I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 3 23:49:50 -12 2020 I: pbuilder-time-stamp: 1596541790 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [logol_1.7.9-1.dsc] I: copying [./logol_1.7.9.orig.tar.bz2] I: copying [./logol_1.7.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 26 02:26:55 2018 -12 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./logol_1.7.9-1.dsc dpkg-source: info: extracting logol in logol-1.7.9 dpkg-source: info: unpacking logol_1.7.9.orig.tar.bz2 dpkg-source: info: unpacking logol_1.7.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_drmaa_support dpkg-source: info: applying fixLibPath dpkg-source: info: applying setDebianDirs dpkg-source: info: applying fix_doc_generation dpkg-source: info: applying remove_rubygems_usage dpkg-source: info: applying fix_antlr35 dpkg-source: info: applying fix_swipl_declarations dpkg-source: info: applying fix_swipl_foreign_load dpkg-source: info: applying remove_test I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15944/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='9ab6c6496b994adab3424bb5645cc283' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15944' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.UUsonlH78d/pbuilderrc_QmB9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.UUsonlH78d/b1 --logfile b1/build.log logol_1.7.9-1.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtk1a 4.19.0-10-armmp-lpae #1 SMP Debian 4.19.132-1 (2020-07-24) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 2 20:26 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/15944/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), default-jdk, ant, ruby, gawk, swi-prolog (>= 6.4.1-3), libbiojava-java, antlr3, libcommons-cli-java, libcommons-collections3-java, libcommons-configuration-java, libcommons-lang-java, libcommons-logging-java, libxalan2-java, libxerces2-java, junit4, libmail-java, liblog4j1.2-java, texlive, texlive-latex-extra, tex4ht, ant-optional, cassiopee, ruby-cassiopee, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on ruby; however: Package ruby is not installed. pbuilder-satisfydepends-dummy depends on gawk; however: Package gawk is not installed. pbuilder-satisfydepends-dummy depends on swi-prolog (>= 6.4.1-3); however: Package swi-prolog is not installed. pbuilder-satisfydepends-dummy depends on libbiojava-java; however: Package libbiojava-java is not installed. pbuilder-satisfydepends-dummy depends on antlr3; however: Package antlr3 is not installed. pbuilder-satisfydepends-dummy depends on libcommons-cli-java; however: Package libcommons-cli-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-collections3-java; however: Package libcommons-collections3-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-configuration-java; however: Package libcommons-configuration-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-lang-java; however: Package libcommons-lang-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-logging-java; however: Package libcommons-logging-java is not installed. pbuilder-satisfydepends-dummy depends on libxalan2-java; however: Package libxalan2-java is not installed. pbuilder-satisfydepends-dummy depends on libxerces2-java; however: Package libxerces2-java is not installed. pbuilder-satisfydepends-dummy depends on junit4; however: Package junit4 is not installed. pbuilder-satisfydepends-dummy depends on libmail-java; however: Package libmail-java is not installed. pbuilder-satisfydepends-dummy depends on liblog4j1.2-java; however: Package liblog4j1.2-java is not installed. pbuilder-satisfydepends-dummy depends on texlive; however: Package texlive is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on tex4ht; however: Package tex4ht is not installed. pbuilder-satisfydepends-dummy depends on ant-optional; however: Package ant-optional is not installed. pbuilder-satisfydepends-dummy depends on cassiopee; however: Package cassiopee is not installed. pbuilder-satisfydepends-dummy depends on ruby-cassiopee; however: Package ruby-cassiopee is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} antlr3{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} cassiopee{a} chrpath{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gawk{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} java-common{a} junit4{a} libactivation-java{a} libantlr3-runtime-java{a} libapache-pom-java{a} libarchive-zip-perl{a} libarchive13{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbiojava-java{a} libbiojava1.7-java{a} libboost-regex1.67.0{a} libboost-serialization1.67.0{a} libbrotli1{a} libbsd-dev{a} libbsd0{a} libbytecode-java{a} libcairo2{a} libcassie1v5{a} libcommons-cli-java{a} libcommons-collections3-java{a} libcommons-configuration-java{a} libcommons-dbcp-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcommons-pool-java{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdbus-1-3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-etnaviv1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit-dev{a} libedit2{a} libel-api-java{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgflags2.2{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgmp-dev{a} libgmpxx4ldbl{a} libgoogle-glog0v5{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libhamcrest-java{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libhsqldb-java{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libjaxp1.3-java{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjsp-api-java{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libllvm7{a} liblog4j1.2-java{a} libmagic-mgc{a} libmagic1{a} libmail-java{a} libncurses-dev{a} libncurses6{a} libnspr4{a} libnss3{a} libopenjp2-7{a} libossp-uuid16{a} libpaper-utils{a} libpaper1{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline-dev{a} libreadline7{a} libruby2.5{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libservlet3.1-java{a} libsigsegv2{a} libsm6{a} libssl1.1{a} libstringtemplate4-java{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebsocket-api-java{a} libwoff1{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxalan2-java{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxerces2-java{a} libxext6{a} libxfixes3{a} libxft2{a} libxi6{a} libxinerama1{a} libxml-commons-external-java{a} libxml-commons-resolver1.1-java{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libxxhash0{a} libyaml-0-2{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mime-support{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} poppler-data{a} preview-latex-style{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} rake{a} readline-common{a} ruby{a} ruby-cassiopee{a} ruby-did-you-mean{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-test-unit{a} ruby-text{a} ruby-xmlrpc{a} ruby2.5{a} rubygems-integration{a} sensible-utils{a} swi-prolog{a} swi-prolog-nox{a} swi-prolog-x{a} t1utils{a} tex-common{a} texlive{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus fonts-dejavu-extra fonts-droid-fallback fonts-lato javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libcupsfilters1 libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libstringtemplate-java libx11-protocol-perl libxt-dev lmodern lynx shared-mime-info tex-gyre tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs zip 0 packages upgraded, 242 newly installed, 0 to remove and 0 not upgraded. Need to get 413 MB of archives. After unpacking 1070 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 23 http://deb.debian.org/debian buster/main armhf gawk armhf 1:4.2.1+dfsg-1 [622 kB] Get: 24 http://deb.debian.org/debian buster/main armhf poppler-data all 0.4.9-2 [1473 kB] Get: 25 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 26 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 27 http://deb.debian.org/debian buster/main armhf tex-common all 6.11 [53.1 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 30 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 31 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 32 http://deb.debian.org/debian buster/main armhf openssl armhf 1.1.1d-0+deb10u3 [818 kB] Get: 33 http://deb.debian.org/debian buster/main armhf ca-certificates all 20190110 [157 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libnspr4 armhf 2:4.20-1 [90.0 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libnss3 armhf 2:3.42.1-1+deb10u3 [970 kB] Get: 36 http://deb.debian.org/debian buster/main armhf ca-certificates-java all 20190405 [15.7 kB] Get: 37 http://deb.debian.org/debian buster/main armhf java-common all 0.71 [14.4 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libavahi-common-data armhf 0.7-4+b1 [122 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libavahi-common3 armhf 0.7-4+b1 [51.1 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libdbus-1-3 armhf 1.12.20-0+deb10u1 [191 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libavahi-client3 armhf 0.7-4+b1 [54.5 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 46 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libcups2 armhf 2.2.10-6+deb10u3 [291 kB] Get: 48 http://deb.debian.org/debian buster/main armhf liblcms2-2 armhf 2.9-3 [119 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [112 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u1 [322 kB] Get: 52 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 53 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 55 http://deb.debian.org/debian buster/main armhf libasound2-data all 1.1.8-1 [59.6 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libasound2 armhf 1.1.8-1 [310 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libpcsclite1 armhf 1.8.24-1 [55.4 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 59 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 60 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 61 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1 [298 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1 [698 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libxi6 armhf 2:1.7.9-1 [78.4 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 66 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 67 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB] Get: 68 http://deb.debian.org/debian buster/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB] Get: 69 http://deb.debian.org/debian buster/main armhf openjdk-11-jre-headless armhf 11.0.6+10-1~deb10u1 [33.2 MB] Get: 70 http://deb.debian.org/debian buster/main armhf default-jre-headless armhf 2:1.11-71 [10.9 kB] Get: 71 http://deb.debian.org/debian buster/main armhf ant all 1.10.5-2 [2082 kB] Get: 72 http://deb.debian.org/debian buster/main armhf ant-optional all 1.10.5-2 [379 kB] Get: 73 http://deb.debian.org/debian buster/main armhf libantlr3-runtime-java all 3.5.2-9 [166 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libstringtemplate4-java all 4.0.8-2 [232 kB] Get: 75 http://deb.debian.org/debian buster/main armhf antlr3 all 3.5.2-9 [1142 kB] Get: 76 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 77 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 78 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 79 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 80 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 82 http://deb.debian.org/debian buster/main armhf libboost-regex1.67.0 armhf 1.67.0-13+deb10u1 [438 kB] Get: 83 http://deb.debian.org/debian buster/main armhf libboost-serialization1.67.0 armhf 1.67.0-13+deb10u1 [303 kB] Get: 84 http://deb.debian.org/debian buster/main armhf libgflags2.2 armhf 2.2.2-1 [63.8 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libgoogle-glog0v5 armhf 0.3.5-1 [46.7 kB] Get: 86 http://deb.debian.org/debian buster/main armhf libcassie1v5 armhf 1.0.9-2 [34.9 kB] Get: 87 http://deb.debian.org/debian buster/main armhf cassiopee armhf 1.0.9-2 [16.1 kB] Get: 88 http://deb.debian.org/debian buster/main armhf chrpath armhf 0.16-2+b1 [15.9 kB] Get: 89 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 90 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 91 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 92 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 93 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 94 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 95 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 96 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 97 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 98 