I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 3 08:08:35 +14 2021 I: pbuilder-time-stamp: 1630606115 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [suitesparse_5.4.0+dfsg-1.dsc] I: copying [./suitesparse_5.4.0+dfsg.orig.tar.xz] I: copying [./suitesparse_5.4.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 27 23:12:57 2018 +14 gpgv: using RSA key 53951D95272E0C5B82BE8C4A2CECE9350ECEBE4A gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./suitesparse_5.4.0+dfsg-1.dsc dpkg-source: info: extracting suitesparse in suitesparse-5.4.0+dfsg dpkg-source: info: unpacking suitesparse_5.4.0+dfsg.orig.tar.xz dpkg-source: info: unpacking suitesparse_5.4.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying buildflags.patch dpkg-source: info: applying mongoose-build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/6118/tmp/hooks/D01_modify_environment starting debug: Running on virt64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/6118/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/6118/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=16807b1fc9a6422bb172867c716226c4 LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=6118 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.FqEcNz8icf/pbuilderrc_Ff7w --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.FqEcNz8icf/b2 --logfile b2/build.log suitesparse_5.4.0+dfsg-1.dsc' SUDO_GID=114 SUDO_UID=108 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:8000/ I: uname -a Linux i-capture-the-hostname 5.10.0-8-arm64 #1 SMP Debian 5.10.46-4 (2021-08-03) aarch64 GNU/Linux I: ls -l /bin total 3328 -rwxr-xr-x 1 root root 767656 Apr 18 2019 bash -rwxr-xr-x 3 root root 26052 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 26052 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 9636 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 22432 Mar 1 2019 cat -rwxr-xr-x 1 root root 38868 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 38836 Mar 1 2019 chmod -rwxr-xr-x 1 root root 42972 Mar 1 2019 chown -rwxr-xr-x 1 root root 88376 Mar 1 2019 cp -rwxr-xr-x 1 root root 75516 Jan 18 2019 dash -rwxr-xr-x 1 root root 71648 Mar 1 2019 date -rwxr-xr-x 1 root root 51212 Mar 1 2019 dd -rwxr-xr-x 1 root root 55672 Mar 1 2019 df -rwxr-xr-x 1 root root 88444 Mar 1 2019 dir -rwxr-xr-x 1 root root 54872 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 22364 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 18260 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 47356 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 21980 Apr 23 2020 fusermount -rwxr-xr-x 1 root root 124508 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 64232 Jan 6 2019 gzip -rwxr-xr-x 1 root root 13784 Sep 27 2018 hostname -rwxr-xr-x 1 root root 43044 Mar 1 2019 ln -rwxr-xr-x 1 root root 34932 Jul 27 2018 login -rwxr-xr-x 1 root root 88444 Mar 1 2019 ls -rwxr-xr-x 1 root root 67036 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 47168 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 43040 Mar 1 2019 mknod -rwxr-xr-x 1 root root 26552 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 26024 Jan 10 2019 more -rwsr-xr-x 1 root root 34268 Jan 10 2019 mount -rwxr-xr-x 1 root root 9688 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 84284 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 22416 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 26504 Mar 1 2019 readlink -rwxr-xr-x 1 root root 42968 Mar 1 2019 rm -rwxr-xr-x 1 root root 26496 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 14136 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 76012 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Sep 3 08:10 sh -> bash lrwxrwxrwx 1 root root 4 Aug 7 22:25 sh.distrib -> dash -rwxr-xr-x 1 root root 22384 Mar 1 2019 sleep -rwxr-xr-x 1 root root 51124 Mar 1 2019 stty -rwsr-xr-x 1 root root 42472 Jan 10 2019 su -rwxr-xr-x 1 root root 22392 Mar 1 2019 sync -rwxr-xr-x 1 root root 283324 Apr 24 2019 tar -rwxr-xr-x 1 root root 9808 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 63464 Mar 1 2019 touch -rwxr-xr-x 1 root root 18260 Mar 1 2019 true -rwxr-xr-x 1 root root 9636 Apr 23 2020 ulockmgr_server -rwsr-xr-x 1 root root 21976 Jan 10 2019 umount -rwxr-xr-x 1 root root 22380 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 88444 Mar 1 2019 vdir -rwxr-xr-x 1 root root 21980 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/6118/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 11), gfortran, libblas-dev, liblapack-dev, libmetis-dev, cmake, texlive-latex-extra, texlive-plain-generic, texlive-bibtex-extra, texlive-fonts-extra, ghostscript, texlive-science, texlive-xetex dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 11); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on libblas-dev; however: Package libblas-dev is not installed. pbuilder-satisfydepends-dummy depends on liblapack-dev; however: Package liblapack-dev is not installed. pbuilder-satisfydepends-dummy depends on libmetis-dev; however: Package libmetis-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-plain-generic; however: Package texlive-plain-generic is not installed. pbuilder-satisfydepends-dummy depends on texlive-bibtex-extra; however: Package texlive-bibtex-extra is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-extra; however: Package texlive-fonts-extra is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on texlive-science; however: Package texlive-science is not installed. pbuilder-satisfydepends-dummy depends on texlive-xetex; however: Package texlive-xetex is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-gfs-baskerville{a} fonts-gfs-porson{a} fonts-lmodern{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} ghostscript{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcroco3{a} libcups2{a} libcupsimage2{a} libcurl4{a} libdbus-1-3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libmetis-dev{a} libmetis5{a} libncurses6{a} libnghttp2-14{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libprocps7{a} libpsl5{a} libptexenc1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mime-support{a} po-debconf{a} poppler-data{a} preview-latex-style{a} procps{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} teckit{a} tex-common{a} texlive-base{a} texlive-bibtex-extra{a} texlive-binaries{a} texlive-fonts-extra{a} texlive-fonts-recommended{a} texlive-lang-greek{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} texlive-plain-generic{a} texlive-science{a} texlive-xetex{a} tipa{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl dbus fonts-adf-accanthis fonts-adf-berenis fonts-adf-gillius fonts-adf-universalis fonts-cabin fonts-comfortaa fonts-croscore fonts-crosextra-caladea fonts-crosextra-carlito fonts-dejavu-extra fonts-droid-fallback fonts-ebgaramond fonts-ebgaramond-extra fonts-font-awesome fonts-freefont-otf fonts-freefont-ttf fonts-gfs-artemisia fonts-gfs-complutum fonts-gfs-didot fonts-gfs-neohellenic fonts-gfs-olga fonts-gfs-solomos fonts-go fonts-junicode fonts-lato fonts-linuxlibertine fonts-lobstertwo fonts-noto-hinted fonts-noto-mono fonts-oflb-asana-math fonts-open-sans fonts-roboto-unhinted fonts-sil-gentium fonts-sil-gentium-basic fonts-sil-gentiumplus fonts-sil-gentiumplus-compact fonts-stix gsfonts krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx psmisc publicsuffix ruby shared-mime-info tex-gyre texlive-fonts-extra-links tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 164 newly installed, 0 to remove and 0 not upgraded. Need to get 733 MB of archives. After unpacking 1890 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main armhf libbsd0 armhf 0.9.1-2+deb10u1 [104 kB] Get: 2 http://deb.debian.org/debian buster/main armhf bsdmainutils armhf 11.1.2+b1 [186 kB] Get: 3 http://deb.debian.org/debian buster/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB] Get: 4 http://deb.debian.org/debian buster/main armhf groff-base armhf 1.22.4-3+deb10u1 [828 kB] Get: 5 http://deb.debian.org/debian buster/main armhf libpipeline1 armhf 1.5.1-2 [26.8 kB] Get: 6 http://deb.debian.org/debian buster/main armhf man-db armhf 2.8.5-2 [1240 kB] Get: 7 http://deb.debian.org/debian buster/main armhf libpython2.7-minimal armhf 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main armhf python2.7-minimal armhf 2.7.16-2+deb10u1 [1171 kB] Get: 9 http://deb.debian.org/debian buster/main armhf python2-minimal armhf 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main armhf python-minimal armhf 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main armhf libssl1.1 armhf 1.1.1d-0+deb10u6 [1299 kB] Get: 12 http://deb.debian.org/debian buster/main armhf mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main armhf libexpat1 armhf 2.2.6-2+deb10u1 [78.0 kB] Get: 14 http://deb.debian.org/debian buster/main armhf readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main armhf libreadline7 armhf 7.0-5 [131 kB] Get: 16 http://deb.debian.org/debian buster/main armhf libpython2.7-stdlib armhf 2.7.16-2+deb10u1 [1837 kB] Get: 17 http://deb.debian.org/debian buster/main armhf python2.7 armhf 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main armhf libpython2-stdlib armhf 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main armhf libpython-stdlib armhf 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main armhf python2 armhf 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main armhf python armhf 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main armhf poppler-data all 0.4.9-2 [1473 kB] Get: 23 http://deb.debian.org/debian buster/main armhf sensible-utils all 0.0.12 [15.8 kB] Get: 24 http://deb.debian.org/debian buster/main armhf ucf all 3.0038+nmu1 [69.0 kB] Get: 25 http://deb.debian.org/debian buster/main armhf tex-common all 6.11 [53.1 kB] Get: 26 http://deb.debian.org/debian buster/main armhf libncurses6 armhf 6.1+20181013-2+deb10u2 [79.8 kB] Get: 27 http://deb.debian.org/debian buster/main armhf libprocps7 armhf 2:3.3.15-2 [58.7 kB] Get: 28 http://deb.debian.org/debian buster/main armhf lsb-base all 10.2019051400 [28.4 kB] Get: 29 http://deb.debian.org/debian buster/main armhf procps armhf 2:3.3.15-2 [248 kB] Get: 30 http://deb.debian.org/debian buster/main armhf libmagic-mgc armhf 1:5.35-4+deb10u2 [242 kB] Get: 31 http://deb.debian.org/debian buster/main armhf libmagic1 armhf 1:5.35-4+deb10u2 [110 kB] Get: 32 http://deb.debian.org/debian buster/main armhf file armhf 1:5.35-4+deb10u2 [65.6 kB] Get: 33 http://deb.debian.org/debian buster/main armhf gettext-base armhf 0.19.8.1-9 [118 kB] Get: 34 http://deb.debian.org/debian buster/main armhf libsigsegv2 armhf 2.12-2 [32.1 kB] Get: 35 http://deb.debian.org/debian buster/main armhf m4 armhf 1.4.18-2 [190 kB] Get: 36 http://deb.debian.org/debian buster/main armhf autoconf all 2.69-11 [341 kB] Get: 37 http://deb.debian.org/debian buster/main armhf autotools-dev all 20180224.1 [77.0 kB] Get: 38 http://deb.debian.org/debian buster/main armhf automake all 1:1.16.1-4 [771 kB] Get: 39 http://deb.debian.org/debian buster/main armhf autopoint all 0.19.8.1-9 [434 kB] Get: 40 http://deb.debian.org/debian buster/main armhf cmake-data all 3.13.4-1 [1476 kB] Get: 41 http://deb.debian.org/debian buster/main armhf libicu63 armhf 63.1-6+deb10u1 [8005 kB] Get: 42 http://deb.debian.org/debian buster/main armhf libxml2 armhf 2.9.4+dfsg1-7+deb10u2 [597 kB] Get: 43 http://deb.debian.org/debian buster/main armhf libarchive13 armhf 3.3.3-4+deb10u1 [277 kB] Get: 44 http://deb.debian.org/debian buster/main armhf libkeyutils1 armhf 1.6-6 [13.9 kB] Get: 45 http://deb.debian.org/debian buster/main armhf libkrb5support0 armhf 1.17-3+deb10u1 [62.3 kB] Get: 46 http://deb.debian.org/debian buster/main armhf libk5crypto3 armhf 1.17-3+deb10u1 [119 kB] Get: 47 http://deb.debian.org/debian buster/main armhf libkrb5-3 armhf 1.17-3+deb10u1 [323 kB] Get: 48 http://deb.debian.org/debian buster/main armhf libgssapi-krb5-2 armhf 1.17-3+deb10u1 [137 kB] Get: 49 http://deb.debian.org/debian buster/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-1+deb10u1 [67.4 kB] Get: 50 http://deb.debian.org/debian buster/main armhf libsasl2-2 armhf 2.1.27+dfsg-1+deb10u1 [98.9 kB] Get: 51 http://deb.debian.org/debian buster/main armhf libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 52 http://deb.debian.org/debian buster/main armhf libldap-2.4-2 armhf 2.4.47+dfsg-3+deb10u6 [202 kB] Get: 53 http://deb.debian.org/debian buster/main armhf libnghttp2-14 armhf 1.36.0-2+deb10u1 [74.4 kB] Get: 54 http://deb.debian.org/debian buster/main armhf libpsl5 armhf 0.20.2-2 [52.4 kB] Get: 55 http://deb.debian.org/debian buster/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.9 kB] Get: 56 http://deb.debian.org/debian buster/main armhf libssh2-1 armhf 1.8.0-2.1 [129 kB] Get: 57 http://deb.debian.org/debian buster/main armhf libcurl4 armhf 7.64.0-4+deb10u2 [298 kB] Get: 58 http://deb.debian.org/debian buster/main armhf libjsoncpp1 armhf 1.7.4-3 [67.8 kB] Get: 59 http://deb.debian.org/debian buster/main armhf librhash0 armhf 1.3.8-1 [134 kB] Get: 60 http://deb.debian.org/debian buster/main armhf libuv1 armhf 1.24.1-1 [98.0 kB] Get: 61 http://deb.debian.org/debian buster/main armhf cmake armhf 3.13.4-1 [2848 kB] Get: 62 http://deb.debian.org/debian buster/main armhf libtool all 2.4.6-9 [547 kB] Get: 63 http://deb.debian.org/debian buster/main armhf dh-autoreconf all 19 [16.9 kB] Get: 64 http://deb.debian.org/debian buster/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 65 http://deb.debian.org/debian buster/main armhf libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 66 http://deb.debian.org/debian buster/main armhf dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 67 http://deb.debian.org/debian buster/main armhf libelf1 armhf 0.176-1.1 [158 kB] Get: 68 http://deb.debian.org/debian buster/main armhf dwz armhf 0.12-3 [72.0 kB] Get: 69 http://deb.debian.org/debian buster/main armhf libglib2.0-0 armhf 2.58.3-2+deb10u3 [1102 kB] Get: 70 http://deb.debian.org/debian buster/main armhf libcroco3 armhf 0.6.12-3 [133 kB] Get: 71 http://deb.debian.org/debian buster/main armhf gettext armhf 0.19.8.1-9 [1242 kB] Get: 72 http://deb.debian.org/debian buster/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 73 http://deb.debian.org/debian buster/main armhf po-debconf all 1.0.21 [248 kB] Get: 74 http://deb.debian.org/debian buster/main armhf debhelper all 12.1.1 [1016 kB] Get: 75 http://deb.debian.org/debian buster/main armhf fonts-dejavu-core all 2.37-1 [1068 kB] Get: 76 http://deb.debian.org/debian buster/main armhf fontconfig-config all 2.13.1-2 [280 kB] Get: 77 http://deb.debian.org/debian buster/main armhf fonts-gfs-baskerville all 1.1-5 [43.4 kB] Get: 78 http://deb.debian.org/debian buster/main armhf fonts-gfs-porson all 1.1-6 [33.5 kB] Get: 79 http://deb.debian.org/debian buster/main armhf fonts-lmodern all 2.004.5-6 [4539 kB] Get: 80 http://deb.debian.org/debian buster/main armhf libgfortran5 armhf 8.3.0-6 [213 kB] Get: 81 http://deb.debian.org/debian buster/main armhf libgfortran-8-dev armhf 8.3.0-6 [260 kB] Get: 82 http://deb.debian.org/debian buster/main armhf gfortran-8 armhf 8.3.0-6 [7219 kB] Get: 83 http://deb.debian.org/debian buster/main armhf gfortran armhf 4:8.3.0-1 [1424 B] Get: 84 http://deb.debian.org/debian buster/main armhf libgs9-common all 9.27~dfsg-2+deb10u4 [5136 kB] Get: 85 http://deb.debian.org/debian buster/main armhf libavahi-common-data armhf 0.7-4+deb10u1 [122 kB] Get: 86 http://deb.debian.org/debian buster/main armhf libavahi-common3 armhf 0.7-4+deb10u1 [50.9 kB] Get: 87 http://deb.debian.org/debian buster/main armhf libdbus-1-3 armhf 1.12.20-0+deb10u1 [191 kB] Get: 88 http://deb.debian.org/debian buster/main armhf libavahi-client3 armhf 0.7-4+deb10u1 [54.5 kB] Get: 89 http://deb.debian.org/debian buster/main armhf libcups2 armhf 2.2.10-6+deb10u4 [291 kB] Get: 90 http://deb.debian.org/debian buster/main armhf libcupsimage2 armhf 2.2.10-6+deb10u4 [130 kB] Get: 91 http://deb.debian.org/debian buster/main armhf libpng16-16 armhf 1.6.36-6 [275 kB] Get: 92 http://deb.debian.org/debian buster/main armhf libfreetype6 armhf 2.9.1-3+deb10u2 [322 kB] Get: 93 http://deb.debian.org/debian buster/main armhf libfontconfig1 armhf 2.13.1-2 [328 kB] Get: 94 http://deb.debian.org/debian buster/main armhf libidn11 armhf 1.33-2.2 [113 kB] Get: 95 http://deb.debian.org/debian buster/main armhf libijs-0.35 armhf 0.35-14 [16.7 kB] Get: 96 http://deb.debian.org/debian buster/main armhf libjbig2dec0 armhf 0.16-1 [54.5 kB] Get: 97 http://deb.debian.org/debian buster/main armhf libjpeg62-turbo armhf 1:1.5.2-2+deb10u1 [113 kB] Get: 98 http://deb.debian.org/debian buster/main armhf liblcms2-2 armhf 2.9-3 [119 kB] Get: 99 http://deb.debian.org/debian buster/main armhf libopenjp2-7 armhf 2.3.0-2+deb10u2 [143 kB] Get: 100 http://deb.debian.org/debian buster/main armhf libpaper1 armhf 1.1.28 [20.5 kB] Get: 101 http://deb.debian.org/debian buster/main armhf libjbig0 armhf 2.1-3.1+b2 [28.4 kB] Get: 102 http://deb.debian.org/debian buster/main armhf libwebp6 armhf 0.6.1-2+deb10u1 [229 kB] Get: 103 http://deb.debian.org/debian buster/main armhf libtiff5 armhf 4.1.0+git191117-2~deb10u2 [252 kB] Get: 104 http://deb.debian.org/debian buster/main armhf libgs9 armhf 9.27~dfsg-2+deb10u4 [1900 kB] Get: 105 http://deb.debian.org/debian buster/main armhf ghostscript armhf 9.27~dfsg-2+deb10u4 [94.6 kB] Get: 106 http://deb.debian.org/debian buster/main armhf libblas3 armhf 3.8.0-2 [109 kB] Get: 107 http://deb.debian.org/debian buster/main armhf libblas-dev armhf 3.8.0-2 [117 kB] Get: 108 http://deb.debian.org/debian buster/main armhf libbrotli1 armhf 1.0.7-2+deb10u1 [260 kB] Get: 109 http://deb.debian.org/debian buster/main armhf libpixman-1-0 armhf 0.36.0-1 [465 kB] Get: 110 http://deb.debian.org/debian buster/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB] Get: 111 http://deb.debian.org/debian buster/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 112 http://deb.debian.org/debian buster/main armhf libxcb1 armhf 1.13.1-2 [132 kB] Get: 113 http://deb.debian.org/debian buster/main armhf libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 114 http://deb.debian.org/debian buster/main armhf libx11-6 armhf 2:1.6.7-1+deb10u2 [698 kB] Get: 115 http://deb.debian.org/debian buster/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB] Get: 116 http://deb.debian.org/debian buster/main armhf libxcb-shm0 armhf 1.13.1-2 [99.0 kB] Get: 117 http://deb.debian.org/debian buster/main armhf libxext6 armhf 2:1.3.3-1+b2 [48.1 kB] Get: 118 http://deb.debian.org/debian buster/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 119 http://deb.debian.org/debian buster/main armhf libcairo2 armhf 1.16.0-4+deb10u1 [615 kB] Get: 120 http://deb.debian.org/debian buster/main armhf libgraphite2-3 armhf 1.3.13-7 [70.3 kB] Get: 121 http://deb.debian.org/debian buster/main armhf libharfbuzz0b armhf 2.3.1-1 [1151 kB] Get: 122 http://deb.debian.org/debian buster/main armhf libharfbuzz-icu0 armhf 2.3.1-1 [833 kB] Get: 123 http://deb.debian.org/debian buster/main armhf x11-common all 1:7.7+19 [251 kB] Get: 124 http://deb.debian.org/debian buster/main armhf libice6 armhf 2:1.0.9-2 [51.7 kB] Get: 125 http://deb.debian.org/debian buster/main armhf libkpathsea6 armhf 2018.20181218.49446-1 [157 kB] Get: 126 http://deb.debian.org/debian buster/main armhf liblapack3 armhf 3.8.0-2 [1631 kB] Get: 127 http://deb.debian.org/debian buster/main armhf liblapack-dev armhf 3.8.0-2 [1680 kB] Get: 128 http://deb.debian.org/debian buster/main armhf libmetis5 armhf 5.1.0.dfsg-5+b2 [136 kB] Get: 129 http://deb.debian.org/debian buster/main armhf libmetis-dev armhf 5.1.0.dfsg-5+b2 [10.8 kB] Get: 130 http://deb.debian.org/debian buster/main armhf libpaper-utils armhf 1.1.28 [17.6 kB] Get: 131 http://deb.debian.org/debian buster/main armhf libpotrace0 armhf 1.15-1 [23.9 kB] Get: 132 http://deb.debian.org/debian buster/main armhf libptexenc1 armhf 2018.20181218.49446-1 [58.1 kB] Get: 133 http://deb.debian.org/debian buster/main armhf libsm6 armhf 2:1.2.3-1 [33.0 kB] Get: 134 http://deb.debian.org/debian buster/main armhf libsynctex2 armhf 2018.20181218.49446-1 [67.4 kB] Get: 135 http://deb.debian.org/debian buster/main armhf libteckit0 armhf 2.5.8+ds2-5 [246 kB] Get: 136 http://deb.debian.org/debian buster/main armhf libtexlua52 armhf 2018.20181218.49446-1 [86.7 kB] Get: 137 http://deb.debian.org/debian buster/main armhf libtexlua53 armhf 2018.20181218.49446-1 [97.8 kB] Get: 138 http://deb.debian.org/debian buster/main armhf libtexluajit2 armhf 2018.20181218.49446-1 [201 kB] Get: 139 http://deb.debian.org/debian buster/main armhf libwoff1 armhf 1.0.2-1 [35.8 kB] Get: 140 http://deb.debian.org/debian buster/main armhf libxt6 armhf 1:1.1.5-1+b3 [159 kB] Get: 141 http://deb.debian.org/debian buster/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.7 kB] Get: 142 http://deb.debian.org/debian buster/main armhf libxpm4 armhf 1:3.5.12-1 [44.0 kB] Get: 143 http://deb.debian.org/debian buster/main armhf libxaw7 armhf 2:1.0.13-1+b2 [167 kB] Get: 144 http://deb.debian.org/debian buster/main armhf libxi6 armhf 2:1.7.9-1 [78.4 kB] Get: 145 http://deb.debian.org/debian buster/main armhf libxxhash0 armhf 0.6.5-2 [10.2 kB] Get: 146 http://deb.debian.org/debian buster/main armhf libzzip-0-13 armhf 0.13.62-3.2 [51.6 kB] Get: 147 http://deb.debian.org/debian buster/main armhf preview-latex-style all 11.91-2 [201 kB] Get: 148 http://deb.debian.org/debian buster/main armhf t1utils armhf 1.41-3 [54.4 kB] Get: 149 http://deb.debian.org/debian buster/main armhf teckit armhf 2.5.8+ds2-5 [685 kB] Get: 150 http://deb.debian.org/debian buster/main armhf texlive-binaries armhf 2018.20181218.49446-1 [8656 kB] Get: 151 http://deb.debian.org/debian buster/main armhf xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 152 http://deb.debian.org/debian buster/main armhf texlive-base all 2018.20190227-2 [19.7 MB] Get: 153 http://deb.debian.org/debian buster/main armhf texlive-latex-base all 2018.20190227-2 [984 kB] Get: 154 http://deb.debian.org/debian buster/main armhf texlive-bibtex-extra all 2018.20190227-2 [61.7 MB] Get: 155 http://deb.debian.org/debian buster/main armhf texlive-fonts-extra all 2018.20190227-2 [412 MB] Get: 156 http://deb.debian.org/debian buster/main armhf texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 157 http://deb.debian.org/debian buster/main armhf texlive-lang-greek all 2018.20190227-2 [76.3 MB] Get: 158 http://deb.debian.org/debian buster/main armhf texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 159 http://deb.debian.org/debian buster/main armhf texlive-pictures all 2018.20190227-2 [8201 kB] Get: 160 http://deb.debian.org/debian buster/main armhf texlive-latex-extra all 2018.20190227-2 [12.3 MB] Get: 161 http://deb.debian.org/debian buster/main armhf texlive-plain-generic all 2018.20190227-2 [24.3 MB] Get: 162 http://deb.debian.org/debian buster/main armhf texlive-science all 2018.20190227-2 [3168 kB] Get: 163 http://deb.debian.org/debian buster/main armhf tipa all 2:1.3-20 [2972 kB] Get: 164 http://deb.debian.org/debian buster/main armhf texlive-xetex all 2018.20190227-2 [14.8 MB] Fetched 733 MB in 1min 48s (6764 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 18932 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_armhf.deb ... Unpacking libbsd0:armhf (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_armhf.