I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 29 10:16:02 +14 2021 I: pbuilder-time-stamp: 1632860162 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [etsf-io_1.0.4-4.dsc] I: copying [./etsf-io_1.0.4.orig.tar.gz] I: copying [./etsf-io_1.0.4-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/var/lib/jenkins/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Feb 19 02:26:32 2019 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./etsf-io_1.0.4-4.dsc dpkg-source: info: extracting etsf-io in etsf-io-1.0.4 dpkg-source: info: unpacking etsf-io_1.0.4.orig.tar.gz dpkg-source: info: unpacking etsf-io_1.0.4-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying ignore_f90_test_module_with_syntax_error.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1008/tmp/hooks/D01_modify_environment starting debug: Running on codethink-sled15-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1008/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1008/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=8' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/var/lib/jenkins HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1008 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.BfNKFPvNnd/pbuilderrc_dFXM --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.BfNKFPvNnd/b2 --logfile b2/build.log etsf-io_1.0.4-4.dsc' SUDO_GID=117 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root USERNAME=root _='I: set' http_proxy=http://192.168.101.16:3128 I: uname -a Linux i-capture-the-hostname 4.4.0-187-generic #217-Ubuntu SMP Tue Jul 21 04:16:35 UTC 2020 aarch64 GNU/Linux I: ls -l /bin total 4928 -rwxr-xr-x 1 root root 1216928 Apr 18 2019 bash -rwxr-xr-x 3 root root 34808 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 34808 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 14264 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 35576 Mar 1 2019 cat -rwxr-xr-x 1 root root 60256 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 56096 Mar 1 2019 chmod -rwxr-xr-x 1 root root 64368 Mar 1 2019 chown -rwxr-xr-x 1 root root 134632 Mar 1 2019 cp -rwxr-xr-x 1 root root 129536 Jan 18 2019 dash -rwxr-xr-x 1 root root 97136 Mar 1 2019 date -rwxr-xr-x 1 root root 76736 Mar 1 2019 dd -rwxr-xr-x 1 root root 93752 Mar 1 2019 df -rwxr-xr-x 1 root root 138848 Mar 1 2019 dir -rwxr-xr-x 1 root root 75984 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 31368 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 27256 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 68792 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 34824 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 174304 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 89656 Jan 6 2019 gzip -rwxr-xr-x 1 root root 18440 Sep 27 2018 hostname -rwxr-xr-x 1 root root 64472 Mar 1 2019 ln -rwxr-xr-x 1 root root 52544 Jul 27 2018 login -rwxr-xr-x 1 root root 138848 Mar 1 2019 ls -rwxr-xr-x 1 root root 108552 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 76840 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 64480 Mar 1 2019 mknod -rwxr-xr-x 1 root root 39736 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 38840 Jan 10 2019 more -rwsr-xr-x 1 root root 47112 Jan 10 2019 mount -rwxr-xr-x 1 root root 14344 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 138736 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35560 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 43712 Mar 1 2019 readlink -rwxr-xr-x 1 root root 68440 Mar 1 2019 rm -rwxr-xr-x 1 root root 39624 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 19144 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 114016 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Sep 29 10:16 sh -> bash lrwxrwxrwx 1 root root 4 Sep 27 04:48 sh.distrib -> dash -rwxr-xr-x 1 root root 31384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 72480 Mar 1 2019 stty -rwsr-xr-x 1 root root 59424 Jan 10 2019 su -rwxr-xr-x 1 root root 31416 Mar 1 2019 sync -rwxr-xr-x 1 root root 449416 Apr 24 2019 tar -rwxr-xr-x 1 root root 10560 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 88968 Mar 1 2019 touch -rwxr-xr-x 1 root root 27256 Mar 1 2019 true -rwxr-xr-x 1 root root 14264 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 30728 Jan 10 2019 umount -rwxr-xr-x 1 root root 31384 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 138848 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34824 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/1008/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), dh-exec, gfortran, libnetcdf-dev (>= 1:4.3.3.1), libnetcdff-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19168 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev (>= 1:4.3.3.1); however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libnetcdff-dev; however: Package