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 99 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 100 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 101 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 102 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 103 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 104 http://deb.debian.org/debian buster/main armhf libglvnd0 armhf 1.1.0-1 [49.1 kB] Get: 105 http://deb.debian.org/debian buster/main armhf libdrm-common all 2.4.97-1 [13.8 kB] Get: 106 http://deb.debian.org/debian buster/main armhf libdrm2 armhf 2.4.97-1 [35.7 kB] Get: 107 http://deb.debian.org/debian buster/main armhf libglapi-mesa armhf 18.3.6-2+deb10u1 [71.7 kB] Get: 108 http://deb.debian.org/debian buster/main armhf libx11-xcb1 armhf 2:1.6.7-1 [190 kB] Get: 109 http://deb.debian.org/debian buster/main armhf libxcb-dri2-0 armhf 1.13.1-2 [100 kB] Get: 110 http://deb.debian.org/debian buster/main armhf libxcb-dri3-0 armhf 1.13.1-2 [100.0 kB] Get: 111 http://deb.debian.org/debian buster/main armhf libxcb-glx0 armhf 1.13.1-2 [114 kB] Get: 112 http://deb.debian.org/debian buster/main armhf libxcb-present0 armhf 1.13.1-2 [99.0 kB] Get: 113 http://deb.debian.org/debian buster/main armhf libxcb-sync1 armhf 1.13.1-2 [102 kB] Get: 114 http://deb.debian.org/debian buster/main armhf libxfixes3 armhf 1:5.0.3-1 [20.6 kB] Get: 115 http://deb.debian.org/debian buster/main armhf libxdamage1 armhf 1:1.1.4-3+b3 [14.2 kB] Get: 116 http://deb.debian.org/debian buster/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 117 http://deb.debian.org/debian buster/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 118 http://deb.debian.org/debian buster/main armhf libdrm-amdgpu1 armhf 2.4.97-1 [25.8 kB] Get: 119 http://deb.debian.org/debian buster/main armhf libdrm-etnaviv1 armhf 2.4.97-1 [19.7 kB] Get: 120 http://deb.debian.org/debian buster/main armhf libdrm-nouveau2 armhf 2.4.97-1 [24.2 kB] Get: 121 http://deb.debian.org/debian buster/main armhf libdrm-radeon1 armhf 2.4.97-1 [28.7 kB] Get: 122 http://deb.debian.org/debian buster/main armhf libedit2 armhf 3.1-20181209-1 [79.5 kB] Get: 123 http://deb.debian.org/debian buster/main armhf libllvm7 armhf 1:7.0.1-8 [11.3 MB] Get: 124 http://deb.debian.org/debian buster/main armhf libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 125 http://deb.debian.org/debian buster/main armhf libsensors5 armhf 1:3.5.0-3 [49.7 kB] Get: 126 http://deb.debian.org/debian buster/main armhf libgl1-mesa-dri armhf 18.3.6-2+deb10u1 [4103 kB] Get: 127 http://deb.debian.org/debian buster/main armhf libglx-mesa0 armhf 18.3.6-2+deb10u1 [162 kB] Get: 128 http://deb.debian.org/debian buster/main armhf libglx0 armhf 1.1.0-1 [25.5 kB] Get: 129 http://deb.debian.org/debian buster/main armhf libgl1 armhf 1.1.0-1 [105 kB] Get: 130 http://deb.debian.org/debian buster/main armhf libgif7 armhf 5.1.4-3 [40.8 kB] Get: 131 http://deb.debian.org/debian buster/main armhf openjdk-11-jre armhf 11.0.6+10-1~deb10u1 [30.9 kB] Get: 132 http://deb.debian.org/debian buster/main armhf default-jre armhf 2:1.11-71 [1044 B] Get: 133 http://deb.debian.org/debian buster/main armhf openjdk-11-jdk-headless armhf 11.0.6+10-1~deb10u1 [183 MB] Get: 134 http://deb.debian.org/debian buster/main armhf default-jdk-headless armhf 2:1.11-71 [1104 B] Get: 135 http://deb.debian.org/debian buster/main armhf openjdk-11-jdk armhf 11.0.6+10-1~deb10u1 [2236 kB] Get: 136 http://deb.debian.org/debian buster/main armhf default-jdk armhf 2:1.11-71 [1056 B] Get: 137 http://deb.debian.org/debian buster/main armhf fonts-lmodern all 2.004.5-6 [4539 kB] Get: 138 http://deb.debian.org/debian buster/main armhf libhamcrest-java all 1.3-9 [388 kB] Get: 139 http://deb.debian.org/debian buster/main armhf junit4 all 4.12-8 [292 kB] Get: 140 http://deb.debian.org/debian buster/main armhf libactivation-java all 1.2.0-2 [84.7 kB] Get: 141 http://deb.debian.org/debian buster/main armhf libapache-pom-java all 18-1 [4676 B] Get: 142 http://deb.debian.org/debian buster/main armhf libarchive13 armhf 3.3.3-4+deb10u1 [277 kB] Get: 143 http://deb.debian.org/debian buster/main armhf libcommons-pool-java all 1.6-3 [104 kB] Get: 144 http://deb.debian.org/debian buster/main armhf libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 145 http://deb.debian.org/debian buster/main armhf libcommons-dbcp-java all 1.4-6 [157 kB] Get: 146 http://deb.debian.org/debian buster/main armhf libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 147 http://deb.debian.org/debian buster/main armhf libjsp-api-java all 2.3.4-2+deb10u1 [53.7 kB] Get: 148 http://deb.debian.org/debian buster/main armhf libel-api-java all 3.0.0-2+deb10u1 [64.9 kB] Get: 149 http://deb.debian.org/debian buster/main armhf libwebsocket-api-java all 1.1-1+deb10u1 [40.0 kB] Get: 150 http://deb.debian.org/debian buster/main armhf libservlet3.1-java all 1:4.0.1-2 [9516 B] Get: 151 http://deb.debian.org/debian buster/main armhf libhsqldb-java all 2.4.1-2 [1633 kB] Get: 152 http://deb.debian.org/debian buster/main armhf libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get: 153 http://deb.debian.org/debian buster/main armhf libbiojava1.7-java all 1:1.7.1-8 [3274 kB] Get: 154 http://deb.debian.org/debian buster/main armhf libbiojava-java all 1:1.7.1-8 [48.5 kB] Get: 155 http://deb.debian.org/debian buster/main armhf libbrotli1 armhf 1.0.7-2 [259 kB] Get: 156 http://deb.debian.org/debian buster/main armhf libbsd-dev armhf 0.9.1-2 [222 kB] Get: 157 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 158 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 159 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 160 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4 [616 kB] Get: 161 http://deb.debian.org/debian buster/main armhf libcommons-cli-java all 1.4-1 [55.2 kB] Get: 162 http://deb.debian.org/debian buster/main armhf libcommons-parent-java all 43-1 [10.8 kB] Get: 163 http://deb.debian.org/debian buster/main armhf libcommons-lang-java all 2.6-8 [273 kB] Get: 164 http://deb.debian.org/debian buster/main armhf libcommons-logging-java all 1.2-2 [62.2 kB] Get: 165 http://deb.debian.org/debian buster/main armhf libcommons-configuration-java all 1.10-5 [330 kB] Get: 166 http://deb.debian.org/debian buster/main armhf libcupsimage2 armhf 2.2.10-6+deb10u3 [130 kB] Get: 167 http://deb.debian.org/debian buster/main armhf libncurses-dev armhf 6.1+20181013-2+deb10u2 [295 kB] Get: 168 http://deb.debian.org/debian buster/main armhf libedit-dev armhf 3.1-20181209-1 [101 kB] Get: 169 http://deb.debian.org/debian buster/main armhf libgmpxx4ldbl armhf 2:6.1.2+dfsg-4 [21.7 kB] Get: 170 http://deb.debian.org/debian buster/main armhf libgmp-dev armhf 2:6.1.2+dfsg-4 [581 kB] Get: 171 http://deb.debian.org/debian buster/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB] Get: 172 http://deb.debian.org/debian buster/main armhf libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 173 http://deb.debian.org/debian buster/main armhf libidn11 armhf 1.33-2.2 [113 kB] Get: 174 http://deb.debian.org/debian buster/main armhf libijs-0.35 armhf 0.35-14 [16.7 kB] Get: 175 http://deb.debian.org/debian buster/main armhf libjbig2dec0 armhf 0.16-1 [54.5 kB] Get: 176 http://deb.debian.org/debian buster/main armhf libopenjp2-7 armhf 2.3.0-2+deb10u1 [143 kB] Get: 177 http://deb.debian.org/debian buster/main armhf libpaper1 armhf 1.1.28 [20.5 kB] Get: 178 http://deb.debian.org/debian buster/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 179 http://deb.debian.org/debian buster/main armhf libwebp6 armhf 0.6.1-2 [229 kB] Get: 180 http://deb.debian.org/debian buster/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u1 [252 kB] Get: 181 http://deb.debian.org/debian buster/main armhf libgs9 armhf 9.27~dfsg-2+deb10u3 [1900 kB] Get: 182 http://deb.debian.org/debian buster/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB] Get: 183 http://deb.debian.org/debian buster/main armhf libharfbuzz-icu0 armhf 2.3.1-1 [833 kB] Get: 184 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get: 185 http://deb.debian.org/debian buster/main armhf libjaxp1.3-java all 1.3.05-5 [226 kB] Get: 186 http://deb.debian.org/debian buster/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 187 http://deb.debian.org/debian buster/main armhf libkpathsea6 armhf 2018.20181218.49446-1 [157 kB] Get: 188 http://deb.debian.org/debian buster/main armhf liblog4j1.2-java all 1.2.17-8+deb10u1 [438 kB] Get: 189 http://deb.debian.org/debian buster/main armhf libmail-java all 1.6.2-1 [696 kB] Get: 190 http://deb.debian.org/debian buster/main armhf libossp-uuid16 armhf 1.6.2-1.5+b7 [35.3 kB] Get: 191 http://deb.debian.org/debian buster/main armhf libpaper-utils armhf 1.1.28 [17.6 kB] Get: 192 http://deb.debian.org/debian buster/main armhf libpotrace0 armhf 1.15-1 [23.9 kB] Get: 193 http://deb.debian.org/debian buster/main armhf libptexenc1 armhf 2018.20181218.49446-1 [58.1 kB] Get: 194 http://deb.debian.org/debian buster/main armhf libreadline-dev armhf 7.0-5 [121 kB] Get: 195 http://deb.debian.org/debian buster/main armhf rubygems-integration all 1.11+deb10u1 [5212 B] Get: 196 http://deb.debian.org/debian buster/main armhf ruby2.5 armhf 2.5.5-3+deb10u2 [400 kB] Get: 197 http://deb.debian.org/debian buster/main armhf ruby armhf 1:2.5.1 [11.3 kB] Get: 198 http://deb.debian.org/debian buster/main armhf rake all 12.3.1-3+deb10u1 [67.1 kB] Get: 199 http://deb.debian.org/debian buster/main armhf ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get: 200 http://deb.debian.org/debian buster/main armhf ruby-minitest all 5.11.3-1 [54.8 kB] Get: 201 http://deb.debian.org/debian buster/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB] Get: 202 http://deb.debian.org/debian buster/main armhf ruby-power-assert all 1.1.1-1 [10.9 kB] Get: 203 http://deb.debian.org/debian buster/main armhf ruby-test-unit all 3.2.8-1 [72.4 kB] Get: 204 http://deb.debian.org/debian buster/main armhf ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get: 205 http://deb.debian.org/debian buster/main armhf libyaml-0-2 armhf 0.2.1-1 [40.6 kB] Get: 206 http://deb.debian.org/debian buster/main armhf libruby2.5 armhf 2.5.5-3+deb10u2 [3194 kB] Get: 207 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 208 http://deb.debian.org/debian buster/main armhf libsynctex2 armhf 2018.20181218.49446-1 [67.4 kB] Get: 209 http://deb.debian.org/debian buster/main armhf libteckit0 armhf 2.5.8+ds2-5 [246 kB] Get: 210 http://deb.debian.org/debian buster/main armhf libtexlua52 armhf 2018.20181218.49446-1 [86.7 kB] Get: 211 http://deb.debian.org/debian buster/main armhf libtexlua53 armhf 2018.20181218.49446-1 [97.8 kB] Get: 212 http://deb.debian.org/debian buster/main armhf libtexluajit2 armhf 2018.20181218.49446-1 [201 kB] Get: 213 http://deb.debian.org/debian buster/main armhf libwoff1 armhf 1.0.2-1 [35.8 kB] Get: 214 http://deb.debian.org/debian buster/main armhf libxml-commons-external-java all 1.4.01-3 [240 kB] Get: 215 http://deb.debian.org/debian buster/main armhf libxml-commons-resolver1.1-java all 1.2-9 [91.6 kB] Get: 216 http://deb.debian.org/debian buster/main armhf libxerces2-java all 2.12.0-1 [1440 kB] Get: 217 http://deb.debian.org/debian buster/main armhf libxalan2-java all 2.7.2-2 [3380 kB] Get: 218 http://deb.debian.org/debian buster/main armhf libxt6 armhf 1:1.1.5-1+b3 [159 kB] Get: 219 http://deb.debian.org/debian buster/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 220 http://deb.debian.org/debian buster/main armhf libxpm4 armhf 1:3.5.12-1 [44.0 kB] Get: 221 http://deb.debian.org/debian buster/main armhf libxaw7 armhf 2:1.0.13-1+b2 [167 kB] Get: 222 http://deb.debian.org/debian buster/main armhf libxft2 armhf 2.3.2-2 [50.1 kB] Get: 223 http://deb.debian.org/debian buster/main armhf libxinerama1 armhf 2:1.1.4-2 [17.3 kB] Get: 224 http://deb.debian.org/debian buster/main armhf libxxhash0 armhf 0.6.5-2 [10.2 kB] Get: 225 http://deb.debian.org/debian buster/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB] Get: 226 http://deb.debian.org/debian buster/main armhf preview-latex-style all 11.91-2 [201 kB] Get: 227 http://deb.debian.org/debian buster/main armhf ruby-text all 1.3.0-1 [13.0 kB] Get: 228 http://deb.debian.org/debian buster/main armhf ruby-cassiopee all 0.1.13-1 [11.5 kB] Get: 229 http://deb.debian.org/debian buster/main armhf swi-prolog-nox armhf 8.0.2+dfsg-3+deb10u1 [3559 kB] Get: 230 http://deb.debian.org/debian buster/main armhf swi-prolog-x armhf 8.0.2+dfsg-3+deb10u1 [1956 kB] Get: 231 http://deb.debian.org/debian buster/main armhf swi-prolog armhf 8.0.2+dfsg-3+deb10u1 [24.4 kB] Get: 232 http://deb.debian.org/debian buster/main armhf t1utils armhf 1.41-3 [54.4 kB] Get: 233 http://deb.debian.org/debian buster/main armhf texlive-binaries armhf 2018.20181218.49446-1 [8656 kB] Get: 234 http://deb.debian.org/debian buster/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 235 http://deb.debian.org/debian buster/main armhf texlive-base all 2018.20190227-2 [19.7 MB] Get: 236 http://deb.debian.org/debian buster/main armhf texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 237 http://deb.debian.org/debian buster/main armhf texlive-latex-base all 2018.20190227-2 [984 kB] Get: 238 http://deb.debian.org/debian buster/main armhf texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 239 http://deb.debian.org/debian buster/main armhf texlive all 2018.20190227-2 [32.6 kB] Get: 240 http://deb.debian.org/debian buster/main armhf texlive-pictures all 2018.20190227-2 [8201 kB] Get: 241 http://deb.debian.org/debian buster/main armhf texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get: 242 http://deb.debian.org/debian buster/main armhf texlive-plain-generic all 2018.20190227-2 [24.3 MB] Fetched 413 MB in 49s (8445 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:armhf. