I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 16 15:38:47 +14 2021 I: pbuilder-time-stamp: 1613439527 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bali-phy_3.4+dfsg-1.dsc] I: copying [./bali-phy_3.4+dfsg.orig.tar.xz] I: copying [./bali-phy_3.4+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 15 00:38:48 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.4+dfsg-1.dsc dpkg-source: info: extracting bali-phy in bali-phy-3.4+dfsg dpkg-source: info: unpacking bali-phy_3.4+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.4+dfsg-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/26842/tmp/hooks/D01_modify_environment starting debug: Running on jtk1b. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/26842/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/26842/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=647ead43163d4dfebf2ac57c56965bdf LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=26842 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.cQpleM9Enk/pbuilderrc_2FHt --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.cQpleM9Enk/b2 --logfile b2/build.log bali-phy_3.4+dfsg-1.dsc' SUDO_GID=114 SUDO_UID=110 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 4.19.0-14-armmp-lpae #1 SMP Debian 4.19.171-2 (2021-01-30) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash -rwxr-xr-x 1 root root 71648 Mar 1 2019 date -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd -rwxr-xr-x 1 root root 55672 Mar 1 2019 df -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 18260 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln -rwxr-xr-x 1 root root 34932 Jul 27 2018 login -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 10 2019 more -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Feb 16 15:39 sh -> bash lrwxrwxrwx 1 root root 4 Feb 7 22:29 sh.distrib -> dash -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty -rwsr-xr-x 1 root root 42472 Jan 10 2019 su -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch -rwxr-xr-x 1 root root 18260 Mar 1 2019 true -rwxr-xr-x 1 root root 9636 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/26842/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on meson (>= 0.45); however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on libcairo2-dev; however: Package libcairo2-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on nlohmann-json-dev; however: Package nlohmann-json-dev is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-random-dev; however: Package libboost-random-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libboost-chrono-dev{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-random-dev{a} libboost-random1.67-dev{a} libboost-random1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost1.67-dev{a} libbsd0{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcroco3{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libice-dev{a} libice6{a} libicu63{a} liblua5.1-0{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libmpdec2{a} libncurses6{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libssl1.1{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxml2{a} libxrender-dev{a} libxrender1{a} libyaml-0-2{a} lsb-base{a} m4{a} man-db{a} meson{a} mime-support{a} ninja-build{a} nlohmann-json-dev{a} pandoc{a} pandoc-data{a} pkg-config{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} x11proto-xext-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl libpng-tools lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 70.6 MB of archives. After unpacking 431 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u4 [1299 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libpython3.7-minimal armhf 3.7.3-2+deb10u2 [582 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python3.7-minimal armhf 3.7.3-2+deb10u2 [1466 kB] Get: 11 http://deb.debian.org/debian buster/main armhf python3-minimal armhf 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libmpdec2 armhf 2.4.2-2 [69.3 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython3.7-stdlib armhf 3.7.3-2+deb10u2 [1660 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python3.7 armhf 3.7.3-2+deb10u2 [330 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython3-stdlib armhf 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main armhf python3 armhf 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u2 [242 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u2 [110 kB] Get: 23 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u2 [65.6 kB] Get: 24 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 25 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 27 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 28 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 29 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 30 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 31 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 33 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 36 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 38 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+deb10u1 [597 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 44 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 45 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 46 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 47 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 48 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 49 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 50 http://deb.debian.org/debian buster/main armhf uuid-dev armhf 2.33.1-0.1 [92.6 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libblkid-dev armhf 2.33.1-0.1 [217 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libboost1.67-dev armhf 1.67.0-13+deb10u1 [8388 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libboost-chrono1.67.0 armhf 1.67.0-13+deb10u1 [231 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libboost-chrono1.67-dev armhf 1.67.0-13+deb10u1 [234 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libboost-chrono-dev armhf 1.67.0.1 [4268 B] Get: 56 http://deb.debian.org/debian buster/main armhf libboost-dev armhf 1.67.0.1 [3860 B] Get: 57 http://deb.debian.org/debian buster/main armhf libboost-filesystem1.67.0 armhf 1.67.0-13+deb10u1 [255 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libboost-system1.67-dev armhf 1.67.0-13+deb10u1 [232 kB] Get: 59 http://deb.debian.org/debian buster/main armhf libboost-filesystem1.67-dev armhf 1.67.0-13+deb10u1 [262 kB] Get: 60 http://deb.debian.org/debian buster/main armhf libboost-filesystem-dev armhf 1.67.0.1 [3684 B] Get: 61 http://deb.debian.org/debian buster/main armhf libboost-program-options1.67.0 armhf 1.67.0-13+deb10u1 [336 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libboost-program-options1.67-dev armhf 1.67.0-13+deb10u1 [385 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libboost-program-options-dev armhf 1.67.0.1 [3656 B] Get: 64 http://deb.debian.org/debian buster/main armhf libboost-random1.67.0 armhf 1.67.0-13+deb10u1 [230 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libboost-random1.67-dev armhf 1.67.0-13+deb10u1 [230 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libboost-random-dev armhf 1.67.0.1 [3648 B] Get: 67 http://deb.debian.org/debian buster/main armhf libboost-system-dev armhf 1.67.0.1 [3788 B] Get: 68 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u2 [322 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 76 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1+deb10u1 [698 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 78 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 79 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4+deb10u1 [615 kB] Get: 82 http://deb.debian.org/debian buster/main armhf libcairo-gobject2 armhf 1.16.0-4+deb10u1 [123 kB] Get: 83 http://deb.debian.org/debian buster/main armhf liblzo2-2 armhf 2.10-0.1 [49.7 kB] Get: 84 http://deb.debian.org/debian buster/main armhf libcairo-script-interpreter2 armhf 1.16.0-4+deb10u1 [151 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libexpat1-dev armhf 2.2.6-2+deb10u1 [126 kB] Get: 86 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Get: 87 http://deb.debian.org/debian buster/main armhf libpng-dev armhf 1.6.36-6 [286 kB] Get: 88 http://deb.debian.org/debian buster/main armhf libfreetype6-dev armhf 2.9.1-3+deb10u2 [492 kB] Get: 89 http://deb.debian.org/debian buster/main armhf pkg-config armhf 0.29-6 [60.7 kB] Get: 90 http://deb.debian.org/debian buster/main armhf libfontconfig1-dev armhf 2.13.1-2 [950 kB] Get: 91 http://deb.debian.org/debian buster/main armhf xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 92 http://deb.debian.org/debian buster/main armhf x11proto-dev all 2018.4-4 [251 kB] Get: 93 http://deb.debian.org/debian buster/main armhf x11proto-core-dev all 2018.4-4 [3128 B] Get: 94 http://deb.debian.org/debian buster/main armhf libxau-dev armhf 1:1.0.8-1+b2 [22.5 kB] Get: 95 http://deb.debian.org/debian buster/main armhf libxdmcp-dev armhf 1:1.1.2-3 [40.7 kB] Get: 96 http://deb.debian.org/debian buster/main armhf xtrans-dev all 1.3.5-1 [100 kB] Get: 97 http://deb.debian.org/debian buster/main armhf libpthread-stubs0-dev armhf 0.4-1 [5344 B] Get: 98 http://deb.debian.org/debian buster/main armhf libxcb1-dev armhf 1.13.1-2 [171 kB] Get: 99 http://deb.debian.org/debian buster/main armhf libx11-dev armhf 2:1.6.7-1+deb10u1 [770 kB] Get: 100 http://deb.debian.org/debian buster/main armhf libxrender-dev armhf 1:0.9.10-1 [37.8 kB] Get: 101 http://deb.debian.org/debian buster/main armhf x11proto-xext-dev all 2018.4-4 [3128 B] Get: 102 http://deb.debian.org/debian buster/main armhf libxext-dev armhf 2:1.3.3-1+b2 [103 kB] Get: 103 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 104 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB] Get: 105 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get: 106 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 107 http://deb.debian.org/debian buster/main armhf libice-dev armhf 2:1.0.9-2 [61.9 kB] Get: 108 http://deb.debian.org/debian buster/main armhf libsm-dev armhf 2:1.2.3-1 [36.1 kB] Get: 109 http://deb.debian.org/debian buster/main armhf libpixman-1-dev armhf 0.36.0-1 [486 kB] Get: 110 http://deb.debian.org/debian buster/main armhf libxcb-render0-dev armhf 1.13.1-2 [112 kB] Get: 111 http://deb.debian.org/debian buster/main armhf libxcb-shm0-dev armhf 1.13.1-2 [100 kB] Get: 112 http://deb.debian.org/debian buster/main armhf libffi-dev armhf 3.2.1-9 [154 kB] Get: 113 http://deb.debian.org/debian buster/main armhf libglib2.0-data all 2.58.3-2+deb10u2 [1110 kB] Get: 114 http://deb.debian.org/debian buster/main armhf libglib2.0-bin armhf 2.58.3-2+deb10u2 [119 kB] Get: 115 http://deb.debian.org/debian buster/main armhf python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 116 http://deb.debian.org/debian buster/main armhf python3-distutils all 3.7.3-1 [142 kB] Get: 117 http://deb.debian.org/debian buster/main armhf libglib2.0-dev-bin armhf 2.58.3-2+deb10u2 [155 kB] Get: 118 http://deb.debian.org/debian buster/main armhf libmount-dev armhf 2.33.1-0.1 [223 kB] Get: 119 http://deb.debian.org/debian buster/main armhf libpcre16-3 armhf 2:8.39-12 [238 kB] Get: 120 http://deb.debian.org/debian buster/main armhf libpcre32-3 armhf 2:8.39-12 [231 kB] Get: 121 http://deb.debian.org/debian buster/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB] Get: 122 http://deb.debian.org/debian buster/main armhf libpcre3-dev armhf 2:8.39-12 [585 kB] Get: 123 http://deb.debian.org/debian buster/main armhf libsepol1-dev armhf 2.8-1 [318 kB] Get: 124 http://deb.debian.org/debian buster/main armhf libselinux1-dev armhf 2.8-1+b1 [162 kB] Get: 125 http://deb.debian.org/debian buster/main armhf libglib2.0-dev armhf 2.58.3-2+deb10u2 [1386 kB] Get: 126 http://deb.debian.org/debian buster/main armhf libcairo2-dev armhf 1.16.0-4+deb10u1 [662 kB] Get: 127 http://deb.debian.org/debian buster/main armhf libeigen3-dev all 3.3.7-1 [850 kB] Get: 128 http://deb.debian.org/debian buster/main armhf liblua5.1-0 armhf 5.1.5-8.1+b2 [86.8 kB] Get: 129 http://deb.debian.org/debian buster/main armhf libyaml-0-2 armhf 0.2.1-1 [40.6 kB] Get: 130 http://deb.debian.org/debian buster/main armhf ninja-build armhf 1.8.2-1 [83.0 kB] Get: 131 http://deb.debian.org/debian buster/main armhf python3-pkg-resources all 40.8.0-1 [153 kB] Get: 132 http://deb.debian.org/debian buster/main armhf meson all 0.49.2-1 [281 kB] Get: 133 http://deb.debian.org/debian buster/main armhf nlohmann-json-dev all 2.1.1-1.1 [395 kB] Get: 134 http://deb.debian.org/debian buster/main armhf pandoc-data all 2.2.1-3 [329 kB] Get: 135 http://deb.debian.org/debian buster/main armhf pandoc armhf 2.2.1-3+b2 [17.5 MB] Fetched 70.6 MB in 8s (8528 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../2-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../3-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../4-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../5-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../6-libssl1.1_1.1.1d-0+deb10u4_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-0+deb10u4) ... Selecting previously unselected package libpython3.7-minimal:armhf. Preparing to unpack .../7-libpython3.7-minimal_3.7.3-2+deb10u2_armhf.deb ... Unpacking libpython3.7-minimal:armhf (3.7.3-2+deb10u2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../8-libexpat1_2.2.6-2+deb10u1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../9-python3.7-minimal_3.7.3-2+deb10u2_armhf.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u2) ... Setting up libssl1.1:armhf (1.1.1d-0+deb10u4) ... Setting up libpython3.7-minimal:armhf (3.7.3-2+deb10u2) ... Setting up libexpat1:armhf (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19827 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_armhf.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:armhf. Preparing to unpack .../2-libmpdec2_2.4.2-2_armhf.deb ... Unpacking libmpdec2:armhf (2.4.