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../02-libuchardet0_0.0.6-3_armhf.deb ... Unpacking libuchardet0:armhf (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_armhf.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../04-libpipeline1_1.5.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_armhf.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:armhf. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_armhf.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_armhf.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u6_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1d-0+deb10u6) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_armhf.deb ... Unpacking libexpat1:armhf (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:armhf. Preparing to unpack .../14-libreadline7_7.0-5_armhf.deb ... Unpacking libreadline7:armhf (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:armhf. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_armhf.deb ... Unpacking libpython2.7-stdlib:armhf (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_armhf.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:armhf. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython2-stdlib:armhf (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:armhf. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_armhf.deb ... Unpacking libpython-stdlib:armhf (2.7.16-1) ... Setting up libpython2.7-minimal:armhf (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20397 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_armhf.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20430 files and directories currently installed.) Preparing to unpack .../000-python_2.7.16-1_armhf.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package poppler-data. Preparing to unpack .../001-poppler-data_0.4.9-2_all.deb ... Unpacking poppler-data (0.4.9-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../003-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../004-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libncurses6:armhf. Preparing to unpack .../005-libncurses6_6.1+20181013-2+deb10u2_armhf.deb ... Unpacking libncurses6:armhf (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:armhf. Preparing to unpack .../006-libprocps7_2%3a3.3.15-2_armhf.deb ... Unpacking libprocps7:armhf (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../007-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../008-procps_2%3a3.3.15-2_armhf.deb ... Unpacking procps (2:3.3.15-2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package hostname: Name or service not known I: Running cd /build/suitesparse-5.4.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../suitesparse_5.4.0+dfsg-1_source.changes dpkg-buildpackage: info: source package suitesparse dpkg-buildpackage: info: source version 1:5.4.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sébastien Villemot dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/suitesparse-5.4.0+dfsg' make purge make[2]: Entering directory '/build/suitesparse-5.4.0+dfsg' ( cd SuiteSparse_config && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_config' ( cd xerbla ; make clean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_config/xerbla' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_config/xerbla' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot ( cd xerbla ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_config/xerbla' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_config/xerbla' rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_config' ( cd metis-5.1.0 && make distclean ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/metis-5.1.0' rm -rf build/Linux-aarch64 make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/metis-5.1.0' ( cd AMD && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/AMD' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/AMD/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/AMD/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/AMD/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f amd_demo my_amd_demo.out rm -f amd_l_demo my_amd_l_demo.out rm -f amd_demo2 my_amd_demo2.out rm -f amd_simple my_amd_simple.out rm -f amd_f77demo my_amd_f77demo.out rm -f amd_f77simple my_amd_f77simple.out rm -f amd_f77cross my_amd_f77cross.out rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/AMD/Demo' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot ; rm -f *.mex* ) ( cd Doc ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/AMD/Doc' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/AMD/Doc' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/AMD' ( cd GraphBLAS && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS' rm -rf build/* Demo/*_demo.out Demo/complex_demo_out.m Tcov/log.txt rm -rf Config/*.tmp Source/control.m4 ( cd Test ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Test' rm -f *.o *.obj rm -f *.mex* errlog.txt spok/*.mex* log.txt fprint.txt make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Test' ( cd Tcov ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Tcov' rm -f *.o *.obj rm -f *.mex* rm -f tmp*/* errlog.txt gbstat.mat fprint.txt make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Tcov' ( cd Doc ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Doc' rm -f -r *.out *.aux *.log *.bbl *.blg *.toc make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Doc' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS' ( cd Mongoose && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose' make -C build purge make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' make[4]: *** No rule to make target 'purge'. Stop. make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' make[3]: [Makefile:50: distclean] Error 2 (ignored) rm -rf build/* Lib/* MATLAB/*.mex* rm -rf SuiteSparse_config/*.o SuiteSparse_config/*.a make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose' ( cd CAMD && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/CAMD' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CAMD/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CAMD/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CAMD/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f camd_demo my_camd_demo.out rm -f camd_l_demo my_camd_l_demo.out rm -f camd_demo2 my_camd_demo2.out rm -f camd_simple my_camd_simple.out rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CAMD/Demo' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot ; rm -f *.mex* ) ( cd Doc ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CAMD/Doc' rm -f -r camd_temp *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CAMD/Doc' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CAMD' ( cd COLAMD && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/COLAMD' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/COLAMD/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/COLAMD/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/COLAMD/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f colamd_example colamd_l_example rm -f my_colamd_example.out my_colamd_l_example.out rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/COLAMD/Demo' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot ; rm -f *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/COLAMD' ( cd BTF && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/BTF' ( cd Lib ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/BTF/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/BTF/Lib' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot ; rm -f *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/BTF' ( cd KLU && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/KLU' ( cd Demo ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/KLU/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f kludemo kluldemo klu_simple rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/KLU/Demo' ( cd Lib ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/KLU/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/KLU/Lib' ( cd Tcov ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/KLU/Tcov' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f klutest klultest *.out cov_*.c rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/KLU/Tcov' ( cd User ; make distclean ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/KLU/User' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/KLU/User' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rename.h *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/KLU' ( cd LDL && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/LDL' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/LDL/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/LDL/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/LDL/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f ldlmain ldllmain ldlsimple ldllsimple ldlamd ldllamd rm -f my_ldlmain.out my_ldlamd.out my_ldlsimple.out my_ldllamd.out rm -f my_ldllsimple.out my_ldllmain.out rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/LDL/Demo' ( cd Doc ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/LDL/Doc' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/LDL/Doc' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/LDL' ( cd CCOLAMD && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/CCOLAMD' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CCOLAMD/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CCOLAMD/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CCOLAMD/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f ccolamd_example ccolamd_l_example rm -f my_ccolamd_example.out my_ccolamd_l_example.out rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CCOLAMD/Demo' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot ; rm -f *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CCOLAMD' ( cd UMFPACK && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/UMFPACK' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f umfpack_simple a.out rm -f umfpack_di_demo my_umfpack_di_demo.out rm -f umfpack_dl_demo my_umfpack_dl_demo.out rm -f umfpack_zi_demo my_umfpack_zi_demo.out rm -f umfpack_zl_demo my_umfpack_zl_demo.out rm -f umf4hb umf4zhb *.umf my_umf4hb.out rm -f umf4hb64 my_umf4hb64.out my_umf4zhb.out rm -f umf4 readhb readhb_nozeros readhb_size tmp/* rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Demo' ( cd Doc ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Doc' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f UMFPACK_UserGuide.tex rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Doc' ( cd Tcov ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Tcov' rm -f -r /tmp/UMFPACK_TCOV_TMP rm -f -r cover.out covall_err.out make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/Tcov' ( cd MATLAB ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/MATLAB' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f luflop.mex* umfpack.mex* rename.h GKlib_util.c GKlib_graph.c rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/UMFPACK/MATLAB' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/UMFPACK' ( cd CHOLMOD && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD' ( cd Tcov ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Tcov' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f cm cl cmread clread *.c.gcov *.out /tmp/CHOLMOD_TCOV_TMP zdemo ldemo rm -f leak zz_*.c z_*.c *.a l_*.c zl_*.c cov.sort ldemo.c zdemo.c rm -f -r cm.profile cmread.profile zdemo.profile /tmp/CHOLMOD_TCOV_TMP rm -f -r cl.profile clread.profile ldemo.profile rm -f temp*.mtx timelog.m rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Tcov' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Lib' ( cd Valgrind ; make dopurge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Valgrind' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f cm cl cmread clread *.c.gcov *.out /tmp/CHOLMOD_TCOV_TMP zdemo ldemo rm -f leak zz_*.c z_*.c *.a l_*.c zl_*.c cov.sort ldemo.c zdemo.c rm -f -r cm.profile cmread.profile zdemo.profile /tmp/CHOLMOD_TCOV_TMP rm -f -r cl.profile clread.profile ldemo.profile rm -f temp*.mtx timelog.m rm -f -r *.so* *.a *.dll *.dylib *.dSYM rm -f amdtest.c aug.c camdtest.c cctest.c cm.c cm.h cmread.c \ ctest.c huge.c leak.c lpdemo.c memory.c null2.c null.c \ raw_factor.c solve.c test_ops.c unpack.c comments.txt \ links Matrix make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Valgrind' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f cholmod_demo cholmod_l_demo readhb readhb2 reade rm -f cholmod_simple rm -f timelog.m rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Demo' ( cd Doc ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Doc' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f _temp.awk _*.tex rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD/Doc' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rename.h *.mex* GKlib_util.c GKlib_graph.c ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CHOLMOD' ( cd CSparse && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/CSparse' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CSparse/Lib' rm -f *.o rm -f *.a *.obj *.dll *.dylib *.so *.so.* make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CSparse/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CSparse/Demo' rm -f *.o rm -f -r cs_demo1 cs_demo2 cs_demo3 *.a *.dSYM *.obj *.dll make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CSparse/Demo' ( cd Tcov ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CSparse/Tcov' rm -f *.o *.bbg *.da *.gcov *.gcda *.gcno rm -f cs_demo1 cs_demo2 readhb *.out *.a cs_demo3 cstcov_test cov.sort rm -f -r cs_*.c *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CSparse/Tcov' ( cd MATLAB/CSparse ; rm -f *.o *.mex* ) ( cd MATLAB/Test ; rm -f *.o *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CSparse' ( cd CXSparse && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/CXSparse' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CXSparse/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CXSparse/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CXSparse/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f cs_demo1 cs_demo2 cs_demo3 *.a rm -f cs_di_demo1 cs_di_demo2 cs_di_demo3 rm -f cs_dl_demo1 cs_dl_demo2 cs_dl_demo3 rm -f cs_ci_demo1 cs_ci_demo2 cs_ci_demo3 rm -f cs_cl_demo1 cs_cl_demo2 cs_cl_demo3 rm -f cs_idemo cs_ldemo rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CXSparse/Demo' ( cd Tcov ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/CXSparse/Tcov' rm -f *.o *.bbg *.da *.gcov *.gcda *.gcno rm -f readhb *.out *.a cov.sort rm -f cs_demo1_di cs_demo2_di cs_demo3_di cstcov_test_di rm -f cs_demo1_dl cs_demo2_dl cs_demo3_dl cstcov_test_dl rm -f cs_demo1_ci cs_demo2_ci cs_demo3_ci cstcov_test_ci rm -f cs_demo1_cl cs_demo2_cl cs_demo3_cl cstcov_test_cl rm -f cs_idemo cs_ldemo rm -f cs_*.c rm -f cs*_di.c cs*_dl.c cs*_ci.c cs*_cl.c rm -f -r *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CXSparse/Tcov' ( cd MATLAB/CSparse ; rm -f *.o cs_cl_*.c *.mex* ) ( cd MATLAB/Test ; rm -f *.o cs_cl_*.c *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/CXSparse' ( cd RBio && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/RBio' ( cd Tcov ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/RBio/Tcov' rm -f temp*.rb rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f RBio.c SuiteSparse_config.c RBio.h SuiteSparse_config.h RBdemo gcov.out RBtest RBdemo.c rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/RBio/Tcov' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/RBio/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/RBio/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/RBio/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot temp.rb rm -f -r *.so* *.a *.dll *.dylib *.dSYM RBdemo make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/RBio/Demo' ( cd RBio ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot private/temp.rb *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/RBio' ( cd MATLAB_Tools/SuiteSparseCollection && rm -f *.mex* ) ( cd MATLAB_Tools/SSMULT && rm -f *.mex* ) ( cd SuiteSparse_GPURuntime && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_GPURuntime' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_GPURuntime/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_GPURuntime/Lib' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SuiteSparse_GPURuntime' ( cd GPUQREngine && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/GPUQREngine' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/GPUQREngine/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GPUQREngine/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/GPUQREngine/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r gpuqrengine_demo troll.m *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GPUQREngine/Demo' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GPUQREngine' ( cd SPQR && make purge ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/SPQR' ( cd Lib ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SPQR/Lib' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SPQR/Lib' ( cd Demo ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SPQR/Demo' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f qrdemo qrdemo_gpu qrdemoc qrsimple qrsimplec X.mtx rm -f R.mtx C.mtx E.txt gpu_results.txt qrdemo_gpu2 qrdemo_gpu3 rm -f *.dot pfile tfile rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SPQR/Demo' ( cd Tcov ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SPQR/Tcov' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rm -f qrtest qrtest_out.txt pfile tfile cov.out qrtest_out1.txt rm -f gpuqrengine_demo troll.m qrdemo_gpu gpu_results.txt X.mtx rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SPQR/Tcov' ( cd Doc ; make purge ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/SPQR/Doc' rm -f -r *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot *.out rm -f -r *.so* *.a *.dll *.dylib *.dSYM make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SPQR/Doc' ( cd MATLAB ; rm -f *.o *.obj *.ln *.bb *.bbg *.da *.tcov *.gcov gmon.out *.bak *.d *.gcda *.gcno *.aux *.bbl *.blg *.log *.toc *.dvi *.lof *.lot rename.h *.mex* ) make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/SPQR' rm -f MATLAB_Tools/*/*.mex* MATLAB_Tools/spok/private/*.mex* rm -f -r include/* bin/* lib/* share/* make[2]: Leaving directory '/build/suitesparse-5.4.0+dfsg' rm -rf static_lib rm -f AMD/Doc/AMD_UserGuide.pdf CAMD/Doc/CAMD_UserGuide.pdf CHOLMOD/Doc/CHOLMOD_UserGuide.pdf GraphBLAS/Doc/GraphBLAS_UserGuide.pdf KLU/Doc/KLU_UserGuide.pdf Mongoose/Doc/Mongoose_UserGuide.pdf UMFPACK/Doc/UMFPACK_QuickStart.pdf UMFPACK/Doc/UMFPACK_UserGuide.pdf LDL/Doc/ldl_userguide.pdf SPQR/Doc/spqr_user_guide.pdf make[1]: Leaving directory '/build/suitesparse-5.4.0+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/suitesparse-5.4.0+dfsg' # Docs must be rebuilt first, because the build system expect them for some libs rm -f AMD/Doc/AMD_UserGuide.pdf CAMD/Doc/CAMD_UserGuide.pdf CHOLMOD/Doc/CHOLMOD_UserGuide.pdf GraphBLAS/Doc/GraphBLAS_UserGuide.pdf KLU/Doc/KLU_UserGuide.pdf Mongoose/Doc/Mongoose_UserGuide.pdf UMFPACK/Doc/UMFPACK_QuickStart.pdf UMFPACK/Doc/UMFPACK_UserGuide.pdf LDL/Doc/ldl_userguide.pdf SPQR/Doc/spqr_user_guide.pdf make docs make[2]: Entering directory '/build/suitesparse-5.4.0+dfsg' ( cd GraphBLAS && make docs ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS' ( cd Doc ; make ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Doc' pdflatex GraphBLAS_UserGuide.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./GraphBLAS_UserGuide.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. 