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. 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Preparing to unpack .../14-libreadline7_7.0-5_armhf.deb ... Unpacking libreadline7:armhf (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:armhf. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:armhf. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython2-stdlib:armhf (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:armhf. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython-stdlib:armhf (2.7.16-1) ... Setting up libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20430 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_armhf.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Setting up readline-common (7.0-5) ... Setting up libreadline7:armhf (7.0-5) ... Setting up libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package gawk. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20453 files and directories currently installed.) Preparing to unpack .../000-gawk_1%3a4.2.1+dfsg-1_armhf.deb ... Unpacking gawk (1:4.2.1+dfsg-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../001-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../004-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../006-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package openssl. Preparing to unpack .../009-openssl_1.1.1d-0+deb10u3_armhf.deb ... Unpacking openssl (1.1.1d-0+deb10u3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../010-ca-certificates_20190110_all.deb ... Unpacking ca-certificates (20190110) ... Selecting previously unselected package libnspr4:armhf. Preparing to unpack .../011-libnspr4_2%3a4.20-1_armhf.deb ... Unpacking libnspr4:armhf (2:4.20-1) ... Selecting previously unselected package libnss3:armhf. Preparing to unpack .../012-libnss3_2%3a3.42.1-1+deb10u3_armhf.deb ... Unpacking libnss3:armhf (2:3.42.1-1+deb10u3) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../013-ca-certificates-java_20190405_all.deb ... Unpacking ca-certificates-java (20190405) ... Selecting previously unselected package java-common. Preparing to unpack .../014-java-common_0.71_all.deb ... Unpacking java-common (0.71) ... Selecting previously unselected package libavahi-common-data:armhf. Preparing to unpack .../015-libavahi-common-data_0.7-4+b1_armhf.deb ... Unpacking libavahi-common-data:armhf (0.7-4+b1) ... Selecting previously unselected package libavahi-common3:armhf. Preparing to unpack .../016-libavahi-common3_0.7-4+b1_armhf.deb ... Unpacking libavahi-common3:armhf (0.7-4+b1) ... Selecting previously unselected package libdbus-1-3:armhf. Preparing to unpack .../017-libdbus-1-3_1.12.20-0+deb10u1_armhf.deb ... Unpacking libdbus-1-3:armhf (1.12.20-0+deb10u1) ... Selecting previously unselected package libavahi-client3:armhf. Preparing to unpack .../018-libavahi-client3_0.7-4+b1_armhf.deb ... Unpacking libavahi-client3:armhf (0.7-4+b1) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../019-libkeyutils1_1.6-6_armhf.deb ... Unpacking libkeyutils1:armhf (1.6-6) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../020-libkrb5support0_1.17-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.17-3) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../021-libk5crypto3_1.17-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.17-3) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../022-libkrb5-3_1.17-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.17-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. Preparing to unpack .../023-libgssapi-krb5-2_1.17-3_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.17-3) ... Selecting previously unselected package libcups2:armhf. Preparing to unpack .../024-libcups2_2.2.10-6+deb10u3_armhf.deb ... Unpacking libcups2:armhf (2.2.10-6+deb10u3) ... Selecting previously unselected package liblcms2-2:armhf. Preparing to unpack .../025-liblcms2-2_2.9-3_armhf.deb ... Unpacking liblcms2-2:armhf (2.9-3) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../026-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ... Selecting previously unselected package libpng16-16:armhf. Preparing to unpack .../027-libpng16-16_1.6.36-6_armhf.deb ... Unpacking libpng16-16:armhf (1.6.36-6) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../028-libfreetype6_2.9.1-3+deb10u1_armhf.deb ... Unpacking libfreetype6:armhf (2.9.1-3+deb10u1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../029-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../030-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../031-libfontconfig1_2.13.1-2_armhf.deb ... Unpacking libfontconfig1:armhf (2.13.1-2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../032-libasound2-data_1.1.8-1_all.deb ... Unpacking libasound2-data (1.1.8-1) ... Selecting previously unselected package libasound2:armhf. Preparing to unpack .../033-libasound2_1.1.8-1_armhf.deb ... Unpacking libasound2:armhf (1.1.8-1) ... Selecting previously unselected package libpcsclite1:armhf. Preparing to unpack .../034-libpcsclite1_1.8.24-1_armhf.deb ... Unpacking libpcsclite1:armhf (1.8.24-1) ... Selecting previously unselected package libxau6:armhf. Preparing to unpack .../035-libxau6_1%3a1.0.8-1+b2_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1+b2) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../036-libxdmcp6_1%3a1.1.2-3_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-3) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../037-libxcb1_1.13.1-2_armhf.deb ... Unpacking libxcb1:armhf (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../038-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../039-libx11-6_2%3a1.6.7-1_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.7-1) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../040-libxext6_2%3a1.3.3-1+b2_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1+b2) ... Selecting previously unselected package libxi6:armhf. Preparing to unpack .../041-libxi6_2%3a1.7.9-1_armhf.deb ... Unpacking libxi6:armhf (2:1.7.9-1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../042-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package lsb-base. Preparing to unpack .../043-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package x11-common. Preparing to unpack .../044-x11-common_1%3a7.7+19_all.deb ... Unpacking x11-common (1:7.7+19) ... Selecting previously unselected package libxtst6:armhf. Preparing to unpack .../045-libxtst6_2%3a1.2.3-1_armhf.deb ... Unpacking libxtst6:armhf (2:1.2.3-1) ... Selecting previously unselected package openjdk-11-jre-headless:armhf. Preparing to unpack .../046-openjdk-11-jre-headless_11.0.6+10-1~deb10u1_armhf.deb ... Unpacking openjdk-11-jre-headless:armhf (11.0.6+10-1~deb10u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../047-default-jre-headless_2%3a1.11-71_armhf.deb ... Unpacking default-jre-headless (2:1.11-71) ... Selecting previously unselected package ant. Preparing to unpack .../048-ant_1.10.5-2_all.deb ... Unpacking ant (1.10.5-2) ... Selecting previously unselected package ant-optional. Preparing to unpack .../049-ant-optional_1.10.5-2_all.deb ... Unpacking ant-optional (1.10.5-2) ... Selecting previously unselected package libantlr3-runtime-java. Preparing to unpack .../050-libantlr3-runtime-java_3.5.2-9_all.deb ... Unpacking libantlr3-runtime-java (3.5.2-9) ... Selecting previously unselected package libstringtemplate4-java. Preparing to unpack .../051-libstringtemplate4-java_4.0.8-2_all.deb ... Unpacking libstringtemplate4-java (4.0.8-2) ... Selecting previously unselected package antlr3. Preparing to unpack .../052-antlr3_3.5.2-9_all.deb ... Unpacking antlr3 (3.5.2-9) ... Selecting previously unselected package m4. Preparing to unpack .../053-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../054-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../055-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Setting up libijs-0.35:armhf (0.35-14) ... Setting up libtexluajit2:armhf (2018.20181218.49446-1) ... Setting up libbrotli1:armhf (1.0.7-2) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up liblog4j1.2-java (1.2.17-8+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up m4 (1.4.18-2) ... Setting up libel-api-java (3.0.0-2+deb10u1) ... Setting up libzzip-0-13:armhf (0.13.62-3.2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libossp-uuid16:armhf (1.6.2-1.5+b7) ... Setting up libjbig0:armhf (2.1-3.1+b2) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up poppler-data (0.4.9-2) ... Setting up libkrb5support0:armhf (1.17-3) ... 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Setting up libgflags2.2 (2.2.2-1) ... Setting up libpotrace0:armhf (1.15-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libcommons-dbcp-java (1.4-6) ... Setting up libice6:armhf (2:1.0.9-2) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libncurses-dev:armhf (6.1+20181013-2+deb10u2) ... Setting up libxcb1:armhf (1.13.1-2) ... Setting up libboost-regex1.67.0:armhf (1.67.0-13+deb10u1) ... Setting up libgmp-dev:armhf (2:6.1.2+dfsg-4) ... Setting up libstringtemplate4-java (4.0.8-2) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libwoff1:armhf (1.0.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libpython2-stdlib:armhf (2.7.16-1) ... Setting up libhsqldb-java (2.4.1-2) ... Setting up libarchive13:armhf (3.3.3-4+deb10u1) ... Setting up libxcb-render0:armhf (1.13.1-2) ... Setting up libxcb-glx0:armhf (1.13.1-2) ... Setting up libedit2:armhf (3.1-20181209-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:armhf (0.7-4+b1) ... Setting up libcommons-logging-java (1.2-2) ... Setting up libnss3:armhf (2:3.42.1-1+deb10u3) ... Setting up libxcb-shm0:armhf (1.13.1-2) ... Setting up libreadline-dev:armhf (7.0-5) ... Setting up libcommons-lang-java (2.6-8) ... Setting up python2 (2.7.16-1) ... Setting up libxcb-present0:armhf (1.13.1-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libpython-stdlib:armhf (2.7.16-1) ... Setting up libptexenc1:armhf (2018.20181218.49446-1) ... Setting up libfreetype6:armhf (2.9.1-3+deb10u1) ... Setting up libxcb-sync1:armhf (1.13.1-2) ... Setting up libxalan2-java (2.7.2-2) ... Setting up libedit-dev:armhf (3.1-20181209-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:armhf (1.17-3) ... Setting up libcroco3:armhf (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up libxcb-dri2-0:armhf (1.13.1-2) ... Setting up libdrm2:armhf (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up swi-prolog-nox (8.0.2+dfsg-3+deb10u1) ... update-alternatives: using /usr/bin/swipl to provide /usr/bin/prolog (prolog) in auto mode Setting up libllvm7:armhf (1:7.0.1-8) ... Setting up libx11-6:armhf (2:1.6.7-1) ... Setting up libharfbuzz0b:armhf (2.3.1-1) ... Setting up libcommons-configuration-java (1.10-5) ... Setting up libsm6:armhf (2:1.2.3-1) ... Setting up python (2.7.16-1) ... Setting up libgoogle-glog0v5 (0.3.5-1) ... Setting up libavahi-client3:armhf (0.7-4+b1) ... Setting up libdrm-amdgpu1:armhf (2.4.97-1) ... Setting up libxcb-dri3-0:armhf (1.13.1-2) ... Setting up libpaper1:armhf (1.1.28) ... Creating config file /etc/papersize with new version Setting up libdrm-nouveau2:armhf (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:armhf (2.3.1-1) ... Setting up libdrm-etnaviv1:armhf (2.4.97-1) ... Setting up libxpm4:armhf (1:3.5.12-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libcassie1v5 (1.0.9-2) ... Setting up libdrm-radeon1:armhf (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libgl1-mesa-dri:armhf (18.3.6-2+deb10u1) ... Setting up cassiopee (1.0.9-2) ... Setting up libxext6:armhf (2:1.3.3-1+b2) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxfixes3:armhf (1:5.0.3-1) ... Setting up libxinerama1:armhf (2:1.1.4-2) ... Setting up libxt6:armhf (1:1.1.5-1+b3) ... Setting up libcups2:armhf (2.2.10-6+deb10u3) ... Setting up libfontconfig1:armhf (2.13.1-2) ... Setting up libxft2:armhf (2.3.2-2) ... Setting up libxmu6:armhf (2:1.1.2-2+b3) ... Setting up libxdamage1:armhf (1:1.1.4-3+b3) ... Setting up libxi6:armhf (2:1.7.9-1) ... Setting up libxtst6:armhf (2:1.2.3-1) ... Setting up po-debconf (1.0.21) ... Setting up preview-latex-style (11.91-2) ... Setting up libxaw7:armhf (2:1.0.13-1+b2) ... Setting up libcairo2:armhf (1.16.0-4) ... Setting up libcupsimage2:armhf (2.2.10-6+deb10u3) ... Setting up swi-prolog-x (8.0.2+dfsg-3+deb10u1) ... Setting up libglx-mesa0:armhf (18.3.6-2+deb10u1) ... Setting up libgs9:armhf (9.27~dfsg-2+deb10u3) ... Setting up libglx0:armhf (1.1.0-1) ... Setting up libgl1:armhf (1.1.0-1) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up swi-prolog (8.0.2+dfsg-3+deb10u1) ... Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up texlive-plain-generic (2018.20190227-2) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up texlive-pictures (2018.20190227-2) ... Setting up texlive-fonts-recommended (2018.20190227-2) ... Setting up texlive (2018.20190227-2) ... Setting up texlive-latex-extra (2018.20190227-2) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up default-jre-headless (2:1.11-71) ... Setting up libruby2.5:armhf (2.5.5-3+deb10u2) ... Setting up openjdk-11-jre-headless:armhf (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up debhelper (12.1.1) ... Setting up openjdk-11-jre:armhf (11.0.6+10-1~deb10u1) ... Setting up openjdk-11-jdk-headless:armhf (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up dh-autoreconf (19) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up antlr3 (3.5.2-9) ... Setting up ant (1.10.5-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up openjdk-11-jdk:armhf (11.0.6+10-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:AffirmTrust_Networking.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:ACCVRAIZ1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:TrustCor_ECA-1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:EC-ACC.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:AffirmTrust_Premium.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Secure_Global_CA.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:AddTrust_External_Root.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Taiwan_GRCA.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:Certigna.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Izenpe.com.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:DigiCert_Global_Root_CA.pem done. Setting up libbytecode-java (0.92.svn.20090106-2) ... Setting up junit4 (4.12-8) ... Setting up ruby2.5 (2.5.5-3+deb10u2) ... Setting up default-jdk (2:1.11-71) ... Setting up ant-optional (1.10.5-2) ... Setting up ruby (1:2.5.1) ... Setting up libbiojava1.7-java (1:1.7.1-8) ... Setting up ruby-text (1.3.0-1) ... Setting up libbiojava-java (1:1.7.1-8) ... Setting up ruby-cassiopee (0.1.13-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/logol-1.7.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package logol dpkg-buildpackage: info: source version 1.7.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/logol-1.7.9' if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi if [ -e prolog/process.so ]; then rm -f prolog/process.so; fi dh_auto_clean ant clean Buildfile: /build/logol-1.7.9/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. clean: BUILD SUCCESSFUL Total time: 6 seconds make[1]: Leaving directory '/build/logol-1.7.9' debian/rules override_dh_clean make[1]: Entering directory '/build/logol-1.7.9' if [ -e tools/pldoc.sty.upstream ]; then mv tools/pldoc.sty.upstream tools/pldoc.sty; fi if [ ! -e test/tmp ]; then mkdir -p test/tmp; fi if [ ! -e test/results ]; then mkdir -p test/results; fi dh_clean rm -f Swi*.xml rm -f prolog/*.exe rm -f lib/*.jar rm -f *.log rm -f src/org/irisa/genouest/logol/parser/* rm -f tools/suffixSearch.sh rm -rf test/tmp rm -rf test/results make[1]: Leaving directory '/build/logol-1.7.9' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/logol-1.7.9' if [ ! -e lib ]; then mkdir -p lib; fi if [ ! -e prolog/process.so ]; then ln -s /usr/lib/swi-prolog/lib/arm-linux/process.so prolog/process.so; fi mv tools/pldoc.sty tools/pldoc.sty.upstream dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 ant -Duser.name debian -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 Buildfile: /build/logol-1.7.9/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. updatemod: setup: compile_swi_exe: [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="armv8l-linux" [exec] PLSOEXT="so" [exec] PLLIBDIR="/usr/lib/swi-prolog/lib/armv8l-linux" [exec] PLLIB="-lswipl" [exec] PLTHREADS="yes" [exec] logolSwiMain.c: In function 'main': [exec] logolSwiMain.c:50:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(ResultFile,argv[2]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:52:4: warning: ignoring return value of 'PL_next_solution', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:58:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(File,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:62:4: warning: ignoring return value of 'PL_put_integer', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_integer(HeaderSize, header); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:67:4: warning: ignoring return value of 'PL_next_solution', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:76:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile,argv[6]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:78:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(InFile,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:80:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(OutFile,argv[2]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:82:4: warning: ignoring return value of 'PL_put_integer', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_integer(Offset,offset); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:102:4: warning: ignoring return value of 'PL_next_solution', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:120:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(ResultFile,argv[2]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] logolSwiMain.c:122:4: warning: ignoring return value of 'PL_next_solution', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_next_solution(query); [exec] ^~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /build/logol-1.7.9/prolog/sicstus.pl:495: [exec] Singleton variables: [Before,Length,CountPos,CountLength] [exec] ERROR: /build/logol-1.7.9/prolog/logol.pl:7: [exec] catch/3: Undefined procedure: module/3 [exec] However, there are definitions for: [exec] module/1 [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:7: [exec] Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:206: [exec] Singleton variables: [Max] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:221: [exec] Singleton variables: [Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:304: [exec] Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:304: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:394: [exec] Singleton variables: [SequenceLength] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:408: [exec] Singleton variables: [Unique,Out,Exit] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:434: [exec] Singleton variables: [SequenceLength] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:472: [exec] Singleton variables: [NewPos] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:472: [exec] Singleton variable in branch: NewPos [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:514: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:517: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:556: [exec] Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:575: [exec] Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:590: [exec] Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:590: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: IntermediateSpacer [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:673: [exec] Singleton variables: [InputLength] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:679: [exec] Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:724: [exec] Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:964: [exec] Singleton variables: [Exit] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:993: [exec] Singleton variables: [Word] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1024: [exec] Singleton variables: [N,Min,Max,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1068: [exec] Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1162: [exec] Singleton variables: [Errors] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1266: [exec] Singleton variables: [Morph,Reverse] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1270: [exec] Singleton variables: [Morph] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1281: [exec] Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1317: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1341: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1645: [exec] Singleton variables: [Name] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2036: [exec] Singleton variables: [Matrix] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2077: [exec] Singleton variables: [Type] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2180: [exec] Singleton variables: [Exit] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2335: [exec] Singleton variables: [FilterPredicate] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2350: [exec] Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2380: [exec] Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2395: [exec] Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2435: [exec] Singleton variables: [Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2435: [exec] Singleton variable in branch: Max [exec] Singleton variable in branch: Z [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2470: [exec] Singleton variables: [VarId] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2498: [exec] Singleton variables: [X,Y,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2516: [exec] Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2534: [exec] Singleton variables: [ALPHABET] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2576: [exec] Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2604: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2608: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2624: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2644: [exec] Singleton variables: [ID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2647: [exec] Singleton variables: [OPTVAR] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2653: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2701: [exec] Singleton variables: [DATA] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2752: [exec] Singleton variables: [MATCH] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2755: [exec] Singleton variables: [MATCH] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2758: [exec] Singleton variables: [MATCH] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2761: [exec] Singleton variables: [MATCH,ALPHABET] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2766: [exec] Singleton variables: [VAR,VARFOUND] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2769: [exec] Singleton variables: [VAR,VARFOUND] [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o logolSwiMain.o logolSwiMain.c [exec] /usr/bin/cc -o logol.