KNNClassificationModel.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/DistFunctions.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/KNN/CrossValidate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/GrowComposite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/EnrichPlot.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Parser.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/randomtest.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/TreeVis.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/TreeUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/Tree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/SigTree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/QuantTree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/PruneTree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/ID3.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/Forest.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/DecTree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/CrossValidate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildSigTree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/DecTree/BuildQuantTree.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/Transforms.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/Stats.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/SplitData.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/Quantize.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/MLData.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/FindQuantBounds.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/DataUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/CompositeRun.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/Composite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/BayesComposite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Composite/AdjustComposite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Resemblance.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Butina.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/BuildComposite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/AnalyzeComposite.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/StorageUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbResultSet.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbReport.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbModule.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbInfo.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Dbase/DbConnection.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/VectCollection.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/TopNContainer.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/LazySignature.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/HierarchyVis.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitEnsembleDb.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/BitEnsemble.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/inchi.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs/fmcs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs/fmcs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/fmcs/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/TorsionFingerprints.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/TemplateAlign.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/MolSupplier.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/testCombined.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeObjects.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/SubshapeAligner.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Subshape/BuilderUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SimpleEnum/Enumerator.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ShowMols.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SaltRemover.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/SATIS.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ReducedGraphs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Recap.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Randomize.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/QED.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PyMol.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PropertyMol.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm3D/EmbedLib.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Utils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/SigFactory.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Matcher.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/LazyGenerator.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Pharm2D/Generate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PeriodicTable.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/PandasTools.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolSurf.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/validations.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/validate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/utils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/tautomer.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/standardize.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/resonance.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/normalize.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/metal.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/fragment.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/errors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/charge.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey/MolKey.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolKey/InchiInfo.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader_sa.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader_orig.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/Loader.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolDb/FingerprintUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolCatalog.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MCS.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MACCSkeys.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Lipinski.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Graphs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/GraphDescriptors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FunctionalGroups.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fragments.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FragmentMatcher.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FragmentCatalog.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fraggle/FraggleSim.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Fingerprints/ClusterMols.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FilterCatalog.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/ShowFeats.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMaps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatMaps/FeatMapParser.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FeatFinderCLI.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/FastSDMolSupplier.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EnumerateStereoisomers.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EnumerateHeterocycles.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/Fingerprinter.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/EState_VSA.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/EState.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/EState/AtomTypes.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/spingCanvas.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/qtCanvas.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/mplCanvas.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/canvasbase.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/cairoCanvas.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/aggCanvas.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/SimilarityMaps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/MolDrawing.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/IPythonConsole.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/FreeSans.ttf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Descriptors3D.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Descriptors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/DSViewer.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Crippen.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemicalForceFields.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemicalFeatures.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/TemplateExpand.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/SDFToCSV.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/BulkTester.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/ChemUtils/AlignDepict.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/BuildFragmentCatalog.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/BRICS.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Utils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Torsions.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Sheridan.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AtomPairs/Pairs.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/AllChem.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Avalon/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/struchk -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.trn -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.opt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/struchk/checkfgs.chk -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/rddata.sql -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Salts.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/RDTests.sqlt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/RDData.sqlt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains/wehi_pains.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains/test_data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains/test_data/wehi_mols.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains/test_data/test_set3.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains/test_data/run_tests.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Pains/README.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/NCI -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/NCI/first_5k.tpsa.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/NCI/first_5K.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/NCI/first_200.tpsa.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/NCI/first_200.props.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/MolStandardize -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/MolStandardize/tautomerTransforms.in -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/MolStandardize/normalizations.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/MolStandardize/fragmentPatterns.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/MolStandardize/acid_base_pairs2.