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:armhf. Preparing to unpack .../4-libreadline7_7.0-5_armhf.deb ... Unpacking libreadline7:armhf (7.0-5) ... Selecting previously unselected package libpython3.7-stdlib:armhf. Preparing to unpack .../5-libpython3.7-stdlib_3.7.3-2+deb10u2_armhf.deb ... Unpacking libpython3.7-stdlib:armhf (3.7.3-2+deb10u2) ... Selecting previously unselected package python3.7. Preparing to unpack .../6-python3.7_3.7.3-2+deb10u2_armhf.deb ... Unpacking python3.7 (3.7.3-2+deb10u2) ... Selecting previously unselected package libpython3-stdlib:armhf. Preparing to unpack .../7-libpython3-stdlib_3.7.3-1_armhf.deb ... Unpacking libpython3-stdlib:armhf (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20288 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_armhf.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.35-4+deb10u2_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../003-libmagic1_1%3a5.35-4+deb10u2_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.35-4+deb10u2_armhf.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../006-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../007-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../008-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../009-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../010-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../011-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../012-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../013-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../014-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../015-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../016-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../017-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../018-libelf1_0.176-1.1_armhf.deb ... Unpacking libelf1:armhf (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../019-dwz_0.12-3_armhf.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../020-libglib2.0-0_2.58.3-2+deb10u2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:armhf. Preparing to unpack .../021-libicu63_63.1-6+deb10u1_armhf.deb ... Unpacking libicu63:armhf (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../022-libxml2_2.9.4+dfsg1-7+deb10u1_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-7+deb10u1) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../023-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../024-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../025-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../026-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../027-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../028-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../029-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../030-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package uuid-dev:armhf. Preparing to unpack .../031-uuid-dev_2.33.1-0.1_armhf.deb ... Unpacking uuid-dev:armhf (2.33.1-0.1) ... Selecting previously unselected package libblkid-dev:armhf. Preparing to unpack .../032-libblkid-dev_2.33.1-0.1_armhf.deb ... Unpacking libblkid-dev:armhf (2.33.1-0.1) ... Selecting previously unselected package libboost1.67-dev:armhf. Preparing to unpack .../033-libboost1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-chrono1.67.0:armhf. Preparing to unpack .../034-libboost-chrono1.67.0_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-chrono1.67.0:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-chrono1.67-dev:armhf. Preparing to unpack .../035-libboost-chrono1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-chrono1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-chrono-dev:armhf. Preparing to unpack .../036-libboost-chrono-dev_1.67.0.1_armhf.deb ... Unpacking libboost-chrono-dev:armhf (1.67.0.1) ... Selecting previously unselected package libboost-dev:armhf. Preparing to unpack .../037-libboost-dev_1.67.0.1_armhf.deb ... Unpacking libboost-dev:armhf (1.67.0.1) ... Selecting previously unselected package libboost-filesystem1.67.0:armhf. Preparing to unpack .../038-libboost-filesystem1.67.0_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-filesystem1.67.0:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-system1.67-dev:armhf. Preparing to unpack .../039-libboost-system1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-system1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem1.67-dev:armhf. Preparing to unpack .../040-libboost-filesystem1.67-dev_1.67.0-13+deb10u1_armhf.deb ... Unpacking libboost-filesystem1.67-dev:armhf (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem-dev:armhf. Preparing to unpack .../041-libboost-filesystem-dev_1.67.0.1_armhf.deb ... Unpacking libboost-filesystem-dev:armhf (1.67.0.1) ... Selecting previously unselected package libboost-program-options1.67.0:armhf. 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Setting up libarchive-zip-perl (1.64-1) ... Setting up libyaml-0-2:armhf (0.2.1-1) ... Setting up libboost-program-options1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up nlohmann-json-dev (2.1.1-1.1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:armhf (1:5.35-4+deb10u2) ... Setting up libsepol1-dev:armhf (2.8-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up liblzo2-2:armhf (2.10-0.1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libffi-dev:armhf (3.2.1-9) ... Setting up libpthread-stubs0-dev:armhf (0.4-1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up ninja-build (1.8.2-1) ... Setting up xtrans-dev (1.3.5-1) ... 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Setting up libboost-system1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libmpdec2:armhf (2.4.2-2) ... Setting up pandoc-data (2.2.1-3) ... Setting up libboost-random1.67.0:armhf (1.67.0-13+deb10u1) ... Setting up libboost-random1.67-dev:armhf (1.67.0-13+deb10u1) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+deb10u1) ... Setting up libreadline7:armhf (7.0-5) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libblkid-dev:armhf (2.33.1-0.1) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libpython3.7-stdlib:armhf (3.7.3-2+deb10u2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libxau-dev:armhf (1:1.0.8-1+b2) ... Setting up libboost-filesystem1.67-dev:armhf (1.67.0-13+deb10u1) ... 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Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:armhf (2:1.6.7-1+deb10u1) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up libmount-dev:armhf (2.33.1-0.1) ... Setting up libboost-filesystem-dev:armhf (1.67.0.1) ... Setting up libpython3-stdlib:armhf (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u2) ... Setting up gettext (0.19.8.1-9) ... Setting up libxcb1-dev:armhf (1.13.1-2) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libsm-dev:armhf (2:1.2.3-1) ... Setting up libselinux1-dev:armhf (2.8-1+b1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libx11-dev:armhf (2:1.6.7-1+deb10u1) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libfreetype6-dev:armhf (2.9.1-3+deb10u2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-shm0-dev:armhf (1.13.1-2) ... Setting up libxcb-render0-dev:armhf (1.13.1-2) ... Setting up libxext-dev:armhf (2:1.3.3-1+b2) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up libxrender-dev:armhf (1:0.9.10-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up libglib2.0-dev-bin (2.58.3-2+deb10u2) ... Setting up libfontconfig1-dev:armhf (2.13.1-2) ... Setting up po-debconf (1.0.21) ... Setting up meson (0.49.2-1) ... Setting up libcairo2:armhf (1.16.0-4+deb10u1) ... Setting up libglib2.0-dev:armhf (2.58.3-2+deb10u2) ... Setting up libcairo-gobject2:armhf (1.16.0-4+deb10u1) ... Setting up libcairo-script-interpreter2:armhf (1.16.0-4+deb10u1) ... Setting up libcairo2-dev:armhf (1.16.0-4+deb10u1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/bali-phy-3.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Redelings dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build dh build --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bali-phy-3.4+dfsg' dh_auto_configure -- -Dextra-tools=false cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/arm-linux-gnueabihf --libexecdir=lib/arm-linux-gnueabihf -Dextra-tools=false The Meson build system Version: 0.49.2 Source dir: /build/bali-phy-3.4+dfsg Build dir: /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf Build type: native build Project name: bali-phy Project version: 3.4 Appending CFLAGS from environment: '-g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C compiler: cc (gcc 8.3.0 "cc (Debian 8.3.0-6) 8.3.0") Appending CXXFLAGS from environment: '-g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C++ compiler: c++ (gcc 8.3.0 "c++ (Debian 8.3.0-6) 8.3.0") Build machine cpu family: arm Build machine cpu: armv7l Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES Found pkg-config: /usr/bin/pkg-config (0.29) Dependency cairo found: YES 1.16.0 Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.67 Dependency eigen3 found: YES 3.3.7 Has header "nlohmann/json.hpp" : YES Library dl found: YES Program pandoc found: YES (/usr/bin/pandoc) Program /build/bali-phy-3.4+dfsg/tests/run-tests.py found: YES (/build/bali-phy-3.4+dfsg/tests/run-tests.py) Build targets in project: 78 Option buildtype is: plain [default: release] Found ninja-1.8.2 at /usr/bin/ninja make[1]: Leaving directory '/build/bali-phy-3.4+dfsg' dh_auto_build -O--buildsystem=meson cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 ninja -j4 -v [1/256] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /build/bali-phy-3.4+dfsg/src @git_message@ '(.*)' /build/bali-phy-3.4+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/256] c++ -Isrc/25a6634@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math -MD -MQ 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc [3/256] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' [4/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/util.cc.o' -MF 'src/25a6634@@bali-phy@sta/util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/util.cc.o' -c ../src/util.cc [5/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/io.cc.o' -MF 'src/25a6634@@bali-phy@sta/io.cc.o.d' -o 'src/25a6634@@bali-phy@sta/io.cc.o' -c ../src/io.cc [6/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc [7/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc [8/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc [9/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' -c ../src/sequence/alphabet.cc [10/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_tree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' -c ../src/tree/tree.cc [11/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' -c ../src/tools/read-trees.cc [12/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/rng.cc.o' -MF 'src/25a6634@@bali-phy@sta/rng.cc.o.d' -o 'src/25a6634@@bali-phy@sta/rng.cc.o' -c ../src/rng.cc ../src/rng.cc: In function ‘long unsigned int get_random_seed()’: ../src/rng.cc:42:12: warning: left shift count >= width of type [-Wshift-count-overflow] s <<= bits_per_read; ^~~~~~~~~~~~~ [13/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc [14/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/c++/8/valarray:38, from ../src/tools/statistics.H:24, from ../src/tools/statistics.cc:22: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/c++/8/valarray:38, from ../src/tools/statistics.H:24, from ../src/tools/statistics.cc:22: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘double statistics::quantile(std::vector, double)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘std::pair statistics::central_confidence_interval(std::vector, double)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘std::pair statistics::HPD_confidence_interval(std::vector, double)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘std::pair statistics::mode(std::vector)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘double statistics::probability_x_less_than_y(const std::valarray&, const std::valarray&)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); 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-Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' -c ../src/alignment/alignment-random.cc [20/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 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-c ../src/n_indels.cc [31/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' -c ../src/tools/distance-report.cc [32/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc [33/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' -c ../src/tools/distance-methods.cc [34/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' -c ../src/tools/joint-A-T.cc [35/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' -c ../src/dp/dp_hmm.cc [36/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc [37/256] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/25a6634@@bali-phy@sta/io.cc.o' 'src/25a6634@@bali-phy@sta/util.cc.o' 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/25a6634@@bali-phy@sta/rng.cc.o' 'src/25a6634@@bali-phy@sta/alignment_load.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment.cc.o' 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' 'src/25a6634@@bali-phy@sta/tools_partition.cc.o' 'src/25a6634@@bali-phy@sta/tools_tree-dist.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/25a6634@@bali-phy@sta/setup.cc.o' 'src/25a6634@@bali-phy@sta/tree_randomtree.cc.o' 'src/25a6634@@bali-phy@sta/util-random.cc.o' 'src/25a6634@@bali-phy@sta/tools_parsimony.cc.o' 'src/25a6634@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/25a6634@@bali-phy@sta/tools_mctree.cc.o' 'src/25a6634@@bali-phy@sta/tools_stats-table.cc.o' 'src/25a6634@@bali-phy@sta/tools_findroot.cc.o' 'src/25a6634@@bali-phy@sta/tools_optimize.cc.o' 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' 'src/25a6634@@bali-phy@sta/n_indels.cc.o' 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' [38/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_driver.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' -c ../src/parser/driver.cc [39/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_rename.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' -c ../src/parser/rename.cc In file included from /usr/include/c++/8/vector:69, from ../src/parser/rename.