libnetcdff-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libelf1{a} libfile-stripnondeterminism-perl{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnetcdf-dev{a} libnetcdf13{a} libnetcdff-dev{a} libnetcdff6{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx pkg-config pkgconf publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 36.2 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main arm64 libbsd0 arm64 0.9.1-2 [97.4 kB] Get: 2 http://deb.debian.org/debian buster/main arm64 bsdmainutils arm64 11.1.2+b1 [185 kB] Get: 3 http://deb.debian.org/debian buster/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get: 4 http://deb.debian.org/debian buster/main arm64 groff-base arm64 1.22.4-3 [869 kB] Get: 5 http://deb.debian.org/debian buster/main arm64 libpipeline1 arm64 1.5.1-2 [29.8 kB] Get: 6 http://deb.debian.org/debian buster/main arm64 man-db arm64 2.8.5-2 [1258 kB] Get: 7 http://deb.debian.org/debian buster/main arm64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main arm64 libmagic-mgc arm64 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main arm64 libmagic1 arm64 1:5.35-4+deb10u1 [115 kB] Get: 10 http://deb.debian.org/debian buster/main arm64 file arm64 1:5.35-4+deb10u1 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main arm64 gettext-base arm64 0.19.8.1-9 [120 kB] Get: 12 http://deb.debian.org/debian buster/main arm64 libsigsegv2 arm64 2.12-2 [32.3 kB] Get: 13 http://deb.debian.org/debian buster/main arm64 m4 arm64 1.4.18-2 [198 kB] Get: 14 http://deb.debian.org/debian buster/main arm64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main arm64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main arm64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main arm64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main arm64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main arm64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main arm64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main arm64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main arm64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main arm64 libelf1 arm64 0.176-1.1 [160 kB] Get: 24 http://deb.debian.org/debian buster/main arm64 dwz arm64 0.12-3 [71.7 kB] Get: 25 http://deb.debian.org/debian buster/main arm64 libglib2.0-0 arm64 2.58.3-2+deb10u2 [1185 kB] Get: 26 http://deb.debian.org/debian buster/main arm64 libicu63 arm64 63.1-6+deb10u1 [8151 kB] Get: 27 http://deb.debian.org/debian buster/main arm64 libxml2 arm64 2.9.4+dfsg1-7+b3 [623 kB] Get: 28 http://deb.debian.org/debian buster/main arm64 libcroco3 arm64 0.6.12-3 [140 kB] Get: 29 http://deb.debian.org/debian buster/main arm64 libncurses6 arm64 6.1+20181013-2+deb10u2 [92.6 kB] Get: 30 http://deb.debian.org/debian buster/main arm64 gettext arm64 0.19.8.1-9 [1261 kB] Get: 31 http://deb.debian.org/debian buster/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main arm64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main arm64 debhelper all 12.1.1 [1016 kB] Get: 34 http://deb.debian.org/debian buster/main arm64 dh-exec arm64 0.23.1 [25.9 kB] Get: 35 http://deb.debian.org/debian buster/main arm64 libgfortran5 arm64 8.3.0-6 [298 kB] Get: 36 http://deb.debian.org/debian buster/main arm64 libgfortran-8-dev arm64 8.3.0-6 [346 kB] Get: 37 http://deb.debian.org/debian buster/main arm64 gfortran-8 arm64 8.3.0-6 [7861 kB] Get: 38 http://deb.debian.org/debian buster/main arm64 gfortran arm64 4:8.3.0-1 [1420 B] Get: 39 http://deb.debian.org/debian buster/main arm64 hdf5-helpers arm64 1.10.4+repack-10 [35.2 kB] Get: 40 http://deb.debian.org/debian buster/main arm64 libaec0 arm64 1.0.2-1 [18.8 kB] Get: 41 http://deb.debian.org/debian buster/main arm64 libsz2 arm64 1.0.2-1 [6456 B] Get: 42 http://deb.debian.org/debian buster/main arm64 libaec-dev arm64 1.0.2-1 [17.1 kB] Get: 43 http://deb.debian.org/debian buster/main arm64 libkeyutils1 arm64 1.6-6 [14.9 kB] Get: 44 http://deb.debian.org/debian buster/main arm64 libkrb5support0 arm64 1.17-3 [64.7 kB] Get: 45 http://deb.debian.org/debian buster/main arm64 libk5crypto3 arm64 1.17-3 [122 kB] Get: 46 http://deb.debian.org/debian buster/main arm64 libssl1.1 arm64 1.1.1d-0+deb10u3 [1382 kB] Get: 47 http://deb.debian.org/debian buster/main arm64 libkrb5-3 arm64 1.17-3 [353 kB] Get: 48 http://deb.debian.org/debian buster/main arm64 libgssapi-krb5-2 arm64 1.17-3 [150 kB] Get: 49 http://deb.debian.org/debian buster/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-1+deb10u1 [69.3 kB] Get: 50 http://deb.debian.org/debian buster/main arm64 libsasl2-2 arm64 2.1.27+dfsg-1+deb10u1 [105 kB] Get: 51 http://deb.debian.org/debian buster/main arm64 libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 52 http://deb.debian.org/debian buster/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-3+deb10u2 [216 kB] Get: 53 http://deb.debian.org/debian buster/main arm64 