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With-out the [][]\OT1/cmtt/m/n/12 _$\OML/cmm/ m/it/12 T$ []\OT1/cmr/m/n/12 suf-fix, the three op-er-a-tors [][]\OT1/cmtt/m/n/ 12 GrB_LOR[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_LAND[]\OT1/cmr/m/n/12 , LaTeX Warning: Reference `type' on page 35 undefined on input line 1804. [35] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. [36] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. [37] Overfull \hbox (28.54279pt too wide) in paragraph at lines 1979--1979 []\OT1/cmr/bx/n/14.4 SuiteSparse:GraphBLAS se-lect op-er-a-tors: \OT1/cmss/m/n/ 14.4 GxB[]SelectOp LaTeX Warning: Reference `select' on page 38 undefined on input line 1990. Overfull \hbox (8.99652pt too wide) in paragraph at lines 2005--2005 [] \OT1/cmtt/m/n/10 const void *x, // value of A(i,j), or NULL if f is type-generic[] [38] LaTeX Warning: Reference `selectop' on page 39 undefined on input line 2083. [39] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. [40] Overfull \hbox (0.52374pt too wide) in paragraph at lines 2186--2206 [][] [41] LaTeX Warning: Reference `type' on page 42 undefined on input line 2251. [42] [43] Overfull \hbox (14.0537pt too wide) in paragraph at lines 2388--2392 \OT1/cmr/m/n/12 This count ex-cludes re-dun-dant Boolean op-er-a-tors (for ex-a m-ple [][]\OT1/cmtt/m/n/12 GrB_TIMES_BOOL [44] [45] Overfull \hbox (7.17633pt too wide) in paragraph at lines 2473--2473 [] \OT1/cmtt/m/n/10 GrB_BinaryOp *multiply, // returns multiply oper ator of the semiring[] [46] LaTeX Warning: Reference `hypersparse' on page 47 undefined on input line 2537. [47] Overfull \hbox (12.47293pt too wide) in paragraph at lines 2585--2589 \OT1/cmr/m/n/12 of the given type. This is anal-o-gous to MAT-LAB state-ment [] []\OT1/cmtt/m/n/12 v = sparse (n,1)[]\OT1/cmr/m/n/12 , [48] Overfull \hbox (32.7161pt too wide) in paragraph at lines 2647--2654 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sion of [][]\OT1/cmtt/m/n/12 v []\ OT1/cmr/m/n/12 do not change. In Suite-Sparse:GraphBLAS, [49] Overfull \hbox (33.82916pt too wide) in paragraph at lines 2731--2733 [][][]\OT1/cmtt/m/n/12 GxB_Vector_type []\OT1/cmr/m/n/12 re-turns the type of a vec-tor. Anal-o-gous to [][]\OT1/cmtt/m/n/12 type = class (v) [50] LaTeX Warning: Reference `matrix_build' on page 51 undefined on input line 2764 . LaTeX Warning: Reference `matrix_setElement' on page 51 undefined on input line 2795. Overfull \hbox (5.42024pt too wide) in paragraph at lines 2791--2796 \OT1/cmr/m/n/12 op-er-a-tion is ex-actly like set-ting a sin-gle en-try in an [ ][]\OT1/cmtt/m/n/12 n[]\OT1/cmr/m/n/12 -by-1 ma-trix, [][]\OT1/cmtt/m/n/12 A(i, 0) = x[]\OT1/cmr/m/n/12 , [51] LaTeX Warning: Reference `matrix_extractElement' on page 52 undefined on input line 2817. Overfull \hbox (22.40071pt too wide) in paragraph at lines 2814--2823 [][][]\OT1/cmtt/m/n/12 GrB_Vector_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a vec-tor, [][]\OT1/cmtt/m/n/12 x = v(i)[]\OT1/cmr/m/n/12 . LaTeX Warning: Reference `matrix_extractTuples' on page 52 undefined on input l ine 2850. [52] LaTeX Warning: Reference `guswork' on page 53 undefined on input line 2886. [53] [54] Overfull \hbox (7.00394pt too wide) in paragraph at lines 3025--3032 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sions of [][]\OT1/cmtt/m/n/12 A [] \OT1/cmr/m/n/12 do not change. In SuiteSparse:Graph- Overfull \hbox (15.03809pt too wide) in paragraph at lines 3049--3051 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows []\OT1/cmr/m/n/12 re-turns the num-ber of rows of a ma-trix ([][]\OT1/cmtt/m/n/12 nrow=size(A,1) [55] Overfull \hbox (39.81706pt too wide) in paragraph at lines 3069--3071 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_ncols []\OT1/cmr/m/n/12 re-turns the num-ber of columns of a ma-trix ([][]\OT1/cmtt/m/n/12 ncols=size(A,2) [56] LaTeX Warning: Reference `typecasting' on page 57 undefined on input line 3157. [57] [58] LaTeX Warning: Reference `overview' on page 59 undefined on input line 3266. [59] LaTeX Warning: Reference `compare_assign' on page 60 undefined on input line 32 83. Overfull \hbox (11.6521pt too wide) in paragraph at lines 3280--3293 [][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G xB_Matrix_type[]\OT1/cmr/m/n/12 , and of course [][]\OT1/cmtt/m/n/12 GrB_Matrix _setElement LaTeX Warning: Reference `random' on page 60 undefined on input line 3294. Overfull \hbox (21.81322pt too wide) in paragraph at lines 3315--3317 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a ma-trix [][]\OT1/cmtt/m/n/12 x=A(i,j)[]\OT1/cmr/m/n/12 . [60] Overfull \hbox (39.24196pt too wide) in paragraph at lines 3384--3393 []\OT1/cmr/m/n/12 The num-ber of tu-ples in the ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/n/12 is given by [][]\OT1/cmtt/m/n/12 GrB_Matrix_nvals(&anvals,A)[ ]\OT1/cmr/m/n/12 . [61] LaTeX Warning: Reference `guswork' on page 62 undefined on input line 3430. [62] [63] [64] [65] Overfull \hbox (4.20209pt too wide) in paragraph at lines 3583--3589 [][]\OT1/cmtt/m/n/12 desc [GrB_INP1] []\OT1/cmr/m/n/12 mod-i-fies the ma-trix p a-ram-e-ter and [][]\OT1/cmtt/m/n/12 desc [GrB_INP0] LaTeX Warning: Citation `Gustavson78' on page 66 undefined on input line 3604. LaTeX Warning: Citation `BulucGilbert08' on page 66 undefined on input line 361 6. LaTeX Warning: Citation `BulucGilbert12' on page 66 undefined on input line 361 6. Overfull \hbox (7.54486pt too wide) in paragraph at lines 3611--3620 [][][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 : a heap-based method, com -put-ing [][]\OT1/cmtt/m/n/12 C(:,j)=A*B(:,j) [66] [67] Overfull \hbox (17.0722pt too wide) in paragraph at lines 3682--3687 [][][]\OT1/cmtt/m/n/12 GrB_Descriptor_set []\OT1/cmr/m/n/12 sets a de-scrip-tor field ([][]\OT1/cmtt/m/n/12 GrB_OUTP[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G rB_MASK[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_INP0[]\OT1/cmr/m/n/12 , Overfull \hbox (6.71817pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_INP1[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 GxB_Ax B_METHOD[]\OT1/cmr/m/n/12 ) to a par-tic-u-lar value ([][]\OT1/cmtt/m/n/12 GxB_ DEFAULT[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_SCMP[]\OT1/cmr/m/n/12 , Overfull \hbox (18.71361pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_TRAN[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_REPLA CE[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_GUSTAVSON[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 G xB_AxB_DOT[]\OT1/cmr/m/n/12 ). Underfull \hbox (badness 2020) in paragraph at lines 3701--3705 [][][]\OT1/cmtt/m/n/10.95 GrB_REPLACE[]\OT1/cmr/m/n/10.95 : Af-ter com-put-ing Underfull \hbox (badness 2922) in paragraph at lines 3701--3705 []$\OT1/cmr/m/n/10.95 , the out-put \OT1/cmr/bx/n/10.95 C \OT1/cmr/m/n/10.95 is Underfull \hbox (badness 2035) in paragraph at lines 3701--3705 \OT1/cmr/m/n/10.95 cleared of all en-tries. Then Underfull \hbox (badness 4981) in paragraph at lines 3713--3717 \OT1/cmr/m/n/10.95 op-er-a-tion, while [][]\OT1/cmtt/m/n/10.95 Mask(i,j)=1 Underfull \hbox (badness 3838) in paragraph at lines 3723--3726 [][][]\OT1/cmtt/m/n/10.95 GrB_TRAN[]\OT1/cmr/m/n/10.95 : The first in-put is Underfull \hbox (badness 6252) in paragraph at lines 3741--3743 \OT1/cmr/m/n/10.95 method is used to com-pute Overfull \hbox (58.92297pt too wide) in paragraph at lines 3689--3747 [] Underfull \hbox (badness 10000) in paragraph at lines 3689--3747 [68] LaTeX Warning: Reference `options' on page 69 undefined on input line 3771. LaTeX Warning: Reference `options' on page 69 undefined on input line 3798. [69] [70] Overfull \hbox (14.24648pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 H = G ; // valid; creates a 2nd handle o f the same object[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 GrB_free (&G) ; // valid; G is freed and set to NULL; H now undefined[] [71] Overfull \hbox (0.7007pt too wide) in paragraph at lines 3889--3897 []\OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes two type-generic meth-ods, [] []\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/n/12 and LaTeX Warning: Citation `BulucGilbert08' on page 72 undefined on input line 390 3. LaTeX Warning: Citation `BulucGilbert12' on page 72 undefined on input line 390 3. Overfull \hbox (12.98712pt too wide) in paragraph at lines 3906--3911 [][][]\OT1/cmtt/m/n/12 GxB_set (GrB_Matrix A, field, value) []\OT1/cmr/m/n/12 p ro-vides hints to Suite-Sparse: Overfull \hbox (31.22649pt too wide) in paragraph at lines 3912--3918 [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , just with a generic name. Ex-cept for [][]\OT1/cmtt/m/n/12 GxB_AxB_METHOD[]\OT1/cmr/m/n/12 , Overfull \hbox (1.08037pt too wide) in paragraph at lines 3929--3931 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Matrix A, field, &value) []\OT1/cmr/m/n/12 re-trieves the cur-rent value Overfull \hbox (4.81274pt too wide) in paragraph at lines 3932--3934 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Descriptor desc, field, &value) []\OT1/cmr/ m/n/12 re-trieves the value [72] Overfull \hbox (11.60793pt too wide) in paragraph at lines 3974--3981 \OT1/cmr/m/n/12 Graph-BLAS API Spec-i-fi-ca-tion, where the breadth-first searc h [][]\OT1/cmtt/m/n/12 BFS []\OT1/cmr/m/n/12 uses [][]\OT1/cmtt/m/n/12 GrB_vxm [73] Overfull \hbox (14.33583pt too wide) in paragraph at lines 3999--4005 \OT1/cmr/m/n/12 can be com-piled with [][]\OT1/cmtt/m/n/12 -DBYCOL[]\OT1/cmr/m/ n/12 , which changes the de-fault for-mat to [][]\OT1/cmtt/m/n/12 GxB_BY_COL[]\ OT1/cmr/m/n/12 , LaTeX Warning: Citation `BulucGilbert08' on page 74 undefined on input line 401 9. LaTeX Warning: Citation `BulucGilbert12' on page 74 undefined on input line 401 9. [74] Overfull \hbox (3.22508pt too wide) in paragraph at lines 4053--4057 []\OT1/cmr/m/n/12 If a ma-trix is cur-rently hy-per-sparse, it can be con-verte d to non-hypersparse [75] Overfull \hbox (18.1564pt too wide) in paragraph at lines 4082--4087 [][]\OT1/cmtt/m/n/12 GxB_BY_COL []\OT1/cmr/m/n/12 for-mat, as de-ter-mined by t he last call to [][]\OT1/cmtt/m/n/12 GxB_set(GxB_FORMAT,...) Overfull \hbox (3.83885pt too wide) in paragraph at lines 4092--4097 \OT1/cmr/m/n/12 type of the [][]\OT1/cmtt/m/n/12 field []\OT1/cmr/m/n/12 pa-ram -e-ter for the sec-ond ar-gu-ment of [][]\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/ n/12 and [][]\OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , Overfull \hbox (8.99652pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_HYPER, // defines switch to hypersparse format (a double value)[] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_MODE, // mode passed to GrB_init (blocking or non-blocking)[] [76] [77] LaTeX Warning: Reference `sec:threads' on page 78 undefined on input line 4228. [78] Overfull \hbox (35.86514pt too wide) in paragraph at lines 4247--4252 \OT1/cmr/m/n/12 al-lelism. In this case, the [][]\OT1/cmtt/m/n/12 GxB_THREADING []\OT1/cmr/m/n/12 op-tion will re-turn ei-ther [][]\OT1/cmtt/m/n/12 GxB_THREAD _NONE [79] LaTeX Warning: Reference `descriptor_set' on page 80 undefined on input line 43 41. LaTeX Warning: Reference `desc_set' on page 80 undefined on input line 4341. Overfull \hbox (44.81151pt too wide) in paragraph at lines 4337--4342 \OT1/cmr/m/n/12 con-sis-tent with the other us-ages of this generic func-tion. Un-like [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , [80] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (s == GxB_BY_COL) printf ("all new matrices are store d by column\n") :[] Overfull \hbox (24.74638pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (mode == GrB_BLOCKING) printf ("GrB_init(GrB_BLOCKING ) was called.\n") :[] [81] LaTeX Warning: Reference `desc_get' on page 82 undefined on input line 4434. [82] [83] [84] Overfull \hbox (2.24268pt too wide) in paragraph at lines 4510--4517 \OT1/cmr/m/n/12 MATLAB uses a colon no-ta-tion to in-dex into ma-tri-ces, such as [][]\OT1/cmtt/m/n/12 C=A(2:4,3:8)[]\OT1/cmr/m/n/12 , [85] LaTeX Warning: Reference `operations' on page 86 undefined on input line 4571. Overfull \hbox (5.33707pt too wide) in paragraph at lines 4570--4573 []\OT1/cmr/m/n/12 The [][]\OT1/cmtt/m/n/12 GrB_extract[]\OT1/cmr/m/n/12 , [][]\ OT1/cmtt/m/n/12 GrB_assign[]\OT1/cmr/m/n/12 , and [][]\OT1/cmtt/m/n/12 GrB_suba ssign []\OT1/cmr/m/n/12 op-er-a-tions (de-scribed Overfull \hbox (6.98373pt too wide) in paragraph at lines 4600--4607 \OT1/cmr/m/n/12 the spe-cial value [][]\OT1/cmtt/m/n/12 ni = GxB_RANGE[]\OT1/cm r/m/n/12 . The be-gin-ning in-dex is [][]\OT1/cmtt/m/n/12 I[GxB_BEGIN] [86] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4644--4644 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i <= I [GxB_END] ; i + = I [GxB_INC])[] [87] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4690--4690 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i >= I [GxB_END] ; i - = I [GxB_INC])[] [88] [89] LaTeX Warning: Reference `fig_accummask' on page 90 undefined on input line 479 5. LaTeX Warning: Reference `mxm' on page 90 undefined on input line 4799. LaTeX Warning: Reference `accummask' on page 90 undefined on input line 4828. LaTeX Warning: Reference `accummask' on page 90 undefined on input line 4829. LaTeX Warning: Reference `accummask' on page 90 undefined on input line 4830. LaTeX Warning: Reference `vector_extractElement' on page 90 undefined on input line 4832. LaTeX Warning: Reference `matrix_build' on page 90 undefined on input line 4834 . LaTeX Warning: Reference `matrix_extractElement' on page 90 undefined on input line 4835. LaTeX Warning: Reference `matrix_extractTuples' on page 90 undefined on input l ine 4836. LaTeX Warning: Reference `mxm' on page 90 undefined on input line 4838. LaTeX Warning: Reference `vxm' on page 90 undefined on input line 4839. LaTeX Warning: Reference `mxv' on page 90 undefined on input line 4840. LaTeX Warning: Reference `eWiseMult' on page 90 undefined on input line 4842. LaTeX Warning: Reference `eWiseMult' on page 90 undefined on input line 4843. LaTeX Warning: Reference `eWiseAdd' on page 90 undefined on input line 4844. LaTeX Warning: Reference `eWiseAdd' on page 90 undefined on input line 4845. LaTeX Warning: Reference `extract_vector' on page 90 undefined on input line 48 47. LaTeX Warning: Reference `extract_matrix' on page 90 undefined on input line 48 48. LaTeX Warning: Reference `extract_column' on page 90 undefined on input line 48 49. LaTeX Warning: Reference `subassign' on page 90 undefined on input line 4851. LaTeX Warning: Reference `assign' on page 90 undefined on input line 4852. LaTeX Warning: Reference `apply' on page 90 undefined on input line 4854. LaTeX Warning: Reference `select' on page 90 undefined on input line 4856. LaTeX Warning: Reference `reduce_to_vector' on page 90 undefined on input line 4858. LaTeX Warning: Reference `reduce_matrix_to_scalar' on page 90 undefined on inpu t line 4859. LaTeX Warning: Reference `transpose' on page 90 undefined on input line 4861. LaTeX Warning: Reference `kron' on page 90 undefined on input line 4863. [90] Overfull \hbox (2.05571pt too wide) in paragraph at lines 4874--4890 [][] Underfull \hbox (badness 10000) in paragraph at lines 4874--4890 [91] [92] Overfull \hbox (4.29825pt too wide) in paragraph at lines 4959--4962 [][][]\OT1/cmtt/m/n/12 A.pattern[]\OT1/cmr/m/n/12 : a log-i-cal ma-trix hold-in g the pat-tern; [][]\OT1/cmtt/m/n/12 A.pattern(i,j)=true [93] Overfull \hbox (24.74638pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.matrix (:,:) = identity ; % the identity of th e semiring's monoid[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.class = multiply.ztype ; % the ztype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 A = cast (A.matrix, multiply.xtype) ; % the xtype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 B = cast (B.matrix, multiply.ytype) ; % the ytype of the s emiring's multiply op[] LaTeX Warning: Reference `accummask' on page 94 undefined on input line 5034. [94] Overfull \hbox (28.8088pt too wide) in paragraph at lines 5058--5067 \OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes three dif-fer-ent meth-ods for com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B[]\OT1/cmr/m/n/12 , [95] Overfull \hbox (54.12108pt too wide) in paragraph at lines 5134--5134 [] \OT1/cmtt/m/n/10 if M is present, or if A or B have a single column, or if B or A are dense:[] [96] LaTeX Warning: Reference `vxm' on page 97 undefined on input line 5164. LaTeX Warning: Reference `mxv' on page 97 undefined on input line 5164. [97] [98] LaTeX Warning: Reference `accummask' on page 99 undefined on input line 5272. LaTeX Warning: Reference `bfs' on page 99 undefined on input line 5289. Overfull \hbox (16.83702pt too wide) in paragraph at lines 5289--5293 [][]\OT1/cmtt/m/n/12 GrB_vxm []\OT1/cmr/m/n/12 in-stead of [][]\OT1/cmtt/m/n/12 GrB_mxv[]\OT1/cmr/m/n/12 , since the de-fault for-mat in Suite-Sparse:GraphBLA S LaTeX Warning: Reference `guswork' on page 99 undefined on input line 5294. [99] LaTeX Warning: Reference `accummask' on page 100 undefined on input line 5330. LaTeX Warning: Reference `guswork' on page 100 undefined on input line 5343. [100] Overfull \hbox (3.59013pt too wide) in paragraph at lines 5376--5382 \OT1/cmr/m/n/12 side the out-put ma-trix [][]\OT1/cmtt/m/n/12 C []\OT1/cmr/m/n/ 12 or vec-tor [][]\OT1/cmtt/m/n/12 w[]\OT1/cmr/m/n/12 , or for the the first ca ll to [][]\OT1/cmtt/m/n/12 GrB_mxm(C,...) LaTeX Warning: Citation `GilbertMolerSchreiber92' on page 101 undefined on inpu t line 5392. LaTeX Warning: Reference `fprint' on page 101 undefined on input line 5393. [101] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5411--5416 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 $ \OT1/cmr/m/n/12 de-note the bi-nary op-er-a-tor to be used. The com-pu-ta-tio n $[]$ [102] LaTeX Warning: Reference `accummask' on page 103 undefined on input line 5475. [103] LaTeX Warning: Reference `accummask' on page 104 undefined on input line 5532. [104] LaTeX Warning: Reference `accummask' on page 105 undefined on input line 5554. Overfull \hbox (4.8362pt too wide) in paragraph at lines 5552--5562 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 ^^H$ \OT1/cmr/m/n/12 de-note the bi-nar y op-er-a-tor to be used. The com-pu-ta-tion $[]$ [105] LaTeX Warning: Reference `accummask' on page 106 undefined on input line 5642. [106] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = A.pattern & ~B.pattern ; T.matrix (p) = cast (A.mat rix (p), add.ztype) ;[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = ~A.pattern & B.pattern ; T.matrix (p) = cast (B.mat rix (p), add.ztype) ;[] LaTeX Warning: Reference `fig_accummask' on page 107 undefined on input line 56 96. LaTeX Warning: Reference `accummask' on page 107 undefined on input line 5699. [107] LaTeX Warning: Reference `colon' on page 108 undefined on input line 5738. LaTeX Warning: Reference `accummask' on page 108 undefined on input line 5740. [108] LaTeX Warning: Reference `colon' on page 109 undefined on input line 5794. LaTeX Warning: Reference `accummask' on page 109 undefined on input line 5798. [109] Overfull \hbox (28.4599pt too wide) in paragraph at lines 5828--5835 [][][]\OT1/cmtt/m/n/12 GrB_Col_extract []\OT1/cmr/m/n/12 ex-tracts a sub-vec-to r from a ma-trix, iden-ti-cal to [][]\OT1/cmtt/m/n/12 t = A (I,j) LaTeX Warning: Reference `colon' on page 110 undefined on input line 5836. LaTeX Warning: Reference `accummask' on page 110 undefined on input line 5839. [110] LaTeX Warning: Reference `colon' on page 111 undefined on input line 5860. LaTeX Warning: Reference `assign' on page 111 undefined on input line 5865. LaTeX Warning: Reference `compare_assign' on page 111 undefined on input line 5 866. LaTeX Warning: Reference `subassign_matrix' on page 111 undefined on input line 5894. [111] Overfull \hbox (1.92638pt too wide) in paragraph at lines 5920--5920 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] Overfull \hbox (14.08577pt too wide) in paragraph at lines 5929--5940 [][] LaTeX Warning: Reference `accummask' on page 112 undefined on input line 5942. Overfull \hbox (16.61003pt too wide) in paragraph at lines 5957--5961 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, [][]\OT1/cmtt/m/n/12 GxB_Matrix _subassign[]\OT1/cmr/m/n/12 , the sub-ma-trix [][]\OT1/cmtt/m/n/12 C(I,J) [112] Overfull \hbox (11.08006pt too wide) in paragraph at lines 5978--5982 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, $[]$ is com-puted, where LaTeX Warning: Reference `accummask' on page 113 undefined on input line 5989. [113] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6042--6042 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(I ,j), unused if NULL[] Overfull \hbox (17.08905pt too wide) in paragraph at lines 6044--6052 \OT1/cmr/m/n/12 col-umn in-dex (and thus [][]\OT1/cmtt/m/n/12 nj=1[]\OT1/cmr/m/ n/12 ), and where all ma-tri-ces in [][]\OT1/cmtt/m/n/12 GxB_Matrix_subassign Overfull \hbox (1.92638pt too wide) in paragraph at lines 6079--6079 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,J), unused if NULL[] [114] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. LaTeX Warning: Reference `subassign_matrix_scalar' on page 115 undefined on inp ut line 6122. LaTeX Warning: Reference `assign_vector_scalar' on page 115 undefined on input line 6124. [115] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Overfull \hbox (1.92638pt too wide) in paragraph at lines 6148--6148 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] LaTeX Warning: Reference `subassign_matrix' on page 116 undefined on input line 6155. LaTeX Warning: Reference `matrix_setElement' on page 116 undefined on input lin e 6162. LaTeX Warning: Reference `assign_vector_scalar' on page 116 undefined on input line 6175. [116] LaTeX Warning: Reference `subassign' on page 117 undefined on input line 6194. LaTeX Warning: Reference `compare_assign' on page 117 undefined on input line 6 196. LaTeX Warning: Reference `colon' on page 117 undefined on input line 6199. LaTeX Warning: Reference `assign_matrix' on page 117 undefined on input line 62 25. [117] LaTeX Warning: Reference `accummask' on page 118 undefined on input line 6282. [118] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6313--6313 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(: ,j), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6327--6330 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [119] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6351--6351 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,:), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6365--6368 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [120] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. LaTeX Warning: Reference `assign_matrix' on page 121 undefined on input line 64 28. [121] LaTeX Warning: Reference `matrix_setElement' on page 122 undefined on input lin e 6438. [122] Overfull \hbox (6.40782pt too wide) in paragraph at lines 6501--6512 [][]\OT1/cmtt/m/n/12 assign []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 subassig n[]\OT1/cmr/m/n/12 , re-sults are not de-fined for [][]\OT1/cmtt/m/n/12 GrB_Mat rix_*assign[]\OT1/cmr/m/n/12 , [123] Overfull \hbox (10.16943pt too wide) in paragraph at lines 6552--6559 []\OT1/cmr/m/n/12 This no-ta-tion does not in-clude the de-tails of the [][]\OT 1/cmtt/m/n/12 GrB_SCMP []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 GrB_REPLACE LaTeX Warning: Reference `accummask' on page 124 undefined on input line 6583. [124] LaTeX Warning: Reference `accummask' on page 125 undefined on input line 6588. LaTeX Warning: Reference `insubmatrix' on page 125 undefined on input line 6609 . LaTeX Warning: Reference `outsubmatrix' on page 125 undefined on input line 661 0. Overfull \hbox (20.92456pt too wide) in paragraph at lines 6636--6682 [][] Underfull \hbox (badness 10000) in paragraph at lines 6636--6682 [125] [126] LaTeX Warning: Reference `outsubmatrix' on page 127 undefined on input line 668 6. LaTeX Warning: Reference `outsubmatrix' on page 127 undefined on input line 669 0. LaTeX Warning: Reference `outsubmatrix' on page 127 undefined on input line 669 5. LaTeX Warning: Reference `insubmatrix' on page 127 undefined on input line 6696 . LaTeX Warning: Reference `insubmatrix' on page 127 undefined on input line 6700 . LaTeX Warning: Reference `outsubmatrix' on page 127 undefined on input line 670 5. LaTeX Warning: Reference `outsubmatrix' on page 127 undefined on input line 670 7. [127] [128] [129] Overfull \hbox (0.92876pt too wide) in paragraph at lines 6876--6878 []\OT1/cmr/m/n/12 The fol-low-ing guide-lines should be con-sid-ered when us-in g [][]\OT1/cmtt/m/n/12 GxB_subassign[]\OT1/cmr/m/n/12 , [130] LaTeX Warning: Reference `compare_assign' on page 131 undefined on input line 6 922. LaTeX Warning: Citation `DavisHu11' on page 131 undefined on input line 6924. [131] [132] LaTeX Warning: Reference `accummask' on page 133 undefined on input line 7019. [133] LaTeX Warning: Reference `accummask' on page 134 undefined on input line 7050. [134] LaTeX Warning: Reference `accummask' on page 135 undefined on input line 7115. [135] Overfull \hbox (1.92638pt too wide) in paragraph at lines 7142--7142 []\OT1/cmtt/m/n/10 GrB_Info GxB_select // C = accum (C, o p(A,k)) or op(A',k)[] LaTeX Warning: Reference `accummask' on page 136 undefined on input line 7151. Overfull \hbox (18.40335pt too wide) in paragraph at lines 7182--7201 [][] [136] [137] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. LaTeX Warning: Reference `accummask' on page 138 undefined on input line 7257. [138] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. LaTeX Warning: Reference `accummask' on page 139 undefined on input line 7310. [139] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. LaTeX Warning: Reference `reduce_vector_to_scalar' on page 140 undefined on inp ut line 7347. [140] LaTeX Warning: Reference `accummask' on page 141 undefined on input line 7377. Overfull \hbox (9.00838pt too wide) in paragraph at lines 7372--7379 [][][]\OT1/cmtt/m/n/12 GrB_transpose []\OT1/cmr/m/n/12 