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/deque:66, from ../src/parser/rename.cc:5: /usr/include/c++/8/bits/deque.tcc: In member function ‘void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 deque<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../src/parser/rename.cc:2: /usr/include/c++/8/bits/stl_vector.h: In member function ‘bound_var_info renamer_state::rename_pattern(expression_ref&, bool)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [40/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::_M_erase(std::vector<_Tp, _Alloc>::iterator) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:159:5: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘std::vector desugar_state::parse_fundecls(const std::vector&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/stl_vector.h: In member function ‘expression_ref desugar_state::desugar(const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 { return _M_erase(begin() + (__position - cbegin())); } ^ /usr/include/c++/8/bits/stl_vector.h:1318:58: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 { return _M_erase(begin() + (__position - cbegin())); } ^ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘CDecls desugar_state::desugar_decls(const expression_ref&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [41/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' -c ../src/parser/desugar-case.cc In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/stl_vector.h:515:7: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In static member function ‘static _Res std::_Function_handler<_Res(_ArgTypes ...), _Functor>::_M_invoke(const std::_Any_data&, _ArgTypes&& ...) [with _Res = expression_ref; _Functor = desugar_state::match_constant(const std::vector&, const std::vector&)::; _ArgTypes = {const expression_ref&}]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_constant(const std::vector&, const std::vector&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/stl_vector.h: In member function ‘failable_expression desugar_state::match_var(const std::vector&, const std::vector&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ ../src/parser/desugar-case.cc: In member function ‘void desugar_state::clean_up_pattern(const expression_ref&, equation_info_t&)’: ../src/parser/desugar-case.cc:310:17: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 rhs.add_binding({{y, x}}); ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ ../src/parser/desugar-case.cc:330:17: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 rhs.add_binding({{y, x}}); ~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/parser/desugar-case.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘expression_ref desugar_state::def_function(const std::vector&, const expression_ref&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [42/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' -c ../src/parser/lexer.cc [43/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' -MF 'src/25a6634@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc In file included from /usr/include/c++/8/vector:69, from ../src/util/ptree.H:5, from ../src/util/ptree.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util/ptree.H:5, from ../src/util/ptree.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘void to_json(nlohmann::json&, const ptree&)’: /usr/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [44/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_exponential.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' -c ../src/math/exponential.cc [45/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc [46/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc [47/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_parser.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' -c ../src/parser/parser.cc In file included from /usr/include/c++/8/vector:64, from parser.y:14, from parser.cc:46: /usr/include/c++/8/bits/stl_vector.h: In function ‘std::vector<_Tp, _Alloc>::vector(std::initializer_list<_Tp>, const allocator_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/stl_vector.h:515:7: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 vector(initializer_list __l, ^~~~~~ In file included from /usr/include/c++/8/vector:69, from parser.y:14, from parser.cc:46: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from parser.y:14, from parser.cc:46: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from parser.y:14, from parser.cc:46: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {yy::parser::stack_symbol_type}; _Tp = yy::parser::stack_symbol_type; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void yy::stack::push(T&) [with T = yy::parser::stack_symbol_type; S = std::vector >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void yy::parser::yypush_(const char*, yy::parser::stack_symbol_type&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref yy_make_string(const string&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from parser.y:14, from parser.cc:46: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref yy_make_alt(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_lambda(const std::vector&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from parser.y:14, from parser.cc:46: /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_infix(const string&, boost::optional&, std::vector >&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ parser.y: In member function ‘virtual int yy::parser::parse()’: parser.y:887:55: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:976:55: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1131:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1132:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1133:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 parser.y:1134:45: note: parameter passing for argument of type ‘std::initializer_list’ changed in GCC 7.1 [48/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/prior.cc.o' -MF 'src/25a6634@@bali-phy@exe/prior.cc.o.d' -o 'src/25a6634@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc [49/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' -c ../src/math/eigenvalue.cc [50/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' -MF 'src/25a6634@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc [51/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc [52/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' -c ../src/mcmc/mcmc.cc In file included from /usr/include/c++/8/vector:69, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/mcmc.cc:34: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/mcmc.cc:34: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void MCMC::MoveGroupBase::add(double, const MCMC::Move&, bool)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [53/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/util_text.cc.o' -MF 'src/25a6634@@bali-phy@exe/util_text.cc.o.d' -o 'src/25a6634@@bali-phy@exe/util_text.cc.o' -c ../src/util/text.cc [54/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_parameters.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' -c ../src/models/parameters.cc In file included from /usr/include/c++/8/vector:69, from ../src/sequence/alphabet.H:27, from ../src/models/parameters.H:34, from ../src/models/parameters.cc:31: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/sequence/alphabet.H:27, from ../src/models/parameters.H:34, from ../src/models/parameters.cc:31: /usr/include/c++/8/bits/stl_vector.h: In constructor ‘data_partition_constants::data_partition_constants(Parameters*, int, const alignment&, const std::vector&, int)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [55/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc In file included from /usr/include/c++/8/vector:69, from ../src/models/TreeInterface.H:4, from ../src/models/TreeInterface.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘std::__cxx11::string write(const TreeInterface&, const std::vector >&, bool)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [56/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc [57/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' -c ../src/dp/hmm.cc [58/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' -MF 'src/25a6634@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc [59/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' -c ../src/dp/dp-array.cc [60/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_3way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' -c ../src/dp/3way.cc [61/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' -c ../src/dp/dp-matrix.cc [62/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_2way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc [63/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' -c ../src/mcmc/sample-alignment.cc [64/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc In file included from /usr/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-node.cc:28: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘int sample_node_multi(std::vector&, const std::vector >&, const std::vector&, bool, bool)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [65/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' -MF 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o.d' -o 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' -c ../src/imodel/imodel.cc [66/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_5way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc [67/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc [68/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' -c ../src/dp/dp-cube.cc [69/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc In file included from /usr/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-two-nodes.cc:29: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {log_double_t}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘int sample_two_nodes_multi(std::vector&, const std::vector&, const std::vector&, bool, bool)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [70/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc [71/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc [72/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_setup.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_setup.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_setup.cc.o' -c ../src/models/setup.cc In file included from /usr/include/c++/8/vector:69, from ../src/models/setup.cc:79: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {pretty_model_t}; _Tp = pretty_model_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In function ‘std::vector, ptree> > extract_terms(ptree&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In constructor ‘pretty_model_t::pretty_model_t(const ptree&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/models/setup.cc:79: /usr/include/c++/8/bits/stl_vector.h: In function ‘std::pair > > get_model_function(const Rules&, const ptree&, const names_in_scope_t&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/models/setup.cc:79: /usr/include/c++/8/bits/vector.tcc: In function ‘model_t get_model(const Rules&, const string&, const string&, const std::vector, std::__cxx11::basic_string > >&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/util/ptree.H:12, from ../src/models/setup.H:8, from ../src/models/setup.cc:81: /usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 basic_json(std::initializer_list init, ^~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/models/setup.cc:79: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:478:5: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/models/setup.cc:79: /usr/include/c++/8/bits/stl_vector.h: In member function ‘nlohmann::basic_json::value_type& nlohmann::basic_json::operator[](nlohmann::basic_json::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/8/bits/stl_vector.h:1225:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_fill_insert(begin() + __offset, __n, __x); ^~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/util/ptree.H:12, from ../src/models/setup.H:8, from ../src/models/setup.cc:81: /usr/include/nlohmann/json.hpp: In function ‘void to_json(nlohmann::json&, const pretty_model_t&)’: /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ In file included from /usr/include/c++/8/vector:64, from ../src/models/setup.cc:79: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [73/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' -c ../src/mcmc/sample-topology-SPR.cc In file included from /usr/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-topology-SPR.cc:30: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/tree/tree.H:31, from ../src/mcmc/sample.H:23, from ../src/mcmc/sample-topology-SPR.cc:30: /usr/include/c++/8/bits/stl_vector.h: In member function ‘std::vector spr_info::convert_to_vector(const std::map&) const [with U = log_double_t]’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [74/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_help.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_help.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_help.cc.o' -c ../src/startup/help.cc [75/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' -MF 'src/25a6634@@bali-phy@exe/probability_probability.cc.o.d' -o 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' -c ../src/probability/probability.cc [76/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/myexception.cc.o' -MF 'src/25a6634@@bali-phy@exe/myexception.cc.o.d' -o 'src/25a6634@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc [77/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc [78/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/monitor.cc.o' -MF 'src/25a6634@@bali-phy@exe/monitor.cc.o.d' -o 'src/25a6634@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc ../src/monitor.cc: In function ‘void report_mem()’: ../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cmd.str().c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~ [79/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_model.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_model.