libnghttp2-14 arm64 1.36.0-2+deb10u1 [81.9 kB] Get: 54 http://deb.debian.org/debian buster/main arm64 libpsl5 arm64 0.20.2-2 [53.6 kB] Get: 55 http://deb.debian.org/debian buster/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [55.7 kB] Get: 56 http://deb.debian.org/debian buster/main arm64 libssh2-1 arm64 1.8.0-2.1 [135 kB] Get: 57 http://deb.debian.org/debian buster/main arm64 libcurl3-gnutls arm64 7.64.0-4+deb10u1 [310 kB] Get: 58 http://deb.debian.org/debian buster/main arm64 libcurl4-gnutls-dev arm64 7.64.0-4+deb10u1 [408 kB] Get: 59 http://deb.debian.org/debian buster/main arm64 libhdf5-103 arm64 1.10.4+repack-10 [1168 kB] Get: 60 http://deb.debian.org/debian buster/main arm64 libhdf5-cpp-103 arm64 1.10.4+repack-10 [132 kB] Get: 61 http://deb.debian.org/debian buster/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1 [210 kB] Get: 62 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo arm64 1:1.5.2-2+b1 [115 kB] Get: 63 http://deb.debian.org/debian buster/main arm64 libjpeg62-turbo-dev arm64 1:1.5.2-2+b1 [186 kB] Get: 64 http://deb.debian.org/debian buster/main arm64 libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 65 http://deb.debian.org/debian buster/main arm64 libhdf5-dev arm64 1.10.4+repack-10 [2683 kB] Get: 66 http://deb.debian.org/debian buster/main arm64 libnetcdf13 arm64 1:4.6.2-1 [378 kB] Get: 67 http://deb.debian.org/debian buster/main arm64 libnetcdf-dev arm64 1:4.6.2-1 [82.7 kB] Get: 68 http://deb.debian.org/debian buster/main arm64 libnetcdff6 arm64 4.4.5-1 [92.5 kB] Get: 69 http://deb.debian.org/debian buster/main arm64 libnetcdff-dev arm64 4.4.5-1 [283 kB] Fetched 36.2 MB in 2s (17.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:arm64. 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Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_arm64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.1-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_arm64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-4+deb10u1) ... 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Setting up libxml2:arm64 (2.9.4+dfsg1-7+b3) ... Setting up libsz2:arm64 (1.0.2-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libgfortran-8-dev:arm64 (8.3.0-6) ... Setting up libtool (2.4.6-9) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libaec-dev:arm64 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-3+deb10u2) ... Setting up m4 (1.4.18-2) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libhdf5-103:arm64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:arm64 (1.17-3) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-10) ... Setting up libcurl3-gnutls:arm64 (7.64.0-4+deb10u1) ... Setting up libnetcdf13:arm64 (1:4.6.2-1) ... Setting up libcurl4-gnutls-dev:arm64 (7.64.0-4+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libnetcdff6 (4.4.5-1) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.6.2-1) ... Setting up libnetcdff-dev (4.4.5-1) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-exec (0.23.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/etsf-io-1.0.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package etsf-io dpkg-buildpackage: info: source version 1.0.4-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf parallel-tests: installing 'config/test-driver' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/etsf-io-1.0.4' dh_auto_configure -- --docdir=\${prefix}/share/doc/libetsf-io-doc --with-moduledir=\${includedir} FCFLAGS="-O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security" ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --docdir=\${prefix}/share/doc/libetsf-io-doc --with-moduledir=\${includedir} "FCFLAGS=-O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security" configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gfortran... gfortran checking whether the Fortran compiler works... yes checking for Fortran compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking for Fortran flag to compile .f90 files... none checking whether we are using the GNU Fortran compiler... (cached) yes checking whether gfortran accepts -g... (cached) yes checking which type of Fortran compiler we have... gcc GNU checking whether the Fortran compiler accepts exit()... yes checking whether the Fortran compiler accepts flush()... yes checking for module extension for compiler 'gcc'... mod checking for ranlib... ranlib checking for ar... ar checking for NetCDF includes... -I/usr/include checking for NetCDF libraries... -lnetcdff -lnetcdf checking for NetCDF Fortran flags... checking for NetCDF... yes checking for parallel IO with NetCDF... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/low_level/Makefile config.status: creating src/group_level/Makefile config.status: creating src/tutorials/Makefile config.status: creating src/utils/Makefile config.status: creating tests/low_level/Makefile config.status: creating tests/group_level/Makefile config.status: creating tests/utils/Makefile config.status: creating doc/www/Makefile config.status: creating doc/www/low_level/Makefile config.status: creating doc/www/group_level/Makefile config.status: creating doc/www/utils/Makefile config.status: creating doc/www/tutorials/Makefile configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking Basics: Prefix: /usr Fortran90 compiler: gfortran Fortran90 flags: -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include Linker flags: -Wl,-z,relro -Wl,-z,now Linked libraries: -lnetcdff -lnetcdf Installed module dir: ${includedir} Installed lib dir: ${prefix}/lib/aarch64-linux-gnu Installed doc dir: ${prefix}/share/doc/libetsf-io-doc make[1]: Leaving directory '/build/etsf-io-1.0.4' dh_auto_build make -j8 make[1]: Entering directory '/build/etsf-io-1.0.4' Making all in src/low_level make[2]: Entering directory '/build/etsf-io-1.0.4/src/low_level' gfortran -I/usr/include -I. -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o etsf_io_low_level.o etsf_io_low_level.f90 f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran gfortran -I/usr/include -I. -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o netcdf4_wrappers.o netcdf4_wrappers.f90 f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran rm -f libetsf_io_low_level.a ar cru libetsf_io_low_level.a etsf_io_low_level.o netcdf4_wrappers.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libetsf_io_low_level.a make[2]: Leaving directory '/build/etsf-io-1.0.4/src/low_level' Making all in src/group_level make[2]: Entering directory '/build/etsf-io-1.0.4/src/group_level' gfortran -I../../src/low_level -I. -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o etsf_io.o etsf_io.f90 f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran rm -f libetsf_io.a ar cru libetsf_io.a etsf_io.o ../../src/low_level/etsf_io_low_level.o ../../src/low_level/netcdf4_wrappers.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libetsf_io.a make[2]: Leaving directory '/build/etsf-io-1.0.4/src/group_level' Making all in src/utils make[2]: Entering directory '/build/etsf-io-1.0.4/src/utils' gfortran -I../../src/low_level -I../../src/group_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o etsf_io_file.o etsf_io_file.f90 gfortran -I../../src/low_level -I../../src/group_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o etsf_io_tools.o etsf_io_tools.f90 f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran rm -f libetsf_io_utils.a ar cru libetsf_io_utils.a etsf_io_file.o etsf_io_tools.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libetsf_io_utils.a gfortran -I../../src/low_level -I../../src/group_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o etsf_io.o etsf_io.f90 f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran gfortran -I../../src/low_level -I../../src/group_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -L../../src/group_level -L. -Wl,-z,relro -Wl,-z,now -o etsf_io etsf_io.o -letsf_io_utils -letsf_io -lnetcdff -lnetcdf make[2]: Leaving directory '/build/etsf-io-1.0.4/src/utils' Making all in tests/low_level make[2]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' Making all in tests/utils make[2]: Entering directory '/build/etsf-io-1.0.4/tests/utils' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/etsf-io-1.0.4/tests/utils' Making all in doc/www make[2]: Entering directory '/build/etsf-io-1.0.4/doc/www' Making all in low_level make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/low_level' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/low_level' Making all in group_level make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/group_level' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/group_level' Making all in tutorials make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/tutorials' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/tutorials' Making all in utils make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/utils' make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[2]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[2]: Entering directory '/build/etsf-io-1.0.4' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/build/etsf-io-1.0.4' make[1]: Leaving directory '/build/etsf-io-1.0.4' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/etsf-io-1.0.4' Making check in src/low_level make[2]: Entering directory '/build/etsf-io-1.0.4/src/low_level' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/etsf-io-1.0.4/src/low_level' Making check in src/group_level make[2]: Entering directory '/build/etsf-io-1.0.4/src/group_level' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/etsf-io-1.0.4/src/group_level' Making check in src/utils make[2]: Entering directory '/build/etsf-io-1.0.4/src/utils' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/etsf-io-1.0.4/src/utils' Making