I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 7 15:01:29 -12 2020 I: pbuilder-time-stamp: 1602126089 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mapsembler2_2.2.4+dfsg-3.dsc] I: copying [./mapsembler2_2.2.4+dfsg.orig.tar.xz] I: copying [./mapsembler2_2.2.4+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Nov 2 18:23:45 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.4+dfsg-3.dsc dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.4+dfsg dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32295/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='d566db44e2894fa29e5fcb3e39953d48' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32295' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.yhFmYHq4Na/pbuilderrc_qgZp --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.yhFmYHq4Na/b1 --logfile b1/build.log mapsembler2_2.2.4+dfsg-3.dsc' SUDO_GID='116' SUDO_UID='112' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux cbxi4b 4.19.0-11-armmp #1 SMP Debian 4.19.146-1 (2020-09-17) armv7l GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 17 2019 bash -rwxr-xr-x 3 root root 26052 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 22432 Feb 28 2019 cat -rwxr-xr-x 1 root root 38868 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 38836 Feb 28 2019 chmod -rwxr-xr-x 1 root root 42972 Feb 28 2019 chown -rwxr-xr-x 1 root root 88376 Feb 28 2019 cp -rwxr-xr-x 1 root root 75516 Jan 17 2019 dash -rwxr-xr-x 1 root root 71648 Feb 28 2019 date -rwxr-xr-x 1 root root 51212 Feb 28 2019 dd -rwxr-xr-x 1 root root 55672 Feb 28 2019 df -rwxr-xr-x 1 root root 88444 Feb 28 2019 dir -rwxr-xr-x 1 root root 54872 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 18260 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 22 07:38 fusermount -rwxr-xr-x 1 root root 124508 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 5 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 26 2018 hostname -rwxr-xr-x 1 root root 43044 Feb 28 2019 ln -rwxr-xr-x 1 root root 34932 Jul 26 2018 login -rwxr-xr-x 1 root root 88444 Feb 28 2019 ls -rwxr-xr-x 1 root root 67036 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 47168 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 43040 Feb 28 2019 mknod -rwxr-xr-x 1 root root 26552 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 9 2019 more -rwsr-xr-x 1 root root 34268 Jan 9 2019 mount -rwxr-xr-x 1 root root 9688 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 84284 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Feb 28 2019 readlink -rwxr-xr-x 1 root root 42968 Feb 28 2019 rm -rwxr-xr-x 1 root root 26496 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 6 20:28 sh -> dash -rwxr-xr-x 1 root root 22384 Feb 28 2019 sleep -rwxr-xr-x 1 root root 51124 Feb 28 2019 stty -rwsr-xr-x 1 root root 42472 Jan 9 2019 su -rwxr-xr-x 1 root root 22392 Feb 28 2019 sync -rwxr-xr-x 1 root root 283324 Apr 23 2019 tar -rwxr-xr-x 1 root root 9808 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 63464 Feb 28 2019 touch -rwxr-xr-x 1 root root 18260 Feb 28 2019 true -rwxr-xr-x 1 root root 9636 Apr 22 07:38 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 9 2019 umount -rwxr-xr-x 1 root root 22380 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 88444 Feb 28 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/32295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libcppunit-1.14-0{a} libcppunit-dev{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 40.3 MB of archives. After unpacking 237 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libprocps7 armhf 2:3.3.15-2 [58.7 kB] Get: 9 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf procps armhf 2:3.3.15-2 [248 kB] Get: 11 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 12 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 14 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 15 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 16 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 17 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 18 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 19 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 20 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 21 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 22 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 24 http://deb.debian.org/debian buster/main armhf bc armhf 1.07.1-2+b1 [104 kB] Get: 25 http://deb.debian.org/debian buster/main armhf cmake-data all 3.13.4-1 [1476 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libarchive13 armhf 3.3.3-4+deb10u1 [277 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3 [62.3 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3 [119 kB] Get: 32 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u3 [1299 kB] Get: 33 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3 [323 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3 [137 kB] Get: 35 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 36 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 37 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u2 [89.7 kB] Get: 38 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u2 [202 kB] Get: 39 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 40 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 41 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u1 [297 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libjsoncpp1 armhf 1.7.4-3 [67.8 kB] Get: 46 http://deb.debian.org/debian buster/main armhf librhash0 armhf 1.3.8-1 [134 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libuv1 armhf 1.24.1-1 [98.0 kB] Get: 48 http://deb.debian.org/debian buster/main armhf cmake armhf 3.13.4-1 [2848 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 50 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 53 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 55 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 58 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 59 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 60 