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_model.cc.o' -c ../src/models/model.cc In file included from /usr/include/c++/8/vector:69, from /usr/include/boost/detail/container_fwd.hpp:93, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from ../src/models/model.cc:23: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘std::vector model_parameter_expressions(const Model&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘void simplify(ptree&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘void add_path(ptree&, const std::vector >&, int, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void nlohmann::basic_json::push_back(nlohmann::basic_json&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [80/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' -MF 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o.d' -o 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' -c ../src/alignment/alignment-constraint.cc [81/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' -MF 'src/25a6634@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc [82/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc [83/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc [84/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/version.cc.o' -MF 'src/25a6634@@bali-phy@exe/version.cc.o.d' -o 'src/25a6634@@bali-phy@exe/version.cc.o' -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ [85/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' -MF 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' -c ../src/tools/parsimony2.cc [86/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' -MF 'src/25a6634@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc [87/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' -c ../src/mcmc/proposals.cc [88/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' -c ../src/mcmc/slice-sampling.cc [89/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' -c ../src/computation/expression/operator.cc [90/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' -c ../src/mcmc/AIS.cc In file included from /usr/include/c++/8/vector:69, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/AIS.H:4, from ../src/mcmc/AIS.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/AIS.H:4, from ../src/mcmc/AIS.cc:1: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void AIS_Sampler::go(owned_ptr&, std::ostream&, std::vector)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [91/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' -c ../src/computation/expression/constructor.cc [92/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' -c ../src/mcmc/logger.cc In file included from /usr/include/c++/8/vector:69, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/logger.cc:33: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const log_double_t&}; _Tp = log_double_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/mcmc/mcmc.H:35, from ../src/mcmc/logger.cc:33: /usr/include/c++/8/bits/stl_vector.h: In member function ‘std::__cxx11::string MCMC::Get_Rao_Blackwellized_Parameter_Function::operator()(const Model&, long int)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [93/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' -c ../src/computation/expression/expression.cc [94/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' -c ../src/mcmc/setup.cc In file included from /usr/include/c++/8/vector:69, from /usr/include/boost/program_options/errors.hpp:14, from /usr/include/boost/program_options/options_description.hpp:12, from /usr/include/boost/program_options.hpp:15, from ../src/mcmc/setup.H:34, from ../src/mcmc/setup.cc:31: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘void do_sampling(const boost::program_options::variables_map&, owned_ptr&, long int, std::ostream&, const std::vector >&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [95/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' -c ../src/computation/expression/AST_node.cc [96/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' -c ../src/computation/expression/apply.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/expression/expression_ref.H:4, from ../src/computation/expression/apply.H:4, from ../src/computation/expression/apply.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/expression/expression_ref.H:4, from ../src/computation/expression/apply.H:4, from ../src/computation/expression/apply.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref apply_expression(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [97/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' -c ../src/computation/expression/expression_ref.cc ../src/computation/expression/expression_ref.cc: In constructor ‘expression::expression(const expression_ref&, std::initializer_list)’: ../src/computation/expression/expression_ref.cc:240:1: note: parameter passing for argument of type ‘const std::initializer_list’ changed in GCC 7.1 expression::expression(const expression_ref& H, const std::initializer_list< expression_ref > S) ^~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/computation/expression/expression_ref.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/computation/expression/expression_ref.cc:3: /usr/include/c++/8/bits/stl_vector.h: In function ‘std::unique_ptr operator+(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘std::unique_ptr operator+(const expression&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [98/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' -c ../src/computation/expression/substitute.cc [99/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' -c ../src/computation/expression/indexify.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/expression/indexify.H:4, from ../src/computation/expression/indexify.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref indexify(const expression_ref&, std::vector&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref deindexify(const expression_ref&, const std::vector&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [100/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' -c ../src/computation/expression/case.cc In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/include/c++/8/bits/stl_vector.h: In function ‘bool parse_case_expression(const expression_ref&, expression_ref&, std::vector&, std::vector&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_case_expression(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref make_alt(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/case.cc:2: /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_alts(const std::vector&, const std::vector&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [101/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' -c ../src/computation/expression/tuple.cc [102/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' -c ../src/computation/expression/let.cc In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref indexed_let_expression(const std::vector&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In function ‘void get_decls(const expression_ref&, CDecls&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_decls(const CDecls&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref let_expression(const CDecls&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_topdecls(const CDecls&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/var.H:4, from ../src/computation/expression/let.cc:1: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [103/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' -c ../src/computation/expression/trim.cc In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/trim.H:4, from ../src/computation/expression/trim.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref make_trim(const expression_ref&, const std::vector&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/trim.H:4, from ../src/computation/expression/trim.cc:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/trim.H:4, from ../src/computation/expression/trim.cc:1: /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref remap_free_indices(const expression_ref&, const std::vector&, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [104/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' -c ../src/computation/expression/list.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/expression/list.H:4, from ../src/computation/expression/list.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/expression/list.H:4, from ../src/computation/expression/list.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref cons(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘std::vector get_ref_vector_from_list(const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/expression/list.H:4, from ../src/computation/expression/list.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref char_list(const string&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [105/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' -c ../src/computation/expression/var.cc [106/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' -c ../src/computation/expression/lambda.cc In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/expression/lambda.H:4, from ../src/computation/expression/lambda.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref lambda_expression(const Operator&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [107/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' -c ../src/computation/machine/args.cc [108/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' -c ../src/computation/machine/tokens.cc [109/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' -c ../src/computation/preprocess.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/machine/graph_register.H:5, from ../src/computation/preprocess.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref graph_normalize(const expression_ref&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [110/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' -c ../src/computation/machine/graph_register.cc [111/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' -c ../src/computation/machine/show_graph.cc In file included from /usr/include/c++/8/map:60, from ../src/util.H:37, from ../src/object.H:7, from ../src/computation/machine/graph_register.H:7, from ../src/computation/machine/show_graph.cc:2: /usr/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from ../src/util.H:37, from ../src/object.H:7, from ../src/computation/machine/graph_register.H:7, from ../src/computation/machine/show_graph.cc:2: /usr/include/c++/8/bits/stl_map.h: In function ‘void discover_graph_vars(const reg_heap&, int, std::map&, const std::map, int>&)’: /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [112/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' -c ../src/computation/machine/evaluate.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/machine/graph_register.H:5, from ../src/computation/machine/evaluate.cc:5: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const closure&}; _Tp = closure; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/machine/graph_register.H:5, from ../src/computation/machine/evaluate.cc:5: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void reg_heap::incremental_evaluate_from_call(int, closure&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function ‘std::pair reg_heap::incremental_evaluate_(int)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [113/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' -c ../src/computation/machine/gc.cc [114/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' -c ../src/computation/machine/reroot.cc [115/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_module.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_module.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_module.cc.o' -c ../src/computation/module.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/stl_vector.h: In function ‘std::vector peel_lambdas(expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘void parse_combinator_application(const expression_ref&, std::__cxx11::string&, std::vector&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref func_type(const expression_ref&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/set:60, from ../src/computation/module.cc:1: /usr/include/c++/8/bits/stl_tree.h: In member function ‘void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator >; _Key = var; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator >’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator >’ changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref rename_top_level(const expression_ref&, const string&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/set:60, from ../src/computation/module.cc:1: /usr/include/c++/8/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, symbol_info>; _KeyOfValue = std::_Select1st, symbol_info> >; _Compare = std::less >; _Alloc = std::allocator, symbol_info> >]’: /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from ../src/computation/module.H:5, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = symbol_info; _Compare = std::less >; _Alloc = std::allocator, symbol_info> >]’: /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h: In member function ‘void Module::export_symbol(const symbol_info&)’: /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, symbol_info>, std::_Select1st, symbol_info> >, std::less >, std::allocator, symbol_info> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, symbol_info> >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h: In member function ‘void Module::import_small_decls(const Program&)’: /usr/include/c++/8/bits/stl_map.h:892:4: note: parameter passing for argument of type ‘std::_Rb_tree_const_iterator >’ changed in GCC 7.1 { _M_t._M_insert_unique(__first, __last); } ^~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void Module::load_builtins(const module_loader&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function ‘void Module::load_constructors()’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function ‘void Module::optimize(const Program&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/module.H:7, from ../src/computation/module.cc:3: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void Module::compile(const Program&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [116/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_closure.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' -c ../src/computation/closure.cc In file included from /usr/include/c++/8/vector:69, from ../src/util.H:31, from ../src/object.H:7, from ../src/computation/closure.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘expression_ref deindexify(const closure&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [117/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_operations.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' -c ../src/computation/operations.