check in tests/low_level make[2]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' make tests_read tests_write make[3]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' gfortran -I../../src/low_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o tests_read.o tests_read.f90 gfortran -I../../src/low_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -c -o tests_write.o tests_write.f90 f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran gfortran -I../../src/low_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -L../../src/low_level -Wl,-z,relro -Wl,-z,now -o tests_write tests_write.o -letsf_io_low_level -lnetcdff -lnetcdf gfortran -I../../src/low_level -I/usr/include -O2 -fPIC -g -O2 -ffile-prefix-map=/build/etsf-io-1.0.4=. -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -L../../src/low_level -Wl,-z,relro -Wl,-z,now -o tests_read tests_read.o -letsf_io_low_level -lnetcdff -lnetcdf make[3]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' make check-TESTS make[3]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' make[4]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' ./tests_read . | tee tests_read.log \rm -f open_create_t*.nc ./tests_write . | tee tests_write.log Testing etsf_io_low_open_read()... Program received signal SIGSEGV: Segmentation fault - invalid memory reference. Backtrace for this error: #0 0xffff8e9167df in ??? #1 0xffff8e9158a7 in ??? #2 0xffff8ec3a50f in ??? #3 0xffff8e720974 in ??? #4 0xffff8ea7ba33 in ??? #5 0xffff8ea7c48b in ??? #6 0xffff8ea7a6a7 in ??? #7 0xffff8ea7491b in ??? #8 0xffff8eba8e47 in ??? #9 0xffff8ebe9c53 in ??? #10 0xaaaadd59e3a3 in __etsf_io_low_level_MOD_etsf_io_low_open_read at ./src/low_level/read_routines.f90:910 #11 0xaaaadd56740f in tests_read_open at ./tests/low_level/tests_read.f90:52 #12 0xaaaadd56c737 in tests_read at ./tests/low_level/tests_read.f90:17 #13 0xaaaadd566fa3 in main at ./tests/low_level/tests_read.f90:3 Testing etsf_io_low_open_create()... == argument filename: no write access OK == == argument filename: creation, minimal header OK == == | opening test OK == == argument filename: creation, full header OK == == | opening test OK == == | reading title OK == == | value title OK == == | reading history OK == == | value history OK == Testing etsf_io_low_open_modify()... == argument filename: wrong filename OK == == argument filename: wrong file type OK == == argument filename: NetCDF without header OK == == argument filename: NetCDF without header modification OK == == argument filename: NetCDF with title creation OK == == | reading title OK == == | value title OK == == argument filename: NetCDF with title modification OK == == | reading title OK == == | value title OK == == argument filename: NetCDF with history creation OK == == | reading history OK == == | value history OK == == argument filename: NetCDF with history updating OK == == | reading history OK == == | value history OK == Testing etsf_io_low_write_dim()... == argument ncid: wrong value OK == == argument dimname: write a new value OK == == | reading dimension OK == == | checking value OK == == argument value: wrong negative value OK == == argument dimname: overwriting (should fail) OK == == argument dimname: overwriting (same value) OK == == | reading dimension OK == == | checking value OK == Testing etsf_io_low_write_att_integer()... == argument ncid: wrong value OK == == argument att: good value (0D) OK == == | reading variable OK == == | checking values OK == == argument att: good value (1D) OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_write_att_real()... == argument ncid: wrong value OK == == argument att: good value (0D) OK == == | reading variable OK == == | checking values OK == == argument att: good value (1D) OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_write_att_double()... == argument ncid: wrong value OK == == argument att: good value (0D) OK == == | reading variable OK == == | checking values OK == == argument att: good value (1D) OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_write_att_character()... == argument ncid: wrong value OK == == argument att: good value OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_def_var()... == argument ncid: wrong value OK == == single value: wrong type OK == == single value: adding a new variable OK == == single value: overwriting (should fail) OK == == single value: overwriting (matching definition) OK == == single value: read definition OK == == | check definition OK == == 1D array: wrong type OK == == 1D array: wrong dimension OK == == 1D array: adding a new variable OK == == 1D array: overwriting (should fail) OK == == 1D array: overwriting (matching definition) OK == == 1D array: read definition OK == == | check definition OK == == 2D array: adding a new variable OK == == string: adding a