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 61 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 62 http://deb.debian.org/debian buster/main armhf hdf5-helpers armhf 1.10.4+repack-10 [35.2 kB] Get: 63 http://deb.debian.org/debian buster/main armhf libaec0 armhf 1.0.2-1 [21.9 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libsz2 armhf 1.0.2-1 [6584 B] Get: 65 http://deb.debian.org/debian buster/main armhf libaec-dev armhf 1.0.2-1 [19.7 kB] Get: 66 http://deb.debian.org/debian buster/main armhf libboost1.67-dev armhf 1.67.0-13+deb10u1 [8388 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libboost-dev armhf 1.67.0.1 [3860 B] Get: 68 http://deb.debian.org/debian buster/main armhf libcppunit-1.14-0 armhf 1.14.0-3 [131 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libcppunit-dev armhf 1.14.0-3 [193 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 71 http://deb.debian.org/debian buster/main armhf libhdf5-103 armhf 1.10.4+repack-10 [1285 kB] Get: 72 http://deb.debian.org/debian buster/main armhf libhdf5-cpp-103 armhf 1.10.4+repack-10 [123 kB] Get: 73 http://deb.debian.org/debian buster/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [207 kB] Get: 74 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [112 kB] Get: 75 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [182 kB] Get: 76 http://deb.debian.org/debian buster/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB] Get: 77 http://deb.debian.org/debian buster/main armhf libhdf5-dev armhf 1.10.4+repack-10 [2515 kB] Fetched 40.3 MB in 8s (5330 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../06-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:armhf. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_armhf.deb ... Unpacking libprocps7:armhf (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019051400_all.deb ... 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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:armhf (1.17-3) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:armhf (8.3.0-6) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:armhf (1.3.8-1) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:armhf (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:armhf (1.17-3) ... Setting up libboost-dev:armhf (1.67.0.1) ... Setting up libcppunit-dev (1.14.0-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up readline-common (7.0-5) ... 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mapsembler2-2.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mapsembler2-2.2.4+dfsg' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/mapsembler2-2.2.4+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/mapsembler2-2.2.4+dfsg' mkdir mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake .. && make -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.28.1") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - failed ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[3]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Alloc = std::allocator::Count>]': /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type 'std::vector::Count, std::allocator::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc:672:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<64>::Count}; _Tp = gatb::core::kmer::impl::Kmer<64>::Count; _Alloc = std::allocator::Count>]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::Count, std::allocator::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<96>::Count}; _Tp = gatb::core::kmer::impl::Kmer<96>::Count; _Alloc = std::allocator::Count>]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::Count, std::allocator::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {gatb::core::kmer::impl::Kmer<128>::Count}; _Tp = gatb::core::kmer::impl::Kmer<128>::Count; _Alloc = std::allocator::Count>]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::Count, std::allocator::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >'} changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 In file included from /usr/include/c++/8/set:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject::operator()() [with T = long long unsigned int]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/set:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair::Count, std::allocator::Count> >*>; _KeyOfValue = std::_Select1st::Count, std::allocator::Count> >*> >; _Compare = std::less; _Alloc = std::allocator::Count, std::allocator::Count> >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 In file included from /usr/include/c++/8/bits/char_traits.h:39, from /usr/include/c++/8/string:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/IThread.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algobase.h: In function 'void std::iter_swap(_ForwardIterator1, _ForwardIterator2) [with _ForwardIterator1 = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _ForwardIterator2 = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >]': /usr/include/c++/8/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 iter_swap(_ForwardIterator1 __a, _ForwardIterator2 __b) ^~~~~~~~~ /usr/include/c++/8/bits/stl_algobase.h:120:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Distance = int; _Tp = gatb::core::kmer::impl::Kmer<32>::Count; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:84:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::iter_swap(__result, __b); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:86:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::iter_swap(__result, __c); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:88:20: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::iter_swap(__result, __a); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 32]': /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type 'std::vector::Count, std::allocator::Count> >::iterator' {aka '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >'} changed in GCC 7.1 _M_range_insert(__pos, __first, __last, ^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h:1549:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 