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/operations.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure apply_op(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [118/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_context.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_context.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_context.cc.o' -c ../src/computation/context.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/closure.H:4, from ../src/computation/context.H:4, from ../src/computation/context.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [119/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' -c ../src/computation/optimization/let-float.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/optimization/let-float.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../src/computation/optimization/let-float.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘expression_ref move_lets(bool, expression_ref, std::vector >&, const std::set&, const std::set&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/computation/optimization/let-float.cc:1: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [120/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_loader.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' -c ../src/computation/loader.cc [121/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_program.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_program.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_program.cc.o' -c ../src/computation/program.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/program.H:4, from ../src/computation/program.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Module&}; _Tp = Module; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Module}; _Tp = Module; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void Program::add(const string&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/program.H:4, from ../src/computation/program.cc:1: /usr/include/c++/8/bits/stl_vector.h: In member function ‘void Program::add(const Module&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [122/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' -c ../src/mcmc/sample-tri.cc [123/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_system.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_system.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_system.cc.o' -c ../src/startup/system.cc [124/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_files.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_files.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_files.cc.o' -c ../src/startup/files.cc In file included from /usr/include/c++/8/vector:69, from /usr/include/boost/filesystem/path_traits.hpp:26, from /usr/include/boost/filesystem/path.hpp:25, from /usr/include/boost/filesystem/operations.hpp:25, from ../src/startup/files.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘void run_info(nlohmann::json&, int, int, char**)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [125/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' -c ../src/startup/A-T-model.cc In file included from /usr/include/c++/8/vector:69, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘void setup_heating(int, const boost::program_options::variables_map&, Parameters&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void nlohmann::basic_json::push_back(nlohmann::basic_json&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/computation/context.H:8, from ../src/models/model.H:39, from ../src/models/parameters.H:36, from ../src/startup/A-T-model.H:10, from ../src/startup/A-T-model.cc:1: /usr/include/nlohmann/json.hpp: In constructor ‘nlohmann::basic_json::basic_json(std::initializer_list >, bool, nlohmann::basic_json::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/nlohmann/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 basic_json(std::initializer_list init, ^~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘nlohmann::json log_summary(std::ostream&, std::ostream&, std::ostream&, const std::vector&, const std::vector&, const std::vector&, const model_t&, const Parameters&, const boost::program_options::variables_map&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from ../src/util/json.hh:3, from ../src/computation/context.H:8, from ../src/models/model.H:39, from ../src/models/parameters.H:36, from ../src/startup/A-T-model.H:10, from ../src/startup/A-T-model.cc:1: /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ /usr/include/nlohmann/json.hpp:2168:54: note: parameter passing for argument of type ‘std::initializer_list >’ changed in GCC 7.1 return basic_json(init, false, value_t::array); ^ In file included from /usr/include/c++/8/vector:69, from ../src/startup/A-T-model.H:4, from ../src/startup/A-T-model.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {model_t}; _Tp = model_t; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘std::vector get_imodels(const Rules&, const shared_items >&, const SequenceTree&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘owned_ptr create_A_and_T_model(const Rules&, boost::program_options::variables_map&, const std::shared_ptr&, std::ostream&, std::ostream&, std::ostream&, nlohmann::json&, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [126/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ebeda7108d0d469d791d40480fa89d21bd5958f6.dat [127/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' -c ../src/startup/loggers.cc [128/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' -c ../src/startup/cmd_line.cc [129/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_rules.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_rules.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_rules.cc.o' -c ../src/models/rules.cc In file included from /usr/include/c++/8/vector:69, from ../src/models/rules.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘ptree parse_constraints(const ptree&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json, std::allocator >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, std::allocator > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void nlohmann::basic_json::push_back(nlohmann::basic_json&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/set:60, from ../src/models/rules.cc:2: /usr/include/c++/8/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, nlohmann::basic_json<> >; _KeyOfValue = std::_Select1st, nlohmann::basic_json<> > >; _Compare = std::less >; _Alloc = std::allocator, nlohmann::basic_json<> > >]’: /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less >, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from ../src/models/rules.H:5, from ../src/models/rules.cc:3: /usr/include/c++/8/bits/stl_map.h: In member function ‘nlohmann::basic_json nlohmann::basic_json::parser::parse_internal(bool) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’: /usr/include/c++/8/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, nlohmann::basic_json<> >, std::_Select1st, nlohmann::basic_json<> > >, std::less >, std::allocator, nlohmann::basic_json<> > > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, nlohmann::basic_json<> > >’} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [130/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_parse.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_parse.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_parse.cc.o' -c ../src/models/parse.cc In file included from /usr/include/c++/8/vector:69, from ../src/models/parse.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair, std::allocator >, ptree>&}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/models/parse.cc:2: /usr/include/c++/8/bits/stl_vector.h: In function ‘void handle_positional_args(ptree&, const Rules&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [131/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_unification.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_unification.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_unification.cc.o' -c ../src/models/unification.cc In file included from /usr/include/c++/8/set:60, from ../src/models/unification.H:5, from ../src/models/unification.cc:1: /usr/include/c++/8/bits/stl_tree.h: In member function ‘std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = std::__cxx11::basic_string; _Val = std::pair, ptree>; _KeyOfValue = std::_Select1st, ptree> >; _Compare = std::less >; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type ‘std::_Rb_tree, std::pair, ptree>, std::_Select1st, ptree> >, std::less >, std::allocator, ptree> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator, ptree> >’} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [132/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_translate.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_translate.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_translate.cc.o' -c ../src/models/translate.cc In file included from /usr/include/c++/8/vector:69, from ../src/models/translate.H:4, from ../src/models/translate.cc:1: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair, std::allocator >, ptree>&}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector, ptree> >::iterator’ {aka ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair, std::allocator >, ptree>}; _Tp = std::pair, ptree>; _Alloc = std::allocator, ptree> >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘std::vector, ptree> > extend_scope(const ptree&, int, const std::vector, ptree> >&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/models/translate.H:4, from ../src/models/translate.cc:1: /usr/include/c++/8/bits/stl_vector.h: In function ‘equations pass2(const Rules&, const ptree&, ptree&, std::set >, const std::vector, ptree> >&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, ptree>*, std::vector, ptree> > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [133/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' -MF 'src/25a6634@@bali-phy@exe/startup_paths.cc.o.d' -o 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' -c ../src/startup/paths.cc [134/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' -c ../src/computation/optimization/simplifier.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/optimization/simplifier.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/operations.H:4, from ../src/computation/optimization/simplifier.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function ‘substitution simplify_decls(const simplifier_options&, CDecls&, const substitution&, in_scope_set&, bool)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [135/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -c ../src/computation/expression/bool.cc [136/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' -c ../src/computation/optimization/inliner.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/optimization/inliner.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/computation/operations.H:4, from ../src/computation/optimization/inliner.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function ‘inline_context unknown_context()’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘inline_context argument_context(const inline_context&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘inline_context case_object_context(expression_ref, const inline_context&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘inline_context apply_object_context_one_arg(const inline_context&, const expression_ref&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [137/256] c++ -Isrc/builtins/2382537@@Array@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Array@sha/Array.cc.o' -MF 'src/builtins/2382537@@Array@sha/Array.cc.o.d' -o 'src/builtins/2382537@@Array@sha/Array.cc.o' -c ../src/builtins/Array.cc [138/256] c++ -o src/builtins/Array.so 'src/builtins/2382537@@Array@sha/Array.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Array.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [139/256] c++ -Isrc/builtins/2382537@@Alphabet@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Alphabet.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_alphabet_letters(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [140/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc In file included from /usr/include/c++/8/vector:69, from ../src/computation/operations.H:4, from ../src/computation/optimization/occurrence.cc:4: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::pair&}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector >::iterator’ {aka ‘__gnu_cxx::__normal_iterator*, std::vector > >’} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from ../src/computation/operations.H:4, from ../src/computation/optimization/occurrence.cc:4: /usr/include/c++/8/bits/stl_vector.h: In function ‘std::vector > > occurrence_analyze_decls(CDecls, std::set&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘std::pair > occurrence_analyzer(const expression_ref&, var_context)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [141/256] c++ -Isrc/builtins/2382537@@Data@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Data@sha/Data.cc.o' -MF 'src/builtins/2382537@@Data@sha/Data.cc.o.d' -o 'src/builtins/2382537@@Data@sha/Data.cc.o' -c ../src/builtins/Data.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/Data.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_read_file(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [142/256] c++ -Isrc/builtins/2382537@@Prelude@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -MF 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o.d' -o 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -c ../src/builtins/Prelude.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Prelude.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Prelude.cc:2: /usr/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_vector_from_list(OperationArgs&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_error(OperationArgs&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [143/256] c++ -o src/builtins/Data.so 'src/builtins/2382537@@Data@sha/Data.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Data.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [144/256] c++ -o src/builtins/Prelude.so 'src/builtins/2382537@@Prelude@sha/Prelude.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Prelude.