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/armv8l-linux logolSwiMain.o -L/usr/lib/swi-prolog/lib/armv8l-linux -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-25877',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-25877 >> logol.exe [exec] chmod 755 logol.exe [exec] rm logolSwiMain.o [exec] rm pltmp-25877 [exec] PLBASE="/usr/lib/swi-prolog" [exec] PLARCH="armv8l-linux" [exec] PLSOEXT="so" [exec] PLLIBDIR="/usr/lib/swi-prolog/lib/armv8l-linux" [exec] PLLIB="-lswipl" [exec] PLTHREADS="yes" [exec] preSwiMain.c: In function 'main': [exec] preSwiMain.c:40:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile1,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:42:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile2,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:44:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile3,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] preSwiMain.c:46:4: warning: ignoring return value of 'PL_put_string_chars', declared with attribute warn_unused_result [-Wunused-result] [exec] PL_put_string_chars(LogolFile4,argv[1]); [exec] ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [exec] Warning: /build/logol-1.7.9/prolog/sicstus.pl:495: [exec] Singleton variables: [Before,Length,CountPos,CountLength] [exec] ERROR: /build/logol-1.7.9/prolog/logol.pl:7: [exec] catch/3: Undefined procedure: module/3 [exec] However, there are definitions for: [exec] module/1 [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:7: [exec] Goal (directive) failed: user:module(logol,[writeFinalMatches/0,isMin/5,replaceMatch/4,appendMatch/3,getCounter/1,config/1,optimalmatch/5,matchstore/2,isMax/3,parseResults/2,checkAlphabetPercentage/3,mapListExact/2,mapListGlobal/2,mapListLocal/2,mapListLocal0/2,matchExist/2,mapModels/3,notpred_pos/6,between/3,notexact_pos/6,notexact/3,matchExist/1,mapModels/2,mapList/2,mydb/1,matchlist/2,isexactwithgaponly/5,isexactwithgaponly_pos/5,setParent/2,getParent/2,logData/2,logolMain/5,cut_sequence/3,isequal/2,isexact_pos/4,isexactwithgapanderror_pos/5,isexactwitherroronly_pos/5,spacer_withresult_pos/5,wordSize_pos/4,wordContent_pos/4,checkPosition_pos/4,anySpacer_pos/7,repeatPredicate_pos/14,testOverlap_pos/5,getsuffixmatch_pos/12,getWordContent/4,openSequenceStream/2,closeSequenceStream/0,getCharsFromPosition/3,getNChar/3,resetParamList/3,getKnownVariables/2,getPosition/3,myCost/4,getDistance/3,initResultFile/1,closeResultFile/1,getParentVariable/2,is4me/5,outputfile/1,writeallresult/2,maxsize/1,getresult/2,offset/1,setSequence/2,computeCost/2,getsuffixmatch/12,writeSequence/2,sequenceData/3,suffixmatch/9,repeatPredicate/14,anySpacer/5,anySpacer/7,any/2,isoverlap/5,morphism/3,spacer_withresult/5,isexact/3,isexact/4,isexact/5,isexactwithgapanderror/4,isexactwithgapanderror/5,isexactwitherroronly/4,isexactwitherroronly/5,matrix/3,iscompequal/2,getcomplement/2,getreversecomplement/2,applymorphism/4,checkCost/4,cost/4,parentalCost/4,varDefinition/5,saveVariable/8,getVariable/9,removeVariable/1,wordSize/3,wordSize/4,percent/3,percent2int/3,checkCost/4,checkCost/5,checkPosition/3,checkPosition/5,checkRelativePosition/4,getContent/3,getContent/4,pushResult/2,countAlphabet/4,isexactwithdistinctgapanderror_pos/7,logolShell/1,cassiopee_pos/14,cassiopee/11],[]) [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:206: [exec] Singleton variables: [Max] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:221: [exec] Singleton variables: [Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:304: [exec] Singleton variables: [Tmp1,Tmp2,TmpOutput,Continue] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:304: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:394: [exec] Singleton variables: [SequenceLength] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:408: [exec] Singleton variables: [Unique,Out,Exit] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:434: [exec] Singleton variables: [SequenceLength] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:472: [exec] Singleton variables: [NewPos] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:472: [exec] Singleton variable in branch: NewPos [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:514: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:517: [exec] Singleton variables: [VARID,TYPE,REF,REFOTHER] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:556: [exec] Singleton variables: [Z,Pred,Spacer,Min,Max,CountSpacer,NumberSpacer] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:575: [exec] Singleton variables: [Z,Pred,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:590: [exec] Singleton variables: [Tmp1,Tmp2,IntermediateSpacer,TmpOutput,Continue] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:590: [exec] Singleton variable in branch: Tmp1 [exec] Singleton variable in branch: Tmp2 [exec] Singleton variable in branch: IntermediateSpacer [exec] Singleton variable in branch: TmpOutput [exec] Singleton variable in branch: Continue [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:673: [exec] Singleton variables: [InputLength] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:679: [exec] Singleton variables: [Pred,Z,PrevMatchLength,Count,OutCount] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:724: [exec] Singleton variables: [X,Y,E1,E2,N,Max,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:964: [exec] Singleton variables: [Exit] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:993: [exec] Singleton variables: [Word] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1024: [exec] Singleton variables: [N,Min,Max,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1068: [exec] Singleton variables: [E,Z,Spacer,CountSpacer,NumberSpacer] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1162: [exec] Singleton variables: [Errors] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1266: [exec] Singleton variables: [Morph,Reverse] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1270: [exec] Singleton variables: [Morph] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1281: [exec] Singleton variables: [Morph,Prev,CX,CZ] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1317: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1341: [exec] Singleton variables: [Matrix,MatrixAtom] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:1645: [exec] Singleton variables: [Name] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2036: [exec] Singleton variables: [Matrix] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2077: [exec] Singleton variables: [Type] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2180: [exec] Singleton variables: [Exit] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2335: [exec] Singleton variables: [FilterPredicate] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2350: [exec] Singleton variables: [Name,Content,Size,Level,Config] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2380: [exec] Singleton variables: [Name,Content,Size,Level,Errors,Config] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2395: [exec] Singleton variables: [Name,Content,Size,Info,Level,Errors,Config] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2435: [exec] Singleton variables: [Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2435: [exec] Singleton variable in branch: Max [exec] Singleton variable in branch: Z [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2470: [exec] Singleton variables: [VarId] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2498: [exec] Singleton variables: [X,Y,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2516: [exec] Singleton variables: [MinSpacer,MaxSpacer,X,Y,Z] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2534: [exec] Singleton variables: [ALPHABET] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2576: [exec] Singleton variables: [MATCH,A,B,NEWID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2604: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2608: [exec] Singleton variables: [OPTVAR,ID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2624: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2644: [exec] Singleton variables: [ID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2647: [exec] Singleton variables: [OPTVAR] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2653: [exec] Singleton variables: [OPTVAR,ID,NEWID] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2701: [exec] Singleton variables: [DATA] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2752: [exec] Singleton variables: [MATCH] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2755: [exec] Singleton variables: [MATCH] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2758: [exec] Singleton variables: [MATCH] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2761: [exec] Singleton variables: [MATCH,ALPHABET] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2766: [exec] Singleton variables: [VAR,VARFOUND] [exec] Warning: /build/logol-1.7.9/prolog/logol.pl:2769: [exec] Singleton variables: [VAR,VARFOUND] [exec] % halt [exec] eval `swipl --dump-runtime-variables` [exec] /usr/bin/cc -c -D_REENTRANT -D__SWI_PROLOG__ -D__SWI_EMBEDDED__ -I/usr/lib/swi-prolog/include -o preSwiMain.o preSwiMain.c [exec] /usr/bin/cc -o preanalyse.exe -Wl,-rpath=/usr/lib/swi-prolog/lib/armv8l-linux preSwiMain.o -L/usr/lib/swi-prolog/lib/armv8l-linux -lswipl [exec] swipl -f none -F none -g true -t "consult(['sicstus.pl','logol.pl']),qsave_program('pltmp-25924',[goal=true,toplevel=prolog,init_file='swi-logol.pl'])" [exec] cat pltmp-25924 >> preanalyse.exe [exec] chmod 755 preanalyse.exe [exec] rm preSwiMain.o [exec] rm pltmp-25924 clean: antlr: [java] /build/logol-1.7.9/src/logol.g [java] ANTLR Parser Generator Version 3.5.2 compile: [mkdir] Created dir: /build/logol-1.7.9/bin [javac] /build/logol-1.7.9/build.xml:91: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 62 source files to /build/logol-1.7.9/bin [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /build/logol-1.7.9/src/org/irisa/genouest/logol/test/GrammarTest.java:1995: warning: unreachable catch clause [javac] } catch (IOException e) { [javac] ^ [javac] thrown type FileNotFoundException has already been caught [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 2 warnings create-jar: [jar] Building jar: /build/logol-1.7.9/lib/LogolExec.jar test_swi: [mkdir] Created dir: /build/logol-1.7.9/test/tmp [mkdir] Created dir: /build/logol-1.7.9/test/results [exec] Warning: /build/logol-1.7.9/prolog/unitTest/swi-unit.pl:1: [exec] Singleton variables: [UnitPath,Lib] [exec] Warning: /build/logol-1.7.9/prolog/unitTest/swi-unit.pl:1: [exec] Goal (directive) failed: user:(prolog_flag(argv,[_3588,_3610,_3632,_3654,_3676,_3698,_3720,_3742,_3764,_3786]),ensure_loaded(_3698)) [exec] Warning: /build/logol-1.7.9/prolog/unitTest/swi-unit.pl:5: [exec] Singleton variables: [SicPath,Lib] [exec] Warning: /build/logol-1.7.9/prolog/unitTest/swi-unit.pl:5: [exec] Goal (directive) failed: user:(prolog_flag(argv,[_3588,_3610,_3632,_3654,_3676,_3698,_3720,_3742,_3764,_3786]),ensure_loaded(_3676)) [exec] Welcome to SWI-Prolog (threaded, 32 bits, version 8.0.2) [exec] SWI-Prolog comes with ABSOLUTELY NO WARRANTY. This is free software. [exec] Please run ?- license. for legal details. [exec] [exec] For online help and background, visit http://www.swi-prolog.org [exec] For built-in help, use ?- help(Topic). or ?- apropos(Word). [exec] [exec] [exec] % halt [junit] Running org.irisa.genouest.logol.test.GrammarTest [junit] Testsuite: org.irisa.genouest.logol.test.GrammarTest [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 155.983 sec [junit] Tests run: 78, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 155.983 sec [junit] [junit] ------------- Standard Output --------------- [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.logol.d60bb215-652d-4cb5-a378-62e8b1693b3a.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.logol.d60bb215-652d-4cb5-a378-62e8b1693b3a.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.logol.d60bb215-652d-4cb5-a378-62e8b1693b3a.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat_overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_overlap.logol.e591858c-7958-4619-bde0-b2ff00089735.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_overlap.logol.e591858c-7958-4619-bde0-b2ff00089735.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_overlap.logol.e591858c-7958-4619-bde0-b2ff00089735.