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/MolStandardize/acid_base_pairs.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/FunctionalGroups.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/FragmentDescriptors.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/DTDs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/DTDs/validate.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Model.dtd -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/DTDs/RD_Dataset.dtd -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/Crippen.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Data/BaseFeatures.fdef -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/RD.css -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/compounds.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/wiki -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.lrg.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.inkscape.svg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Images/logo.ai -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/EnhancedStereo.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/CodingStandards.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/conf.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.comhack.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw_qax.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.six.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.demo.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.ScreenComposite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.NetNode.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.CrossValidate.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.ActFuncs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.CrossValidate.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.ClassificationModel.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.Packager.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.PackageUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNRegressionModel.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNModel.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNClassificationModel.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.DistFunctions.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.CrossValidate.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.GrowComposite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.EnrichPlot.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.randomtest.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeVis.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.Tree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.SigTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.QuantTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.PruneTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.ID3.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.Forest.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.DecTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.CrossValidate.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildSigTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildQuantTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.CompositeRun.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.Composite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.BayesComposite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.AdjustComposite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.murtagh_test.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.BuildComposite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ML.AnalyzeComposite.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbReport.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.HierarchyVis.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdStructChecker.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.testCombined.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.ScaffoldTree.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.LazyGenerator.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MCS.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.qtCanvas.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.mplCanvas.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.canvasbase.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.cairoCanvas.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.aggCanvas.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.DSViewer.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/source/modules.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/index.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_rf.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/similarity_map_charges.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_9.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_8.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_7.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_6.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_5.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_4.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_3.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_2.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_12.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_11.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_10.jpg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_1.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/picture_0.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/indole1.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol2.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/images/cdk2_mol1.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/exts -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/exts/extapi.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.train.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/solubility.test.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/invalid.mol -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/input.mol -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/chiral.mol -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/cdk2.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/bzr.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/AmideBond.rxn -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/api-docs.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/RDKit_Book.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Overview.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Makefile -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Install.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInPython.rst -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/GettingStartedInC++.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Cookbook.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/Cartridge.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example9.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example8.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example7.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example6.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example5.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example4.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example3.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example2.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example16.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example15.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example14.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example13.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example12.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example11.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example10.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/example1.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc/readme.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/pzc/p_con.html -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/test_rfrag.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/test_list.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/search_mmp_db.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/rfrag.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/mol_transform.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/indexing.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/simple.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smirks.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/data/sample.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/create_mmp_db.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/cansmirk.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/mmpa/README.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/readme.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/rdkit_tversky.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/fraggle.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/query.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/cxn_tversky.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/fraggle/atomcontrib.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/data/zim.100.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/SA_Score/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/utils.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/__init__.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/RxnRoleAssignment/README.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/testData -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/testData/egfr.out -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/pbf.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/demo.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/PBFRDKit.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/PBF/Makefile -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/NP_Score -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/NP_Score/publicnp.model.gz -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/NP_Score/npscorer.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/NP_Score/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/MolVS -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/MolVS/molvs_cli.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/M_Kossner -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/Frames.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/README.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePredict.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/DistancePlot.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/CreateFps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/ClusterFps.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/LEF/AddLabels.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/IFG -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/IFG/ifg.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/IFG/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Glare -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Glare/glare.