trans-poses a ma-trix [] []\OT1/cmtt/m/n/12 A[]\OT1/cmr/m/n/12 , just like the ar-ray trans-pose [][]\OT 1/cmtt/m/n/12 T = A.' [141] Overfull \hbox (10.46268pt too wide) in paragraph at lines 7417--7423 []\OT1/cmr/m/n/12 Since the in-put ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/ n/12 is trans-posed by the de-scrip-tor, SuiteSparse:Graph- [142] Overfull \hbox (12.44847pt too wide) in paragraph at lines 7479--7481 [][][]\OT1/cmtt/m/n/12 GxB_kron []\OT1/cmr/m/n/12 com-putes the Kro-necker prod -uct, $[]$ where LaTeX Warning: Reference `accummask' on page 143 undefined on input line 7500. [143] Overfull \hbox (2.84326pt too wide) in paragraph at lines 7517--7524 []\OT1/cmr/m/n/12 The 9 dif-fer-ent ob-jects han-dled by Suite-Sparse:GraphBLAS are all opaque, Overfull \hbox (20.73615pt too wide) in paragraph at lines 7517--7524 [][]\OT1/cmtt/m/n/12 GrB_Matrix_extractTuples[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/ m/n/12 GrB_Matrix_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_Ma trix_type[]\OT1/cmr/m/n/12 , [144] Overfull \hbox (1.52788pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 As a re-sult, the ex-act con-tent and for-mat of what is printe d is implementation- Overfull \hbox (7.41396pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 dependent, and will change from ver-sion to ver-sion of Suite-S parse:GraphBLAS. [145] Overfull \hbox (59.93402pt too wide) in paragraph at lines 7670--7672 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Type_fprint (GrB_BOOL , "boolean type", GxB_COMPLETE, f) [146] Overfull \hbox (22.884pt too wide) in paragraph at lines 7690--7693 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_UnaryOp_fprint (GrB_L NOT, "not", GxB_COMPLETE, f) Overfull \hbox (66.10902pt too wide) in paragraph at lines 7711--7714 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_BinaryOp_fprint (GrB_ PLUS_FP64, "plus", GxB_COMPLETE, f) Overfull \hbox (35.23401pt too wide) in paragraph at lines 7732--7735 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_SelectOp_fprint (GxB_ TRIL, "tril", GxB_COMPLETE, f) [147] Overfull \hbox (35.23401pt too wide) in paragraph at lines 7753--7758 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Monoid_fprint (GxB_PL US_FP64_MONOID, "plus monoid", Overfull \hbox (22.884pt too wide) in paragraph at lines 7775--7779 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Semiring_fprint (GxB_ PLUS_TIMES_FP64, "standard", Overfull \hbox (41.40901pt too wide) in paragraph at lines 7796--7799 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Descriptor_fprint (d, "descriptor", GxB_COMPLETE, f) [148] Overfull \hbox (24.38643pt too wide) in paragraph at lines 7817--7820 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Matrix_fprint (A, "my matrix", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints Overfull \hbox (24.38643pt too wide) in paragraph at lines 7838--7841 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Vector_fprint (v, "my vector", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints [149] LaTeX Warning: Citation `GilbertMolerSchreiber92' on page 150 undefined on inpu t line 7890. LaTeX Warning: Reference `guswork' on page 150 undefined on input line 7891. [150] LaTeX Warning: Reference `user' on page 151 undefined on input line 7912. Overfull \hbox (11.36362pt too wide) in paragraph at lines 7907--7914 [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_B inaryOp_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_Monoid_new[]\OT1/cmr/m/ n/12 , and [][]\OT1/cmtt/m/n/12 GrB_Semiring_new[]\OT1/cmr/m/n/12 . LaTeX Warning: Reference `fig:complex' on page 151 undefined on input line 7934 . [151] LaTeX Warning: Reference `fig:complex' on page 152 undefined on input line 7953 . LaTeX Warning: Reference `fig:complex' on page 152 undefined on input line 8012 . Overfull \hbox (18.8768pt too wide) in paragraph at lines 8011--8017 []\OT1/cmr/m/n/12 Some user def-i-ni-tions such as the [][]\OT1/cmtt/m/n/12 sta tic inline []\OT1/cmr/m/n/12 func-tions [][]\OT1/cmtt/m/n/12 my_complex_plus [152] [153] LaTeX Warning: Reference `fig:scale' on page 154 undefined on input line 8045. LaTeX Warning: Reference `fig:complex' on page 154 undefined on input line 8107 . Overfull \hbox (42.06075pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 In ei-ther case, when the user ap-pli-ca-tion is fin-ished, it can do [][]\OT1/cmtt/m/n/12 GrB_free(My_Complex)[]\OT1/cmr/m/n/12 . Overfull \hbox (60.34145pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 This safely does noth-ing if [][]\OT1/cmtt/m/n/12 My_Complex [] \OT1/cmr/m/n/12 is de-fined at compile-time with [][]\OT1/cmtt/m/n/12 GxB_Type_ define[]\OT1/cmr/m/n/12 , Overfull \hbox (47.07416pt too wide) in paragraph at lines 8127--8137 \OT1/cmr/m/n/12 ma-trix, com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B []\OT1/cmr/m/n/ 12 via [][]\OT1/cmtt/m/n/12 GrB_mxm []\OT1/cmr/m/n/12 with the pre-compiled [][ ]\OT1/cmtt/m/n/12 My_Complex_plus_times [154] [155] LaTeX Warning: Reference `fig:complex' on page 156 undefined on input line 8152 . Overfull \hbox (20.94887pt too wide) in paragraph at lines 8151--8158 []\OT1/cmr/m/n/12 An ex-am-ple macro name con-flict oc-curs in the [][]\OT1/cmt t/m/n/12 User/Example/my_complex.m4 [156] Overfull \hbox (17.79352pt too wide) in paragraph at lines 8205--8212 \OT1/cmr/m/n/12 a type when Suite-Sparse:GraphBLAS is com-piled. In-stead of th e [][]\OT1/cmtt/m/n/12 sizeof(ctype) Overfull \hbox (42.33655pt too wide) in paragraph at lines 8205--8212 []\OT1/cmr/m/n/12 sec-ond pa-ram-e-ter of [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\O T1/cmr/m/n/12 , the sec-ond pa-ram-e-ter [][]\OT1/cmtt/m/n/12 ctype []\OT1/cmr/ m/n/12 of [][]\OT1/cmtt/m/n/12 GxB_Type_define [157] [158] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8352--8352 []\OT1/cmtt/m/n/10 GxB_Semiring_define(GrB_Semiring semiring, GrB_Monoid add, G rB_BinaryOp mult) ;[] Overfull \hbox (22.70183pt too wide) in paragraph at lines 8354--8361 \OT1/cmr/m/n/12 ram-e-ter is a [][]\OT1/cmtt/m/n/12 GrB_Monoid []\OT1/cmr/m/n/1 2 that is ei-ther pre-de-fined (such as [][]\OT1/cmtt/m/n/12 GxB_PLUS_TIMES_FP6 4[]\OT1/cmr/m/n/12 ) [159] [160] [161] [162] LaTeX Warning: Citation `Luby86' on page 163 undefined on input line 8530. Overfull \hbox (35.24629pt too wide) in paragraph at lines 8565--8565 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] [163] Overfull \hbox (12.42628pt too wide) in paragraph at lines 8615--8615 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8615--8615 [] \OT1/ cmtt/m/n/10 NULL) ;[] Overfull \hbox (0.18333pt too wide) in paragraph at lines 8618--8628 \OT1/cmr/m/n/12 col-umn [][]\OT1/cmtt/m/n/12 A(:,j) []\OT1/cmr/m/n/12 is the ad -ja-cency of node [][]\OT1/cmtt/m/n/12 j[]\OT1/cmr/m/n/12 , and the dot prod-uc t [][]\OT1/cmtt/m/n/12 prob'*A(:,j) [164] LaTeX Warning: Reference `bfs' on page 165 undefined on input line 8658. LaTeX Warning: Reference `transpose' on page 165 undefined on input line 8661. [165] [166] [167] LaTeX Warning: Citation `Davis07' on page 168 undefined on input line 8807. LaTeX Warning: Citation `Davis07' on page 168 undefined on input line 8815. LaTeX Warning: Citation `Higham' on page 168 undefined on input line 8835. LaTeX Warning: Citation `Wathen' on page 168 undefined on input line 8837. [168] [169] Overfull \hbox (24.54538pt too wide) in paragraph at lines 8884--8891 \OT1/cmr/m/n/12 ca-tion to con-struct the tu-ple list, and is al-most as fast a s us-ing [][]\OT1/cmtt/m/n/12 GrB_Matrix_build[]\OT1/cmr/m/n/12 . Overfull \hbox (3.74657pt too wide) in paragraph at lines 8919--8919 [] \OT1/cmtt/m/n/10 GrB_Matrix_setElement (F, em (krow,kcol) , krow, kcol) ;[] [170] LaTeX Warning: Reference `random' on page 171 undefined on input line 8939. [171] [172] [173] LaTeX Warning: Citation `WolfBerryStark15' on page 174 undefined on input line 9120. LaTeX Warning: Citation `Burkhardt16' on page 174 undefined on input line 9122. LaTeX Warning: Citation `AzadBulucGilbert15' on page 174 undefined on input lin e 9124. LaTeX Warning: Citation `Cohen09' on page 174 undefined on input line 9124. LaTeX Warning: Citation `WolfDeveciBerryHammondRajamanickam17' on page 174 unde fined on input line 9126. LaTeX Warning: Citation `Davis18b' on page 174 undefined on input line 9139. [174] LaTeX Warning: Reference `type_new' on page 175 undefined on input line 9151. Overfull \hbox (32.48866pt too wide) in paragraph at lines 9172--9188 [][] Underfull \hbox (badness 10000) in paragraph at lines 9172--9188 [175] Overfull \hbox (21.90607pt too wide) in paragraph at lines 9210--9210 []\OT1/cmr/bx/n/14.4 User ap-pli-ca-tions us-ing OpenMP or POSIX pthreads LaTeX Warning: Reference `sec:install' on page 176 undefined on input line 9219 . Overfull \hbox (4.40424pt too wide) in paragraph at lines 9214--9220 \OT1/cmr/m/n/12 Two ex-am-ple demo pro-grams are in-cluded that il-lus-trate ho w a multi-threaded [176] Overfull \hbox (69.41573pt too wide) in paragraph at lines 9269--9269 []\OT1/cmr/bx/n/17.28 Compiling and In-stalling Suite-Sparse:GraphBLAS [177] Overfull \hbox (5.3059pt too wide) in paragraph at lines 9322--9329 \OT1/cmr/m/n/12 pthreads. If OpenMP is present, it uses OpenMP crit-i-cal sec-t ions for [][]\OT1/cmtt/m/n/12 GrB_wait Overfull \hbox (0.44614pt too wide) in paragraph at lines 9356--9358 []\OT1/cmr/m/n/12 no user thread-ing: com-pile with [][]\OT1/cmtt/m/n/12 cmake -DUSER_NONE=1[]\OT1/cmr/m/n/12 . \OT1/cmr/bx/n/12 Graph-BLAS Overfull \hbox (9.50793pt too wide) in paragraph at lines 9373--9376 [][]\OT1/cmtt/m/n/12 GxB_BY_ROW []\OT1/cmr/m/n/12 for-mat. You can change the d e-fault at com-pile time to [][]\OT1/cmtt/m/n/12 GxB_BY_COL [178] LaTeX Warning: Reference `gxbset' on page 179 undefined on input line 9382. LaTeX Warning: Reference `gxbget' on page 179 undefined on input line 9382. Overfull \hbox (52.64896pt too wide) in paragraph at lines 9389--9389 [] \OT1/cmtt/m/n/10.95 if (s == GxB_BY_COL) printf ("all new matrices are st ored by column\n") :[] Overfull \hbox (3.09839pt too wide) in paragraph at lines 9404--9410 \OT1/cmr/m/n/12 Then do [][]\OT1/cmtt/m/n/12 make []\OT1/cmr/m/n/12 in the [][] \OT1/cmtt/m/n/12 build []\OT1/cmr/m/n/12 di-rec-tory. If this still fails, see the [][]\OT1/cmtt/m/n/12 CMakeLists.txt Overfull \hbox (0.91077pt too wide) in paragraph at lines 9427--9427 [] \OT1/cmtt/m/n/10.95 # cmake 2.8 workaround: gcc needs to be told to d o ANSI C11.[] [179] Overfull \hbox (49.52692pt too wide) in paragraph at lines 9429--9432 []\OT1/cmr/m/n/12 To com-pile Suite-Sparse:GraphBLAS with-out run-ning the de-m os, use [][]\OT1/cmtt/m/n/12 make library Overfull \hbox (5.06398pt too wide) in paragraph at lines 9433--9436 []\OT1/cmr/m/n/12 file, but these are meant only for code de-vel-op-ment of Sui te-Sparse:GraphBLAS Overfull \hbox (1.21198pt too wide) in paragraph at lines 9457--9460 \OT1/cmr/m/n/12 To in-stall the li-brary (typ-i-cally in [][]\OT1/cmtt/m/n/12 / usr/local/lib []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 /usr/local/include [180] Overfull \hbox (0.30112pt too wide) in paragraph at lines 9507--9514 \OT1/cmss/m/n/12 redislabs . com / redis-[]enterprise / technology / redisgraph /$[][]\OT1/cmr/m/n/12 ), a graph database mod- Overfull \hbox (36.16724pt too wide) in paragraph at lines 9507--9514 [][]$\OT1/cmss/m/n/10 https : / / redislabs . com / blog / new-[]redisgraph-[]1 -[]0-[]achieves-[]600x-[]faster-[]performance-[]graph-[]databases/$[][]\OT1/cmr /m/n/12 ). [181] No file GraphBLAS_UserGuide.bbl. (./GraphBLAS_UserGuide.aux) Package rerunfilecheck Warning: File `GraphBLAS_UserGuide.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb> Output written on GraphBLAS_UserGuide.pdf (181 pages, 676773 bytes). Transcript written on GraphBLAS_UserGuide.log. bibtex GraphBLAS_UserGuide This is BibTeX, Version 0.99d (TeX Live 2019/dev/Debian) The top-level auxiliary file: GraphBLAS_UserGuide.aux The style file: annotate.bst Database file #1: GraphBLAS_UserGuide.bib Warning--I'm ignoring DavisHu11's extra "note" field --line 164 of file GraphBLAS_UserGuide.bib Warning--string name "simax" is undefined --line 312 of file GraphBLAS_UserGuide.bib Warning--empty institution in spec Warning--empty journal in GilbertMolerSchreiber92 Warning--empty institution in Kepner2017 (There were 5 warnings) pdflatex GraphBLAS_UserGuide.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./GraphBLAS_UserGuide.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdframed/mdframed.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/zref-abspage.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/zref-base.sty)) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdframed/md-frame-0.mdf)) (./GraphBLAS_version.tex) (./GraphBLAS_UserGuide.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./GraphBLAS_UserGuide.out) (./GraphBLAS_UserGuide.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./GraphBLAS_UserGuide.toc [2] [3] [4] Overfull \hbox (3.4828pt too wide) in paragraph at lines 145--145 [][] [][][]\OT1/cmr/m/n/10.95 Performance of \OT1/cmss/m/n/10.95 GxB[]subassig n\OT1/cmr/m/n/10.95 , \OT1/cmss/m/n/10.95 GrB[]assign \OT1/cmr/m/n/10.95 and \O T1/cmss/m/n/10.95 GrB[]*[]setElement[][] [][] [5]) [6] LaTeX Warning: Citation `Davis18' on page 7 undefined on input line 83. LaTeX Warning: Citation `Davis18b' on page 7 undefined on input line 84. LaTeX Warning: Citation `BulucMattsonMcMillanMoreiraYang17' on page 7 undefined on input line 87. LaTeX Warning: Citation `spec' on page 7 undefined on input line 87. LaTeX Warning: Citation `Kepner2017' on page 7 undefined on input line 88. (./GraphBLAS_API_version.tex) [7] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (6.77888pt too wide) in paragraph at lines 138--142 []\OT1/cmr/m/n/12 New ex-ten-sions to Graph-BLAS in this ver-sion in-clude [][] \OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_set[]\OT1/ cmr/m/n/12 , [8] [9] LaTeX Warning: Citation `KepnerGilbert2011' on page 10 undefined on input line 237. LaTeX Warning: Citation `Davis06book' on page 10 undefined on input line 238. LaTeX Warning: Citation `DavisRajamanickamSidLakhdar16' on page 10 undefined on input line 239. Overfull \hbox (0.69284pt too wide) in paragraph at lines 235--240 []\OT1/cmr/m/it/12 Graph Al-go-rithms in the Lan-guage on Lin-ear Al-ge-bra\OT1 /cmr/m/n/12 , Kep-ner and Gilbert, [10] [11] [12] [13] [14] Overfull \hbox (8.66713pt too wide) in paragraph at lines 469--474 []\OT1/cmr/m/n/12 The Ac-cu-mu-la-tor Phase is fol-lowed by the Mask/Replace Ph ase, $[]$ Overfull \hbox (8.47243pt too wide) in paragraph at lines 545--545 [] \OT1/cmtt/m/n/10 p = C.pattern & T.pattern ; Z.matrix (p) = accum (C.mat rix (p), T.matrix (p));[] [15] [16] [17] Overfull \hbox (13.20271pt too wide) in paragraph at lines 646--649 \OT1/cmr/m/n/12 ANSI C. Yet C leaves some type-cast-ing un-de-fined. Suite-Spar se:GraphBLAS [18] [19] Overfull \hbox (19.49643pt too wide) in paragraph at lines 787--787 [] \OT1/cmtt/m/n/10 ... use features from version 1.4.0 of a specific GraphB LAS implementation[] [20] [21] Overfull \hbox (0.80347pt too wide) in paragraph at lines 914--921 \OT1/cmr/m/n/12 namely: [][]\OT1/cmtt/m/n/12 GrB_*_nvals[]\OT1/cmr/m/n/12 , [][ ]\OT1/cmtt/m/n/12 GrB_*_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_*_extractTuples[]\OT1/cmr/m/n/12 , and [22] [23] [24] Overfull \hbox (16.27414pt too wide) in paragraph at lines 1018--1029 \OT1/cmr/m/n/12 spe-cific ob-jects, [][]\OT1/cmtt/m/n/12 GrB_*_nvals[]\OT1/cmr/ m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_*_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/ cmtt/m/n/12 GrB_*_extractTuples[]\OT1/cmr/m/n/12 , [25] LaTeX Warning: Citation `spec' on page 26 undefined on input line 1097. [26] [27] [28] Overfull \hbox (3.67369pt too wide) in paragraph at lines 1183--1204 [] Overfull \hbox (5.08691pt too wide) in paragraph at lines 1215--1219 []\OT1/cmr/bx/n/12 SPEC: \OT1/cmr/m/n/12 Suite-Sparse:GraphBLAS pre-de-fines al l unique monoids and semir- [29] [30] [31] Overfull \hbox (3.28505pt too wide) in paragraph at lines 1393--1396 [][]\OT1/cmtt/m/n/12 GxB_Type_size (&s, GrB_INT32) []\OT1/cmr/m/n/12 sets [][]\ OT1/cmtt/m/n/12 s []\OT1/cmr/m/n/12 to 4, the same as [][]\OT1/cmtt/m/n/12 size of(int32_t)[]\OT1/cmr/m/n/12 . [32] [33] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1455. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1455. [34] Overfull \hbox (1.92638pt too wide) in paragraph at lines 1543--1543 []\OT1/cmtt/m/n/10 GrB_Info GrB_UnaryOp_new // create a new user-def ined unary operator[] [35] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1577. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1577. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1600. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1600. [36] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1654. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1654. Overfull \hbox (1.14636pt too wide) in paragraph at lines 1672--1703 [][] [37] [38] Overfull \hbox (10.58614pt too wide) in paragraph at lines 1781--1790 \OT1/cmr/m/n/12 XOR op-er-a-tors. With-out the [][]\OT1/cmtt/m/n/12 _$\OML/cmm/ m/it/12 T$ []\OT1/cmr/m/n/12 suf-fix, the three op-er-a-tors [][]\OT1/cmtt/m/n/ 12 GrB_LOR[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_LAND[]\OT1/cmr/m/n/12 , [39] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. [40] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. [41] Overfull \hbox (28.54279pt too wide) in paragraph at lines 1979--1979 []\OT1/cmr/bx/n/14.4 SuiteSparse:GraphBLAS se-lect op-er-a-tors: \OT1/cmss/m/n/ 14.4 GxB[]SelectOp Overfull \hbox (8.99652pt too wide) in paragraph at lines 2005--2005 [] \OT1/cmtt/m/n/10 const void *x, // value of A(i,j), or NULL if f is type-generic[] [42] [43] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. [44] Overfull \hbox (0.52374pt too wide) in paragraph at lines 2186--2206 [][] [45] [46] [47] Overfull \hbox (14.0537pt too wide) in paragraph at lines 2388--2392 \OT1/cmr/m/n/12 This count ex-cludes re-dun-dant Boolean op-er-a-tors (for ex-a m-ple [][]\OT1/cmtt/m/n/12 GrB_TIMES_BOOL [48] [49] Overfull \hbox (7.17633pt too wide) in paragraph at lines 2473--2473 [] \OT1/cmtt/m/n/10 GrB_BinaryOp *multiply, // returns multiply oper ator of the semiring[] [50] [51] Overfull \hbox (12.47293pt too wide) in paragraph at lines 2585--2589 \OT1/cmr/m/n/12 of the given type. This is anal-o-gous to MAT-LAB state-ment [] []\OT1/cmtt/m/n/12 v = sparse (n,1)[]\OT1/cmr/m/n/12 , [52] Overfull \hbox (32.7161pt too wide) in paragraph at lines 2647--2654 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sion of [][]\OT1/cmtt/m/n/12 v []\ OT1/cmr/m/n/12 do not change. In Suite-Sparse:GraphBLAS, [53] Overfull \hbox (33.82916pt too wide) in paragraph at lines 2731--2733 [][][]\OT1/cmtt/m/n/12 GxB_Vector_type []\OT1/cmr/m/n/12 re-turns the type of a vec-tor. Anal-o-gous to [][]\OT1/cmtt/m/n/12 type = class (v) [54] Overfull \hbox (5.42024pt too wide) in paragraph at lines 2791--2796 \OT1/cmr/m/n/12 op-er-a-tion is ex-actly like set-ting a sin-gle en-try in an [ ][]\OT1/cmtt/m/n/12 n[]\OT1/cmr/m/n/12 -by-1 ma-trix, [][]\OT1/cmtt/m/n/12 A(i, 0) = x[]\OT1/cmr/m/n/12 , [55] Overfull \hbox (22.40071pt too wide) in paragraph at lines 2814--2823 [][][]\OT1/cmtt/m/n/12 GrB_Vector_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a vec-tor, [][]\OT1/cmtt/m/n/12 x = v(i)[]\OT1/cmr/m/n/12 . [56] [57] [58] Overfull \hbox (7.00394pt too wide) in paragraph at lines 3025--3032 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sions of [][]\OT1/cmtt/m/n/12 A [] \OT1/cmr/m/n/12 do not change. In SuiteSparse:Graph- Overfull \hbox (15.03809pt too wide) in paragraph at lines 3049--3051 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows []\OT1/cmr/m/n/12 re-turns the num-ber of rows of a ma-trix ([][]\OT1/cmtt/m/n/12 nrow=size(A,1) [59] Overfull \hbox (39.81706pt too wide) in paragraph at lines 3069--3071 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_ncols []\OT1/cmr/m/n/12 re-turns the num-ber of columns of a ma-trix ([][]\OT1/cmtt/m/n/12 ncols=size(A,2) [60] [61] [62] [63] Overfull \hbox (11.6521pt too wide) in paragraph at lines 3280--3293 [][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G xB_Matrix_type[]\OT1/cmr/m/n/12 , and of course [][]\OT1/cmtt/m/n/12 GrB_Matrix _setElement Overfull \hbox (21.81322pt too wide) in paragraph at lines 3315--3317 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a ma-trix [][]\OT1/cmtt/m/n/12 x=A(i,j)[]\OT1/cmr/m/n/12 . [64] Overfull \hbox (39.24196pt too wide) in paragraph at lines 3384--3393 []\OT1/cmr/m/n/12 The num-ber of tu-ples in the ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/n/12 is given by [][]\OT1/cmtt/m/n/12 GrB_Matrix_nvals(&anvals,A)[ ]\OT1/cmr/m/n/12 . [65] [66] [67] [68] [69] Overfull \hbox (4.20209pt too wide) in paragraph at lines 3583--3589 [][]\OT1/cmtt/m/n/12 desc [GrB_INP1] []\OT1/cmr/m/n/12 mod-i-fies the ma-trix p a-ram-e-ter and [][]\OT1/cmtt/m/n/12 desc [GrB_INP0] LaTeX Warning: Citation `Gustavson78' on page 70 undefined on input line 3604. LaTeX Warning: Citation `BulucGilbert08' on page 70 undefined on input line 361 6. LaTeX Warning: Citation `BulucGilbert12' on page 70 undefined on input line 361 6. Overfull \hbox (7.54486pt too wide) in paragraph at lines 3611--3620 [][][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 : a heap-based method, com -put-ing [][]\OT1/cmtt/m/n/12 C(:,j)=A*B(:,j) [70] [71] Overfull \hbox (17.0722pt too wide) in paragraph at lines 3682--3687 [][][]\OT1/cmtt/m/n/12 GrB_Descriptor_set []\OT1/cmr/m/n/12 sets a de-scrip-tor field ([][]\OT1/cmtt/m/n/12 GrB_OUTP[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G rB_MASK[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_INP0[]\OT1/cmr/m/n/12 , Overfull \hbox (6.71817pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_INP1[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 GxB_Ax B_METHOD[]\OT1/cmr/m/n/12 ) to a par-tic-u-lar value ([][]\OT1/cmtt/m/n/12 GxB_ DEFAULT[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_SCMP[]\OT1/cmr/m/n/12 , Overfull \hbox (18.71361pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_TRAN[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_REPLA CE[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_GUSTAVSON[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 G xB_AxB_DOT[]\OT1/cmr/m/n/12 ). Underfull \hbox (badness 2020) in paragraph at lines 3701--3705 [][][]\OT1/cmtt/m/n/10.95 GrB_REPLACE[]\OT1/cmr/m/n/10.95 : Af-ter com-put-ing Underfull \hbox (badness 2922) in paragraph at lines 3701--3705 []$\OT1/cmr/m/n/10.95 , the out-put \OT1/cmr/bx/n/10.95 C \OT1/cmr/m/n/10.95 is Underfull \hbox (badness 2035) in paragraph at lines 3701--3705 \OT1/cmr/m/n/10.95 cleared of all en-tries. Then Underfull \hbox (badness 4981) in paragraph at lines 3713--3717 \OT1/cmr/m/n/10.95 op-er-a-tion, while [][]\OT1/cmtt/m/n/10.95 Mask(i,j)=1 Underfull \hbox (badness 3838) in paragraph at lines 3723--3726 [][][]\OT1/cmtt/m/n/10.95 