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/partialcomplement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.Logol - option offset called with 1000 [junit] INFO org.irisa.genouest.logol.Logol - option start called with 5 [junit] INFO org.irisa.genouest.logol.Logol - option end called with 35 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.d8a143ec-fc35-4541-8bf1-582fe5f6eb73.1005-1035.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/partialcomplement.logol.d8a143ec-fc35-4541-8bf1-582fe5f6eb73.reverse.1005-1035.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/partialcomplement.logol.d8a143ec-fc35-4541-8bf1-582fe5f6eb73.5-35-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/partialcomplement.logol.d8a143ec-fc35-4541-8bf1-582fe5f6eb73.5-35-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/alphabet.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/alphabet.logol.926e38c7-051c-4098-9ecf-9e9e2c3cbdd8.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/alphabet.logol.926e38c7-051c-4098-9ecf-9e9e2c3cbdd8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/alphabet.logol.926e38c7-051c-4098-9ecf-9e9e2c3cbdd8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/optimal.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.logol.2fb3a91f-f6e8-447c-b57e-b5743abd830e.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.logol.2fb3a91f-f6e8-447c-b57e-b5743abd830e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.logol.2fb3a91f-f6e8-447c-b57e-b5743abd830e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat_startspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_startspacer.logol.9542daa2-e1b7-4d04-a4bc-7896bf418d60.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_startspacer.logol.9542daa2-e1b7-4d04-a4bc-7896bf418d60.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_startspacer.logol.9542daa2-e1b7-4d04-a4bc-7896bf418d60.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/overlap.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/overlap.logol.56594f22-6907-4b5b-81b2-55e9577ac0ad.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/overlap.logol.56594f22-6907-4b5b-81b2-55e9577ac0ad.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/overlap.logol.56594f22-6907-4b5b-81b2-55e9577ac0ad.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/end.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end.logol.7912d58d-473c-483b-8170-32ae04783953.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end.logol.7912d58d-473c-483b-8170-32ae04783953.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end.logol.7912d58d-473c-483b-8170-32ae04783953.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/negcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.logol.6c86a8d3-6101-4232-8ec9-e8ea1b802c80.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.logol.6c86a8d3-6101-4232-8ec9-e8ea1b802c80.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.logol.6c86a8d3-6101-4232-8ec9-e8ea1b802c80.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.logol.03343e96-241c-49f7-bfec-f3ac03f841a8.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.logol.03343e96-241c-49f7-bfec-f3ac03f841a8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.logol.03343e96-241c-49f7-bfec-f3ac03f841a8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/1799.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/1799.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1799.logol.745a33bc-6da7-403c-bcc5-2b74857a5437.1-4.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1799.logol.745a33bc-6da7-403c-bcc5-2b74857a5437.0-4-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1799.logol.745a33bc-6da7-403c-bcc5-2b74857a5437.0-4-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/1800.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/1800.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1800.logol.215e9f60-b1f3-4206-a2ed-229a80ce9080.1-19.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1800.logol.215e9f60-b1f3-4206-a2ed-229a80ce9080.0-19-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1800.logol.215e9f60-b1f3-4206-a2ed-229a80ce9080.0-19-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/1806.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/1806.logol.4b3f135d-5676-4b81-a622-c450a43375a1.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/1806.logol.4b3f135d-5676-4b81-a622-c450a43375a1.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/1806.logol.4b3f135d-5676-4b81-a622-c450a43375a1.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/2244.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2244.logol.0299ec8d-b78a-41aa-a478-7d46805ab242.1-31.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2244.logol.0299ec8d-b78a-41aa-a478-7d46805ab242.0-31-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2244.logol.0299ec8d-b78a-41aa-a478-7d46805ab242.0-31-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/2235.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/2235.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2235.logol.da801cd5-10f4-4077-8f87-0e93bc03d7b8.1-26.xml: 6 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 6 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2235.logol.da801cd5-10f4-4077-8f87-0e93bc03d7b8.0-26-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2235.logol.da801cd5-10f4-4077-8f87-0e93bc03d7b8.0-26-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/2242.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/2242.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2242.logol.c621f8d8-9da2-4301-90b4-55f47cc53020.1-29.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2242.logol.c621f8d8-9da2-4301-90b4-55f47cc53020.0-29-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2242.logol.c621f8d8-9da2-4301-90b4-55f47cc53020.0-29-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/2243.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/2243.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/2243.logol.7753bec1-2620-4d59-a2a5-549dbb286dc6.1-15.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/2243.logol.7753bec1-2620-4d59-a2a5-549dbb286dc6.0-15-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/2243.logol.7753bec1-2620-4d59-a2a5-549dbb286dc6.0-15-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/fix2244.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/fix2244.logol.61d28044-28e6-41ba-bb03-6da0de88f338.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/fix2244.logol.61d28044-28e6-41ba-bb03-6da0de88f338.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/fix2244.logol.61d28044-28e6-41ba-bb03-6da0de88f338.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/halt.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/halt.logol.49acd4d4-0660-4d6f-a876-1855a339d7e9.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/halt.logol.49acd4d4-0660-4d6f-a876-1855a339d7e9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/halt.logol.49acd4d4-0660-4d6f-a876-1855a339d7e9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/negcontent2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent2.logol.0ebee797-70b8-4df2-a87a-58fd066aa3a9.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent2.logol.0ebee797-70b8-4df2-a87a-58fd066aa3a9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent2.logol.0ebee797-70b8-4df2-a87a-58fd066aa3a9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/negcontent3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent3.logol.382dd322-7354-404a-b3d0-58f4329414ee.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent3.logol.382dd322-7354-404a-b3d0-58f4329414ee.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent3.logol.382dd322-7354-404a-b3d0-58f4329414ee.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/external.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external.logol.8f01517b-3692-4f16-9d1b-0edbd8cfbb52.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external.logol.8f01517b-3692-4f16-9d1b-0edbd8cfbb52.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external.logol.8f01517b-3692-4f16-9d1b-0edbd8cfbb52.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/end_of_stream1.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream1.logol.0be807ae-0a03-4b8e-8e93-f10ef0f0d1fe.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream1.logol.0be807ae-0a03-4b8e-8e93-f10ef0f0d1fe.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream1.logol.0be807ae-0a03-4b8e-8e93-f10ef0f0d1fe.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/end_of_stream2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/end_of_stream2.logol.d931812b-8bc6-4171-adc2-58dc145ac52e.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/end_of_stream2.logol.d931812b-8bc6-4171-adc2-58dc145ac52e.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/end_of_stream2.logol.d931812b-8bc6-4171-adc2-58dc145ac52e.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/metacontrol.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/metacontrol.logol.89dcc379-95fb-47dd-bf03-bdc825304caf.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/metacontrol.logol.89dcc379-95fb-47dd-bf03-bdc825304caf.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/metacontrol.logol.89dcc379-95fb-47dd-bf03-bdc825304caf.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/view_begin.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/view_begin.logol.aea81274-31cb-4e69-90af-95972147ea5f.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/view_begin.logol.aea81274-31cb-4e69-90af-95972147ea5f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/view_begin.logol.aea81274-31cb-4e69-90af-95972147ea5f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/begin_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin_postpone.logol.649d73a8-3433-4ba8-9b32-fd343adfb225.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin_postpone.logol.649d73a8-3433-4ba8-9b32-fd343adfb225.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin_postpone.logol.649d73a8-3433-4ba8-9b32-fd343adfb225.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/complement.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.b861884c-4df5-40b3-a104-de1ce145e5e7.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complement.logol.b861884c-4df5-40b3-a104-de1ce145e5e7.reverse.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complement.logol.b861884c-4df5-40b3-a104-de1ce145e5e7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complement.logol.b861884c-4df5-40b3-a104-de1ce145e5e7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/protein.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/protein.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option protein called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/protein.logol.f34acf31-8203-42bc-9f03-4a808449f533.1-23.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/protein.logol.f34acf31-8203-42bc-9f03-4a808449f533.0-23-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/protein.logol.f34acf31-8203-42bc-9f03-4a808449f533.0-23-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/morphism_var.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism_var.logol.30bd9296-1e87-481f-b6c3-5334319a447d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism_var.logol.30bd9296-1e87-481f-b6c3-5334319a447d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism_var.logol.30bd9296-1e87-481f-b6c3-5334319a447d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.4aecffcb-f10e-4590-9de0-0e723f0c86b5.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.4aecffcb-f10e-4590-9de0-0e723f0c86b5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.4aecffcb-f10e-4590-9de0-0e723f0c86b5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/cost_postpone.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/cost_postpone.logol.e7453c60-7574-49e9-8baa-7e3f22f5524b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/cost_postpone.logol.e7453c60-7574-49e9-8baa-7e3f22f5524b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/cost_postpone.logol.e7453c60-7574-49e9-8baa-7e3f22f5524b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/call_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model.logol.c0bcfb47-4ebf-4f7f-88d6-54cde708d065.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model.logol.c0bcfb47-4ebf-4f7f-88d6-54cde708d065.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model.logol.c0bcfb47-4ebf-4f7f-88d6-54cde708d065.