64]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 96]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 128]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 128]::]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 64]::]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 96]::]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator::Count*, std::vector::Count, std::allocator::Count> > >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'void gatb::core::tools::dp::IDispatcher::IteratorCommand::execute() [with Item = gatb::core::debruijn::impl::Node; Functor = gatb::core::debruijn::impl::BranchingAlgorithm::execute() [with unsigned int span = 32]::]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree::Count, std::allocator::Count> >*>, std::_Select1st::Count, std::allocator::Count> >*> >, std::less, std::allocator::Count, std::allocator::Count> >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator::Count, std::allocator::Count> >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /usr/include/c++/8/deque:66, from /usr/include/boost/detail/container_fwd.hpp:91, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /usr/include/c++/8/bits/deque.tcc: In function 'std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = gatb::core::debruijn::impl::NodeNt]': /usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first, ^~~~ /usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc: In member function 'void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator; _Tp = gatb::core::debruijn::impl::NodeNt; _Alloc = std::allocator]': /usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 deque<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__first, __last, __pos - difference_type(__n)); ^~~ /usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__mid, __last, __old_start); ^~~ /usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__first, __last, __pos); ^~~ /usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__first, __mid, __pos); ^~~ /usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc: In member function 'std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = gatb::core::debruijn::impl::NodeNt; _Alloc = std::allocator]': /usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 _M_erase_at_end(std::copy(__x.begin(), __x.end(), ^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__x.begin(), __mid, this->_M_impl._M_start); ^~~ /usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::deque >::const_iterator' {aka 'std::_Deque_iterator'} changed in GCC 7.1 [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::debruijn::impl::BranchingNode&}; _Tp = gatb::core::debruijn::impl::BranchingNode; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector >::iterator' {aka '__gnu_cxx::__normal_iterator > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In member function 'std::pair std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = gatb::core::debruijn::impl::BranchingNode; _Val = gatb::core::debruijn::impl::BranchingNode; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]': /usr/include/c++/8/bits/stl_tree.h:2146:5: note: parameter passing for argument of type 'std::_Rb_tree, std::less, std::allocator >::const_iterator' {aka 'std::_Rb_tree_const_iterator'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In member function 'std::set gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type 'std::set::iterator' {aka 'std::_Rb_tree_const_iterator'} changed in GCC 7.1 std::set Graph::neighbors (std::set::iterator first, std::set::iterator last) const ^~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:2139:25: note: parameter passing for argument of type 'std::set::iterator' {aka 'std::_Rb_tree_const_iterator'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void gatb::core::debruijn::impl::Graph::neighbors(IteratorInput, IteratorInput) const [with T = gatb::core::debruijn::impl::BranchingNode; IteratorInput = std::_Rb_tree_const_iterator]::Cmd::execute()': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::IntegerTemplate, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >&}; _Tp = gatb::core::tools::math::IntegerTemplate, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >; _Alloc = std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > >::iterator' {aka '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/api/Iterable.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In constructor 'gatb::core::debruijn::impl::BranchingTerminator::BranchingTerminator(const gatb::core::debruijn::impl::Graph&)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /usr/include/c++/8/bits/stl_algo.h: In function 'bool std::binary_search(_FIter, _FIter, const _Tp&) [with _FIter = __gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >; _Tp = gatb::core::tools::math::IntegerTemplate, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >]': /usr/include/c++/8/bits/stl_algo.h:2247:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 binary_search(_ForwardIterator __first, _ForwardIterator __last, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:2247:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'bool gatb::core::debruijn::impl::BranchingTerminator::is_indexed(const gatb::core::debruijn::impl::Node&) const': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'virtual void gatb::core::debruijn::impl::BranchingTerminator::mark(const gatb::core::debruijn::impl::Edge&)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'virtual bool gatb::core::debruijn::impl::BranchingTerminator::is_marked(const gatb::core::debruijn::impl::Node&) const': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp: In member function 'virtual void gatb::core::debruijn::impl::BranchingTerminator::mark(const gatb::core::debruijn::impl::Node&)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:42:69: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >*, std::vector, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> >, std::allocator, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > > > >' changed