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [145/256] c++ -o src/builtins/Alphabet.so 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alphabet.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [146/256] c++ -o src/bali-phy 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' 'src/25a6634@@bali-phy@exe/prior.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' 'src/25a6634@@bali-phy@exe/util_text.cc.o' 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/25a6634@@bali-phy@exe/models_setup.cc.o' 'src/25a6634@@bali-phy@exe/startup_help.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' 'src/25a6634@@bali-phy@exe/models_model.cc.o' 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/25a6634@@bali-phy@exe/monitor.cc.o' 'src/25a6634@@bali-phy@exe/myexception.cc.o' 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' 'src/25a6634@@bali-phy@exe/version.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/25a6634@@bali-phy@exe/computation_module.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' 'src/25a6634@@bali-phy@exe/computation_context.cc.o' 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/25a6634@@bali-phy@exe/computation_program.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' 'src/25a6634@@bali-phy@exe/startup_files.cc.o' 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' 'src/25a6634@@bali-phy@exe/startup_system.cc.o' 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' 'src/25a6634@@bali-phy@exe/models_rules.cc.o' 'src/25a6634@@bali-phy@exe/models_parse.cc.o' 'src/25a6634@@bali-phy@exe/models_translate.cc.o' 'src/25a6634@@bali-phy@exe/models_unification.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [147/256] c++ -Isrc/builtins/2382537@@Pair@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -MF 'src/builtins/2382537@@Pair@sha/Pair.cc.o.d' -o 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -c ../src/builtins/Pair.cc [148/256] c++ -o src/builtins/Pair.so 'src/builtins/2382537@@Pair@sha/Pair.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Pair.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [149/256] c++ -Isrc/builtins/2382537@@Modifiables@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -MF 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o.d' -o 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -c ../src/builtins/Modifiables.cc [150/256] c++ -o src/builtins/Modifiables.so 'src/builtins/2382537@@Modifiables@sha/Modifiables.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Modifiables.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [151/256] c++ -Isrc/builtins/2382537@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Range@sha/Range.cc.o' -MF 'src/builtins/2382537@@Range@sha/Range.cc.o.d' -o 'src/builtins/2382537@@Range@sha/Range.cc.o' -c ../src/builtins/Range.cc [152/256] c++ -Isrc/builtins/2382537@@Alignment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -MF 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o.d' -o 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -c ../src/builtins/Alignment.cc [153/256] c++ -o src/builtins/Alignment.so 'src/builtins/2382537@@Alignment@sha/Alignment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Alignment.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [154/256] c++ -Isrc/builtins/2382537@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/PopGen.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/builtins/PopGen.cc:3: /usr/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_remove_2nd_allele(OperationArgs&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/builtins/PopGen.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_read_phase_file(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_allele_frequency_spectrum(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [155/256] c++ -o src/builtins/PopGen.so 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [156/256] c++ -o src/builtins/Range.so 'src/builtins/2382537@@Range@sha/Range.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Range.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [157/256] c++ -Isrc/builtins/2382537@@Distribution@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/Distribution.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const expression_ref&}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/builtins/Distribution.cc:2: /usr/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_CRP_density(OperationArgs&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘closure builtin_function_sample_categorical(OperationArgs&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/builtins/Distribution.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_sample_CRP(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [158/256] c++ -o src/builtins/Distribution.so 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [159/256] c++ -Isrc/builtins/2382537@@MCMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -MF 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o.d' -o 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -c ../src/builtins/MCMC.cc [160/256] c++ -o src/builtins/MCMC.so 'src/builtins/2382537@@MCMC@sha/MCMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,MCMC.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [161/256] c++ -Isrc/builtins/2382537@@Vector@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -MF 'src/builtins/2382537@@Vector@sha/Vector.cc.o.d' -o 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -c ../src/builtins/Vector.cc [162/256] c++ -o src/builtins/Vector.so 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [163/256] c++ -Isrc/builtins/2382537@@Environment@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -MF 'src/builtins/2382537@@Environment@sha/Environment.cc.o.d' -o 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -c ../src/builtins/Environment.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/../util.H:31, from ../src/builtins/../object.H:7, from ../src/builtins/../computation/machine/args.H:4, from ../src/builtins/Environment.cc:2: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {expression_ref}; _Tp = expression_ref; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_getArgs(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [164/256] c++ -o src/builtins/Environment.so 'src/builtins/2382537@@Environment@sha/Environment.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Environment.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [165/256] c++ -Isrc/builtins/2382537@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -MF 'src/builtins/2382537@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc [166/256] c++ -o src/builtins/SModel.so 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [167/256] c++ -Isrc/builtins/2382537@@Real@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Real@sha/Real.cc.o' -MF 'src/builtins/2382537@@Real@sha/Real.cc.o.d' -o 'src/builtins/2382537@@Real@sha/Real.cc.o' -c ../src/builtins/Real.cc [168/256] c++ -o src/builtins/Real.so 'src/builtins/2382537@@Real@sha/Real.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [169/256] c++ -Isrc/25a6634@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -MF 'src/25a6634@@model_P@exe/tools_model_P.cc.o.d' -o 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc In file included from /usr/include/c++/8/vector:69, from ../src/tools/model_P.cc:21: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/tools/model_P.cc:21: /usr/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [170/256] c++ -o src/model_P 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [171/256] c++ -Isrc/25a6634@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc [172/256] c++ -Isrc/builtins/2382537@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -MF 'src/builtins/2382537@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc In file included from /usr/include/c++/8/vector:69, from ../src/builtins/SMC.cc:3: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘log_double_t smc(double, std::vector, std::vector, const alignment&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘closure builtin_function_smc_density(OperationArgs&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [173/256] c++ -o src/builtins/SMC.so 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [174/256] c++ -o src/stats-select 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [175/256] c++ -Isrc/25a6634@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -MF 'src/25a6634@@statreport@exe/tools_statreport.cc.o.d' -o 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/tools/statreport.cc:27: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/tools/statreport.cc:27: /usr/include/c++/8/bits/stl_vector.h: In function ‘int get_burn_in(const std::vector&, double, int)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘void show_median(boost::program_options::variables_map&, const string&, const std::vector >&, int, const std::vector&, bool, double&, double&, double&)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/tools/statreport.cc:27: /usr/include/c++/8/bits/stl_vector.h: In function ‘int main(int, char**)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../src/util.H:34, from ../src/tools/statreport.cc:30: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [176/256] c++ -o src/statreport 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [177/256] c++ -Isrc/25a6634@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc [178/256] c++ -o src/alignment-gild 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [179/256] c++ -Isrc/25a6634@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc [180/256] c++ -o src/alignment-consensus 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [181/256] c++ -Isrc/25a6634@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc [182/256] c++ -o src/alignment-chop-internal 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [183/256] c++ -Isrc/25a6634@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc [184/256] c++ -o src/alignment-max 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [185/256] c++ -Isrc/25a6634@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc [186/256] c++ -Isrc/25a6634@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc [187/256] c++ -o src/alignment-info 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [188/256] c++ -Isrc/25a6634@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc [189/256] c++ -o src/alignment-indices 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [190/256] c++ -o src/alignment-find 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [191/256] c++ -Isrc/25a6634@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc [192/256] c++ -o src/alignment-translate 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [193/256] c++ -Isrc/25a6634@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc [194/256] c++ -o src/tree-mean-lengths 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [195/256] c++ -Isrc/25a6634@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc [196/256] c++ -o src/alignment-cat 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [197/256] c++ -Isrc/25a6634@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o.d' -o 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -c ../src/tools/trees-consensus.cc In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Distance = int; _Tp = std::pair >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from ../src/tools/trees-consensus.cc:23: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator > >}; _Tp = std::pair >; _Alloc = std::allocator > >]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, ^~~~~~~~~~~ /usr/include/c++/8/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >*, std::vector > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1672:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__make_heap(__first, __middle, __comp); ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/tools/trees-consensus.cc:23: /usr/include/c++/8/bits/vector.tcc: In function ‘std::vector > > get_consensus_levels(const string&)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-consensus.cc:21: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../src/tools/trees-consensus.cc:23: /usr/include/c++/8/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >*, std::vector > > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [198/256] c++ -o src/trees-consensus 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [199/256] c++ -Isrc/25a6634@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc [200/256] c++ -o src/mctree-mean-lengths 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [201/256] c++ -Isrc/25a6634@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o.d' -o 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -c ../src/tools/trees-to-SRQ.cc [202/256] c++ -Isrc/25a6634@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -MF 'src/25a6634@@pickout@exe/tools_pickout.cc.o.d' -o 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc [203/256] c++ -o src/trees-to-SRQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [204/256] c++ -o src/pickout 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [205/256] c++ -Isrc/25a6634@@cut-range@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -MF 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o.d' -o 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -c ../src/tools/cut-range.cc [206/256] c++ -o src/cut-range 'src/25a6634@@cut-range@exe/tools_cut-range.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [207/256] c++ -Isrc/25a6634@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc [208/256] c++ -o src/trees-distances 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [209/256] c++ -Isrc/25a6634@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -MF 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o.d' -o 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -c ../src/tools/alignments-diff.cc [210/256] c++ -o src/alignments-diff 'src/25a6634@@alignments-diff@exe/tools_alignments-diff.