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variablewithdistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance.logol.2a37998a-c954-460d-8c76-60097c65fc8d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance.logol.2a37998a-c954-460d-8c76-60097c65fc8d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance.logol.2a37998a-c954-460d-8c76-60097c65fc8d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/optimal.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR1)==>LOGOLVAR2%mydata%:{?"aaaa"},LOGOLVAR3%X1%:{#OPT[2,8]} [junit] mod1(LOGOLVAR4)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/optimal.lgd.87fa590b-4f31-405c-b3f6-7f33e40365fe.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/optimal.lgd.87fa590b-4f31-405c-b3f6-7f33e40365fe.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/optimal.lgd.87fa590b-4f31-405c-b3f6-7f33e40365fe.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/optimal.lgd.87fa590b-4f31-405c-b3f6-7f33e40365fe.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variablewitherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherror.logol.ad22868f-e014-4fd5-bef0-e9123a65ea3b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherror.logol.ad22868f-e014-4fd5-bef0-e9123a65ea3b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherror.logol.ad22868f-e014-4fd5-bef0-e9123a65ea3b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/anyspacer.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR4)==>LOGOLVAR5%X1%:{@[0,20]},"ccc" [junit] mod1(LOGOLVAR6)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/anyspacer.lgd.6a69b462-b492-4e68-bded-99f54d3fa136.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/anyspacer.lgd.6a69b462-b492-4e68-bded-99f54d3fa136.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/anyspacer.lgd.6a69b462-b492-4e68-bded-99f54d3fa136.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/anyspacer.lgd.6a69b462-b492-4e68-bded-99f54d3fa136.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/all.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR6)==>"ccc",.*,"ccc" [junit] mod1(LOGOLVAR7)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/all.lgd.fc1c248f-42a7-4dda-bd77-f773724faf54.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.lgd.fc1c248f-42a7-4dda-bd77-f773724faf54.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.lgd.fc1c248f-42a7-4dda-bd77-f773724faf54.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.lgd.fc1c248f-42a7-4dda-bd77-f773724faf54.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat_any.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_any.logol.f888370c-34c6-427e-a381-5d09a99d0d63.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_any.logol.f888370c-34c6-427e-a381-5d09a99d0d63.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_any.logol.f888370c-34c6-427e-a381-5d09a99d0d63.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/comment2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment2.logol.0e727e81-1176-4df5-945b-688f9ec75a57.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment2.logol.0e727e81-1176-4df5-945b-688f9ec75a57.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment2.logol.0e727e81-1176-4df5-945b-688f9ec75a57.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/negcontent.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR7)==>"aaaa",! "cgta":{#[3,5]} [junit] mod1(LOGOLVAR8)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/negcontent.lgd.d858073c-78ac-44d7-9e7a-aa212d76ffd6.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/negcontent.lgd.d858073c-78ac-44d7-9e7a-aa212d76ffd6.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/negcontent.lgd.d858073c-78ac-44d7-9e7a-aa212d76ffd6.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/negcontent.lgd.d858073c-78ac-44d7-9e7a-aa212d76ffd6.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/parent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror.logol.7a06fa62-eef9-41e2-a9dd-4c57833b7ec7.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror.logol.7a06fa62-eef9-41e2-a9dd-4c57833b7ec7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror.logol.7a06fa62-eef9-41e2-a9dd-4c57833b7ec7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/parent_exact.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_exact.logol.f18ee451-f03a-41c0-ba42-ec51358bc19d.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_exact.logol.f18ee451-f03a-41c0-ba42-ec51358bc19d.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_exact.logol.f18ee451-f03a-41c0-ba42-ec51358bc19d.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/all.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/all.logol.58209da6-a2a6-4aa7-8b48-9a8fd4219007.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/all.logol.58209da6-a2a6-4aa7-8b48-9a8fd4219007.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/all.logol.58209da6-a2a6-4aa7-8b48-9a8fd4219007.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variable_unknown.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_unknown.logol.9191c62c-1cfa-4cab-83a2-18a3f573f604.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_unknown.logol.9191c62c-1cfa-4cab-83a2-18a3f573f604.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_unknown.logol.9191c62c-1cfa-4cab-83a2-18a3f573f604.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/morphism.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.logol.c0718495-e7d0-40fb-abce-dae524766dd5.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.logol.c0718495-e7d0-40fb-abce-dae524766dd5.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.logol.c0718495-e7d0-40fb-abce-dae524766dd5.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/or_condition2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition2.logol.473138a7-ac4d-40f1-9ec6-f29de6164dc9.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition2.logol.473138a7-ac4d-40f1-9ec6-f29de6164dc9.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition2.logol.473138a7-ac4d-40f1-9ec6-f29de6164dc9.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/comment.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/comment.logol.5094cd2b-e4bd-44a9-ad7b-e23bac525e8b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/comment.logol.5094cd2b-e4bd-44a9-ad7b-e23bac525e8b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/comment.logol.5094cd2b-e4bd-44a9-ad7b-e23bac525e8b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/variable.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR8)==>"aaa","acgt":{_LOGOLVAR9%R1%},?LOGOLVAR9%R1% [junit] mod1(LOGOLVAR10)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/variable.lgd.a84847c5-43ac-4550-8c04-b976c322261b.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.lgd.a84847c5-43ac-4550-8c04-b976c322261b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.lgd.a84847c5-43ac-4550-8c04-b976c322261b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.lgd.a84847c5-43ac-4550-8c04-b976c322261b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/call_model2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model2.logol.823ad3be-488a-4934-8528-e3046c8d597b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model2.logol.823ad3be-488a-4934-8528-e3046c8d597b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model2.logol.823ad3be-488a-4934-8528-e3046c8d597b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/call_model3.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model3.logol.ae779723-eac8-4d51-a3d5-da2a1c1489cc.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model3.logol.ae779723-eac8-4d51-a3d5-da2a1c1489cc.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model3.logol.ae779723-eac8-4d51-a3d5-da2a1c1489cc.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/call_model4.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/call_model4.logol.f398e21a-66fe-4515-93c6-9fe5002afffe.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/call_model4.logol.f398e21a-66fe-4515-93c6-9fe5002afffe.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/call_model4.logol.f398e21a-66fe-4515-93c6-9fe5002afffe.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat0.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat0.logol.98d174d6-7e39-4a16-9820-87bc35b97190.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat0.logol.98d174d6-7e39-4a16-9820-87bc35b97190.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat0.logol.98d174d6-7e39-4a16-9820-87bc35b97190.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/reverse.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/reverse.logol.fd6d1aae-888a-40bf-b215-d73231e87a2c.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/reverse.logol.fd6d1aae-888a-40bf-b215-d73231e87a2c.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/reverse.logol.fd6d1aae-888a-40bf-b215-d73231e87a2c.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variable_postcontent_witherror.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent_witherror.logol.c8670cc0-6b32-4dad-8fce-6132f9554d73.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent_witherror.logol.c8670cc0-6b32-4dad-8fce-6132f9554d73.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent_witherror.logol.c8670cc0-6b32-4dad-8fce-6132f9554d73.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variablewitherroranddistance.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewitherroranddistance.logol.2428ca29-0f92-43d1-933e-e637dfde5c14.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewitherroranddistance.logol.2428ca29-0f92-43d1-933e-e637dfde5c14.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewitherroranddistance.logol.2428ca29-0f92-43d1-933e-e637dfde5c14.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/complex.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/complex.logol.06862754-ec07-493e-bf5c-87957747ebdc.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/complex.logol.06862754-ec07-493e-bf5c-87957747ebdc.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/complex.logol.06862754-ec07-493e-bf5c-87957747ebdc.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variablewithdistance2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variablewithdistance2.logol.e0ecde3a-87a9-4404-824c-9c6b30e59206.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 0 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variablewithdistance2.logol.e0ecde3a-87a9-4404-824c-9c6b30e59206.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variablewithdistance2.logol.e0ecde3a-87a9-4404-824c-9c6b30e59206.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variable_postcontent.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable_postcontent.logol.08448819-2698-421b-8e51-a2e393344154.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable_postcontent.logol.08448819-2698-421b-8e51-a2e393344154.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable_postcontent.logol.08448819-2698-421b-8e51-a2e393344154.0-41-all.xml [junit] cgttttgggg [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/multiple_model.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/multiple_model.logol.d9c128aa-94fa-4386-a99f-4dcedc7fe16b.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/multiple_model.logol.d9c128aa-94fa-4386-a99f-4dcedc7fe16b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/multiple_model.logol.d9c128aa-94fa-4386-a99f-4dcedc7fe16b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.91419e4a-d6c0-4eab-9ae9-e2c4c8119d36.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.91419e4a-d6c0-4eab-9ae9-e2c4c8119d36.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.91419e4a-d6c0-4eab-9ae9-e2c4c8119d36.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.91419e4a-d6c0-4eab-9ae9-e2c4c8119d36.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/begin.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR10)==>"aaaa",.*,LOGOLVAR11%X1%:{@[10,12],#[2,8]} [junit] mod1(LOGOLVAR12)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/begin.lgd.4d77a20f-b358-4312-9365-6b4b67207dea.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/begin.lgd.4d77a20f-b358-4312-9365-6b4b67207dea.1-41.xml: 10 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 10 [junit] WARN org.irisa.genouest.logol.Logol - Max number of match reached, other matches may be avaible. [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/begin.lgd.4d77a20f-b358-4312-9365-6b4b67207dea.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/begin.lgd.4d77a20f-b358-4312-9365-6b4b67207dea.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/ruby-cassiopee.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/variable.