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Glare/README.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/converted.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fp.tsv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/fastcluster.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/clustered.tsv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/centroid.tsv -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/cdk2.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/Fastcluster/README.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test_list.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/test_list.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/README.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/ChiralPairs/ChiralDescriptors.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/CMakeLists.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/AtomAtomSimilarity -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Descriptors.sqlt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Fingerprints.sqlt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/AtomPairs.sqlt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/Compounds.sqlt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr/loadErrors.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.sdf -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/bzr.2.smi -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/testData/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/TestDbCLI.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/SearchDb.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Projects/DbCLI/CreateDb.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Scripts -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Scripts/create_deb_packages.sh -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Scripts/README.md -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Scripts/PythonFormat.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/Scripts/FeatFinderCLI.py -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/README -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/share/RDKit/license.txt -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeneral.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeneral.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeneral.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Exceptions.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BadFileException.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Dict.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/FileParseException.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Invariant.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDAny.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDValue.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDLog.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDProps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDThreads.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/StreamOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/types.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/utils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/versions.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/RDConfig.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/Ranking.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/export.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/test.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash_fwd.hpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/hash.hpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/extensions.hpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/hash_float.hpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDGeneral/hash/hash/detail/float_functions.hpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDBoost.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDBoost.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDBoost.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/Wrap.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/python.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/boost_numpy.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/RDBoost/python_streambuf.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/rdBase.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDataStructs.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDataStructs.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDataStructs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/base64.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitVect.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitVects.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DatastructsException.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/FPBReader.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeometryLib.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeometryLib.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRDGeometryLib.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/Grid3D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/GridUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/point.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/Transform2D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/Transform3D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/Transform.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Geometry/Utils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Matrix.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/SquareMatrix.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/SymmMatrix.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Vector.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitAlignment.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitAlignment.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitAlignment.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitEigenSolvers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitEigenSolvers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitEigenSolvers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitOptimizer.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitOptimizer.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitOptimizer.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceField.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceField.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceField.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/Contrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/ForceField.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Params.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ForceField/MMFF/Params.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeometry.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralSet.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitCatalogs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/Catalog.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Catalogs/CatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitGraphMol.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Atom.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/atomic_data.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/AtomIterators.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Bond.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/BondIterators.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Canon.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Chirality.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Conformer.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/details.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/GraphMol.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolPickler.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryAtom.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryBond.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/QueryOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RDKitBase.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Resonance.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RingInfo.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Rings.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ROMol.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RWMol.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SanitException.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StereoGroup.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/new_canon.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolBundle.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDepictor.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDepictor.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDepictor.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSmilesParse.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSmilesParse.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSmilesParse.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFileParsers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructMatch.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructMatch.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructMatch.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemReactions.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemReactions.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemReactions.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/Enumerate.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/EnumerateBase.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/EnumerationPickler.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/EnumerationStrategyBase.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/CartesianProduct.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/RandomSample.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemReactions/RandomSampleAllBBs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemTransforms.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemTransforms.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemTransforms.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubgraphs.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubgraphs.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubgraphs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFilterCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFragCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDescriptors.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDescriptors.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDescriptors.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFingerprints.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitPartialCharges.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolTransforms.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitForceFieldHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitDistGeomHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolAlign.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolAlign.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolAlign.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolChemicalFeatures.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitShapeHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolDraw2D/MolDraw2DDetails.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolDraw2D.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolDraw2D.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolDraw2D.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFMCS.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFMCS.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitFMCS.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/Seed.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SeedSet.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MatchTable.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/RingMatchTableSet.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructureCache.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/SubstructMatchCustom.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/FMCS/MaximumCommonSubgraph.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolHash.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMMPA.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMMPA.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMMPA.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitStructChecker.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitStructChecker.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitStructChecker.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/StructChecker.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Utilites.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Pattern.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Stereo.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/StripSmallFragments.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/ReCharge.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/StructChecker/Tautomer.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitReducedGraphs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitTrajectory.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSubstructLibrary.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitRGroupDecomposition.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolInterchange.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolInterchange.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolInterchange.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSLNParse.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSLNParse.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSLNParse.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitMolStandardize.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/FragmentCatalogUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalogUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TransformCatalogUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogEntry.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogParams.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/GraphMol/MolStandardize/TautomerCatalogUtils.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/AndQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/EqualityQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/GreaterQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/LessEqualQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/LessQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/OrQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/Query.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/QueryObjects.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/RangeQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/SetQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Query/XOrQuery.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/Features/Feature.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSimDivPickers.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSimDivPickers.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitSimDivPickers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKithc.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKithc.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKithc.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitInfoTheory.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitInfoTheory.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitInfoTheory.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemicalFeatures.so.1.2018.09.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemicalFeatures.so.1 -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/libRDKitChemicalFeatures.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.so -- Installing: /build/rdkit-201809.1+dfsg/debian/tmp/usr/lib/python2.7/dist-packages/rdkit/RDPaths.py make[1]: Leaving directory '/build/rdkit-201809.1+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_numpy dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. dh_missing: usr/share/RDKit/license.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/README exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/FeatFinderCLI.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/PythonFormat.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/README.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Scripts/create_deb_packages.sh exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/RD.css exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/Descriptors/Correlations/README exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/BackwardsIncompatibleChanges.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/Cartridge.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/Cookbook.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/GettingStartedInC++.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/GettingStartedInPython.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/Install.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/Makefile exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/Overview.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/RDKit_Book.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/api-docs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/index.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/conf.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/CMakeLists.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example1.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example10.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example11.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example12.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example13.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example14.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example15.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example16.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example2.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example3.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example4.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example5.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example6.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example7.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example8.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/C++Examples/example9.cpp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/5ht3ligs.sdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/AmideBond.rxn exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/MinimalFeatures.fdef exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/actives_5ht3.sdf.gz exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/bzr.sdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/bzr.smi exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/cdk2.sdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/chiral.mol exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/input.mol exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/invalid.mol exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/solubility.test.sdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/data/solubility.train.sdf exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/exts/extapi.py exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_mol1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_mol2.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_molgrid.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/indole1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/mfp2_bit872.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_0.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_10.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_10.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_11.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_12.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_2.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_3.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_4.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_5.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_6.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_7.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_8.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/picture_9.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/rdk_bit1553.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/rdk_bit1553_2.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_charges.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_crippen.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_fp1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_fp2.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_fp3.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/images/similarity_map_rf.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/modules.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Avalon.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.DSViewer.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.aggCanvas.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.cairoCanvas.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.canvasbase.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.mplCanvas.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.qtCanvas.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EState.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Features.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MCS.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.LazyGenerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.QED.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.ScaffoldTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Subshape.testCombined.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdStructChecker.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Chem.