GrB_TRAN[]\OT1/cmr/m/n/10.95 : The first in-put is Underfull \hbox (badness 6252) in paragraph at lines 3741--3743 \OT1/cmr/m/n/10.95 method is used to com-pute Overfull \hbox (58.92297pt too wide) in paragraph at lines 3689--3747 [] Underfull \hbox (badness 10000) in paragraph at lines 3689--3747 [72] [73] [74] Overfull \hbox (14.24648pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 H = G ; // valid; creates a 2nd handle o f the same object[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 GrB_free (&G) ; // valid; G is freed and set to NULL; H now undefined[] [75] Overfull \hbox (0.7007pt too wide) in paragraph at lines 3889--3897 []\OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes two type-generic meth-ods, [] []\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/n/12 and LaTeX Warning: Citation `BulucGilbert08' on page 76 undefined on input line 390 3. LaTeX Warning: Citation `BulucGilbert12' on page 76 undefined on input line 390 3. Overfull \hbox (12.98712pt too wide) in paragraph at lines 3906--3911 [][][]\OT1/cmtt/m/n/12 GxB_set (GrB_Matrix A, field, value) []\OT1/cmr/m/n/12 p ro-vides hints to Suite-Sparse: Overfull \hbox (31.22649pt too wide) in paragraph at lines 3912--3918 [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , just with a generic name. Ex-cept for [][]\OT1/cmtt/m/n/12 GxB_AxB_METHOD[]\OT1/cmr/m/n/12 , Overfull \hbox (1.08037pt too wide) in paragraph at lines 3929--3931 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Matrix A, field, &value) []\OT1/cmr/m/n/12 re-trieves the cur-rent value Overfull \hbox (4.81274pt too wide) in paragraph at lines 3932--3934 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Descriptor desc, field, &value) []\OT1/cmr/ m/n/12 re-trieves the value [76] Overfull \hbox (11.60793pt too wide) in paragraph at lines 3974--3981 \OT1/cmr/m/n/12 Graph-BLAS API Spec-i-fi-ca-tion, where the breadth-first searc h [][]\OT1/cmtt/m/n/12 BFS []\OT1/cmr/m/n/12 uses [][]\OT1/cmtt/m/n/12 GrB_vxm [77] Overfull \hbox (14.33583pt too wide) in paragraph at lines 3999--4005 \OT1/cmr/m/n/12 can be com-piled with [][]\OT1/cmtt/m/n/12 -DBYCOL[]\OT1/cmr/m/ n/12 , which changes the de-fault for-mat to [][]\OT1/cmtt/m/n/12 GxB_BY_COL[]\ OT1/cmr/m/n/12 , LaTeX Warning: Citation `BulucGilbert08' on page 78 undefined on input line 401 9. LaTeX Warning: Citation `BulucGilbert12' on page 78 undefined on input line 401 9. [78] Overfull \hbox (3.22508pt too wide) in paragraph at lines 4053--4057 []\OT1/cmr/m/n/12 If a ma-trix is cur-rently hy-per-sparse, it can be con-verte d to non-hypersparse [79] Overfull \hbox (18.1564pt too wide) in paragraph at lines 4082--4087 [][]\OT1/cmtt/m/n/12 GxB_BY_COL []\OT1/cmr/m/n/12 for-mat, as de-ter-mined by t he last call to [][]\OT1/cmtt/m/n/12 GxB_set(GxB_FORMAT,...) Overfull \hbox (3.83885pt too wide) in paragraph at lines 4092--4097 \OT1/cmr/m/n/12 type of the [][]\OT1/cmtt/m/n/12 field []\OT1/cmr/m/n/12 pa-ram -e-ter for the sec-ond ar-gu-ment of [][]\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/ n/12 and [][]\OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , Overfull \hbox (8.99652pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_HYPER, // defines switch to hypersparse format (a double value)[] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_MODE, // mode passed to GrB_init (blocking or non-blocking)[] [80] [81] [82] Overfull \hbox (35.86514pt too wide) in paragraph at lines 4247--4252 \OT1/cmr/m/n/12 al-lelism. In this case, the [][]\OT1/cmtt/m/n/12 GxB_THREADING []\OT1/cmr/m/n/12 op-tion will re-turn ei-ther [][]\OT1/cmtt/m/n/12 GxB_THREAD _NONE [83] Overfull \hbox (44.81151pt too wide) in paragraph at lines 4337--4342 \OT1/cmr/m/n/12 con-sis-tent with the other us-ages of this generic func-tion. Un-like [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , [84] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (s == GxB_BY_COL) printf ("all new matrices are store d by column\n") :[] Overfull \hbox (24.74638pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (mode == GrB_BLOCKING) printf ("GrB_init(GrB_BLOCKING ) was called.\n") :[] [85] [86] [87] [88] Overfull \hbox (2.24268pt too wide) in paragraph at lines 4510--4517 \OT1/cmr/m/n/12 MATLAB uses a colon no-ta-tion to in-dex into ma-tri-ces, such as [][]\OT1/cmtt/m/n/12 C=A(2:4,3:8)[]\OT1/cmr/m/n/12 , [89] Overfull \hbox (5.33707pt too wide) in paragraph at lines 4570--4573 []\OT1/cmr/m/n/12 The [][]\OT1/cmtt/m/n/12 GrB_extract[]\OT1/cmr/m/n/12 , [][]\ OT1/cmtt/m/n/12 GrB_assign[]\OT1/cmr/m/n/12 , and [][]\OT1/cmtt/m/n/12 GrB_suba ssign []\OT1/cmr/m/n/12 op-er-a-tions (de-scribed Overfull \hbox (6.98373pt too wide) in paragraph at lines 4600--4607 \OT1/cmr/m/n/12 the spe-cial value [][]\OT1/cmtt/m/n/12 ni = GxB_RANGE[]\OT1/cm r/m/n/12 . The be-gin-ning in-dex is [][]\OT1/cmtt/m/n/12 I[GxB_BEGIN] [90] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4644--4644 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i <= I [GxB_END] ; i + = I [GxB_INC])[] [91] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4690--4690 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i >= I [GxB_END] ; i - = I [GxB_INC])[] [92] [93] [94] Overfull \hbox (2.05571pt too wide) in paragraph at lines 4874--4890 [][] Underfull \hbox (badness 10000) in paragraph at lines 4874--4890 [95] [96] Overfull \hbox (4.29825pt too wide) in paragraph at lines 4959--4962 [][][]\OT1/cmtt/m/n/12 A.pattern[]\OT1/cmr/m/n/12 : a log-i-cal ma-trix hold-in g the pat-tern; [][]\OT1/cmtt/m/n/12 A.pattern(i,j)=true [97] Overfull \hbox (24.74638pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.matrix (:,:) = identity ; % the identity of th e semiring's monoid[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.class = multiply.ztype ; % the ztype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 A = cast (A.matrix, multiply.xtype) ; % the xtype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 B = cast (B.matrix, multiply.ytype) ; % the ytype of the s emiring's multiply op[] [98] Overfull \hbox (28.8088pt too wide) in paragraph at lines 5058--5067 \OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes three dif-fer-ent meth-ods for com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B[]\OT1/cmr/m/n/12 , [99] Overfull \hbox (54.12108pt too wide) in paragraph at lines 5134--5134 [] \OT1/cmtt/m/n/10 if M is present, or if A or B have a single column, or if B or A are dense:[] [100] [101] [102] Overfull \hbox (16.83702pt too wide) in paragraph at lines 5289--5293 [][]\OT1/cmtt/m/n/12 GrB_vxm []\OT1/cmr/m/n/12 in-stead of [][]\OT1/cmtt/m/n/12 GrB_mxv[]\OT1/cmr/m/n/12 , since the de-fault for-mat in Suite-Sparse:GraphBLA S [103] [104] Overfull \hbox (3.59013pt too wide) in paragraph at lines 5376--5382 \OT1/cmr/m/n/12 side the out-put ma-trix [][]\OT1/cmtt/m/n/12 C []\OT1/cmr/m/n/ 12 or vec-tor [][]\OT1/cmtt/m/n/12 w[]\OT1/cmr/m/n/12 , or for the the first ca ll to [][]\OT1/cmtt/m/n/12 GrB_mxm(C,...) LaTeX Warning: Citation `GilbertMolerSchreiber92' on page 105 undefined on inpu t line 5392. [105] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5411--5416 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 $ \OT1/cmr/m/n/12 de-note the bi-nary op-er-a-tor to be used. The com-pu-ta-tio n $[]$ [106] [107] [108] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5552--5562 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 ^^H$ \OT1/cmr/m/n/12 de-note the bi-nar y op-er-a-tor to be used. The com-pu-ta-tion $[]$ [109] [110] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = A.pattern & ~B.pattern ; T.matrix (p) = cast (A.mat rix (p), add.ztype) ;[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = ~A.pattern & B.pattern ; T.matrix (p) = cast (B.mat rix (p), add.ztype) ;[] [111] [112] [113] Overfull \hbox (28.4599pt too wide) in paragraph at lines 5828--5835 [][][]\OT1/cmtt/m/n/12 GrB_Col_extract []\OT1/cmr/m/n/12 ex-tracts a sub-vec-to r from a ma-trix, iden-ti-cal to [][]\OT1/cmtt/m/n/12 t = A (I,j) [114] [115] Overfull \hbox (1.92638pt too wide) in paragraph at lines 5920--5920 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] Overfull \hbox (14.08577pt too wide) in paragraph at lines 5929--5940 [][] Overfull \hbox (16.61003pt too wide) in paragraph at lines 5957--5961 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, [][]\OT1/cmtt/m/n/12 GxB_Matrix _subassign[]\OT1/cmr/m/n/12 , the sub-ma-trix [][]\OT1/cmtt/m/n/12 C(I,J) [116] Overfull \hbox (11.08006pt too wide) in paragraph at lines 5978--5982 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, $[]$ is com-puted, where [117] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6042--6042 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(I ,j), unused if NULL[] Overfull \hbox (17.08905pt too wide) in paragraph at lines 6044--6052 \OT1/cmr/m/n/12 col-umn in-dex (and thus [][]\OT1/cmtt/m/n/12 nj=1[]\OT1/cmr/m/ n/12 ), and where all ma-tri-ces in [][]\OT1/cmtt/m/n/12 GxB_Matrix_subassign Overfull \hbox (1.92638pt too wide) in paragraph at lines 6079--6079 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,J), unused if NULL[] [118] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. [119] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Overfull \hbox (1.92638pt too wide) in paragraph at lines 6148--6148 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] [120] [121] [122] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6313--6313 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(: ,j), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6327--6330 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [123] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6351--6351 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,:), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6365--6368 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [124] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. [125] [126] Overfull \hbox (6.40782pt too wide) in paragraph at lines 6501--6512 [][]\OT1/cmtt/m/n/12 assign []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 subassig n[]\OT1/cmr/m/n/12 , re-sults are not de-fined for [][]\OT1/cmtt/m/n/12 GrB_Mat rix_*assign[]\OT1/cmr/m/n/12 , [127] Overfull \hbox (10.16943pt too wide) in paragraph at lines 6552--6559 []\OT1/cmr/m/n/12 This no-ta-tion does not in-clude the de-tails of the [][]\OT 1/cmtt/m/n/12 GrB_SCMP []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 GrB_REPLACE [128] Overfull \hbox (20.92456pt too wide) in paragraph at lines 6636--6682 [][] Underfull \hbox (badness 10000) in paragraph at lines 6636--6682 [129] [130] [131] [132] [133] Overfull \hbox (0.92876pt too wide) in paragraph at lines 6876--6878 []\OT1/cmr/m/n/12 The fol-low-ing guide-lines should be con-sid-ered when us-in g [][]\OT1/cmtt/m/n/12 GxB_subassign[]\OT1/cmr/m/n/12 , [134] LaTeX Warning: Citation `DavisHu11' on page 135 undefined on input line 6924. [135] [136] [137] [138] [139] Overfull \hbox (1.92638pt too wide) in paragraph at lines 7142--7142 []\OT1/cmtt/m/n/10 GrB_Info GxB_select // C = accum (C, o p(A,k)) or op(A',k)[] Overfull \hbox (18.40335pt too wide) in paragraph at lines 7182--7201 [][] [140] [141] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. [142] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. [143] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7326. [144] Overfull \hbox (9.00838pt too wide) in paragraph at lines 7372--7379 [][][]\OT1/cmtt/m/n/12 GrB_transpose []\OT1/cmr/m/n/12 trans-poses a ma-trix [] []\OT1/cmtt/m/n/12 A[]\OT1/cmr/m/n/12 , just like the ar-ray trans-pose [][]\OT 1/cmtt/m/n/12 T = A.' [145] Overfull \hbox (10.46268pt too wide) in paragraph at lines 7417--7423 []\OT1/cmr/m/n/12 Since the in-put ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/ n/12 is trans-posed by the de-scrip-tor, SuiteSparse:Graph- [146] Overfull \hbox (12.44847pt too wide) in paragraph at lines 7479--7481 [][][]\OT1/cmtt/m/n/12 GxB_kron []\OT1/cmr/m/n/12 com-putes the Kro-necker prod -uct, $[]$ where [147] Overfull \hbox (2.84326pt too wide) in paragraph at lines 7517--7524 []\OT1/cmr/m/n/12 The 9 dif-fer-ent ob-jects han-dled by Suite-Sparse:GraphBLAS are all opaque, Overfull \hbox (20.73615pt too wide) in paragraph at lines 7517--7524 [][]\OT1/cmtt/m/n/12 GrB_Matrix_extractTuples[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/ m/n/12 GrB_Matrix_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_Ma trix_type[]\OT1/cmr/m/n/12 , [148] Overfull \hbox (1.52788pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 As a re-sult, the ex-act con-tent and for-mat of what is printe d is implementation- Overfull \hbox (7.41396pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 dependent, and will change from ver-sion to ver-sion of Suite-S parse:GraphBLAS. [149] Overfull \hbox (59.93402pt too wide) in paragraph at lines 7670--7672 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Type_fprint (GrB_BOOL , "boolean type", GxB_COMPLETE, f) [150] Overfull \hbox (22.884pt too wide) in paragraph at lines 7690--7693 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_UnaryOp_fprint (GrB_L NOT, "not", GxB_COMPLETE, f) Overfull \hbox (66.10902pt too wide) in paragraph at lines 7711--7714 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_BinaryOp_fprint (GrB_ PLUS_FP64, "plus", GxB_COMPLETE, f) Overfull \hbox (35.23401pt too wide) in paragraph at lines 7732--7735 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_SelectOp_fprint (GxB_ TRIL, "tril", GxB_COMPLETE, f) [151] Overfull \hbox (35.23401pt too wide) in paragraph at lines 7753--7758 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Monoid_fprint (GxB_PL US_FP64_MONOID, "plus monoid", Overfull \hbox (22.884pt too wide) in paragraph at lines 7775--7779 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Semiring_fprint (GxB_ PLUS_TIMES_FP64, "standard", Overfull \hbox (41.40901pt too wide) in paragraph at lines 7796--7799 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Descriptor_fprint (d, "descriptor", GxB_COMPLETE, f) [152] Overfull \hbox (24.38643pt too wide) in paragraph at lines 7817--7820 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Matrix_fprint (A, "my matrix", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints Overfull \hbox (24.38643pt too wide) in paragraph at lines 7838--7841 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Vector_fprint (v, "my vector", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints [153] LaTeX Warning: Citation `GilbertMolerSchreiber92' on page 154 undefined on inpu t line 7890. [154] Overfull \hbox (11.36362pt too wide) in paragraph at lines 7907--7914 [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_B inaryOp_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_Monoid_new[]\OT1/cmr/m/ n/12 , and [][]\OT1/cmtt/m/n/12 GrB_Semiring_new[]\OT1/cmr/m/n/12 . [155] Overfull \hbox (18.8768pt too wide) in paragraph at lines 8011--8017 []\OT1/cmr/m/n/12 Some user def-i-ni-tions such as the [][]\OT1/cmtt/m/n/12 sta tic inline []\OT1/cmr/m/n/12 func-tions [][]\OT1/cmtt/m/n/12 my_complex_plus [156] [157] Overfull \hbox (42.06075pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 In ei-ther case, when the user ap-pli-ca-tion is fin-ished, it can do [][]\OT1/cmtt/m/n/12 GrB_free(My_Complex)[]\OT1/cmr/m/n/12 . Overfull \hbox (60.34145pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 This safely does noth-ing if [][]\OT1/cmtt/m/n/12 My_Complex [] \OT1/cmr/m/n/12 is de-fined at compile-time with [][]\OT1/cmtt/m/n/12 GxB_Type_ define[]\OT1/cmr/m/n/12 , Overfull \hbox (47.07416pt too wide) in paragraph at lines 8127--8137 \OT1/cmr/m/n/12 ma-trix, com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B []\OT1/cmr/m/n/ 12 via [][]\OT1/cmtt/m/n/12 GrB_mxm []\OT1/cmr/m/n/12 with the pre-compiled [][ ]\OT1/cmtt/m/n/12 My_Complex_plus_times [158] [159] Overfull \hbox (20.94887pt too wide) in paragraph at lines 8151--8158 []\OT1/cmr/m/n/12 An ex-am-ple macro name con-flict oc-curs in the [][]\OT1/cmt t/m/n/12 User/Example/my_complex.m4 [160] Overfull \hbox (17.79352pt too wide) in paragraph at lines 8205--8212 \OT1/cmr/m/n/12 a type when Suite-Sparse:GraphBLAS is com-piled. In-stead of th e [][]\OT1/cmtt/m/n/12 sizeof(ctype) Overfull \hbox (42.33655pt too wide) in paragraph at lines 8205--8212 []\OT1/cmr/m/n/12 sec-ond pa-ram-e-ter of [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\O T1/cmr/m/n/12 , the sec-ond pa-ram-e-ter [][]\OT1/cmtt/m/n/12 ctype []\OT1/cmr/ m/n/12 of [][]\OT1/cmtt/m/n/12 GxB_Type_define [161] [162] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8352--8352 []\OT1/cmtt/m/n/10 GxB_Semiring_define(GrB_Semiring semiring, GrB_Monoid add, G rB_BinaryOp mult) ;[] Overfull \hbox (22.70183pt too wide) in paragraph at lines 8354--8361 \OT1/cmr/m/n/12 ram-e-ter is a [][]\OT1/cmtt/m/n/12 GrB_Monoid []\OT1/cmr/m/n/1 2 that is ei-ther pre-de-fined (such as [][]\OT1/cmtt/m/n/12 GxB_PLUS_TIMES_FP6 4[]\OT1/cmr/m/n/12 ) [163] [164] [165] [166] LaTeX Warning: Citation `Luby86' on page 167 undefined on input line 8530. Overfull \hbox (35.24629pt too wide) in paragraph at lines 8565--8565 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] [167] Overfull \hbox (12.42628pt too wide) in paragraph at lines 8615--8615 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8615--8615 [] \OT1/ cmtt/m/n/10 NULL) ;[] Overfull \hbox (0.18333pt too wide) in paragraph at lines 8618--8628 \OT1/cmr/m/n/12 col-umn [][]\OT1/cmtt/m/n/12 A(:,j) []\OT1/cmr/m/n/12 is the ad -ja-cency of node [][]\OT1/cmtt/m/n/12 j[]\OT1/cmr/m/n/12 , and the dot prod-uc t [][]\OT1/cmtt/m/n/12 prob'*A(:,j) [168] [169] [170] [171] LaTeX Warning: Citation `Davis07' on page 172 undefined on input line 8807. LaTeX Warning: Citation `Davis07' on page 172 undefined on input line 8815. LaTeX Warning: Citation `Higham' on page 172 undefined on input line 8835. LaTeX Warning: Citation `Wathen' on page 172 undefined on input line 8837. [172] [173] Overfull \hbox (24.54538pt too wide) in paragraph at lines 8884--8891 \OT1/cmr/m/n/12 ca-tion to con-struct the tu-ple list, and is al-most as fast a s us-ing [][]\OT1/cmtt/m/n/12 GrB_Matrix_build[]\OT1/cmr/m/n/12 . Overfull \hbox (3.74657pt too wide) in paragraph at lines 8919--8919 [] \OT1/cmtt/m/n/10 GrB_Matrix_setElement (F, em (krow,kcol) , krow, kcol) ;[] [174] [175] [176] [177] LaTeX Warning: Citation `WolfBerryStark15' on page 178 undefined on input line 9120. LaTeX Warning: Citation `Burkhardt16' on page 178 undefined on input line 9122. LaTeX Warning: Citation `AzadBulucGilbert15' on page 178 undefined on input lin e 9124. LaTeX Warning: Citation `Cohen09' on page 178 undefined on input line 9124. LaTeX Warning: Citation `WolfDeveciBerryHammondRajamanickam17' on page 178 unde fined on input line 9126. LaTeX Warning: Citation `Davis18b' on page 178 undefined on input line 9139. [178] Overfull \hbox (32.48866pt too wide) in paragraph at lines 9172--9188 [][] Underfull \hbox (badness 10000) in paragraph at lines 9172--9188 [179] Overfull \hbox (21.90607pt too wide) in paragraph at lines 9210--9210 []\OT1/cmr/bx/n/14.4 User ap-pli-ca-tions us-ing OpenMP or POSIX pthreads Overfull \hbox (4.40424pt too wide) in paragraph at lines 9214--9220 \OT1/cmr/m/n/12 Two ex-am-ple demo pro-grams are in-cluded that il-lus-trate ho w a multi-threaded [180] Overfull \hbox (69.41573pt too wide) in paragraph at lines 9269--9269 []\OT1/cmr/bx/n/17.28 Compiling and In-stalling Suite-Sparse:GraphBLAS [181] Overfull \hbox (5.3059pt too wide) in paragraph at lines 9322--9329 \OT1/cmr/m/n/12 pthreads. If OpenMP is present, it uses OpenMP crit-i-cal sec-t ions for [][]\OT1/cmtt/m/n/12 GrB_wait Overfull \hbox (0.44614pt too wide) in paragraph at lines 9356--9358 []\OT1/cmr/m/n/12 no user thread-ing: com-pile with [][]\OT1/cmtt/m/n/12 cmake -DUSER_NONE=1[]\OT1/cmr/m/n/12 . \OT1/cmr/bx/n/12 Graph-BLAS Overfull \hbox (9.50793pt too wide) in paragraph at lines 9373--9376 [][]\OT1/cmtt/m/n/12 GxB_BY_ROW []\OT1/cmr/m/n/12 for-mat. You can change the d e-fault at com-pile time to [][]\OT1/cmtt/m/n/12 GxB_BY_COL [182] Overfull \hbox (52.64896pt too wide) in paragraph at lines 9389--9389 [] \OT1/cmtt/m/n/10.95 if (s == GxB_BY_COL) printf ("all new matrices are st ored by column\n") :[] Overfull \hbox (3.09839pt too wide) in paragraph at lines 9404--9410 \OT1/cmr/m/n/12 Then do [][]\OT1/cmtt/m/n/12 make []\OT1/cmr/m/n/12 in the [][] \OT1/cmtt/m/n/12 build []\OT1/cmr/m/n/12 di-rec-tory. If this still fails, see the [][]\OT1/cmtt/m/n/12 CMakeLists.txt Overfull \hbox (0.91077pt too wide) in paragraph at lines 9427--9427 [] \OT1/cmtt/m/n/10.95 # cmake 2.8 workaround: gcc needs to be told to d o ANSI C11.[] [183] Overfull \hbox (49.52692pt too wide) in paragraph at lines 9429--9432 []\OT1/cmr/m/n/12 To com-pile Suite-Sparse:GraphBLAS with-out run-ning the de-m os, use [][]\OT1/cmtt/m/n/12 make library Overfull \hbox (5.06398pt too wide) in paragraph at lines 9433--9436 []\OT1/cmr/m/n/12 file, but these are meant only for code de-vel-op-ment of Sui te-Sparse:GraphBLAS Overfull \hbox (1.21198pt too wide) in paragraph at lines 9457--9460 \OT1/cmr/m/n/12 To in-stall the li-brary (typ-i-cally in [][]\OT1/cmtt/m/n/12 / usr/local/lib []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 /usr/local/include [184] Overfull \hbox (0.30112pt too wide) in paragraph at lines 9507--9514 \OT1/cmss/m/n/12 redislabs . com / redis-[]enterprise / technology / redisgraph /$[][]\OT1/cmr/m/n/12 ), a graph database mod- Overfull \hbox (36.16724pt too wide) in paragraph at lines 9507--9514 [][]$\OT1/cmss/m/n/10 https : / / redislabs . com / blog / new-[]redisgraph-[]1 -[]0-[]achieves-[]600x-[]faster-[]performance-[]graph-[]databases/$[][]\OT1/cmr /m/n/12 ). [185] (./GraphBLAS_UserGuide.bbl Underfull \hbox (badness 5696) in paragraph at lines 20--26 []\OT1/cmr/m/n/10.95 A. Bulu^^Xc and J. Gilbert. Par-al-lel sparse matrix-matr ix Underfull \hbox (badness 1210) in paragraph at lines 20--26 \OT1/cmr/m/n/10.95 mul-ti-pli-ca-tion and in-dex-ing: Im-ple-men-ta-tion and ex -per-i-ments. Underfull \hbox (badness 10000) in paragraph at lines 43--48 []\OT1/cmr/m/n/10.95 P. Burkhardt. Graph-ing tril-lions of tri-an- Underfull \hbox (badness 10000) in paragraph at lines 43--48 \OT1/cmr/m/n/10.95 gles. \OT1/cmr/m/it/10.95 In-for-ma-tion Vi-su-al-iza-tion\ OT1/cmr/m/n/10.95 , 16:157--166, 2016. Underfull \hbox (badness 2073) in paragraph at lines 60--67 []\OT1/cmr/m/n/10 Provides a ba-sic overview of many sparse ma-trix al-go- Underfull \hbox (badness 1859) in paragraph at lines 60--67 \OT1/cmr/m/n/10 rithms and a sim-ple sparse ma-trix data struc-ture. The Underfull \hbox (badness 6380) in paragraph at lines 70--75 []\OT1/cmr/m/n/10.95 T. A Davis. Cre-at-ing sparse finite-element ma-tri-ces i n Underfull \hbox (badness 5490) in paragraph at lines 70--75 \OT1/cmr/m/n/10.95 MAT-LAB. \OT1/cmr/m/it/10.95 Loren on the Art of MAT-LAB\OT 1/cmr/m/n/10.95 , Mar. 2007. Underfull \hbox (badness 5985) in paragraph at lines 70--75 \OT1/cmr/m/n/10.95 Loren Shure, ed-i-tor. Pub-lished by The Math-Works, Nat- [186] Underfull \hbox (badness 10000) in paragraph at lines 84--90 []\OT1/cmr/m/n/10.95 T. A. Davis. Al-go-rithm 9xx: Suite-Sparse:GraphBLAS: Underfull \hbox (badness 10000) in paragraph at lines 84--90 \OT1/cmr/m/n/10.95 graph al-go-rithms in the lan-guage of sparse lin-ear al-ge- Underfull \hbox (badness 2932) in paragraph at lines 84--90 \OT1/cmr/m/n/10.95 bra. \OT1/cmr/m/it/10.95 ACM Trans. on Math. Soft-ware\OT1/ cmr/m/n/10.95 , (to ap-pear), 2019. Underfull \hbox (badness 5924) in paragraph at lines 130--136 []\OT1/cmr/m/n/10.95 F. G. Gus-tavson. Two fast al-go-rithms for sparse ma- Underfull \hbox (badness 5231) in paragraph at lines 130--136 \OT1/cmr/m/n/10.95 tri-ces: Mul-ti-pli-ca-tion and per-muted trans-po-si-tion. \OT1/cmr/m/it/10.95 ACM Underfull \hbox (badness 5924) in paragraph at lines 130--136 \OT1/cmr/m/it/10.95 Trans-ac-tions on Math-e-mat-i-cal Soft-ware\OT1/cmr/m/n/10 .95 , 4(3):250--269, 1978. [187] Underfull \hbox (badness 4454) in paragraph at lines 147--152 []\OT1/cmr/m/n/10.95 J. Kep-ner. Graph-BLAS math-e-mat-ics. Tech-ni-cal re-po rt, Underfull \hbox (badness 4621) in paragraph at lines 147--152 \OT1/cmr/m/n/10.95 2017. [][]http://www.mit.edu/$\OMS/cmsy/m/n/10.95 ^^X$\OT1/ cmr/m/n/10.95 kepner/GraphBLAS/GraphBLAS- Underfull \hbox (badness 1540) in paragraph at lines 183--188 []\OT1/cmr/m/n/10.95 M. Luby. A sim-ple par-al-lel al-go-rithm for the max-i-m al in- Underfull \hbox (badness 4341) in paragraph at lines 183--188 \OT1/cmr/m/n/10.95 de-pen-dent set prob-lem. \OT1/cmr/m/it/10.95 SIAM J. Com-p ut.