new variable OK == == string: read definition OK == == | check definition OK == == 2D array: adding a new variable OK == == 2D array: read definition OK == == | check definition OK == == 4D array: adding a new variable OK == Testing etsf_io_low_write_var_integer()... == argument ncid: wrong value OK == == argument varname: wrong value OK == == argument var: wrong type OK == == argument var: wrong dimensions OK == == argument var: good value (0D) OK == == | reading variable OK == == | checking values OK == == argument var: good value (1D) OK == == | reading variable OK == == | checking values OK == == argument var: wrong matching (2D <-> 1D) OK == == argument var: good matching (2D <-> 1D) OK == == | reading variable OK == == | checking values OK == == argument sub: wrong size OK == == argument sub: out-of-bounds OK == == argument sub: wrong dimensions OK == == argument sub: good dimensions OK == == | reading variable OK == == | checking values OK == == argument var: generic pointer (1D) OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_write_var_double()... == argument ncid: wrong value OK == == argument varname: wrong value OK == == argument var: wrong type OK == == argument var: wrong dimensions OK == == argument var: good value (2D) OK == == | reading variable OK == == | checking values OK == == argument var: wrong matching (2D <-> 1D) OK == == argument var: good matching (2D <-> 1D) OK == == | reading variable OK == == | checking values OK == == argument var + sub: good matching (3D <-> 1D) OK == == | reading variable OK == == | checking values OK == == argument var: generic pointer (2D) OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_write_var_character()... == argument ncid: wrong value OK == == argument varname: wrong value OK == == argument var: wrong type OK == == argument var: wrong dimensions OK == == argument var: good value (one string) OK == == | reading variable OK == == | checking values OK == Testing etsf_io_low_copy_all_att()... == argument ncid_from: wrong value OK == == argument ncid_to: wrong value OK == == argument ncvarid_from: wrong value OK == == argument ncvarid_to: wrong value OK == == global attribute: valid copy OK == == | reading title OK == == | value title OK == == global attribute to variable: valid copy OK == == | reading title OK == == | value title OK == == variable attribute to variable: valid copy OK == == | reading attribute OK == == | value units OK == \cp ./tests_run.sh run PASS: run ============================================================================ Testsuite summary for ETSF - IO library 1.0.4 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' make[3]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' make[2]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' Making check in tests/utils make[2]: Entering directory '/build/etsf-io-1.0.4/tests/utils' make check-TESTS make[3]: Entering directory '/build/etsf-io-1.0.4/tests/utils' make[4]: Entering directory '/build/etsf-io-1.0.4/tests/utils' echo "#!/bin/sh" > runSi; chmod u+x runSi echo "#!/bin/sh" > runRspc1; chmod u+x runRspc1 echo "../../src/utils/etsf_io -a content ./si1002x1-o_DS1_DEN-etsf.nc | grep '^ - ' > si1002x1-o_DS1_DEN-etsf.log" >> runSi echo 'diff=`diff ./si1002x1-o_DS1_DEN-etsf.ref si1002x1-o_DS1_DEN-etsf.log`' >> runSi echo "../../src/utils/etsf_io -a content ./wfs_complex-etsf.nc | grep '^ - ' > wfs_complex-etsf.log" >> runRspc1 echo "if test -z \"\$diff\" ; then exit 0; else exit 1; fi" >> runSi echo 'diff=`diff ./wfs_complex-etsf.ref wfs_complex-etsf.log`' >> runRspc1 echo "if test -z \"\$diff\" ; then exit 0; else exit 1; fi" >> runRspc1 echo "#!/bin/sh" > runRspc2; chmod u+x runRspc2 echo "../../src/utils/etsf_io -a content ./wfs_real-etsf.nc | grep '^ - ' > wfs_real-etsf.log" >> runRspc2 echo 'diff=`diff ./wfs_real-etsf.ref wfs_real-etsf.log`' >> runRspc2 echo "if test -z \"\$diff\" ; then exit 0; else exit 1; fi" >> runRspc2 PASS: runSi PASS: runRspc2 PASS: runRspc1 ============================================================================ Testsuite summary for ETSF - IO library 1.0.4 ============================================================================ # TOTAL: 3 # PASS: 3 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/etsf-io-1.0.4/tests/utils' make[3]: Leaving directory '/build/etsf-io-1.0.4/tests/utils' make[2]: Leaving directory '/build/etsf-io-1.0.4/tests/utils' Making check in doc/www make[2]: Entering directory '/build/etsf-io-1.0.4/doc/www' Making check in low_level make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/low_level' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/low_level' Making check in group_level make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/group_level' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/group_level' Making check in tutorials