I: pbuilder: network access will be disabled during build I: Current time: Sat May 16 06:23:47 -12 2020 I: pbuilder-time-stamp: 1589653427 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [muscle_3.8.1551-2.dsc] I: copying [./muscle_3.8.1551.orig.tar.gz] I: copying [./muscle_3.8.1551-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Feb 22 09:22:01 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./muscle_3.8.1551-2.dsc dpkg-source: info: extracting muscle in muscle-3.8.1551 dpkg-source: info: unpacking muscle_3.8.1551.orig.tar.gz dpkg-source: info: unpacking muscle_3.8.1551-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 01_Fix_FTBFS_Hurd.patch dpkg-source: info: applying makefile.patch I: using fakeroot in build. I: Installing the build-deps -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After unpacking 63.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2 [103 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u1 [110 kB] Get: 10 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u1 [65.5 kB] Get: 11 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 12 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 13 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 14 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 24 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u2 [1101 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+b3 [595 kB] Get: 28 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 29 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 30 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Fetched 18.2 MB in 3s (6354 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_armhf.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking libmagic1:armhf (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_armhf.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_armhf.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.12-2_armhf.deb ... Unpacking libsigsegv2:armhf (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_armhf.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Preparing to unpack .../27-libcroco3_0.6.12-3_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-3) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_armhf.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:armhf (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:armhf (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:armhf (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:armhf (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:armhf (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:armhf (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:armhf (0.0.6-3) ... Setting up libbsd0:armhf (0.9.1-2) ... Setting up libelf1:armhf (0.176-1.1) ... Setting up libxml2:armhf (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:armhf (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/muscle-3.8.1551/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package muscle dpkg-buildpackage: info: source version 1:3.8.1551-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_auto_clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/muscle-3.8.1551' dh_auto_build -- 'GPP=$(CXX)' make -j3 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/muscle-3.8.1551' g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligngivenpath.cpp -o aligngivenpath.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligngivenpathsw.cpp -o aligngivenpathsw.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligntwomsas.cpp -o aligntwomsas.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aligntwoprofs.cpp -o aligntwoprofs.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 aln.cpp -o aln.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 alpha.cpp -o alpha.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 anchors.cpp -o anchors.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 bittraceback.cpp -o bittraceback.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 blosum62.cpp -o blosum62.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 blosumla.cpp -o blosumla.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 clust.cpp -o clust.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 cluster.cpp -o cluster.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 clwwt.cpp -o clwwt.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 color.cpp -o color.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 cons.cpp -o cons.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 diaglist.cpp -o diaglist.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 diffobjscore.cpp -o diffobjscore.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 diffpaths.cpp -o diffpaths.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 difftrees.cpp -o difftrees.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 difftreese.cpp -o difftreese.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 distcalc.cpp -o distcalc.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 distfunc.cpp -o distfunc.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat 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-Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setgscweights.cpp -o setgscweights.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 setnewhandler.cpp -o setnewhandler.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 spfast.cpp -o spfast.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 sptest.cpp -o sptest.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 stabilize.cpp -o stabilize.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 subfam.cpp -o subfam.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 subfams.cpp -o subfams.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 sw.cpp -o sw.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 termgaps.cpp -o termgaps.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 textfile.cpp -o textfile.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 threewaywt.cpp -o threewaywt.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tomhydro.cpp -o tomhydro.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 traceback.cpp -o traceback.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tracebackopt.cpp -o tracebackopt.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 tracebacksw.cpp -o tracebacksw.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 treefrommsa.cpp -o treefrommsa.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 typetostr.cpp -o typetostr.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 upgma2.cpp -o upgma2.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 usage.cpp -o usage.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 validateids.cpp -o validateids.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 vtml2.cpp -o vtml2.o g++ -c -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 writescorefile.cpp -o writescorefile.o g++ -g -O2 -ffile-prefix-map=/build/muscle-3.8.1551=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -funroll-loops -Winline -DNDEBUG=1 -o muscle aligngivenpath.o aligngivenpathsw.o aligntwomsas.o aligntwoprofs.o aln.o alpha.o anchors.o bittraceback.o blosum62.o blosumla.o clust.o cluster.o clwwt.o color.o cons.o diaglist.o diffobjscore.o diffpaths.o difftrees.o difftreese.o distcalc.o distfunc.o distpwkimura.o domuscle.o dosp.o dpreglist.o drawtree.o edgelist.o enumopts.o enumtostr.o estring.o fasta.o fasta2.o fastclust.o fastdist.o fastdistjones.o fastdistkbit.o fastdistkmer.o fastdistmafft.o fastdistnuc.o fastscorepath2.o finddiags.o finddiagsn.o glbalign.o glbalign352.o glbaligndiag.o glbalignle.o glbalignsimple.o glbalignsp.o glbalignspn.o glbalignss.o glbalndimer.o globals.o globalslinux.o globalsosx.o globalsother.o globalswin32.o gonnet.o henikoffweight.o henikoffweightpb.o html.o hydro.o intmath.o local.o main.o makerootmsa.o makerootmsab.o maketree.o mhack.o mpam200.o msa.o msa2.o msadistkimura.o msf.o muscle.o muscleout.o nucmx.o nwdasimple.o nwdasimple2.o nwdasmall.o nwrec.o nwsmall.o objscore.o objscore2.o objscoreda.o onexception.o options.o outweights.o pam200mafft.o params.o phy.o phy2.o phy3.o phy4.o phyfromclust.o phyfromfile.o physeq.o phytofile.o posgap.o ppscore.o profdb.o profile.o profilefrommsa.o progalign.o progress.o progressivealign.o pwpath.o readmx.o realigndiffs.o realigndiffse.o refine.o refinehoriz.o refinesubfams.o refinetree.o refinetreee.o refinevert.o refinew.o savebest.o scoredist.o scoregaps.o scorehistory.o scorepp.o seq.o seqvect.o setblosumweights.o setgscweights.o setnewhandler.o spfast.o sptest.o stabilize.o subfam.o subfams.o sw.o termgaps.o textfile.o threewaywt.o tomhydro.o traceback.o tracebackopt.o tracebacksw.o treefrommsa.o typetostr.o upgma2.o usage.o validateids.o vtml2.o writescorefile.o -lm -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/muscle-3.8.1551' make[1]: Leaving directory '/build/muscle-3.8.1551' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'muscle' in '../muscle_3.8.1551-2_armhf.deb'. dpkg-deb: building package 'muscle-dbgsym' in '../muscle-dbgsym_3.8.1551-2_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../muscle_3.8.1551-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13627 and its subdirectories I: Current time: Sat May 16 06:28:31 -12 2020 I: pbuilder-time-stamp: 1589653711