in GCC 7.1 bool contains(const Item& elem) const { return binary_search(liste.begin(), liste.end(), elem); } ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'bool gatb::core::debruijn::impl::MonumentTraversal::validate_consensuses(std::set&, gatb::core::debruijn::impl::Path&)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:675:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set::size_type' {aka 'unsigned int'} [-Wformat=] if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:20: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /usr/include/c++/8/bits/stl_tree.h: In member function 'void std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_insert_unique(_II, _II) [with _InputIterator = std::_Rb_tree_const_iterator; _Key = gatb::core::debruijn::impl::Path; _Val = gatb::core::debruijn::impl::Path; _KeyOfValue = std::_Identity; _Compare = std::less; _Alloc = std::allocator]': /usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 _Rb_tree<_Key, _Val, _KoV, _Cmp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_tree.h:2463:7: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 In file included from /usr/include/c++/8/set:61, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /usr/include/c++/8/bits/stl_set.h: In member function 'std::set gatb::core::debruijn::impl::MonumentTraversal::all_consensuses_between(gatb::core::debruijn::impl::Direction, const gatb::core::debruijn::impl::Node&, const gatb::core::debruijn::impl::Node&, int, std::set, gatb::core::tools::math::LargeInt<2>, gatb::core::tools::math::LargeInt<3>, gatb::core::tools::math::LargeInt<4> > >, gatb::core::debruijn::impl::Path, bool&)': /usr/include/c++/8/bits/stl_set.h:567:4: note: parameter passing for argument of type 'std::_Rb_tree_const_iterator' changed in GCC 7.1 { _M_t._M_insert_unique(__first, __last); } ^~~~ [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/vector:69, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<1>&}; _Tp = gatb::core::tools::math::LargeInt<1>; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<2>&}; _Tp = gatb::core::tools::math::LargeInt<2>; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<3>&}; _Tp = gatb::core::tools::math::LargeInt<3>; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const gatb::core::tools::math::LargeInt<4>&}; _Tp = gatb::core::tools::math::LargeInt<4>; _Alloc = std::allocator >]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector, std::allocator > >::iterator' {aka '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >'} changed in GCC 7.1 In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<1>]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/set:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/set:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/set:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/set:60, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:30, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long long int; _Val = std::pair >*>; _KeyOfValue = std::_Select1st >*> >; _Compare = std::less; _Alloc = std::allocator >*> >]': /usr/include/c++/8/bits/stl_tree.h:2411:7: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/map:61, from /usr/include/boost/detail/container_fwd.hpp:94, from /usr/include/boost/container_hash/extensions.hpp:22, from /usr/include/boost/container_hash/hash.hpp:760, from /usr/include/boost/type_index/stl_type_index.hpp:43, from /usr/include/boost/type_index.hpp:29, from /usr/include/boost/variant/variant.hpp:21, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_map.h: In member function 'T& gatb::core::system::impl::ThreadObject::operator()() [with T = gatb::core::tools::collections::impl::BagCache >]': /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, /usr/include/c++/8/bits/stl_map.h:518:8: note: parameter passing for argument of type 'std::_Rb_tree >*>, std::_Select1st >*> >, std::less, std::allocator >*> > >::const_iterator' {aka 'std::_Rb_tree_const_iterator >*> >'} changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 32]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 64]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<2>]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 96]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<3>]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In member function 'void gatb::core::kmer::impl::DebloomAlgorithm::createCFP(gatb::core::tools::collections::Collection::Type>*, gatb::core::tools::misc::IProperties*, u_int64_t&) [with unsigned int span = 128]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/Iterator.hpp:36, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/api/ICommand.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_vector.h: In function 'gatb::core::tools::collections::Container* gatb::core::tools::storage::impl::StorageTools::loadContainer(gatb::core::tools::storage::impl::Group&, const string&) [with T = gatb::core::tools::math::LargeInt<4>]': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<4>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<3>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<2>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Val_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1821:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __unguarded_linear_insert(_RandomAccessIterator __last, ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Distance = int; _Tp = gatb::core::tools::math::LargeInt<1>; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from /usr/include/boost/move/algorithm.hpp:32, from /usr/include/boost/move/move.hpp:32, from /usr/include/boost/variant/detail/move.hpp:28, from /usr/include/boost/variant/detail/initializer.hpp:23, from /usr/include/boost/variant/variant.hpp:30, from /usr/include/boost/variant.hpp:17, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/IteratorHelpers.