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [211/256] c++ -Isrc/25a6634@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc [212/256] c++ -o src/alignment-thin 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [213/256] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc [214/256] c++ -Isrc/25a6634@@tree-tool@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc [215/256] c++ -o src/tree-tool 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [216/256] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -c ../src/tools/bootstrap.cc [217/256] c++ -Isrc/25a6634@@bali-subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -MF 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o.d' -o 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc [218/256] c++ -o src/bali-subsample 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [219/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_2b07eeb310c9dfd5b9b04d4158ec86e2012626ec.dat [220/256] c++ -Isrc/25a6634@@alignment-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -MF 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o.d' -o 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -c ../src/tools/alignment-distances.cc In file included from /usr/include/c++/8/vector:69, from ../src/tools/alignment-distances.cc:23: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘int main(int, char**)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [221/256] c++ -o src/alignment-distances 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [222/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1bdfadcbc4cc1df41a926e1b655c3eb8e5201c82.dat [223/256] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc In file included from /usr/include/c++/8/vector:69, from ../src/tree/tree.H:31, from ../src/tools/alignment-draw.cc:23: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘std::vector split(const string&, char) [with T = double]’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ [224/256] c++ -o src/alignment-draw 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [225/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_1b2fe89474f220b26f8f3ac7483ccecd51efdc08.dat [226/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_4c8af11a2d2eed58a32c8710f93a91ee70eee79f.dat [227/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_bb62beb830ee89d1f6fc69e604df14f1b5bf6c4f.dat [228/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_56a6e3b05763b0f3e98ab487e875bfa9ddfae5f3.dat [229/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ae1ec037f11732e8c77d4d8cdf4af20d68ce7f47.dat [230/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_756a201aafaf0bedf312b26b4184b7c1f989b8d2.dat [231/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a6e681fd873c793ceca0cbc9051da2b06d578f5f.dat [232/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_27b16b56634aa5d6cb8b3b25c97324b8030a3321.dat [233/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_f0b7fa5bb218496dcc1b8157aefdb5d861a0b5ed.dat [234/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_9f75f4be7c9f424f6e9da447b7f4225b734f9a09.dat [235/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_d894f0cdc4820dd0497e8f2f3a2566a065716dbe.dat [236/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_37c404ca99b685fce407bc712685df29f763896f.dat [237/256] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-bootstrap.cc:35: /usr/include/c++/8/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../src/tools/trees-bootstrap.cc:35: /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function ‘double greater_than(const std::valarray&, std::valarray, double)’: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [238/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ccaff7f1fb416034d70a1914dbf84a53d3d22802.dat [239/256] c++ -o src/trees-bootstrap 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src [240/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a648b16726c403c866359cd8159312374bad643d.dat [241/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_4083bd5bcc81824883d93361b0a4c13530da3a4f.dat [242/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a459d19aee101d63750a1422909602ed350efc50.dat [243/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_47e93bf13207d2d60ee506de0128222b0f7cacc7.dat [244/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_fa8632e456239ee5e59f3cc47877c867d3a595c0.dat [245/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a1d8f933dbe498fb1be2e0bf73547ca4623c5617.dat [246/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_04d5a01ed814f3fdb1b51b4990f32484ef58d0db.dat [247/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_ba5a699587eeaa12bd6014044baad0be8601c8bb.dat [248/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_b3bce082ce4072555f57058cca84f78b5cfa4a13.dat [249/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a4182ac3c869d01d9d770fae1d92ab92113b6b7a.dat [250/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_8bfa9d3780067b6d6145e9564ce2c60a15f8126b.dat [251/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_b7ecf6420c16dd0c29cf9ac15bd8bc1b560bd38a.dat [252/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_80b0acff21af724a26be5183003a5e0b888b2d1b.dat [253/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_50b09fa36af611086a576478f3dca6f44458a7c8.dat [254/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-private/meson_exe_pandoc_a2d4ab9f0332e9171af647e29263eb30290862bb.dat [255/256] c++ -Isrc/25a6634@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/arm-linux-gnueabihf/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc In file included from /usr/include/c++/8/vector:69, from ../src/tools/draw-tree.cc:23: /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {circular_range}; _Tp = circular_range; _Alloc = std::allocator]’: /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type ‘std::vector::iterator’ {aka ‘__gnu_cxx::__normal_iterator >’} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In function ‘void equalize_daylight(tree_layout&, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘void equalize_daylight_greedy(tree_layout&, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In function ‘bool subtrees_of_node_overlap(tree_layout&, int)’: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../src/tools/draw-tree.cc:23: /usr/include/c++/8/bits/stl_vector.h: In member function ‘virtual double energy2::operator()(const graph_layout&, std::vector&) const’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In function ‘MC_tree_with_lengths get_MC_tree_with_lengths(const string&)’: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [256/256] c++ -o src/draw-tree 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g0 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono /usr/lib/arm-linux-gnueabihf/libcairo.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/src dh_auto_test -O--buildsystem=meson cd obj-arm-linux-gnueabihf && LC_ALL=C.UTF-8 MESON_TESTTHREADS=4 ninja test [1/4] Generating git-version.h with a custom command. [1/2] Running all tests. 1/30 bali-phy version OK 0.19 s 2/30 bali-phy help OK 0.13 s 3/30 bali-phy 5d test OK 18.32 s 4/30 bali-phy 5d +A 50 OK 108.33 s 5/30 bali-phy 5d -A 200 OK 43.06 s 6/30 model_P --help OK 0.11 s 7/30 statreport --help OK 0.15 s 8/30 stats-select --help OK 0.07 s 9/30 alignment-gild --help OK 0.10 s 10/30 alignment-consensus --help OK 0.17 s 11/30 alignment-max --help OK 0.12 s 12/30 alignment-chop-internal --help OK 0.10 s 13/30 alignment-indices --help OK 0.10 s 14/30 alignment-info --help OK 0.16 s 15/30 alignment-cat --help OK 0.15 s 16/30 alignment-translate --help OK 0.11 s 17/30 alignment-find --help OK 0.15 s 18/30 trees-consensus --help OK 0.23 s 19/30 tree-mean-lengths --help OK 0.09 s 20/30 mctree-mean-lengths --help OK 0.12 s 21/30 trees-to-SRQ --help OK 0.10 s 22/30 pickout --help OK 0.10 s 23/30 cut-range --help OK 0.11 s 24/30 trees-distances --help OK 0.11 s 25/30 alignment-thin --help OK 0.11 s 26/30 alignments-diff --help OK 0.12 s 27/30 tree-tool --help OK 0.33 s 28/30 alignment-distances --help OK 0.11 s 29/30 subsample --help OK 0.14 s 30/30 bali-phy testsuite OK 1286.79 s Ok: 30 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/bali-phy-3.4+dfsg/obj-arm-linux-gnueabihf/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=meson dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install -O--buildsystem=meson cd obj-arm-linux-gnueabihf && DESTDIR=/build/bali-phy-3.4\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/4] Generating git-version.h with a custom command. [1/2] Installing files. Installing subdir /build/bali-phy-3.4+dfsg/modules to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Alignment.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/SMC.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Prelude.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Range.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Tree.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Distributions.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/SModel.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/MCMC.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/PopGen.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Alphabet.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/IModel.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Parameters.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Data/Ord.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Bool.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/List.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Tuple.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/ReadFile.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Function.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/JSON.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Maybe.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/SModel/Nucleotides.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/ReversibleMarkov.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Codons.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Doublets.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Likelihood.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Frequency.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/System/Environment.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/System Installing /build/bali-phy-3.4+dfsg/modules/Compiler/Real.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /build/bali-phy-3.4+dfsg/modules/Compiler/Base.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /build/bali-phy-3.4+dfsg/modules/Compiler/Num.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /build/bali-phy-3.4+dfsg/modules/Control/Monad.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Control Installing /build/bali-phy-3.4+dfsg/modules/Foreign/Vector.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Foreign Installing subdir /build/bali-phy-3.4+dfsg/functions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions Installing /build/bali-phy-3.4+dfsg/functions/models/fMutSel.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f1x4.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rs07_relaxed_rates.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/dNdS.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/fe.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rs05.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/get_q.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/lg08.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m3.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gy94_ext.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/lg08_freq.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/multiMixtureModel.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x3.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m7.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m1a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/fMutSel0.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/inv.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mut_sel.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f81.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gtr_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x3_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x2_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/jtt.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mg94.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/sample.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rna_16a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/hky85_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m8.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/k80.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/equ.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/hky85.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gwF.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x3x3.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m2a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f3x4.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/density.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mg94k.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gtr.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mixture.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m8a_test.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/pam.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/multi_rate.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x2x2.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/tn93_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rs07.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/tn93.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gy94.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/empirical.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m3_test.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/jc69.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m2a_test.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mg94_ext.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/branch_site.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x2.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/wag.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m8a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/wag_freq.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f61.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/Rates/gamma.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /build/bali-phy-3.4+dfsg/functions/models/Rates/free.