make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/tutorials' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/tutorials' Making check in utils make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/utils' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/utils' make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[2]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[2]: Entering directory '/build/etsf-io-1.0.4' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/etsf-io-1.0.4' make[1]: Leaving directory '/build/etsf-io-1.0.4' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j8 install DESTDIR=/build/etsf-io-1.0.4/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/etsf-io-1.0.4' Making install in src/low_level make[2]: Entering directory '/build/etsf-io-1.0.4/src/low_level' make[3]: Entering directory '/build/etsf-io-1.0.4/src/low_level' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/include' /usr/bin/install -c -m 644 libetsf_io_low_level.a '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 etsf_io_low_level.mod '/build/etsf-io-1.0.4/debian/tmp/usr/include' ( cd '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' && ranlib libetsf_io_low_level.a ) make[3]: Leaving directory '/build/etsf-io-1.0.4/src/low_level' make[2]: Leaving directory '/build/etsf-io-1.0.4/src/low_level' Making install in src/group_level make[2]: Entering directory '/build/etsf-io-1.0.4/src/group_level' make[3]: Entering directory '/build/etsf-io-1.0.4/src/group_level' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 libetsf_io.a '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/include' /usr/bin/install -c -m 644 etsf_io.mod '/build/etsf-io-1.0.4/debian/tmp/usr/include' ( cd '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' && ranlib libetsf_io.a ) make[3]: Leaving directory '/build/etsf-io-1.0.4/src/group_level' make[2]: Leaving directory '/build/etsf-io-1.0.4/src/group_level' Making install in src/utils make[2]: Entering directory '/build/etsf-io-1.0.4/src/utils' make[3]: Entering directory '/build/etsf-io-1.0.4/src/utils' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/bin' /usr/bin/install -c etsf_io '/build/etsf-io-1.0.4/debian/tmp/usr/bin' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/include' /usr/bin/install -c -m 644 libetsf_io_utils.a '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 etsf_io_file.mod etsf_io_tools.mod '/build/etsf-io-1.0.4/debian/tmp/usr/include' ( cd '/build/etsf-io-1.0.4/debian/tmp/usr/lib/aarch64-linux-gnu' && ranlib libetsf_io_utils.a ) make[3]: Leaving directory '/build/etsf-io-1.0.4/src/utils' make[2]: Leaving directory '/build/etsf-io-1.0.4/src/utils' Making install in tests/low_level make[2]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' make[3]: Entering directory '/build/etsf-io-1.0.4/tests/low_level' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' make[2]: Leaving directory '/build/etsf-io-1.0.4/tests/low_level' Making install in tests/utils make[2]: Entering directory '/build/etsf-io-1.0.4/tests/utils' make[3]: Entering directory '/build/etsf-io-1.0.4/tests/utils' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/etsf-io-1.0.4/tests/utils' make[2]: Leaving directory '/build/etsf-io-1.0.4/tests/utils' Making install in doc/www make[2]: Entering directory '/build/etsf-io-1.0.4/doc/www' Making install in low_level make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/low_level' make[4]: Entering directory '/build/etsf-io-1.0.4/doc/www/low_level' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/low_level' /usr/bin/install -c -m 644 etsf_io_low_level_f90.html public_variables_f90.html read_routines_f90.html write_routines_f90.html '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/low_level' make[4]: Leaving directory '/build/etsf-io-1.0.4/doc/www/low_level' make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/low_level' Making install in group_level make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/group_level' make[4]: Entering directory '/build/etsf-io-1.0.4/doc/www/group_level' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/group_level' /usr/bin/install -c -m 644 etsf_io_dims_def_f90.html etsf_io_dims_get_f90.html etsf_io_dims_merge_f90.html etsf_io_dims_trace_f90.html etsf_io_geometry_def_f90.html etsf_io_electrons_def_f90.html etsf_io_kpoints_def_f90.html etsf_io_basisdata_def_f90.html etsf_io_gwdata_def_f90.html etsf_io_dielectric_def_f90.html etsf_io_main_def_f90.html etsf_io_geometry_get_f90.html etsf_io_electrons_get_f90.html etsf_io_kpoints_get_f90.html etsf_io_basisdata_get_f90.html etsf_io_gwdata_get_f90.html etsf_io_dielectric_get_f90.html etsf_io_main_get_f90.html etsf_io_geometry_put_f90.html etsf_io_electrons_put_f90.html etsf_io_kpoints_put_f90.html etsf_io_basisdata_put_f90.html etsf_io_gwdata_put_f90.html etsf_io_dielectric_put_f90.html etsf_io_main_put_f90.html