\OT1/cmr/m/n/10.95 , 15(4), 1986. Underfull \hbox (badness 1226) in paragraph at lines 191--196 []\OT1/cmr/m/n/10.95 A. J. Wa-then. Re-al-is-tic eigen-value bounds for the Ga lerkin Underfull \hbox (badness 6944) in paragraph at lines 191--196 \OT1/cmr/m/n/10.95 mass ma-trix. \OT1/cmr/m/it/10.95 IMA J. Nu-mer. Anal.\OT1/ cmr/m/n/10.95 , 7:449--457, 1987. [188] Underfull \hbox (badness 2205) in paragraph at lines 205--211 \OT1/cmr/m/n/10.95 S. Ra-ja-man-ickam. Fast lin-ear algebra-based tri-an-gle c ount- Underfull \hbox (badness 1783) in paragraph at lines 205--211 \OT1/cmr/m/it/10.95 treme Com-put-ing Con-fer-ence (HPEC)\OT1/cmr/m/n/10.95 , p ages 1--7, Sept 2017. ) [189] (./GraphBLAS_UserGuide.aux) Package rerunfilecheck Warning: File `GraphBLAS_UserGuide.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb> Output written on GraphBLAS_UserGuide.pdf (189 pages, 742431 bytes). Transcript written on GraphBLAS_UserGuide.log. pdflatex GraphBLAS_UserGuide.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./GraphBLAS_UserGuide.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdframed/mdframed.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/zref-abspage.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/zref-base.sty)) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdframed/md-frame-0.mdf)) (./GraphBLAS_version.tex) (./GraphBLAS_UserGuide.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./GraphBLAS_UserGuide.out) (./GraphBLAS_UserGuide.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./GraphBLAS_UserGuide.toc [2] [3] [4] Overfull \hbox (3.4828pt too wide) in paragraph at lines 145--145 [][] [][][]\OT1/cmr/m/n/10.95 Performance of \OT1/cmss/m/n/10.95 GxB[]subassig n\OT1/cmr/m/n/10.95 , \OT1/cmss/m/n/10.95 GrB[]assign \OT1/cmr/m/n/10.95 and \O T1/cmss/m/n/10.95 GrB[]*[]setElement[][] [][] [5]) [6] (./GraphBLAS_API_version.tex) [7] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (6.77888pt too wide) in paragraph at lines 138--142 []\OT1/cmr/m/n/12 New ex-ten-sions to Graph-BLAS in this ver-sion in-clude [][] \OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_set[]\OT1/ cmr/m/n/12 , [8] [9] Overfull \hbox (0.69284pt too wide) in paragraph at lines 235--240 []\OT1/cmr/m/it/12 Graph Al-go-rithms in the Lan-guage on Lin-ear Al-ge-bra\OT1 /cmr/m/n/12 , Kep-ner and Gilbert, [10] [11] [12] [13] [14] Overfull \hbox (8.66713pt too wide) in paragraph at lines 469--474 []\OT1/cmr/m/n/12 The Ac-cu-mu-la-tor Phase is fol-lowed by the Mask/Replace Ph ase, $[]$ Overfull \hbox (8.47243pt too wide) in paragraph at lines 545--545 [] \OT1/cmtt/m/n/10 p = C.pattern & T.pattern ; Z.matrix (p) = accum (C.mat rix (p), T.matrix (p));[] [15] [16] [17] Overfull \hbox (13.20271pt too wide) in paragraph at lines 646--649 \OT1/cmr/m/n/12 ANSI C. Yet C leaves some type-cast-ing un-de-fined. Suite-Spar se:GraphBLAS [18] [19] Overfull \hbox (19.49643pt too wide) in paragraph at lines 787--787 [] \OT1/cmtt/m/n/10 ... use features from version 1.4.0 of a specific GraphB LAS implementation[] [20] [21] Overfull \hbox (0.80347pt too wide) in paragraph at lines 914--921 \OT1/cmr/m/n/12 namely: [][]\OT1/cmtt/m/n/12 GrB_*_nvals[]\OT1/cmr/m/n/12 , [][ ]\OT1/cmtt/m/n/12 GrB_*_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_*_extractTuples[]\OT1/cmr/m/n/12 , and [22] [23] [24] Overfull \hbox (16.27414pt too wide) in paragraph at lines 1018--1029 \OT1/cmr/m/n/12 spe-cific ob-jects, [][]\OT1/cmtt/m/n/12 GrB_*_nvals[]\OT1/cmr/ m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_*_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/ cmtt/m/n/12 GrB_*_extractTuples[]\OT1/cmr/m/n/12 , [25] [26] [27] [28] Overfull \hbox (3.67369pt too wide) in paragraph at lines 1183--1204 [] Overfull \hbox (5.08691pt too wide) in paragraph at lines 1215--1219 []\OT1/cmr/bx/n/12 SPEC: \OT1/cmr/m/n/12 Suite-Sparse:GraphBLAS pre-de-fines al l unique monoids and semir- [29] [30] [31] Overfull \hbox (3.28505pt too wide) in paragraph at lines 1393--1396 [][]\OT1/cmtt/m/n/12 GxB_Type_size (&s, GrB_INT32) []\OT1/cmr/m/n/12 sets [][]\ OT1/cmtt/m/n/12 s []\OT1/cmr/m/n/12 to 4, the same as [][]\OT1/cmtt/m/n/12 size of(int32_t)[]\OT1/cmr/m/n/12 . [32] [33] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1455. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1455. [34] Overfull \hbox (1.92638pt too wide) in paragraph at lines 1543--1543 []\OT1/cmtt/m/n/10 GrB_Info GrB_UnaryOp_new // create a new user-def ined unary operator[] [35] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1577. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1577. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1600. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1600. [36] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1654. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1654. Overfull \hbox (1.14636pt too wide) in paragraph at lines 1672--1703 [][] [37] [38] Overfull \hbox (10.58614pt too wide) in paragraph at lines 1781--1790 \OT1/cmr/m/n/12 XOR op-er-a-tors. With-out the [][]\OT1/cmtt/m/n/12 _$\OML/cmm/ m/it/12 T$ []\OT1/cmr/m/n/12 suf-fix, the three op-er-a-tors [][]\OT1/cmtt/m/n/ 12 GrB_LOR[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_LAND[]\OT1/cmr/m/n/12 , [39] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. [40] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. [41] Overfull \hbox (28.54279pt too wide) in paragraph at lines 1979--1979 []\OT1/cmr/bx/n/14.4 SuiteSparse:GraphBLAS se-lect op-er-a-tors: \OT1/cmss/m/n/ 14.4 GxB[]SelectOp Overfull \hbox (8.99652pt too wide) in paragraph at lines 2005--2005 [] \OT1/cmtt/m/n/10 const void *x, // value of A(i,j), or NULL if f is type-generic[] [42] [43] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. [44] Overfull \hbox (0.52374pt too wide) in paragraph at lines 2186--2206 [][] [45] [46] [47] Overfull \hbox (14.0537pt too wide) in paragraph at lines 2388--2392 \OT1/cmr/m/n/12 This count ex-cludes re-dun-dant Boolean op-er-a-tors (for ex-a m-ple [][]\OT1/cmtt/m/n/12 GrB_TIMES_BOOL [48] [49] Overfull \hbox (7.17633pt too wide) in paragraph at lines 2473--2473 [] \OT1/cmtt/m/n/10 GrB_BinaryOp *multiply, // returns multiply oper ator of the semiring[] [50] [51] Overfull \hbox (12.47293pt too wide) in paragraph at lines 2585--2589 \OT1/cmr/m/n/12 of the given type. This is anal-o-gous to MAT-LAB state-ment [] []\OT1/cmtt/m/n/12 v = sparse (n,1)[]\OT1/cmr/m/n/12 , [52] Overfull \hbox (32.7161pt too wide) in paragraph at lines 2647--2654 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sion of [][]\OT1/cmtt/m/n/12 v []\ OT1/cmr/m/n/12 do not change. In Suite-Sparse:GraphBLAS, [53] Overfull \hbox (33.82916pt too wide) in paragraph at lines 2731--2733 [][][]\OT1/cmtt/m/n/12 GxB_Vector_type []\OT1/cmr/m/n/12 re-turns the type of a vec-tor. Anal-o-gous to [][]\OT1/cmtt/m/n/12 type = class (v) [54] Overfull \hbox (5.42024pt too wide) in paragraph at lines 2791--2796 \OT1/cmr/m/n/12 op-er-a-tion is ex-actly like set-ting a sin-gle en-try in an [ ][]\OT1/cmtt/m/n/12 n[]\OT1/cmr/m/n/12 -by-1 ma-trix, [][]\OT1/cmtt/m/n/12 A(i, 0) = x[]\OT1/cmr/m/n/12 , [55] Overfull \hbox (22.40071pt too wide) in paragraph at lines 2814--2823 [][][]\OT1/cmtt/m/n/12 GrB_Vector_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a vec-tor, [][]\OT1/cmtt/m/n/12 x = v(i)[]\OT1/cmr/m/n/12 . [56] [57] [58] Overfull \hbox (7.00394pt too wide) in paragraph at lines 3025--3032 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sions of [][]\OT1/cmtt/m/n/12 A [] \OT1/cmr/m/n/12 do not change. In SuiteSparse:Graph- Overfull \hbox (15.03809pt too wide) in paragraph at lines 3049--3051 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows []\OT1/cmr/m/n/12 re-turns the num-ber of rows of a ma-trix ([][]\OT1/cmtt/m/n/12 nrow=size(A,1) [59] Overfull \hbox (39.81706pt too wide) in paragraph at lines 3069--3071 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_ncols []\OT1/cmr/m/n/12 re-turns the num-ber of columns of a ma-trix ([][]\OT1/cmtt/m/n/12 ncols=size(A,2) [60] [61] [62] [63] Overfull \hbox (11.6521pt too wide) in paragraph at lines 3280--3293 [][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G xB_Matrix_type[]\OT1/cmr/m/n/12 , and of course [][]\OT1/cmtt/m/n/12 GrB_Matrix _setElement Overfull \hbox (21.81322pt too wide) in paragraph at lines 3315--3317 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a ma-trix [][]\OT1/cmtt/m/n/12 x=A(i,j)[]\OT1/cmr/m/n/12 . [64] Overfull \hbox (39.24196pt too wide) in paragraph at lines 3384--3393 []\OT1/cmr/m/n/12 The num-ber of tu-ples in the ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/n/12 is given by [][]\OT1/cmtt/m/n/12 GrB_Matrix_nvals(&anvals,A)[ ]\OT1/cmr/m/n/12 . [65] [66] [67] [68] [69] Overfull \hbox (4.20209pt too wide) in paragraph at lines 3583--3589 [][]\OT1/cmtt/m/n/12 desc [GrB_INP1] []\OT1/cmr/m/n/12 mod-i-fies the ma-trix p a-ram-e-ter and [][]\OT1/cmtt/m/n/12 desc [GrB_INP0] Overfull \hbox (7.54486pt too wide) in paragraph at lines 3611--3620 [][][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 : a heap-based method, com -put-ing [][]\OT1/cmtt/m/n/12 C(:,j)=A*B(:,j) [70] [71] Overfull \hbox (17.0722pt too wide) in paragraph at lines 3682--3687 [][][]\OT1/cmtt/m/n/12 GrB_Descriptor_set []\OT1/cmr/m/n/12 sets a de-scrip-tor field ([][]\OT1/cmtt/m/n/12 GrB_OUTP[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G rB_MASK[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_INP0[]\OT1/cmr/m/n/12 , Overfull \hbox (6.71817pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_INP1[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 GxB_Ax B_METHOD[]\OT1/cmr/m/n/12 ) to a par-tic-u-lar value ([][]\OT1/cmtt/m/n/12 GxB_ DEFAULT[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_SCMP[]\OT1/cmr/m/n/12 , Overfull \hbox (18.71361pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_TRAN[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_REPLA CE[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_GUSTAVSON[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 G xB_AxB_DOT[]\OT1/cmr/m/n/12 ). Underfull \hbox (badness 2020) in paragraph at lines 3701--3705 [][][]\OT1/cmtt/m/n/10.95 GrB_REPLACE[]\OT1/cmr/m/n/10.95 : Af-ter com-put-ing Underfull \hbox (badness 2922) in paragraph at lines 3701--3705 []$\OT1/cmr/m/n/10.95 , the out-put \OT1/cmr/bx/n/10.95 C \OT1/cmr/m/n/10.95 is Underfull \hbox (badness 2035) in paragraph at lines 3701--3705 \OT1/cmr/m/n/10.95 cleared of all en-tries. Then Underfull \hbox (badness 4981) in paragraph at lines 3713--3717 \OT1/cmr/m/n/10.95 op-er-a-tion, while [][]\OT1/cmtt/m/n/10.95 Mask(i,j)=1 Underfull \hbox (badness 3838) in paragraph at lines 3723--3726 [][][]\OT1/cmtt/m/n/10.95 GrB_TRAN[]\OT1/cmr/m/n/10.95 : The first in-put is Underfull \hbox (badness 6252) in paragraph at lines 3741--3743 \OT1/cmr/m/n/10.95 method is used to com-pute Overfull \hbox (58.92297pt too wide) in paragraph at lines 3689--3747 [] Underfull \hbox (badness 10000) in paragraph at lines 3689--3747 [72] [73] [74] Overfull \hbox (14.24648pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 H = G ; // valid; creates a 2nd handle o f the same object[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 GrB_free (&G) ; // valid; G is freed and set to NULL; H now undefined[] [75] Overfull \hbox (0.7007pt too wide) in paragraph at lines 3889--3897 []\OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes two type-generic meth-ods, [] []\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/n/12 and Overfull \hbox (12.98712pt too wide) in paragraph at lines 3906--3911 [][][]\OT1/cmtt/m/n/12 GxB_set (GrB_Matrix A, field, value) []\OT1/cmr/m/n/12 p ro-vides hints to Suite-Sparse: Overfull \hbox (31.22649pt too wide) in paragraph at lines 3912--3918 [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , just with a generic name. Ex-cept for [][]\OT1/cmtt/m/n/12 GxB_AxB_METHOD[]\OT1/cmr/m/n/12 , Overfull \hbox (1.08037pt too wide) in paragraph at lines 3929--3931 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Matrix A, field, &value) []\OT1/cmr/m/n/12 re-trieves the cur-rent value Overfull \hbox (4.81274pt too wide) in paragraph at lines 3932--3934 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Descriptor desc, field, &value) []\OT1/cmr/ m/n/12 re-trieves the value [76] Overfull \hbox (11.60793pt too wide) in paragraph at lines 3974--3981 \OT1/cmr/m/n/12 Graph-BLAS API Spec-i-fi-ca-tion, where the breadth-first searc h [][]\OT1/cmtt/m/n/12 BFS []\OT1/cmr/m/n/12 uses [][]\OT1/cmtt/m/n/12 GrB_vxm [77] Overfull \hbox (14.33583pt too wide) in paragraph at lines 3999--4005 \OT1/cmr/m/n/12 can be com-piled with [][]\OT1/cmtt/m/n/12 -DBYCOL[]\OT1/cmr/m/ n/12 , which changes the de-fault for-mat to [][]\OT1/cmtt/m/n/12 GxB_BY_COL[]\ OT1/cmr/m/n/12 , [78] Overfull \hbox (3.22508pt too wide) in paragraph at lines 4053--4057 []\OT1/cmr/m/n/12 If a ma-trix is cur-rently hy-per-sparse, it can be con-verte d to non-hypersparse [79] Overfull \hbox (18.1564pt too wide) in paragraph at lines 4082--4087 [][]\OT1/cmtt/m/n/12 GxB_BY_COL []\OT1/cmr/m/n/12 for-mat, as de-ter-mined by t he last call to [][]\OT1/cmtt/m/n/12 GxB_set(GxB_FORMAT,...) Overfull \hbox (3.83885pt too wide) in paragraph at lines 4092--4097 \OT1/cmr/m/n/12 type of the [][]\OT1/cmtt/m/n/12 field []\OT1/cmr/m/n/12 pa-ram -e-ter for the sec-ond ar-gu-ment of [][]\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/ n/12 and [][]\OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , Overfull \hbox (8.99652pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_HYPER, // defines switch to hypersparse format (a double value)[] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_MODE, // mode passed to GrB_init (blocking or non-blocking)[] [80] [81] [82] Overfull \hbox (35.86514pt too wide) in paragraph at lines 4247--4252 \OT1/cmr/m/n/12 al-lelism. In this case, the [][]\OT1/cmtt/m/n/12 GxB_THREADING []\OT1/cmr/m/n/12 op-tion will re-turn ei-ther [][]\OT1/cmtt/m/n/12 GxB_THREAD _NONE [83] Overfull \hbox (44.81151pt too wide) in paragraph at lines 4337--4342 \OT1/cmr/m/n/12 con-sis-tent with the other us-ages of this generic func-tion. Un-like [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , [84] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (s == GxB_BY_COL) printf ("all new matrices are store d by column\n") :[] Overfull \hbox (24.74638pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (mode == GrB_BLOCKING) printf ("GrB_init(GrB_BLOCKING ) was called.\n") :[] [85] [86] [87] [88] Overfull \hbox (2.24268pt too wide) in paragraph at lines 4510--4517 \OT1/cmr/m/n/12 MATLAB uses a colon no-ta-tion to in-dex into ma-tri-ces, such as [][]\OT1/cmtt/m/n/12 C=A(2:4,3:8)[]\OT1/cmr/m/n/12 , [89] Overfull \hbox (5.33707pt too wide) in paragraph at lines 4570--4573 []\OT1/cmr/m/n/12 The [][]\OT1/cmtt/m/n/12 GrB_extract[]\OT1/cmr/m/n/12 , [][]\ OT1/cmtt/m/n/12 GrB_assign[]\OT1/cmr/m/n/12 , and [][]\OT1/cmtt/m/n/12 GrB_suba ssign []\OT1/cmr/m/n/12 op-er-a-tions (de-scribed Overfull \hbox (6.98373pt too wide) in paragraph at lines 4600--4607 \OT1/cmr/m/n/12 the spe-cial value [][]\OT1/cmtt/m/n/12 ni = GxB_RANGE[]\OT1/cm r/m/n/12 . The be-gin-ning in-dex is [][]\OT1/cmtt/m/n/12 I[GxB_BEGIN] [90] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4644--4644 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i <= I [GxB_END] ; i + = I [GxB_INC])[] [91] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4690--4690 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i >= I [GxB_END] ; i - = I [GxB_INC])[] [92] [93] [94] Overfull \hbox (2.05571pt too wide) in paragraph at lines 4874--4890 [][] Underfull \hbox (badness 10000) in paragraph at lines 4874--4890 [95] [96] Overfull \hbox (4.29825pt too wide) in paragraph at lines 4959--4962 [][][]\OT1/cmtt/m/n/12 A.pattern[]\OT1/cmr/m/n/12 : a log-i-cal ma-trix hold-in g the pat-tern; [][]\OT1/cmtt/m/n/12 A.pattern(i,j)=true [97] Overfull \hbox (24.74638pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.matrix (:,:) = identity ; % the identity of th e semiring's monoid[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.class = multiply.ztype ; % the ztype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 A = cast (A.matrix, multiply.xtype) ; % the xtype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 B = cast (B.matrix, multiply.ytype) ; % the ytype of the s emiring's multiply op[] [98] Overfull \hbox (28.8088pt too wide) in paragraph at lines 5058--5067 \OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes three dif-fer-ent meth-ods for com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B[]\OT1/cmr/m/n/12 , [99] Overfull \hbox (54.12108pt too wide) in paragraph at lines 5134--5134 [] \OT1/cmtt/m/n/10 if M is present, or if A or B have a single column, or if B or A are dense:[] [100] [101] [102] Overfull \hbox (16.83702pt too wide) in paragraph at lines 5289--5293 [][]\OT1/cmtt/m/n/12 GrB_vxm []\OT1/cmr/m/n/12 in-stead of [][]\OT1/cmtt/m/n/12 GrB_mxv[]\OT1/cmr/m/n/12 , since the de-fault for-mat in Suite-Sparse:GraphBLA S [103] [104] Overfull \hbox (3.59013pt too wide) in paragraph at lines 5376--5382 \OT1/cmr/m/n/12 side the out-put ma-trix [][]\OT1/cmtt/m/n/12 C []\OT1/cmr/m/n/ 12 or vec-tor [][]\OT1/cmtt/m/n/12 w[]\OT1/cmr/m/n/12 , or for the the first ca ll to [][]\OT1/cmtt/m/n/12 GrB_mxm(C,...) [105] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5411--5416 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 $ \OT1/cmr/m/n/12 de-note the bi-nary op-er-a-tor to be used. The com-pu-ta-tio n $[]$ [106] [107] [108] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5552--5562 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 ^^H$ \OT1/cmr/m/n/12 de-note the bi-nar y op-er-a-tor to be used. The com-pu-ta-tion $[]$ [109] [110] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = A.pattern & ~B.pattern ; T.matrix (p) = cast (A.mat rix (p), add.ztype) ;[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = ~A.pattern & B.pattern ; T.matrix (p) = cast (B.mat rix (p), add.ztype) ;[] [111] [112] [113] Overfull \hbox (28.4599pt too wide) in paragraph at lines 5828--5835 [][][]\OT1/cmtt/m/n/12 GrB_Col_extract []\OT1/cmr/m/n/12 ex-tracts a sub-vec-to r from a ma-trix, iden-ti-cal to [][]\OT1/cmtt/m/n/12 t = A (I,j) [114] [115] Overfull \hbox (1.92638pt too wide) in paragraph at lines 5920--5920 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] Overfull \hbox (14.08577pt too wide) in paragraph at lines 5929--5940 [][] Overfull \hbox (16.61003pt too wide) in paragraph at lines 5957--5961 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, [][]\OT1/cmtt/m/n/12 GxB_Matrix _subassign[]\OT1/cmr/m/n/12 , the sub-ma-trix [][]\OT1/cmtt/m/n/12 C(I,J) [116] Overfull \hbox (11.08006pt too wide) in paragraph at lines 5978--5982 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, $[]$ is com-puted, where [117] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6042--6042 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(I ,j), unused if NULL[] Overfull \hbox (17.08905pt too wide) in paragraph at lines 6044--6052 \OT1/cmr/m/n/12 col-umn in-dex (and thus [][]\OT1/cmtt/m/n/12 nj=1[]\OT1/cmr/m/ n/12 ), and where all ma-tri-ces in [][]\OT1/cmtt/m/n/12 GxB_Matrix_subassign Overfull \hbox (1.92638pt too wide) in paragraph at lines 6079--6079 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,J), unused if NULL[] [118] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. 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Overfull \hbox (1.92638pt too wide) in paragraph at lines 6148--6148 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] [120] [121] [122] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6313--6313 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(: ,j), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6327--6330 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [123] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6351--6351 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,:), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6365--6368 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [124] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. 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[125] [126] Overfull \hbox (6.40782pt too wide) in paragraph at lines 6501--6512 [][]\OT1/cmtt/m/n/12 assign []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 subassig n[]\OT1/cmr/m/n/12 , re-sults are not de-fined for [][]\OT1/cmtt/m/n/12 GrB_Mat rix_*assign[]\OT1/cmr/m/n/12 , [127] Overfull \hbox (10.16943pt too wide) in paragraph at lines 6552--6559 []\OT1/cmr/m/n/12 This no-ta-tion does not in-clude the de-tails of the [][]\OT 1/cmtt/m/n/12 GrB_SCMP []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 GrB_REPLACE [128] Overfull \hbox (20.92456pt too wide) in paragraph at lines 6636--6682 [][] Underfull \hbox (badness 10000) in paragraph at lines 6636--6682 [129] [130] [131] [132] [133] Overfull \hbox (0.92876pt too wide) in paragraph at lines 6876--6878 []\OT1/cmr/m/n/12 The fol-low-ing guide-lines should be con-sid-ered when us-in g [][]\OT1/cmtt/m/n/12 GxB_subassign[]\OT1/cmr/m/n/12 , [134] Overfull \hbox (11.91185pt too wide) in paragraph at lines 6920--6937 \OT1/cmr/m/n/12 by 3 mil-lion, with 14.3 mil-lion nonze-ros. With the vec-tors [][]\OT1/cmtt/m/n/12 I=randperm(n,5500) [135] [136] [137] [138] [139] Overfull \hbox (1.92638pt too wide) in paragraph at lines 7142--7142 []\OT1/cmtt/m/n/10 GrB_Info GxB_select // C = accum (C, o p(A,k)) or op(A',k)[] Overfull \hbox (18.40335pt too wide) in paragraph at lines 7182--7201 [][] [140] [141] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. [142] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. 