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataManip.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.HierarchyVis.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DataStructs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbReport.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Dbase.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ForceField.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Geometry.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.AnalyzeComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.BuildComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.murtagh_test.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.AdjustComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.BayesComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.Composite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Composite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.CompositeRun.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Data.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildQuantTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildSigTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.DecTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.Forest.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.ID3.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.PruneTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.QuantTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.SigTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.Tree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeVis.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.randomtest.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.DecTree.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.EnrichPlot.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.GrowComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.DistFunctions.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNClassificationModel.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNModel.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNRegressionModel.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.KNN.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.PackageUtils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.Packager.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.ClassificationModel.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.ActFuncs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.CrossValidate.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.NetNode.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Neural.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.SLT.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.ScreenComposite.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.files.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.ML.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.Numerics.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDConfig.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDLogger.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDPaths.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.RDRandom.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.TestRunner.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Node.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.demo.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Output.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.VLib.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.six.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemdraw_qax.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.comhack.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.listutils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Book/source/rdkit.utils.spiral.rst exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/CodingStandards.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/EnhancedStereo.md exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/FragmentCatalogs.html exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.ai exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.lrg.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo_plain.inkscape.svg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/logo_plain.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Images/wiki/morganfp_atomenv1.png exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/MolStandardize.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Notebooks/compounds.txt exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddPoints-shot3.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/AddingPoints.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/BuildingBoundsMatrix.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/EditingMolecules.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ExploringHits.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FDefFile.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/FindingMappings.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GeneratingStructures.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/GettingStarted.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Icon.ico exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ImproveAlignments.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Index.hhk exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Intro.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MatchingPharmacophores.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/MethodOverview.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RD.css exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D-Splash.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhc exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/RDPharm3D.hhp exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/References.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot1.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Refine-shot2.jpg exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/SavingResults.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ScoringAlignments.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/Using.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/ViewOptions.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/contents.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/RDKit/Docs/Programs/RDPharm3D/index.htm exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-config-version.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-config.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-targets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/rdkit/rdkit-targets.cmake exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: librdkit-dev (47), librdkit1 (92), postgresql-11-rdkit (0), python-rdkit (1), rdkit-data (3), rdkit-doc (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed mkdir -p /build/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ cp /build/rdkit-201809.1+dfsg/Docs/Book/_build/latex/RDKit.pdf /build/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ cp -a /build/rdkit-201809.1+dfsg/Docs/Book/_build/html /build/rdkit-201809.1+dfsg/debian/rdkit-doc/usr/share/doc/rdkit/ pg_buildext install /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit build-%v postgresql-%v-rdkit ### install 11 ### make[2]: Entering directory '/build/rdkit-201809.1+dfsg/build-11' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension' /usr/bin/install -c -m 755 rdkit.so '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/rdkit.so' /usr/bin/install -c -m 644 /build/rdkit-201809.1+dfsg/Code/PgSQL/rdkit/rdkit.control '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension/' /usr/bin/install -c -m 644 rdkit--3.7.sql '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/share/postgresql/11/extension/' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode/rdkit' /bin/mkdir -p '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/ /usr/bin/install -c -m 644 rdkit_io.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 mol_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 sfp_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 rxn_op.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 rdkit_gist.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_gist.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bfp_gin.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 low_gist.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 guc.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 cache.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 adapter.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ /usr/bin/install -c -m 644 bitstring.bc '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode'/rdkit/./ cd '/build/rdkit-201809.1+dfsg/debian/postgresql-11-rdkit/usr/lib/postgresql/11/lib/bitcode' && /usr/lib/llvm-7/bin/llvm-lto -thinlto -thinlto-action=thinlink -o rdkit.index.bc rdkit/rdkit_io.bc rdkit/mol_op.bc rdkit/bfp_op.bc rdkit/sfp_op.bc rdkit/rxn_op.bc rdkit/rdkit_gist.bc rdkit/bfp_gist.bc rdkit/bfp_gin.bc rdkit/low_gist.bc rdkit/guc.bc rdkit/cache.bc rdkit/adapter.bc rdkit/bitstring.bc make[2]: Leaving directory '/build/rdkit-201809.1+dfsg/build-11' make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' dh_installdocs -O--buildsystem=cmake -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_installchangelogs ReleaseNotes.md make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' debian/rules override_dh_python2 make[1]: Entering directory '/build/rdkit-201809.1+dfsg' dh_python2 -ppython-rdkit I: dh_python2 fs:343: renaming rdBase.so to rdBase.x86_64-linux-gnu.so /usr/share/dh-python/dh_python2:67: DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead 'libpython%s: %s', so_version, fn) W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdBase.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdChemReactions.so to rdChemReactions.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemReactions.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdChemicalFeatures.so to rdChemicalFeatures.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdChemicalFeatures.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdDepictor.so to rdDepictor.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDepictor.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdDistGeom.so to rdDistGeom.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdDistGeom.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdFMCS.so to rdFMCS.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFMCS.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdFingerprintGenerator.so to rdFingerprintGenerator.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdFingerprintGenerator.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdForceFieldHelpers.so to rdForceFieldHelpers.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceFieldHelpers.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMMPA.so to rdMMPA.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMMPA.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolAlign.so to rdMolAlign.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolAlign.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolCatalog.so to rdMolCatalog.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolCatalog.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolChemicalFeatures.so to rdMolChemicalFeatures.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolChemicalFeatures.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolDescriptors.so to rdMolDescriptors.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDescriptors.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolHash.so to rdMolHash.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolHash.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolInterchange.so to rdMolInterchange.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolInterchange.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolTransforms.so to rdMolTransforms.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolTransforms.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdPartialCharges.so to rdPartialCharges.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdPartialCharges.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdRGroupDecomposition.so to rdRGroupDecomposition.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdRGroupDecomposition.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdReducedGraphs.so to rdReducedGraphs.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdReducedGraphs.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdSLNParse.so to rdSLNParse.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSLNParse.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdShapeHelpers.so to rdShapeHelpers.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdShapeHelpers.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdStructChecker.so to rdStructChecker.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdStructChecker.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdSubstructLibrary.so to rdSubstructLibrary.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSubstructLibrary.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdchem.so to rdchem.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdchem.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdfiltercatalog.so to rdfiltercatalog.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfiltercatalog.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdfragcatalog.so to rdfragcatalog.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdfragcatalog.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdmolfiles.so to rdmolfiles.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolfiles.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdmolops.so to rdmolops.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdmolops.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdqueries.so to rdqueries.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdqueries.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdtrajectory.so to rdtrajectory.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdtrajectory.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolDraw2D.so to rdMolDraw2D.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolDraw2D.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMolStandardize.so to rdMolStandardize.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMolStandardize.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdMetricMatrixCalc.so to rdMetricMatrixCalc.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdMetricMatrixCalc.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming cDataStructs.so to cDataStructs.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cDataStructs.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming DistGeom.so to DistGeom.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: DistGeom.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdForceField.so to rdForceField.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdForceField.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdGeometry.so to rdGeometry.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdGeometry.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming Clustering.so to Clustering.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Clustering.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming cQuantize.so to cQuantize.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: cQuantize.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdInfoTheory.so to rdInfoTheory.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdInfoTheory.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdAlignment.so to rdAlignment.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdAlignment.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming rdSimDivPickers.so to rdSimDivPickers.x86_64-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: rdSimDivPickers.x86_64-linux-gnu.so dh_numpy -ppython-rdkit make[1]: Leaving directory '/build/rdkit-201809.1+dfsg' dh_installinit -O--buildsystem=cmake -O--parallel dh_lintian -O--buildsystem=cmake -O--parallel dh_perl -O--buildsystem=cmake -O--parallel dh_link -O--buildsystem=cmake -O--parallel dh_strip_nondeterminism -O--buildsystem=cmake -O--parallel dh_compress -O--buildsystem=cmake -O--parallel dh_fixperms -O--buildsystem=cmake -O--parallel dh_missing -O--buildsystem=cmake -O--parallel dh_strip -O--buildsystem=cmake -O--parallel dh_makeshlibs -O--buildsystem=cmake -O--parallel dh_shlibdeps -O--buildsystem=cmake -O--parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librdkit1/usr/lib/libRDKitDistGeometry.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceFieldHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitMolAlign.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitDistGeomHelpers.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitForceField.so.1.2018.09.1 debian/librdkit1/usr/lib/libRDKitOptimizer.so.1.2018.09.1 were not linked against libRDKitTrajectory.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libRDKitOptimizer.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libRDKitEigenSolvers.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libcoordgenlibs.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Numerics/rdAlignment.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolCatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/MolStandardize/rdMolStandardize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMMPA.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Geometry/rdGeometry.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolInterchange.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdReducedGraphs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/Draw/rdMolDraw2D.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolHash.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFMCS.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdPartialCharges.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdqueries.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/rdBase.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolChemicalFeatures.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Cluster/Clustering.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdChemReactions.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ForceField/rdForceField.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/SimDivFilters/rdSimDivPickers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolDescriptors.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDepictor.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolops.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolTransforms.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdchem.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfragcatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/Data/cQuantize.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DistanceGeometry/DistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataStructs/cDataStructs.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdDistGeom.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdRGroupDecomposition.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/ML/InfoTheory/rdInfoTheory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdmolfiles.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSubstructLibrary.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdFingerprintGenerator.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdtrajectory.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdfiltercatalog.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdSLNParse.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdStructChecker.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdShapeHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdForceFieldHelpers.x86_64-linux-gnu.so debian/python-rdkit/usr/lib/python2.7/dist-packages/rdkit/Chem/rdMolAlign.x86_64-linux-gnu.so were not linked against libboost_serialization.so.1.67.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=cmake -O--parallel dh_gencontrol -O--buildsystem=cmake -O--parallel dpkg-gencontrol: warning: Depends field of package rdkit-data: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package rdkit-data: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package postgresql-11-rdkit: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: Depends field of package librdkit-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package rdkit-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package librdkit1: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package librdkit-dev: substitution variable ${python:Depends} unused, but is defined dpkg-gencontrol: warning: package rdkit-doc: substitution variable ${python:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake -O--parallel dh_builddeb -O--buildsystem=cmake -O--parallel dpkg-deb: building package 'postgresql-11-rdkit-dbgsym' in '../postgresql-11-rdkit-dbgsym_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'rdkit-data' in '../rdkit-data_201809.1+dfsg-6_all.deb'. dpkg-deb: building package 'postgresql-11-rdkit' in '../postgresql-11-rdkit_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'rdkit-doc' in '../rdkit-doc_201809.1+dfsg-6_all.deb'. dpkg-deb: building package 'librdkit-dev' in '../librdkit-dev_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'python-rdkit-dbgsym' in '../python-rdkit-dbgsym_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'librdkit1' in '../librdkit1_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'librdkit1-dbgsym' in '../librdkit1-dbgsym_201809.1+dfsg-6_amd64.deb'. dpkg-deb: building package 'python-rdkit' in '../python-rdkit_201809.1+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../rdkit_201809.1+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2033627 and its subdirectories I: Current time: Mon Jan 16 05:43:18 -12 2023 I: pbuilder-time-stamp: 1673890998