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /build/bali-phy-3.4+dfsg/functions/models/Rates/log_normal.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /build/bali-phy-3.4+dfsg/functions/models/Frequencies/uniform.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Frequencies Installing /build/bali-phy-3.4+dfsg/functions/distributions/log_gamma.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/uniform.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/log_laplace.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/gamma.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/dirichlet_on.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/bernoulli.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/normal.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/log_normal.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/geometric.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/beta.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/laplace.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/binomial.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/poisson.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/exponential.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/uniform_int.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/dirichlet.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/iid.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/functions/letters.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/sqrt.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/standard_code.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/div.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/rna.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/exp.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/map.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/mul.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/aa.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/sin.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/tan.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/dna.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/cos.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/length.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/getNucleotides.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/zip.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/num_branches.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/uniform_discretize.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/getAminoAcids.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/log.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/quantile.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/take.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/getAlphabet.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/intToDouble.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/add.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/zipWith.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/sub.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/codons.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/replicate.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/unit_mixture.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/letter_pairs.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/constructors/Pair.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /build/bali-phy-3.4+dfsg/functions/functions/constructors/Cons.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /build/bali-phy-3.4+dfsg/functions/functions/constructors/Nil.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing subdir /build/bali-phy-3.4+dfsg/help to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-3.4+dfsg/help/parameters.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-3.4+dfsg/help/alphabets.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-3.4+dfsg/help/parameters/priors.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing /build/bali-phy-3.4+dfsg/help/alphabets/Codons.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/alphabets/Doublets.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/alphabets/genetic-code.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/alphabets/Triplets.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/commands/imodel.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/seed.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/print.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/tree.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/iterations.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/Rao-Blackwellize.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/enable.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/model.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/disable.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/unalign.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/name.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/package-path.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/version.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/verbose.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/initial-value.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/test.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/config.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/branch-lengths.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/align.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/smodel.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/set.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/subsample.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/pre-burnin.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/link.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/alphabet.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/scale.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing subdir /build/bali-phy-3.4+dfsg/examples to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /build/bali-phy-3.4+dfsg/examples/models/Demo5.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo1.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/ys to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo3.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/LinearRegression.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/xs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo4.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo2.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/AirLine.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/CoalMine.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/HIVSIV.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/NOTES.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc.gb to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/keep.pl to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/papain.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/48b.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/paper.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.aln to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/table1.accessions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/other.accessions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/additional.accessions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/ITS/5.8S.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-3.4+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-3.4+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/many.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/some.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/bglobin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/many-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/10-globins.xml to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/globins.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Enolase/enolase-38.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/bali-phy-3.4+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.command to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/config2.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/orig.nex to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/cleaned.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/config.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/README.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/orig.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing src/bali-phy to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/statreport to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/stats-select to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-gild to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-consensus to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-max to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-indices to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-info to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-cat to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-translate to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-find to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-consensus to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/pickout to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/cut-range to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-distances to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-thin to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignments-diff to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/tree-tool to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-distances to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/bali-subsample to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-draw to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/draw-tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/developer.html to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /build/bali-phy-3.4+dfsg/scripts/bp-analyze to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing /build/bali-phy-3.4+dfsg/scripts/bali-phy-pkg to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing /build/bali-phy-3.4+dfsg/scripts/compare-runs.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/compare-runs2.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot1.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot2.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot3.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot2-3D.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot1-3D.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot3-3D.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/doc/README.html to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /build/bali-phy-3.4+dfsg/doc/README.xhtml to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /build/bali-phy-3.4+dfsg/doc/README.pdf to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installinit -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson dh_missing -O--buildsystem=meson dh_strip -O--buildsystem=meson dh_makeshlibs -O--buildsystem=meson dh_shlibdeps -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _Z8binomialid: it's probably a plugin dpkg-shlibdeps: warning: 36 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/stats-select contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _ZN6CodonsC1ERK11NucleotidesRK10AminoAcidsRK12Genetic_Code: it's probably a plugin dpkg-shlibdeps: warning: 23 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZN16checked_ifstreamC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_: it's probably a plugin dpkg-shlibdeps: warning: 6 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-bootstrap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-to-SRQ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-phy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZNK20pairwise_alignment_t7length1Ev: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-translate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/tree-tool contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN11constructorC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi: it's probably a plugin dpkg-shlibdeps: warning: 11 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/pickout contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZN11EigenValuesC1ERKN8bali_phy6matrixIdEE: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-chop-internal contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-find contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZN8reg_heap33incremental_evaluate_unchangeableEi: it's probably a plugin dpkg-shlibdeps: warning: 25 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-draw contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-indices contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-thin contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/statreport contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/trees-distances contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-gild contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZNK13OperationArgs9referenceEi: it's probably a plugin dpkg-shlibdeps: warning: 16 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/bali-subsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignments-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-max contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/cut-range contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/model_P contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/mctree-mean-lengths contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 4 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-cat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/draw-tree contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/bin/alignment-consensus contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.4+dfsg-1_armhf.deb'. dpkg-deb: building package 'bali-phy' in '../bali-phy_3.4+dfsg-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bali-phy_3.4+dfsg-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/26842/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/26842/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/26842 and its subdirectories I: Current time: Tue Feb 16 16:29:56 +14 2021 I: pbuilder-time-stamp: 1613442596