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[144] Overfull \hbox (9.00838pt too wide) in paragraph at lines 7372--7379 [][][]\OT1/cmtt/m/n/12 GrB_transpose []\OT1/cmr/m/n/12 trans-poses a ma-trix [] []\OT1/cmtt/m/n/12 A[]\OT1/cmr/m/n/12 , just like the ar-ray trans-pose [][]\OT 1/cmtt/m/n/12 T = A.' [145] Overfull \hbox (10.46268pt too wide) in paragraph at lines 7417--7423 []\OT1/cmr/m/n/12 Since the in-put ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/ n/12 is trans-posed by the de-scrip-tor, SuiteSparse:Graph- [146] Overfull \hbox (12.44847pt too wide) in paragraph at lines 7479--7481 [][][]\OT1/cmtt/m/n/12 GxB_kron []\OT1/cmr/m/n/12 com-putes the Kro-necker prod -uct, $[]$ where [147] Overfull \hbox (2.84326pt too wide) in paragraph at lines 7517--7524 []\OT1/cmr/m/n/12 The 9 dif-fer-ent ob-jects han-dled by Suite-Sparse:GraphBLAS are all opaque, Overfull \hbox (20.73615pt too wide) in paragraph at lines 7517--7524 [][]\OT1/cmtt/m/n/12 GrB_Matrix_extractTuples[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/ m/n/12 GrB_Matrix_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_Ma trix_type[]\OT1/cmr/m/n/12 , [148] Overfull \hbox (1.52788pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 As a re-sult, the ex-act con-tent and for-mat of what is printe d is implementation- Overfull \hbox (7.41396pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 dependent, and will change from ver-sion to ver-sion of Suite-S parse:GraphBLAS. [149] Overfull \hbox (59.93402pt too wide) in paragraph at lines 7670--7672 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Type_fprint (GrB_BOOL , "boolean type", GxB_COMPLETE, f) [150] Overfull \hbox (22.884pt too wide) in paragraph at lines 7690--7693 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_UnaryOp_fprint (GrB_L NOT, "not", GxB_COMPLETE, f) Overfull \hbox (66.10902pt too wide) in paragraph at lines 7711--7714 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_BinaryOp_fprint (GrB_ PLUS_FP64, "plus", GxB_COMPLETE, f) Overfull \hbox (35.23401pt too wide) in paragraph at lines 7732--7735 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_SelectOp_fprint (GxB_ TRIL, "tril", GxB_COMPLETE, f) [151] Overfull \hbox (35.23401pt too wide) in paragraph at lines 7753--7758 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Monoid_fprint (GxB_PL US_FP64_MONOID, "plus monoid", Overfull \hbox (22.884pt too wide) in paragraph at lines 7775--7779 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Semiring_fprint (GxB_ PLUS_TIMES_FP64, "standard", Overfull \hbox (41.40901pt too wide) in paragraph at lines 7796--7799 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Descriptor_fprint (d, "descriptor", GxB_COMPLETE, f) [152] Overfull \hbox (24.38643pt too wide) in paragraph at lines 7817--7820 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Matrix_fprint (A, "my matrix", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints Overfull \hbox (24.38643pt too wide) in paragraph at lines 7838--7841 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Vector_fprint (v, "my vector", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints [153] [154] Overfull \hbox (11.36362pt too wide) in paragraph at lines 7907--7914 [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_B inaryOp_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_Monoid_new[]\OT1/cmr/m/ n/12 , and [][]\OT1/cmtt/m/n/12 GrB_Semiring_new[]\OT1/cmr/m/n/12 . [155] Overfull \hbox (18.8768pt too wide) in paragraph at lines 8011--8017 []\OT1/cmr/m/n/12 Some user def-i-ni-tions such as the [][]\OT1/cmtt/m/n/12 sta tic inline []\OT1/cmr/m/n/12 func-tions [][]\OT1/cmtt/m/n/12 my_complex_plus [156] [157] Overfull \hbox (42.06075pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 In ei-ther case, when the user ap-pli-ca-tion is fin-ished, it can do [][]\OT1/cmtt/m/n/12 GrB_free(My_Complex)[]\OT1/cmr/m/n/12 . Overfull \hbox (60.34145pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 This safely does noth-ing if [][]\OT1/cmtt/m/n/12 My_Complex [] \OT1/cmr/m/n/12 is de-fined at compile-time with [][]\OT1/cmtt/m/n/12 GxB_Type_ define[]\OT1/cmr/m/n/12 , Overfull \hbox (47.07416pt too wide) in paragraph at lines 8127--8137 \OT1/cmr/m/n/12 ma-trix, com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B []\OT1/cmr/m/n/ 12 via [][]\OT1/cmtt/m/n/12 GrB_mxm []\OT1/cmr/m/n/12 with the pre-compiled [][ ]\OT1/cmtt/m/n/12 My_Complex_plus_times [158] [159] Overfull \hbox (20.94887pt too wide) in paragraph at lines 8151--8158 []\OT1/cmr/m/n/12 An ex-am-ple macro name con-flict oc-curs in the [][]\OT1/cmt t/m/n/12 User/Example/my_complex.m4 [160] Overfull \hbox (17.79352pt too wide) in paragraph at lines 8205--8212 \OT1/cmr/m/n/12 a type when Suite-Sparse:GraphBLAS is com-piled. In-stead of th e [][]\OT1/cmtt/m/n/12 sizeof(ctype) Overfull \hbox (42.33655pt too wide) in paragraph at lines 8205--8212 []\OT1/cmr/m/n/12 sec-ond pa-ram-e-ter of [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\O T1/cmr/m/n/12 , the sec-ond pa-ram-e-ter [][]\OT1/cmtt/m/n/12 ctype []\OT1/cmr/ m/n/12 of [][]\OT1/cmtt/m/n/12 GxB_Type_define [161] [162] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8352--8352 []\OT1/cmtt/m/n/10 GxB_Semiring_define(GrB_Semiring semiring, GrB_Monoid add, G rB_BinaryOp mult) ;[] Overfull \hbox (22.70183pt too wide) in paragraph at lines 8354--8361 \OT1/cmr/m/n/12 ram-e-ter is a [][]\OT1/cmtt/m/n/12 GrB_Monoid []\OT1/cmr/m/n/1 2 that is ei-ther pre-de-fined (such as [][]\OT1/cmtt/m/n/12 GxB_PLUS_TIMES_FP6 4[]\OT1/cmr/m/n/12 ) [163] [164] [165] [166] Overfull \hbox (35.24629pt too wide) in paragraph at lines 8565--8565 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] [167] Overfull \hbox (12.42628pt too wide) in paragraph at lines 8615--8615 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8615--8615 [] \OT1/ cmtt/m/n/10 NULL) ;[] Overfull \hbox (0.18333pt too wide) in paragraph at lines 8618--8628 \OT1/cmr/m/n/12 col-umn [][]\OT1/cmtt/m/n/12 A(:,j) []\OT1/cmr/m/n/12 is the ad -ja-cency of node [][]\OT1/cmtt/m/n/12 j[]\OT1/cmr/m/n/12 , and the dot prod-uc t [][]\OT1/cmtt/m/n/12 prob'*A(:,j) [168] [169] [170] [171] [172] [173] Overfull \hbox (24.54538pt too wide) in paragraph at lines 8884--8891 \OT1/cmr/m/n/12 ca-tion to con-struct the tu-ple list, and is al-most as fast a s us-ing [][]\OT1/cmtt/m/n/12 GrB_Matrix_build[]\OT1/cmr/m/n/12 . Overfull \hbox (3.74657pt too wide) in paragraph at lines 8919--8919 [] \OT1/cmtt/m/n/10 GrB_Matrix_setElement (F, em (krow,kcol) , krow, kcol) ;[] [174] [175] [176] [177] [178] Overfull \hbox (32.48866pt too wide) in paragraph at lines 9172--9188 [][] Underfull \hbox (badness 10000) in paragraph at lines 9172--9188 [179] Overfull \hbox (21.90607pt too wide) in paragraph at lines 9210--9210 []\OT1/cmr/bx/n/14.4 User ap-pli-ca-tions us-ing OpenMP or POSIX pthreads Overfull \hbox (4.40424pt too wide) in paragraph at lines 9214--9220 \OT1/cmr/m/n/12 Two ex-am-ple demo pro-grams are in-cluded that il-lus-trate ho w a multi-threaded [180] Overfull \hbox (69.41573pt too wide) in paragraph at lines 9269--9269 []\OT1/cmr/bx/n/17.28 Compiling and In-stalling Suite-Sparse:GraphBLAS [181] Overfull \hbox (5.3059pt too wide) in paragraph at lines 9322--9329 \OT1/cmr/m/n/12 pthreads. If OpenMP is present, it uses OpenMP crit-i-cal sec-t ions for [][]\OT1/cmtt/m/n/12 GrB_wait Overfull \hbox (0.44614pt too wide) in paragraph at lines 9356--9358 []\OT1/cmr/m/n/12 no user thread-ing: com-pile with [][]\OT1/cmtt/m/n/12 cmake -DUSER_NONE=1[]\OT1/cmr/m/n/12 . \OT1/cmr/bx/n/12 Graph-BLAS Overfull \hbox (9.50793pt too wide) in paragraph at lines 9373--9376 [][]\OT1/cmtt/m/n/12 GxB_BY_ROW []\OT1/cmr/m/n/12 for-mat. You can change the d e-fault at com-pile time to [][]\OT1/cmtt/m/n/12 GxB_BY_COL [182] Overfull \hbox (52.64896pt too wide) in paragraph at lines 9389--9389 [] \OT1/cmtt/m/n/10.95 if (s == GxB_BY_COL) printf ("all new matrices are st ored by column\n") :[] Overfull \hbox (3.09839pt too wide) in paragraph at lines 9404--9410 \OT1/cmr/m/n/12 Then do [][]\OT1/cmtt/m/n/12 make []\OT1/cmr/m/n/12 in the [][] \OT1/cmtt/m/n/12 build []\OT1/cmr/m/n/12 di-rec-tory. If this still fails, see the [][]\OT1/cmtt/m/n/12 CMakeLists.txt Overfull \hbox (0.91077pt too wide) in paragraph at lines 9427--9427 [] \OT1/cmtt/m/n/10.95 # cmake 2.8 workaround: gcc needs to be told to d o ANSI C11.[] [183] Overfull \hbox (49.52692pt too wide) in paragraph at lines 9429--9432 []\OT1/cmr/m/n/12 To com-pile Suite-Sparse:GraphBLAS with-out run-ning the de-m os, use [][]\OT1/cmtt/m/n/12 make library Overfull \hbox (5.06398pt too wide) in paragraph at lines 9433--9436 []\OT1/cmr/m/n/12 file, but these are meant only for code de-vel-op-ment of Sui te-Sparse:GraphBLAS Overfull \hbox (1.21198pt too wide) in paragraph at lines 9457--9460 \OT1/cmr/m/n/12 To in-stall the li-brary (typ-i-cally in [][]\OT1/cmtt/m/n/12 / usr/local/lib []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 /usr/local/include [184] Overfull \hbox (0.30112pt too wide) in paragraph at lines 9507--9514 \OT1/cmss/m/n/12 redislabs . com / redis-[]enterprise / technology / redisgraph /$[][]\OT1/cmr/m/n/12 ), a graph database mod- Overfull \hbox (36.16724pt too wide) in paragraph at lines 9507--9514 [][]$\OT1/cmss/m/n/10 https : / / redislabs . com / blog / new-[]redisgraph-[]1 -[]0-[]achieves-[]600x-[]faster-[]performance-[]graph-[]databases/$[][]\OT1/cmr /m/n/12 ). [185] (./GraphBLAS_UserGuide.bbl Underfull \hbox (badness 5696) in paragraph at lines 20--26 []\OT1/cmr/m/n/10.95 A. Bulu^^Xc and J. Gilbert. Par-al-lel sparse matrix-matr ix Underfull \hbox (badness 1210) in paragraph at lines 20--26 \OT1/cmr/m/n/10.95 mul-ti-pli-ca-tion and in-dex-ing: Im-ple-men-ta-tion and ex -per-i-ments. Underfull \hbox (badness 10000) in paragraph at lines 43--48 []\OT1/cmr/m/n/10.95 P. Burkhardt. Graph-ing tril-lions of tri-an- Underfull \hbox (badness 10000) in paragraph at lines 43--48 \OT1/cmr/m/n/10.95 gles. \OT1/cmr/m/it/10.95 In-for-ma-tion Vi-su-al-iza-tion\ OT1/cmr/m/n/10.95 , 16:157--166, 2016. Underfull \hbox (badness 2073) in paragraph at lines 60--67 []\OT1/cmr/m/n/10 Provides a ba-sic overview of many sparse ma-trix al-go- Underfull \hbox (badness 1859) in paragraph at lines 60--67 \OT1/cmr/m/n/10 rithms and a sim-ple sparse ma-trix data struc-ture. The Underfull \hbox (badness 6380) in paragraph at lines 70--75 []\OT1/cmr/m/n/10.95 T. A Davis. Cre-at-ing sparse finite-element ma-tri-ces i n Underfull \hbox (badness 5490) in paragraph at lines 70--75 \OT1/cmr/m/n/10.95 MAT-LAB. \OT1/cmr/m/it/10.95 Loren on the Art of MAT-LAB\OT 1/cmr/m/n/10.95 , Mar. 2007. Underfull \hbox (badness 5985) in paragraph at lines 70--75 \OT1/cmr/m/n/10.95 Loren Shure, ed-i-tor. Pub-lished by The Math-Works, Nat- [186] Underfull \hbox (badness 10000) in paragraph at lines 84--90 []\OT1/cmr/m/n/10.95 T. A. Davis. Al-go-rithm 9xx: Suite-Sparse:GraphBLAS: Underfull \hbox (badness 10000) in paragraph at lines 84--90 \OT1/cmr/m/n/10.95 graph al-go-rithms in the lan-guage of sparse lin-ear al-ge- Underfull \hbox (badness 2932) in paragraph at lines 84--90 \OT1/cmr/m/n/10.95 bra. \OT1/cmr/m/it/10.95 ACM Trans. on Math. Soft-ware\OT1/ cmr/m/n/10.95 , (to ap-pear), 2019. Underfull \hbox (badness 5924) in paragraph at lines 130--136 []\OT1/cmr/m/n/10.95 F. G. Gus-tavson. Two fast al-go-rithms for sparse ma- Underfull \hbox (badness 5231) in paragraph at lines 130--136 \OT1/cmr/m/n/10.95 tri-ces: Mul-ti-pli-ca-tion and per-muted trans-po-si-tion. \OT1/cmr/m/it/10.95 ACM Underfull \hbox (badness 5924) in paragraph at lines 130--136 \OT1/cmr/m/it/10.95 Trans-ac-tions on Math-e-mat-i-cal Soft-ware\OT1/cmr/m/n/10 .95 , 4(3):250--269, 1978. [187] Underfull \hbox (badness 4454) in paragraph at lines 147--152 []\OT1/cmr/m/n/10.95 J. Kep-ner. Graph-BLAS math-e-mat-ics. Tech-ni-cal re-po rt, Underfull \hbox (badness 4621) in paragraph at lines 147--152 \OT1/cmr/m/n/10.95 2017. [][]http://www.mit.edu/$\OMS/cmsy/m/n/10.95 ^^X$\OT1/ cmr/m/n/10.95 kepner/GraphBLAS/GraphBLAS- Underfull \hbox (badness 1540) in paragraph at lines 183--188 []\OT1/cmr/m/n/10.95 M. Luby. A sim-ple par-al-lel al-go-rithm for the max-i-m al in- Underfull \hbox (badness 4341) in paragraph at lines 183--188 \OT1/cmr/m/n/10.95 de-pen-dent set prob-lem. \OT1/cmr/m/it/10.95 SIAM J. Com-p ut.\OT1/cmr/m/n/10.95 , 15(4), 1986. Underfull \hbox (badness 1226) in paragraph at lines 191--196 []\OT1/cmr/m/n/10.95 A. J. Wa-then. Re-al-is-tic eigen-value bounds for the Ga lerkin Underfull \hbox (badness 6944) in paragraph at lines 191--196 \OT1/cmr/m/n/10.95 mass ma-trix. \OT1/cmr/m/it/10.95 IMA J. Nu-mer. Anal.\OT1/ cmr/m/n/10.95 , 7:449--457, 1987. [188] Underfull \hbox (badness 2205) in paragraph at lines 205--211 \OT1/cmr/m/n/10.95 S. Ra-ja-man-ickam. Fast lin-ear algebra-based tri-an-gle c ount- Underfull \hbox (badness 1783) in paragraph at lines 205--211 \OT1/cmr/m/it/10.95 treme Com-put-ing Con-fer-ence (HPEC)\OT1/cmr/m/n/10.95 , p ages 1--7, Sept 2017. ) [189] (./GraphBLAS_UserGuide.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb> Output written on GraphBLAS_UserGuide.pdf (189 pages, 744067 bytes). Transcript written on GraphBLAS_UserGuide.log. pdflatex GraphBLAS_UserGuide.tex This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./GraphBLAS_UserGuide.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/pdftex.def) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/svgnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/hyperref.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hpdftex.def (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amssymb.sty (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/amsfonts.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsmath.sty For additional information on amsmath, use the `?' option. (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amstext.sty (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty)) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty) (/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsopn.sty)) (/usr/share/texlive/texmf-dist/tex/latex/framed/framed.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdframed/mdframed.sty (/usr/share/texlive/texmf-dist/tex/latex/l3packages/xparse/xparse.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3.sty (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/expl3-code.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3kernel/l3pdfmode.def))) (/usr/share/texlive/texmf-dist/tex/latex/etoolbox/etoolbox.sty) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/zref-abspage.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/zref-base.sty)) (/usr/share/texlive/texmf-dist/tex/latex/needspace/needspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/mdframed/md-frame-0.mdf)) (./GraphBLAS_version.tex) (./GraphBLAS_UserGuide.aux) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (./GraphBLAS_UserGuide.out) (./GraphBLAS_UserGuide.out) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] (./GraphBLAS_UserGuide.toc [2] [3] [4] Overfull \hbox (3.4828pt too wide) in paragraph at lines 145--145 [][] [][][]\OT1/cmr/m/n/10.95 Performance of \OT1/cmss/m/n/10.95 GxB[]subassig n\OT1/cmr/m/n/10.95 , \OT1/cmss/m/n/10.95 GrB[]assign \OT1/cmr/m/n/10.95 and \O T1/cmss/m/n/10.95 GrB[]*[]setElement[][] [][] [5]) [6] (./GraphBLAS_API_version.tex) [7] (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Overfull \hbox (6.77888pt too wide) in paragraph at lines 138--142 []\OT1/cmr/m/n/12 New ex-ten-sions to Graph-BLAS in this ver-sion in-clude [][] \OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_set[]\OT1/ cmr/m/n/12 , [8] [9] Overfull \hbox (0.69284pt too wide) in paragraph at lines 235--240 []\OT1/cmr/m/it/12 Graph Al-go-rithms in the Lan-guage on Lin-ear Al-ge-bra\OT1 /cmr/m/n/12 , Kep-ner and Gilbert, [10] [11] [12] [13] [14] Overfull \hbox (8.66713pt too wide) in paragraph at lines 469--474 []\OT1/cmr/m/n/12 The Ac-cu-mu-la-tor Phase is fol-lowed by the Mask/Replace Ph ase, $[]$ Overfull \hbox (8.47243pt too wide) in paragraph at lines 545--545 [] \OT1/cmtt/m/n/10 p = C.pattern & T.pattern ; Z.matrix (p) = accum (C.mat rix (p), T.matrix (p));[] [15] [16] [17] Overfull \hbox (13.20271pt too wide) in paragraph at lines 646--649 \OT1/cmr/m/n/12 ANSI C. Yet C leaves some type-cast-ing un-de-fined. Suite-Spar se:GraphBLAS [18] [19] Overfull \hbox (19.49643pt too wide) in paragraph at lines 787--787 [] \OT1/cmtt/m/n/10 ... use features from version 1.4.0 of a specific GraphB LAS implementation[] [20] [21] Overfull \hbox (0.80347pt too wide) in paragraph at lines 914--921 \OT1/cmr/m/n/12 namely: [][]\OT1/cmtt/m/n/12 GrB_*_nvals[]\OT1/cmr/m/n/12 , [][ ]\OT1/cmtt/m/n/12 GrB_*_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_*_extractTuples[]\OT1/cmr/m/n/12 , and [22] [23] [24] Overfull \hbox (16.27414pt too wide) in paragraph at lines 1018--1029 \OT1/cmr/m/n/12 spe-cific ob-jects, [][]\OT1/cmtt/m/n/12 GrB_*_nvals[]\OT1/cmr/ m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_*_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/ cmtt/m/n/12 GrB_*_extractTuples[]\OT1/cmr/m/n/12 , [25] [26] [27] [28] Overfull \hbox (3.67369pt too wide) in paragraph at lines 1183--1204 [] Overfull \hbox (5.08691pt too wide) in paragraph at lines 1215--1219 []\OT1/cmr/bx/n/12 SPEC: \OT1/cmr/m/n/12 Suite-Sparse:GraphBLAS pre-de-fines al l unique monoids and semir- [29] [30] [31] Overfull \hbox (3.28505pt too wide) in paragraph at lines 1393--1396 [][]\OT1/cmtt/m/n/12 GxB_Type_size (&s, GrB_INT32) []\OT1/cmr/m/n/12 sets [][]\ OT1/cmtt/m/n/12 s []\OT1/cmr/m/n/12 to 4, the same as [][]\OT1/cmtt/m/n/12 size of(int32_t)[]\OT1/cmr/m/n/12 . [32] [33] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1455. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1455. [34] Overfull \hbox (1.92638pt too wide) in paragraph at lines 1543--1543 []\OT1/cmtt/m/n/10 GrB_Info GrB_UnaryOp_new // create a new user-def ined unary operator[] [35] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1577. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1577. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1600. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1600. [36] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1654. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1654. Overfull \hbox (1.14636pt too wide) in paragraph at lines 1672--1703 [][] [37] [38] Overfull \hbox (10.58614pt too wide) in paragraph at lines 1781--1790 \OT1/cmr/m/n/12 XOR op-er-a-tors. With-out the [][]\OT1/cmtt/m/n/12 _$\OML/cmm/ m/it/12 T$ []\OT1/cmr/m/n/12 suf-fix, the three op-er-a-tors [][]\OT1/cmtt/m/n/ 12 GrB_LOR[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_LAND[]\OT1/cmr/m/n/12 , [39] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1876. [40] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1900. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 1924. [41] Overfull \hbox (28.54279pt too wide) in paragraph at lines 1979--1979 []\OT1/cmr/bx/n/14.4 SuiteSparse:GraphBLAS se-lect op-er-a-tors: \OT1/cmss/m/n/ 14.4 GxB[]SelectOp Overfull \hbox (8.99652pt too wide) in paragraph at lines 2005--2005 [] \OT1/cmtt/m/n/10 const void *x, // value of A(i,j), or NULL if f is type-generic[] [42] [43] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 2104. [44] Overfull \hbox (0.52374pt too wide) in paragraph at lines 2186--2206 [][] [45] [46] [47] Overfull \hbox (14.0537pt too wide) in paragraph at lines 2388--2392 \OT1/cmr/m/n/12 This count ex-cludes re-dun-dant Boolean op-er-a-tors (for ex-a m-ple [][]\OT1/cmtt/m/n/12 GrB_TIMES_BOOL [48] [49] Overfull \hbox (7.17633pt too wide) in paragraph at lines 2473--2473 [] \OT1/cmtt/m/n/10 GrB_BinaryOp *multiply, // returns multiply oper ator of the semiring[] [50] [51] Overfull \hbox (12.47293pt too wide) in paragraph at lines 2585--2589 \OT1/cmr/m/n/12 of the given type. This is anal-o-gous to MAT-LAB state-ment [] []\OT1/cmtt/m/n/12 v = sparse (n,1)[]\OT1/cmr/m/n/12 , [52] Overfull \hbox (32.7161pt too wide) in paragraph at lines 2647--2654 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sion of [][]\OT1/cmtt/m/n/12 v []\ OT1/cmr/m/n/12 do not change. In Suite-Sparse:GraphBLAS, [53] Overfull \hbox (33.82916pt too wide) in paragraph at lines 2731--2733 [][][]\OT1/cmtt/m/n/12 GxB_Vector_type []\OT1/cmr/m/n/12 re-turns the type of a vec-tor. Anal-o-gous to [][]\OT1/cmtt/m/n/12 type = class (v) [54] Overfull \hbox (5.42024pt too wide) in paragraph at lines 2791--2796 \OT1/cmr/m/n/12 op-er-a-tion is ex-actly like set-ting a sin-gle en-try in an [ ][]\OT1/cmtt/m/n/12 n[]\OT1/cmr/m/n/12 -by-1 ma-trix, [][]\OT1/cmtt/m/n/12 A(i, 0) = x[]\OT1/cmr/m/n/12 , [55] Overfull \hbox (22.40071pt too wide) in paragraph at lines 2814--2823 [][][]\OT1/cmtt/m/n/12 GrB_Vector_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a vec-tor, [][]\OT1/cmtt/m/n/12 x = v(i)[]\OT1/cmr/m/n/12 . [56] [57] [58] Overfull \hbox (7.00394pt too wide) in paragraph at lines 3025--3032 \OT1/cmr/m/n/12 MAT-LAB. The type and di-men-sions of [][]\OT1/cmtt/m/n/12 A [] \OT1/cmr/m/n/12 do not change. In SuiteSparse:Graph- Overfull \hbox (15.03809pt too wide) in paragraph at lines 3049--3051 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows []\OT1/cmr/m/n/12 re-turns the num-ber of rows of a ma-trix ([][]\OT1/cmtt/m/n/12 nrow=size(A,1) [59] Overfull \hbox (39.81706pt too wide) in paragraph at lines 3069--3071 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_ncols []\OT1/cmr/m/n/12 re-turns the num-ber of columns of a ma-trix ([][]\OT1/cmtt/m/n/12 ncols=size(A,2) [60] [61] [62] [63] Overfull \hbox (11.6521pt too wide) in paragraph at lines 3280--3293 [][]\OT1/cmtt/m/n/12 GrB_Matrix_nrows[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G xB_Matrix_type[]\OT1/cmr/m/n/12 , and of course [][]\OT1/cmtt/m/n/12 GrB_Matrix _setElement Overfull \hbox (21.81322pt too wide) in paragraph at lines 3315--3317 [][][]\OT1/cmtt/m/n/12 GrB_Matrix_extractElement []\OT1/cmr/m/n/12 ex-tracts a sin-gle en-try from a ma-trix [][]\OT1/cmtt/m/n/12 x=A(i,j)[]\OT1/cmr/m/n/12 . [64] Overfull \hbox (39.24196pt too wide) in paragraph at lines 3384--3393 []\OT1/cmr/m/n/12 The num-ber of tu-ples in the ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/n/12 is given by [][]\OT1/cmtt/m/n/12 GrB_Matrix_nvals(&anvals,A)[ ]\OT1/cmr/m/n/12 . [65] [66] [67] [68] [69] Overfull \hbox (4.20209pt too wide) in paragraph at lines 3583--3589 [][]\OT1/cmtt/m/n/12 desc [GrB_INP1] []\OT1/cmr/m/n/12 mod-i-fies the ma-trix p a-ram-e-ter and [][]\OT1/cmtt/m/n/12 desc [GrB_INP0] Overfull \hbox (7.54486pt too wide) in paragraph at lines 3611--3620 [][][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 : a heap-based method, com -put-ing [][]\OT1/cmtt/m/n/12 C(:,j)=A*B(:,j) [70] [71] Overfull \hbox (17.0722pt too