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.Logol - option all called [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.b12a9661-b155-4f3a-8bd8-e0ecac8a1fbb.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/variable.logol.b12a9661-b155-4f3a-8bd8-e0ecac8a1fbb.reverse.1-41.xml: 0 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/variable.logol.b12a9661-b155-4f3a-8bd8-e0ecac8a1fbb.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/variable.logol.b12a9661-b155-4f3a-8bd8-e0ecac8a1fbb.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/mycost.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/mycost.logol.e6f952fc-fd5d-44eb-819c-2d4970d4d165.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/mycost.logol.e6f952fc-fd5d-44eb-819c-2d4970d4d165.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/mycost.logol.e6f952fc-fd5d-44eb-819c-2d4970d4d165.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option m called with /build/logol-1.7.9/test/morphism.lgd [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Decoded grammar: [junit] mod1(LOGOLVAR12)==>"aaa",+"wc" "tgca" [junit] mod1(LOGOLVAR13)==*>SEQ1 [junit] INFO org.irisa.genouest.logol.utils.model.ModelConverter - Write grammar file ./test/tmp/morphism.lgd.0a6ebdfc-036f-4d64-8874-5140eacfb0f2.logol [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/morphism.lgd.0a6ebdfc-036f-4d64-8874-5140eacfb0f2.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/morphism.lgd.0a6ebdfc-036f-4d64-8874-5140eacfb0f2.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/morphism.lgd.0a6ebdfc-036f-4d64-8874-5140eacfb0f2.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat.logol.91c91632-d870-4781-8d92-dd296130c5dc.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat.logol.91c91632-d870-4781-8d92-dd296130c5dc.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat.logol.91c91632-d870-4781-8d92-dd296130c5dc.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/parent_witherror2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/parent_witherror2.logol.5ccdb1f6-9fa8-4474-869e-cec01f0724d8.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/parent_witherror2.logol.5ccdb1f6-9fa8-4474-869e-cec01f0724d8.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/parent_witherror2.logol.5ccdb1f6-9fa8-4474-869e-cec01f0724d8.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/external2.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/external2.logol.a737b00e-1d0d-484d-b89c-c7ff59423cd7.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/external2.logol.a737b00e-1d0d-484d-b89c-c7ff59423cd7.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/external2.logol.a737b00e-1d0d-484d-b89c-c7ff59423cd7.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat_interspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_interspacer.logol.73a6c540-37f7-4da4-a059-558d411931fa.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_interspacer.logol.73a6c540-37f7-4da4-a059-558d411931fa.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_interspacer.logol.73a6c540-37f7-4da4-a059-558d411931fa.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/notview.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notview.logol.6ce7e265-b057-4f3f-ad07-8bd6b93706a3.1-41.xml: 2 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 2 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notview.logol.6ce7e265-b057-4f3f-ad07-8bd6b93706a3.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notview.logol.6ce7e265-b057-4f3f-ad07-8bd6b93706a3.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/repeat_anyspacer.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/repeat_anyspacer.logol.bfe8faad-f690-4df7-9ea8-430ba67f0a8f.1-41.xml: 4 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 4 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/repeat_anyspacer.logol.bfe8faad-f690-4df7-9ea8-430ba67f0a8f.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/repeat_anyspacer.logol.bfe8faad-f690-4df7-9ea8-430ba67f0a8f.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/notrepeat.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/notrepeat.logol.b3d8e06c-edd7-4137-8429-a1502dc2b03b.1-41.xml: 1 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 1 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/notrepeat.logol.b3d8e06c-edd7-4137-8429-a1502dc2b03b.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/notrepeat.logol.b3d8e06c-edd7-4137-8429-a1502dc2b03b.0-41-all.xml [junit] For help, use option -h [junit] INFO org.irisa.genouest.logol.Logol - option conf called with /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - Using configuration file: /build/logol-1.7.9/test/logol.properties [junit] INFO org.irisa.genouest.logol.Logol - option g called with /build/logol-1.7.9/test/or_condition.logol [junit] INFO org.irisa.genouest.logol.Logol - option s called with /build/logol-1.7.9/test/test.fasta [junit] INFO org.irisa.genouest.logol.Logol - option max called with 10 [junit] INFO org.irisa.genouest.logol.utils.LogolUtils - Sequence not splitted, only 1 thread or job will analyse the sequence [junit] INFO org.irisa.genouest.logol.Logol - Start analyse to create grammar analyser [junit] Executing prolog for pre-analyse [junit] INFO org.irisa.genouest.logol.Logol - Analyse in progress.. [junit] WARN org.irisa.genouest.logol.SequenceAnalyser - Path to suffix search tool is not set in system environment. Will try to execute directly but may fail if not in PATH of current user [junit] INFO org.irisa.genouest.logol.Logol - ./test/tmp/or_condition.logol.96e20f45-23bb-47d6-9a28-d244cf48c0cc.1-41.xml: 3 [junit] INFO org.irisa.genouest.logol.Logol - Number of output match: 3 [junit] INFO org.irisa.genouest.logol.Logol - JOB OVER !!! [junit] INFO org.irisa.genouest.logol.Logol - RESULT FILES ARE AVAILABLE: [junit] INFO org.irisa.genouest.logol.Logol - - ./test/tmp/or_condition.logol.96e20f45-23bb-47d6-9a28-d244cf48c0cc.0-41-all.xml [junit] INFO org.irisa.genouest.logol.test.GrammarTest - Checking file ./test/tmp/or_condition.logol.96e20f45-23bb-47d6-9a28-d244cf48c0cc.0-41-all.xml [junit] ------------- ---------------- --------------- [junit] ------------- Standard Error ----------------- [junit] log4j:ERROR setFile(null,true) call failed. [junit] java.io.FileNotFoundException: /var/log/logol/logol.log (No such file or directory) [junit] at java.base/java.io.FileOutputStream.open0(Native Method) [junit] at java.base/java.io.FileOutputStream.open(FileOutputStream.java:298) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:237) [junit] at java.base/java.io.FileOutputStream.(FileOutputStream.java:158) [junit] at org.apache.log4j.FileAppender.setFile(FileAppender.java:294) [junit] at org.apache.log4j.FileAppender.activateOptions(FileAppender.java:165) [junit] at org.apache.log4j.config.PropertySetter.activate(PropertySetter.java:307) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:172) [junit] at org.apache.log4j.config.PropertySetter.setProperties(PropertySetter.java:104) [junit] at org.apache.log4j.PropertyConfigurator.parseAppender(PropertyConfigurator.java:842) [junit] at org.apache.log4j.PropertyConfigurator.parseCategory(PropertyConfigurator.java:768) [junit] at org.apache.log4j.PropertyConfigurator.parseCatsAndRenderers(PropertyConfigurator.java:672) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:516) [junit] at org.apache.log4j.PropertyConfigurator.doConfigure(PropertyConfigurator.java:580) [junit] at org.apache.log4j.helpers.OptionConverter.selectAndConfigure(OptionConverter.java:526) [junit] at org.apache.log4j.LogManager.(LogManager.java:127) [junit] at org.apache.log4j.Logger.getLogger(Logger.java:117) [junit] at org.irisa.genouest.logol.test.GrammarTest.(Unknown Source) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [junit] at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) [junit] at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) [junit] at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:490) [junit] at org.junit.runners.BlockJUnit4ClassRunner.createTest(BlockJUnit4ClassRunner.java:217) [junit] at org.junit.runners.BlockJUnit4ClassRunner$1.runReflectiveCall(BlockJUnit4ClassRunner.java:266) [junit] at org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:12) [junit] at org.junit.runners.BlockJUnit4ClassRunner.methodBlock(BlockJUnit4ClassRunner.java:268) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:78) [junit] at org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:57) [junit] at org.junit.runners.ParentRunner$3.run(ParentRunner.java:290) [junit] at org.junit.runners.ParentRunner$1.schedule(ParentRunner.java:71) [junit] at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:288) [junit] at org.junit.runners.ParentRunner.access$000(ParentRunner.java:58) [junit] at org.junit.runners.ParentRunner$2.evaluate(ParentRunner.java:268) [junit] at org.junit.runners.ParentRunner.run(ParentRunner.java:363) [junit] at junit.framework.JUnit4TestAdapter.run(JUnit4TestAdapter.java:38) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.run(JUnitTestRunner.java:534) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.launch(JUnitTestRunner.java:1196) [junit] at org.apache.tools.ant.taskdefs.optional.junit.JUnitTestRunner.main(JUnitTestRunner.java:1041) [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] line 4:0 missing NEWLINE at 'mod2' [junit] ------------- ---------------- --------------- [junit] Testcase: testAmbiguous(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch2(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch3(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is [junit] Testcase: testVMatch(org.irisa.genouest.logol.test.GrammarTest):SKIPPED: got: , expected: is BUILD SUCCESSFUL Total time: 5 minutes 6 seconds mkdir -p test/tmp test/results ant -f build.xml doc Buildfile: /build/logol-1.7.9/build.xml [taskdef] Could not load definitions from resource tasks.properties. It could not be found. doc: [exec] This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) [exec] restricted \write18 enabled. 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[exec] [18] (./logol.aux) [exec] [exec] Package rerunfilecheck Warning: File `logol.out' has changed. [exec] (rerunfilecheck) Rerun to get outlines right [exec] (rerunfilecheck) or use package `bookmark'. [exec] [exec] [exec] LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. [exec] [exec] ) [exec] (see the transcript file for additional information){/usr/share/texlive/texmf-d [exec] ist/fonts/enc/dvips/base/8r.enc} [exec] Output written on logol.pdf (18 pages, 95872 bytes). [exec] Transcript written on logol.log. BUILD SUCCESSFUL Total time: 26 seconds rm -f prolog/process.so chrpath -d prolog/logol.exe chrpath -d prolog/preanalyse.exe make[1]: Leaving directory '/build/logol-1.7.9' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/logol-1.7.9' dh_install rm -f debian/logol/usr/share/logol/prolog/*.c rm -f debian/logol/usr/share/logol/prolog/*.exe rm -f debian/logol/usr/share/logol/prolog/logol.properties rm -f debian/logol/usr/share/logol/tools/*.keep_old_script if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.sh; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/*.rb; fi if [ -e debian/logol ]; then chmod -f 755 debian/logol/usr/share/logol/tools/mycostfunction; fi if [ ! -e debian/logol-bin/usr/share/logol/prolog ]; then mkdir -p debian/logol-bin/usr/share/logol/prolog; fi ln -s /usr/lib/swi-prolog/lib/arm-linux/process.so debian/logol-bin/usr/share/logol/prolog/process.so make[1]: Leaving directory '/build/logol-1.7.9' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/logol-1.7.9' rm -f test/tmp/* rm -f test/results/* dh_installexamples make[1]: Leaving directory '/build/logol-1.7.9' dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing debian/rules override_dh_strip make[1]: Entering directory '/build/logol-1.7.9' dh_strip -Xlogol.exe -Xpreanalyse.exe make[1]: Leaving directory '/build/logol-1.7.9' dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package logol: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'logol' in '../logol_1.7.9-1_all.deb'. dpkg-deb: building package 'logol-bin' in '../logol-bin_1.7.9-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../logol_1.7.9-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15944 and its subdirectories I: Current time: Tue Aug 4 00:04:54 -12 2020 I: pbuilder-time-stamp: 1596542694