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 32]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 64]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 96]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'void gatb::core::kmer::impl::PartitionsByVectorCommand::execute() [with unsigned int span = 128]': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o [ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o [ 85%] Linking CXX static library ../lib/libgatbcore.a make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 85%] Built target gatbcore-static make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/main.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 92%] Linking CXX executable mapsembler2_extremities make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 92%] Built target mapsembler2_extremities make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbginfo make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 96%] Linking CXX executable ../bin/dbginfo make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 96%] Built target dbginfo make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbgh5 make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [100%] Linking CXX executable ../bin/dbgh5 make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Built target dbgh5 make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Built target emphf_copyasis make[3]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' cd mapsembler2_extend && make k=29 make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)': ../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)': ../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()': ../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(blooma, sizeof(unsigned char), nchar, file_data); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)': ../minia/Terminator.cpp:337:25: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'unsigned int' [-Wformat=] fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Traversal.cpp: In member function 'bool MonumentTraversal::find_starting_kmer(kmer_type, kmer_type&)': ../minia/Traversal.cpp:352:43: warning: format '%lu' expects argument of type 'long unsigned int', but argument 5 has type 'std::set::size_type' {aka 'unsigned int'} [-Wformat=] if (debug) printf("depth %d useless int %d and starting belongs %d nb involved nodes %lu\n",frontline.depth,useless_int,all_involved_extensions.find(starting_kmer) != all_involved_extensions.end(),all_involved_extensions.size()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Traversal.cpp: In member function 'bool MonumentTraversal::validate_consensuses(std::set >, char*, int&)': ../minia/Traversal.cpp:820:28: warning: format '%lu' expects argument of type 'long unsigned int', but argument 4 has type 'std::__cxx11::basic_string::size_type' {aka 'unsigned int'} [-Wformat=] if (debug) printf("bubble path %d: %s (len=%lu)\n",path_number,(*it).c_str(),(*it).length()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ ../minia/Traversal.cpp:841:23: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::set >::size_type' {aka 'unsigned int'} [-Wformat=] if (debug) printf("%lu-bubble mean %d, stdev %.1f\n",consensuses.size(),mean,stdev); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/deque:66, from /usr/include/c++/8/queue:60, from ../minia/Traversal.h:5, from ../minia/Traversal.cpp:3: /usr/include/c++/8/bits/deque.tcc: In function 'std::_Deque_iterator<_Tp, _Tp&, _Tp*> std::copy(std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, const _Tp&, const _Tp*>, std::_Deque_iterator<_Tp, _Tp&, _Tp*>) [with _Tp = kmer_strand_nt]': /usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 copy(_Deque_iterator<_Tp, const _Tp&, const _Tp*> __first, ^~~~ /usr/include/c++/8/bits/deque.tcc:986:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc: In member function 'void std::deque<_Tp, _Alloc>::_M_insert_aux(std::deque<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::deque<_Tp, _Alloc>::size_type) [with _ForwardIterator = std::_Deque_iterator; _Tp = kmer_strand_nt; _Alloc = std::allocator]': /usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 deque<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/deque.tcc:758:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__first, __last, __pos - difference_type(__n)); ^~~ /usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:781:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__mid, __last, __old_start); ^~~ /usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:792:7: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__first, __last, __pos); ^~~ /usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:821:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__first, __mid, __pos); ^~~ /usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:832:5: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc: In member function 'std::deque<_Tp, _Alloc>& std::deque<_Tp, _Alloc>::operator=(const std::deque<_Tp, _Alloc>&) [with _Tp = kmer_strand_nt; _Alloc = std::allocator]': /usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 _M_erase_at_end(std::copy(__x.begin(), __x.end(), ^~~~~~~~~~~~~~~ /usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:117:6: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 std::copy(__x.begin(), __mid, this->_M_impl._M_start); ^~~ /usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::_Deque_iterator' changed in GCC 7.1 /usr/include/c++/8/bits/deque.tcc:122:8: note: parameter passing for argument of type 'std::deque >::const_iterator' {aka 'std::_Deque_iterator'} changed in GCC 7.1 g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function 'void AssocSet::print_total_size()': ../minia/Set.cpp:132:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("Assoc set size: %li\n",liste.size()); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ ../minia/Set.cpp:133:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("Assoc set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ ../minia/Set.cpp:133:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] ../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ ../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=] ../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] ../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=] ../minia/Set.cpp:134:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] ../minia/Set.cpp: In member function 'void AssocPairedSet::print()': ../minia/Set.cpp:242:12: warning: format '%lu' expects argument of type 'long unsigned int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("print %lu elems \n",liste.size()); ^~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ ../minia/Set.cpp: In member function 'void AssocPairedSet::print_total_size()': ../minia/Set.cpp:298:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("Assoc paired set size: %li\n",liste.size()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ ../minia/Set.cpp:299:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("Assoc paired set capacity: listekmer %li liste val%li\n",liste.capacity(),liste_value.capacity()); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ ../minia/Set.cpp:299:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] ../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 2 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("%li *%li + %li* %li = %li MB \n",liste.capacity(),sizeof(set_elem),liste_value.capacity(),sizeof(set_value_t), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ ../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 3 has type 'unsigned int' [-Wformat=] ../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 4 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] ../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=] ../minia/Set.cpp:300:12: warning: format '%li' expects argument of type 'long int', but argument 6 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] ../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)': ../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../minia/Set.h:10, from ../minia/Set.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../minia/Set.h:10, from ../minia/Set.cpp:1: /usr/include/c++/8/bits/stl_vector.h: In member function 'virtual void ListSet::insert(set_elem)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In member function 'void AssocPairedSet::load_branching(BinaryBank*)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __final_insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1880:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../minia/Pool.h:11, from ../minia/Hash16.h:12, from ../minia/Set.h:6, from ../minia/Set.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'virtual void AssocPairedSet::finalize()': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'virtual void ListSet::finalize()': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h: In member function 'virtual void AssocSet::finalize()': /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1971:31: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__final_insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_write), 0); //erase previous file ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_read), 0); //erase previous file ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'char* return_file_name(const char*)': ../minia/Utils.cpp:28:26: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(fileName,"%s.%s",prefix,suffix); ^~~~~~~ In file included from /usr/include/stdio.h:873, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(current_path,sizeof(current_path)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:69, from ../minia/SortingCount.h:8, from ../minia/SortingCount.cpp:1: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __insertion_sort(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1840:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/8/bits/stl_algo.h:61, from /usr/include/c++/8/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/8/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = long long unsigned int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, ^~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/8/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]': /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 __introsort_loop(_RandomAccessIterator __first, ^~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1940:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/8/bits/stl_algo.h:1954:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__cut, __last, __depth_limit, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:45:24: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); ^~~~~~~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../minia/SortingCount.h:8, from ../minia/SortingCount.cpp:1: /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/algorithm:62, from ../minia/Utils.h:9, from ../minia/SortingCount.h:17, from ../minia/SortingCount.cpp:1: /usr/include/c++/8/bits/stl_algo.h:1968:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__introsort_loop(__first, __last, ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ std::__lg(__last - __first) * 2, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __comp); ~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1885:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __first + int(_S_threshold), __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_algo.h:1890:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 std::__insertion_sort(__first, __last, __comp); ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:844:1: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 } ^ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:11: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_debloom_write), 0); //erase previous file ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o commons.o -c commons.