etsf_io_geometry_copy_f90.html etsf_io_electrons_copy_f90.html etsf_io_kpoints_copy_f90.html etsf_io_basisdata_copy_f90.html etsf_io_gwdata_copy_f90.html etsf_io_dielectric_copy_f90.html etsf_io_main_copy_f90.html etsf_io_split_init_f90.html etsf_io_split_allocate_f90.html etsf_io_split_free_f90.html etsf_io_split_def_f90.html etsf_io_split_get_f90.html etsf_io_split_put_f90.html etsf_io_split_copy_f90.html etsf_io_split_merge_f90.html '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/group_level' /usr/bin/install -c -m 644 etsf_io_vars_free_f90.html etsf_io_data_init_f90.html etsf_io_data_read_f90.html etsf_io_data_write_f90.html etsf_io_data_contents_f90.html etsf_io_data_get_f90.html etsf_io_data_copy_f90.html etsf_io_f90.html '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/group_level' make[4]: Leaving directory '/build/etsf-io-1.0.4/doc/www/group_level' make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/group_level' Making install in tutorials make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/tutorials' make[4]: Entering directory '/build/etsf-io-1.0.4/doc/www/tutorials' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/tutorials' /usr/bin/install -c -m 644 convert_to_xyz_f90.html create_a_crystal_den_file_f90.html index.html mix_ETSF_and_non_ETSF_f90.html MPI_output_of_a_density_f90.html read_a_file_f90.html README_f90.html read_write_sub_access_f90.html '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/tutorials' make[4]: Leaving directory '/build/etsf-io-1.0.4/doc/www/tutorials' make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/tutorials' Making install in utils make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www/utils' make[4]: Entering directory '/build/etsf-io-1.0.4/doc/www/utils' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/utils' /usr/bin/install -c -m 644 binary.html etsf_io_file_check_dielectric_function_data_f90.html etsf_io_file_check_wavefunctions_data_f90.html etsf_io_file_check_scalar_field_data_f90.html etsf_io_file_check_crystallographic_data_f90.html etsf_io_file_contents_f90.html etsf_io_file_f90.html etsf_io_file_public_f90.html etsf_io_tools_f90.html '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc/utils' make[4]: Leaving directory '/build/etsf-io-1.0.4/doc/www/utils' make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www/utils' make[3]: Entering directory '/build/etsf-io-1.0.4/doc/www' make[4]: Entering directory '/build/etsf-io-1.0.4/doc/www' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc' /usr/bin/install -c -m 644 index.html masterindex.html robo_definitions.html robodoc.css robo_functions.html robo_methods.html robo_modules.html robo_sourcefiles.html robo_strutures.html robo_sub_cat.html robo_tuto_cat.html toc_index.html '/build/etsf-io-1.0.4/debian/tmp/usr/share/doc/libetsf-io-doc' make[4]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[3]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[2]: Leaving directory '/build/etsf-io-1.0.4/doc/www' make[2]: Entering directory '/build/etsf-io-1.0.4' make[3]: Entering directory '/build/etsf-io-1.0.4' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/etsf-io-1.0.4/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 doc/etsf_io.1 '/build/etsf-io-1.0.4/debian/tmp/usr/share/man/man1' make[3]: Leaving directory '/build/etsf-io-1.0.4' make[2]: Leaving directory '/build/etsf-io-1.0.4' make[1]: Leaving directory '/build/etsf-io-1.0.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_missing: usr/share/doc/libetsf-io-doc/robodoc.css exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: etsf-io (1), libetsf-io-dev (7), libetsf-io-doc (87) * dh_installdocs: etsf-io (3), libetsf-io-dev (0), libetsf-io-doc (3) * dh_installman: etsf-io (1), libetsf-io-dev (0), libetsf-io-doc (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/etsf-io/usr/bin/etsf_io was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/etsf-io/usr/bin/etsf_io was not linked against libm.so.6 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/etsf-io/usr/bin/etsf_io was not linked against libnetcdf.so.13 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libetsf-io-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'etsf-io-dbgsym' in '../etsf-io-dbgsym_1.0.4-4_arm64.deb'. dpkg-deb: building package 'etsf-io' in '../etsf-io_1.0.4-4_arm64.deb'. dpkg-deb: building package 'libetsf-io-doc' in '../libetsf-io-doc_1.0.4-4_all.deb'. dpkg-deb: building package 'libetsf-io-dev' in '../libetsf-io-dev_1.0.4-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../etsf-io_1.0.4-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/1008/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1008/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1008 and its subdirectories I: Current time: Wed Sep 29 10:18:19 +14 2021 I: pbuilder-time-stamp: 1632860299