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial In file included from /usr/include/c++/8/vector:69, from ../minia/Set.h:10, from ../minia/Terminator.h:13, from IterativeExtensions.h:42, from IterativeExtensions.cpp:38: /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const kmer_strand_depth&}; _Tp = kmer_strand_depth; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector::iterator' {aka '__gnu_cxx::__normal_iterator >'} changed in GCC 7.1 /usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {kmer_strand_depth}; _Tp = kmer_strand_depth; _Alloc = std::allocator]': /usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ^~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/8/vector:64, from ../minia/Set.h:10, from ../minia/Terminator.h:13, from IterativeExtensions.h:42, from IterativeExtensions.cpp:38: /usr/include/c++/8/bits/stl_vector.h: In static member function 'static void IterativeExtensions::construct_linear_seqs(std::__cxx11::string, std::__cxx11::string, int, std::__cxx11::string, int, int, parcours_t, bool)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ /usr/include/c++/8/bits/stl_vector.h: In static member function 'static void IterativeExtensions::construct_linear_seqs_paired(std::__cxx11::string, std::__cxx11::string, int, std::__cxx11::string, int, int)': /usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 _M_realloc_insert(end(), __x); ^~~~~~~~~~~~~~~~~ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial GraphOutput.cpp: In member function 'void GraphOutput::print_starter_head(int, char*)': GraphOutput.cpp:145:31: warning: format '%ld' expects argument of type 'long int', but argument 6 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(starters_file,"\"Starter_%d\":{\"data\":{\"id\":\"S%d\", \"sequence\":\"%s\", \"length\":%ld,\n", index,index, sequence, strlen(sequence)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~ GraphOutput.cpp: In member function 'void GraphOutput::print_node(long int, char*)': GraphOutput.cpp:204:32: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(nodes_file," { \"data\": { \"id\":\"n%ld\", \"sequence\":\"%s\", \"length\":%ld}}\n",index,ascii_node, strlen(ascii_node)); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial mapsembler_extend.cpp: In function 'int main(int, char**)': mapsembler_extend.cpp:260:21: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'unsigned int' [-Wformat=] fprintf (stderr,"taille cell %lu \n", sizeof(cell)); ^~~~~~~~~~~~~~~~~~~~ mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' cd kissreads_graph && make k=29 make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function 'int DBG::output_graph(FILE*, int, int&, bool, bool)': DeBruijnGraph.cpp:405:21: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'size_t' {aka 'unsigned int'} [-Wformat=] fprintf(out,", \"length\": %lu", strlen(all_nodes[i]->fragment->fragment_sequence)); ^~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, ht->posLastFind); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)': read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(szMagicKey, 1, 4, fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cchKey); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cItems); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cDeletedItems); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cchKey); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(rgchKeys, 1, cchKey, fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL' READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro 'READ_UL' READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)': read_coherence_mapsembler/read_coherence.cpp:988:25: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ current_read_group, number_substitutions, ~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/read_coherence.cpp:1002:25: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ current_read_group, substarters[*nb_consensuses], ~~~~~~~~~~~~~~~~~~ g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 Loader.cpp: In function 'void load_json_rec_global(json_value*, int)': Loader.cpp:114:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'std::vector::size_type' {aka 'unsigned int'} [-Wformat=] printf("adding node %s = %ld\n", value->string_value, global_dbg->all_nodes.size()); ^~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' cd kissreads && make k=29 make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function 'HashFind': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFindLast': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, ht->posLastFind); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFirstBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashNextBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashDoLoad': src/libchash.c:1407:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(szMagicKey, 1, 4, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cchKey); ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cItems); ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cDeletedItems); ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cchKey); ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(rgchKeys, 1, cchKey, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro 'READ_UL' READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ ^~~~~~~ src/libchash.c: In function 'SparseRead': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:3: note: in expansion of macro 'READ_UL' READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads' make[1]: Leaving directory '/build/mapsembler2-2.2.4+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/mapsembler2-2.2.4+dfsg' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/mapsembler2-2.2.4+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler_extend contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler2_kissreads_graph contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mapsembler2/usr/bin/mapsembler2_extremities contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libdl.so.2 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg-3_armhf.deb'. dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg-3_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mapsembler2_2.2.4+dfsg-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32295 and its subdirectories I: Current time: Wed Oct 7 16:09:28 -12 2020 I: pbuilder-time-stamp: 1602130168