wide) in paragraph at lines 3682--3687 [][][]\OT1/cmtt/m/n/12 GrB_Descriptor_set []\OT1/cmr/m/n/12 sets a de-scrip-tor field ([][]\OT1/cmtt/m/n/12 GrB_OUTP[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 G rB_MASK[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_INP0[]\OT1/cmr/m/n/12 , Overfull \hbox (6.71817pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_INP1[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 GxB_Ax B_METHOD[]\OT1/cmr/m/n/12 ) to a par-tic-u-lar value ([][]\OT1/cmtt/m/n/12 GxB_ DEFAULT[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_SCMP[]\OT1/cmr/m/n/12 , Overfull \hbox (18.71361pt too wide) in paragraph at lines 3682--3687 [][]\OT1/cmtt/m/n/12 GrB_TRAN[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_REPLA CE[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_GUSTAVSON[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_AxB_HEAP[]\OT1/cmr/m/n/12 , or [][]\OT1/cmtt/m/n/12 G xB_AxB_DOT[]\OT1/cmr/m/n/12 ). Underfull \hbox (badness 2020) in paragraph at lines 3701--3705 [][][]\OT1/cmtt/m/n/10.95 GrB_REPLACE[]\OT1/cmr/m/n/10.95 : Af-ter com-put-ing Underfull \hbox (badness 2922) in paragraph at lines 3701--3705 []$\OT1/cmr/m/n/10.95 , the out-put \OT1/cmr/bx/n/10.95 C \OT1/cmr/m/n/10.95 is Underfull \hbox (badness 2035) in paragraph at lines 3701--3705 \OT1/cmr/m/n/10.95 cleared of all en-tries. Then Underfull \hbox (badness 4981) in paragraph at lines 3713--3717 \OT1/cmr/m/n/10.95 op-er-a-tion, while [][]\OT1/cmtt/m/n/10.95 Mask(i,j)=1 Underfull \hbox (badness 3838) in paragraph at lines 3723--3726 [][][]\OT1/cmtt/m/n/10.95 GrB_TRAN[]\OT1/cmr/m/n/10.95 : The first in-put is Underfull \hbox (badness 6252) in paragraph at lines 3741--3743 \OT1/cmr/m/n/10.95 method is used to com-pute Overfull \hbox (58.92297pt too wide) in paragraph at lines 3689--3747 [] Underfull \hbox (badness 10000) in paragraph at lines 3689--3747 [72] [73] [74] Overfull \hbox (14.24648pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 H = G ; // valid; creates a 2nd handle o f the same object[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 3868--3868 [] \OT1/cmtt/m/n/10 GrB_free (&G) ; // valid; G is freed and set to NULL; H now undefined[] [75] Overfull \hbox (0.7007pt too wide) in paragraph at lines 3889--3897 []\OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes two type-generic meth-ods, [] []\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/n/12 and Overfull \hbox (12.98712pt too wide) in paragraph at lines 3906--3911 [][][]\OT1/cmtt/m/n/12 GxB_set (GrB_Matrix A, field, value) []\OT1/cmr/m/n/12 p ro-vides hints to Suite-Sparse: Overfull \hbox (31.22649pt too wide) in paragraph at lines 3912--3918 [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , just with a generic name. Ex-cept for [][]\OT1/cmtt/m/n/12 GxB_AxB_METHOD[]\OT1/cmr/m/n/12 , Overfull \hbox (1.08037pt too wide) in paragraph at lines 3929--3931 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Matrix A, field, &value) []\OT1/cmr/m/n/12 re-trieves the cur-rent value Overfull \hbox (4.81274pt too wide) in paragraph at lines 3932--3934 [][][]\OT1/cmtt/m/n/12 GxB_get (GrB_Descriptor desc, field, &value) []\OT1/cmr/ m/n/12 re-trieves the value [76] Overfull \hbox (11.60793pt too wide) in paragraph at lines 3974--3981 \OT1/cmr/m/n/12 Graph-BLAS API Spec-i-fi-ca-tion, where the breadth-first searc h [][]\OT1/cmtt/m/n/12 BFS []\OT1/cmr/m/n/12 uses [][]\OT1/cmtt/m/n/12 GrB_vxm [77] Overfull \hbox (14.33583pt too wide) in paragraph at lines 3999--4005 \OT1/cmr/m/n/12 can be com-piled with [][]\OT1/cmtt/m/n/12 -DBYCOL[]\OT1/cmr/m/ n/12 , which changes the de-fault for-mat to [][]\OT1/cmtt/m/n/12 GxB_BY_COL[]\ OT1/cmr/m/n/12 , [78] Overfull \hbox (3.22508pt too wide) in paragraph at lines 4053--4057 []\OT1/cmr/m/n/12 If a ma-trix is cur-rently hy-per-sparse, it can be con-verte d to non-hypersparse [79] Overfull \hbox (18.1564pt too wide) in paragraph at lines 4082--4087 [][]\OT1/cmtt/m/n/12 GxB_BY_COL []\OT1/cmr/m/n/12 for-mat, as de-ter-mined by t he last call to [][]\OT1/cmtt/m/n/12 GxB_set(GxB_FORMAT,...) Overfull \hbox (3.83885pt too wide) in paragraph at lines 4092--4097 \OT1/cmr/m/n/12 type of the [][]\OT1/cmtt/m/n/12 field []\OT1/cmr/m/n/12 pa-ram -e-ter for the sec-ond ar-gu-ment of [][]\OT1/cmtt/m/n/12 GxB_set []\OT1/cmr/m/ n/12 and [][]\OT1/cmtt/m/n/12 GxB_get[]\OT1/cmr/m/n/12 , Overfull \hbox (8.99652pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_HYPER, // defines switch to hypersparse format (a double value)[] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4109--4109 [] \OT1/cmtt/m/n/10 GxB_MODE, // mode passed to GrB_init (blocking or non-blocking)[] [80] [81] [82] Overfull \hbox (35.86514pt too wide) in paragraph at lines 4247--4252 \OT1/cmr/m/n/12 al-lelism. In this case, the [][]\OT1/cmtt/m/n/12 GxB_THREADING []\OT1/cmr/m/n/12 op-tion will re-turn ei-ther [][]\OT1/cmtt/m/n/12 GxB_THREAD _NONE [83] Overfull \hbox (44.81151pt too wide) in paragraph at lines 4337--4342 \OT1/cmr/m/n/12 con-sis-tent with the other us-ages of this generic func-tion. Un-like [][]\OT1/cmtt/m/n/12 GrB_Descriptor_set[]\OT1/cmr/m/n/12 , [84] Overfull \hbox (14.24648pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (s == GxB_BY_COL) printf ("all new matrices are store d by column\n") :[] Overfull \hbox (24.74638pt too wide) in paragraph at lines 4384--4384 [] \OT1/cmtt/m/n/10 if (mode == GrB_BLOCKING) printf ("GrB_init(GrB_BLOCKING ) was called.\n") :[] [85] [86] [87] [88] Overfull \hbox (2.24268pt too wide) in paragraph at lines 4510--4517 \OT1/cmr/m/n/12 MATLAB uses a colon no-ta-tion to in-dex into ma-tri-ces, such as [][]\OT1/cmtt/m/n/12 C=A(2:4,3:8)[]\OT1/cmr/m/n/12 , [89] Overfull \hbox (5.33707pt too wide) in paragraph at lines 4570--4573 []\OT1/cmr/m/n/12 The [][]\OT1/cmtt/m/n/12 GrB_extract[]\OT1/cmr/m/n/12 , [][]\ OT1/cmtt/m/n/12 GrB_assign[]\OT1/cmr/m/n/12 , and [][]\OT1/cmtt/m/n/12 GrB_suba ssign []\OT1/cmr/m/n/12 op-er-a-tions (de-scribed Overfull \hbox (6.98373pt too wide) in paragraph at lines 4600--4607 \OT1/cmr/m/n/12 the spe-cial value [][]\OT1/cmtt/m/n/12 ni = GxB_RANGE[]\OT1/cm r/m/n/12 . The be-gin-ning in-dex is [][]\OT1/cmtt/m/n/12 I[GxB_BEGIN] [90] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4644--4644 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i <= I [GxB_END] ; i + = I [GxB_INC])[] [91] Overfull \hbox (22.62135pt too wide) in paragraph at lines 4690--4690 [] \OT1/cmtt/m/n/10 for (int64_t i = I [GxB_BEGIN] ; i >= I [GxB_END] ; i - = I [GxB_INC])[] [92] [93] [94] Overfull \hbox (2.05571pt too wide) in paragraph at lines 4874--4890 [][] Underfull \hbox (badness 10000) in paragraph at lines 4874--4890 [95] [96] Overfull \hbox (4.29825pt too wide) in paragraph at lines 4959--4962 [][][]\OT1/cmtt/m/n/12 A.pattern[]\OT1/cmr/m/n/12 : a log-i-cal ma-trix hold-in g the pat-tern; [][]\OT1/cmtt/m/n/12 A.pattern(i,j)=true [97] Overfull \hbox (24.74638pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.matrix (:,:) = identity ; % the identity of th e semiring's monoid[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 T.class = multiply.ztype ; % the ztype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 A = cast (A.matrix, multiply.xtype) ; % the xtype of the s emiring's multiply op[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5029--5029 []\OT1/cmtt/m/n/10 B = cast (B.matrix, multiply.ytype) ; % the ytype of the s emiring's multiply op[] [98] Overfull \hbox (28.8088pt too wide) in paragraph at lines 5058--5067 \OT1/cmr/m/n/12 SuiteSparse:GraphBLAS in-cludes three dif-fer-ent meth-ods for com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B[]\OT1/cmr/m/n/12 , [99] Overfull \hbox (54.12108pt too wide) in paragraph at lines 5134--5134 [] \OT1/cmtt/m/n/10 if M is present, or if A or B have a single column, or if B or A are dense:[] [100] [101] [102] Overfull \hbox (16.83702pt too wide) in paragraph at lines 5289--5293 [][]\OT1/cmtt/m/n/12 GrB_vxm []\OT1/cmr/m/n/12 in-stead of [][]\OT1/cmtt/m/n/12 GrB_mxv[]\OT1/cmr/m/n/12 , since the de-fault for-mat in Suite-Sparse:GraphBLA S [103] [104] Overfull \hbox (3.59013pt too wide) in paragraph at lines 5376--5382 \OT1/cmr/m/n/12 side the out-put ma-trix [][]\OT1/cmtt/m/n/12 C []\OT1/cmr/m/n/ 12 or vec-tor [][]\OT1/cmtt/m/n/12 w[]\OT1/cmr/m/n/12 , or for the the first ca ll to [][]\OT1/cmtt/m/n/12 GrB_mxm(C,...) [105] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5411--5416 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 $ \OT1/cmr/m/n/12 de-note the bi-nary op-er-a-tor to be used. The com-pu-ta-tio n $[]$ [106] [107] [108] Overfull \hbox (4.8362pt too wide) in paragraph at lines 5552--5562 []\OT1/cmr/m/n/12 Let $\OMS/cmsy/m/n/12 ^^H$ \OT1/cmr/m/n/12 de-note the bi-nar y op-er-a-tor to be used. The com-pu-ta-tion $[]$ [109] [110] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = A.pattern & ~B.pattern ; T.matrix (p) = cast (A.mat rix (p), add.ztype) ;[] Overfull \hbox (35.24629pt too wide) in paragraph at lines 5694--5694 [] \OT1/cmtt/m/n/10 p = ~A.pattern & B.pattern ; T.matrix (p) = cast (B.mat rix (p), add.ztype) ;[] [111] [112] [113] Overfull \hbox (28.4599pt too wide) in paragraph at lines 5828--5835 [][][]\OT1/cmtt/m/n/12 GrB_Col_extract []\OT1/cmr/m/n/12 ex-tracts a sub-vec-to r from a ma-trix, iden-ti-cal to [][]\OT1/cmtt/m/n/12 t = A (I,j) [114] [115] Overfull \hbox (1.92638pt too wide) in paragraph at lines 5920--5920 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] Overfull \hbox (14.08577pt too wide) in paragraph at lines 5929--5940 [][] Overfull \hbox (16.61003pt too wide) in paragraph at lines 5957--5961 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, [][]\OT1/cmtt/m/n/12 GxB_Matrix _subassign[]\OT1/cmr/m/n/12 , the sub-ma-trix [][]\OT1/cmtt/m/n/12 C(I,J) [116] Overfull \hbox (11.08006pt too wide) in paragraph at lines 5978--5982 []\OT1/cmr/m/n/12 For sub-ma-trix as-sign-ment, $[]$ is com-puted, where [117] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6042--6042 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(I ,j), unused if NULL[] Overfull \hbox (17.08905pt too wide) in paragraph at lines 6044--6052 \OT1/cmr/m/n/12 col-umn in-dex (and thus [][]\OT1/cmtt/m/n/12 nj=1[]\OT1/cmr/m/ n/12 ), and where all ma-tri-ces in [][]\OT1/cmtt/m/n/12 GxB_Matrix_subassign Overfull \hbox (1.92638pt too wide) in paragraph at lines 6079--6079 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,J), unused if NULL[] [118] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6098. [119] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6129. Overfull \hbox (1.92638pt too wide) in paragraph at lines 6148--6148 [] \OT1/cmtt/m/n/10 const GrB_Matrix Mask, // optional mask for C(I ,J), unused if NULL[] [120] [121] [122] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6313--6313 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(: ,j), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6327--6330 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [123] Overfull \hbox (1.92638pt too wide) in paragraph at lines 6351--6351 [] \OT1/cmtt/m/n/10 const GrB_Vector mask, // optional mask for C(i ,:), unused if NULL[] Overfull \hbox (59.74896pt too wide) in paragraph at lines 6365--6368 []\OT1/cmr/bx/n/12 Performance con-sid-er-a-tions:[] [][]\OT1/cmtt/m/n/12 GrB_ Col_assign []\OT1/cmr/m/n/12 is much faster than [][]\OT1/cmtt/m/n/12 GrB_Row_a ssign [124] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6371. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 6402. [125] [126] Overfull \hbox (6.40782pt too wide) in paragraph at lines 6501--6512 [][]\OT1/cmtt/m/n/12 assign []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 subassig n[]\OT1/cmr/m/n/12 , re-sults are not de-fined for [][]\OT1/cmtt/m/n/12 GrB_Mat rix_*assign[]\OT1/cmr/m/n/12 , [127] Overfull \hbox (10.16943pt too wide) in paragraph at lines 6552--6559 []\OT1/cmr/m/n/12 This no-ta-tion does not in-clude the de-tails of the [][]\OT 1/cmtt/m/n/12 GrB_SCMP []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 GrB_REPLACE [128] Overfull \hbox (20.92456pt too wide) in paragraph at lines 6636--6682 [][] Underfull \hbox (badness 10000) in paragraph at lines 6636--6682 [129] [130] [131] [132] [133] Overfull \hbox (0.92876pt too wide) in paragraph at lines 6876--6878 []\OT1/cmr/m/n/12 The fol-low-ing guide-lines should be con-sid-ered when us-in g [][]\OT1/cmtt/m/n/12 GxB_subassign[]\OT1/cmr/m/n/12 , [134] Overfull \hbox (11.91185pt too wide) in paragraph at lines 6920--6937 \OT1/cmr/m/n/12 by 3 mil-lion, with 14.3 mil-lion nonze-ros. With the vec-tors [][]\OT1/cmtt/m/n/12 I=randperm(n,5500) [135] [136] [137] [138] [139] Overfull \hbox (1.92638pt too wide) in paragraph at lines 7142--7142 []\OT1/cmtt/m/n/10 GrB_Info GxB_select // C = accum (C, o p(A,k)) or op(A',k)[] Overfull \hbox (18.40335pt too wide) in paragraph at lines 7182--7201 [][] [140] [141] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7214. [142] Package hyperref Warning: Token not allowed in a PDF string (PDFDocEncoding): (hyperref) removing `math shift' on input line 7262. 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[144] Overfull \hbox (9.00838pt too wide) in paragraph at lines 7372--7379 [][][]\OT1/cmtt/m/n/12 GrB_transpose []\OT1/cmr/m/n/12 trans-poses a ma-trix [] []\OT1/cmtt/m/n/12 A[]\OT1/cmr/m/n/12 , just like the ar-ray trans-pose [][]\OT 1/cmtt/m/n/12 T = A.' [145] Overfull \hbox (10.46268pt too wide) in paragraph at lines 7417--7423 []\OT1/cmr/m/n/12 Since the in-put ma-trix [][]\OT1/cmtt/m/n/12 A []\OT1/cmr/m/ n/12 is trans-posed by the de-scrip-tor, SuiteSparse:Graph- [146] Overfull \hbox (12.44847pt too wide) in paragraph at lines 7479--7481 [][][]\OT1/cmtt/m/n/12 GxB_kron []\OT1/cmr/m/n/12 com-putes the Kro-necker prod -uct, $[]$ where [147] Overfull \hbox (2.84326pt too wide) in paragraph at lines 7517--7524 []\OT1/cmr/m/n/12 The 9 dif-fer-ent ob-jects han-dled by Suite-Sparse:GraphBLAS are all opaque, Overfull \hbox (20.73615pt too wide) in paragraph at lines 7517--7524 [][]\OT1/cmtt/m/n/12 GrB_Matrix_extractTuples[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/ m/n/12 GrB_Matrix_extractElement[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GxB_Ma trix_type[]\OT1/cmr/m/n/12 , [148] Overfull \hbox (1.52788pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 As a re-sult, the ex-act con-tent and for-mat of what is printe d is implementation- Overfull \hbox (7.41396pt too wide) in paragraph at lines 7603--7611 \OT1/cmr/m/n/12 dependent, and will change from ver-sion to ver-sion of Suite-S parse:GraphBLAS. [149] Overfull \hbox (59.93402pt too wide) in paragraph at lines 7670--7672 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Type_fprint (GrB_BOOL , "boolean type", GxB_COMPLETE, f) [150] Overfull \hbox (22.884pt too wide) in paragraph at lines 7690--7693 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_UnaryOp_fprint (GrB_L NOT, "not", GxB_COMPLETE, f) Overfull \hbox (66.10902pt too wide) in paragraph at lines 7711--7714 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_BinaryOp_fprint (GrB_ PLUS_FP64, "plus", GxB_COMPLETE, f) Overfull \hbox (35.23401pt too wide) in paragraph at lines 7732--7735 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_SelectOp_fprint (GxB_ TRIL, "tril", GxB_COMPLETE, f) [151] Overfull \hbox (35.23401pt too wide) in paragraph at lines 7753--7758 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Monoid_fprint (GxB_PL US_FP64_MONOID, "plus monoid", Overfull \hbox (22.884pt too wide) in paragraph at lines 7775--7779 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Semiring_fprint (GxB_ PLUS_TIMES_FP64, "standard", Overfull \hbox (41.40901pt too wide) in paragraph at lines 7796--7799 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Descriptor_fprint (d, "descriptor", GxB_COMPLETE, f) [152] Overfull \hbox (24.38643pt too wide) in paragraph at lines 7817--7820 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Matrix_fprint (A, "my matrix", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints Overfull \hbox (24.38643pt too wide) in paragraph at lines 7838--7841 []\OT1/cmr/m/n/12 For ex-am-ple, [][]\OT1/cmtt/m/n/12 GxB_Vector_fprint (v, "my vector", GxB_SHORT, f) []\OT1/cmr/m/n/12 prints [153] [154] Overfull \hbox (11.36362pt too wide) in paragraph at lines 7907--7914 [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_B inaryOp_new[]\OT1/cmr/m/n/12 , [][]\OT1/cmtt/m/n/12 GrB_Monoid_new[]\OT1/cmr/m/ n/12 , and [][]\OT1/cmtt/m/n/12 GrB_Semiring_new[]\OT1/cmr/m/n/12 . [155] Overfull \hbox (18.8768pt too wide) in paragraph at lines 8011--8017 []\OT1/cmr/m/n/12 Some user def-i-ni-tions such as the [][]\OT1/cmtt/m/n/12 sta tic inline []\OT1/cmr/m/n/12 func-tions [][]\OT1/cmtt/m/n/12 my_complex_plus [156] [157] Overfull \hbox (42.06075pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 In ei-ther case, when the user ap-pli-ca-tion is fin-ished, it can do [][]\OT1/cmtt/m/n/12 GrB_free(My_Complex)[]\OT1/cmr/m/n/12 . Overfull \hbox (60.34145pt too wide) in paragraph at lines 8121--8126 \OT1/cmr/m/n/12 This safely does noth-ing if [][]\OT1/cmtt/m/n/12 My_Complex [] \OT1/cmr/m/n/12 is de-fined at compile-time with [][]\OT1/cmtt/m/n/12 GxB_Type_ define[]\OT1/cmr/m/n/12 , Overfull \hbox (47.07416pt too wide) in paragraph at lines 8127--8137 \OT1/cmr/m/n/12 ma-trix, com-put-ing [][]\OT1/cmtt/m/n/12 C=A*B []\OT1/cmr/m/n/ 12 via [][]\OT1/cmtt/m/n/12 GrB_mxm []\OT1/cmr/m/n/12 with the pre-compiled [][ ]\OT1/cmtt/m/n/12 My_Complex_plus_times [158] [159] Overfull \hbox (20.94887pt too wide) in paragraph at lines 8151--8158 []\OT1/cmr/m/n/12 An ex-am-ple macro name con-flict oc-curs in the [][]\OT1/cmt t/m/n/12 User/Example/my_complex.m4 [160] Overfull \hbox (17.79352pt too wide) in paragraph at lines 8205--8212 \OT1/cmr/m/n/12 a type when Suite-Sparse:GraphBLAS is com-piled. In-stead of th e [][]\OT1/cmtt/m/n/12 sizeof(ctype) Overfull \hbox (42.33655pt too wide) in paragraph at lines 8205--8212 []\OT1/cmr/m/n/12 sec-ond pa-ram-e-ter of [][]\OT1/cmtt/m/n/12 GrB_Type_new[]\O T1/cmr/m/n/12 , the sec-ond pa-ram-e-ter [][]\OT1/cmtt/m/n/12 ctype []\OT1/cmr/ m/n/12 of [][]\OT1/cmtt/m/n/12 GxB_Type_define [161] [162] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8352--8352 []\OT1/cmtt/m/n/10 GxB_Semiring_define(GrB_Semiring semiring, GrB_Monoid add, G rB_BinaryOp mult) ;[] Overfull \hbox (22.70183pt too wide) in paragraph at lines 8354--8361 \OT1/cmr/m/n/12 ram-e-ter is a [][]\OT1/cmtt/m/n/12 GrB_Monoid []\OT1/cmr/m/n/1 2 that is ei-ther pre-de-fined (such as [][]\OT1/cmtt/m/n/12 GxB_PLUS_TIMES_FP6 4[]\OT1/cmr/m/n/12 ) [163] [164] [165] [166] Overfull \hbox (35.24629pt too wide) in paragraph at lines 8565--8565 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] [167] Overfull \hbox (12.42628pt too wide) in paragraph at lines 8615--8615 [] \OT1/cmtt/m/n/10 GrB_vxm (neighbor_max, candidates, NULL, maxSelect1s t, prob, A, r_desc) ;[] Overfull \hbox (1.92638pt too wide) in paragraph at lines 8615--8615 [] \OT1/ cmtt/m/n/10 NULL) ;[] Overfull \hbox (0.18333pt too wide) in paragraph at lines 8618--8628 \OT1/cmr/m/n/12 col-umn [][]\OT1/cmtt/m/n/12 A(:,j) []\OT1/cmr/m/n/12 is the ad -ja-cency of node [][]\OT1/cmtt/m/n/12 j[]\OT1/cmr/m/n/12 , and the dot prod-uc t [][]\OT1/cmtt/m/n/12 prob'*A(:,j) [168] [169] [170] [171] [172] [173] Overfull \hbox (24.54538pt too wide) in paragraph at lines 8884--8891 \OT1/cmr/m/n/12 ca-tion to con-struct the tu-ple list, and is al-most as fast a s us-ing [][]\OT1/cmtt/m/n/12 GrB_Matrix_build[]\OT1/cmr/m/n/12 . Overfull \hbox (3.74657pt too wide) in paragraph at lines 8919--8919 [] \OT1/cmtt/m/n/10 GrB_Matrix_setElement (F, em (krow,kcol) , krow, kcol) ;[] [174] [175] [176] [177] [178] Overfull \hbox (32.48866pt too wide) in paragraph at lines 9172--9188 [][] Underfull \hbox (badness 10000) in paragraph at lines 9172--9188 [179] Overfull \hbox (21.90607pt too wide) in paragraph at lines 9210--9210 []\OT1/cmr/bx/n/14.4 User ap-pli-ca-tions us-ing OpenMP or POSIX pthreads Overfull \hbox (4.40424pt too wide) in paragraph at lines 9214--9220 \OT1/cmr/m/n/12 Two ex-am-ple demo pro-grams are in-cluded that il-lus-trate ho w a multi-threaded [180] Overfull \hbox (69.41573pt too wide) in paragraph at lines 9269--9269 []\OT1/cmr/bx/n/17.28 Compiling and In-stalling Suite-Sparse:GraphBLAS [181] Overfull \hbox (5.3059pt too wide) in paragraph at lines 9322--9329 \OT1/cmr/m/n/12 pthreads. If OpenMP is present, it uses OpenMP crit-i-cal sec-t ions for [][]\OT1/cmtt/m/n/12 GrB_wait Overfull \hbox (0.44614pt too wide) in paragraph at lines 9356--9358 []\OT1/cmr/m/n/12 no user thread-ing: com-pile with [][]\OT1/cmtt/m/n/12 cmake -DUSER_NONE=1[]\OT1/cmr/m/n/12 . \OT1/cmr/bx/n/12 Graph-BLAS Overfull \hbox (9.50793pt too wide) in paragraph at lines 9373--9376 [][]\OT1/cmtt/m/n/12 GxB_BY_ROW []\OT1/cmr/m/n/12 for-mat. You can change the d e-fault at com-pile time to [][]\OT1/cmtt/m/n/12 GxB_BY_COL [182] Overfull \hbox (52.64896pt too wide) in paragraph at lines 9389--9389 [] \OT1/cmtt/m/n/10.95 if (s == GxB_BY_COL) printf ("all new matrices are st ored by column\n") :[] Overfull \hbox (3.09839pt too wide) in paragraph at lines 9404--9410 \OT1/cmr/m/n/12 Then do [][]\OT1/cmtt/m/n/12 make []\OT1/cmr/m/n/12 in the [][] \OT1/cmtt/m/n/12 build []\OT1/cmr/m/n/12 di-rec-tory. If this still fails, see the [][]\OT1/cmtt/m/n/12 CMakeLists.txt Overfull \hbox (0.91077pt too wide) in paragraph at lines 9427--9427 [] \OT1/cmtt/m/n/10.95 # cmake 2.8 workaround: gcc needs to be told to d o ANSI C11.[] [183] Overfull \hbox (49.52692pt too wide) in paragraph at lines 9429--9432 []\OT1/cmr/m/n/12 To com-pile Suite-Sparse:GraphBLAS with-out run-ning the de-m os, use [][]\OT1/cmtt/m/n/12 make library Overfull \hbox (5.06398pt too wide) in paragraph at lines 9433--9436 []\OT1/cmr/m/n/12 file, but these are meant only for code de-vel-op-ment of Sui te-Sparse:GraphBLAS Overfull \hbox (1.21198pt too wide) in paragraph at lines 9457--9460 \OT1/cmr/m/n/12 To in-stall the li-brary (typ-i-cally in [][]\OT1/cmtt/m/n/12 / usr/local/lib []\OT1/cmr/m/n/12 and [][]\OT1/cmtt/m/n/12 /usr/local/include [184] Overfull \hbox (0.30112pt too wide) in paragraph at lines 9507--9514 \OT1/cmss/m/n/12 redislabs . com / redis-[]enterprise / technology / redisgraph /$[][]\OT1/cmr/m/n/12 ), a graph database mod- Overfull \hbox (36.16724pt too wide) in paragraph at lines 9507--9514 [][]$\OT1/cmss/m/n/10 https : / / redislabs . com / blog / new-[]redisgraph-[]1 -[]0-[]achieves-[]600x-[]faster-[]performance-[]graph-[]databases/$[][]\OT1/cmr /m/n/12 ). [185] (./GraphBLAS_UserGuide.bbl Underfull \hbox (badness 5696) in paragraph at lines 20--26 []\OT1/cmr/m/n/10.95 A. Bulu^^Xc and J. Gilbert. Par-al-lel sparse matrix-matr ix Underfull \hbox (badness 1210) in paragraph at lines 20--26 \OT1/cmr/m/n/10.95 mul-ti-pli-ca-tion and in-dex-ing: Im-ple-men-ta-tion and ex -per-i-ments. Underfull \hbox (badness 10000) in paragraph at lines 43--48 []\OT1/cmr/m/n/10.95 P. Burkhardt. Graph-ing tril-lions of tri-an- Underfull \hbox (badness 10000) in paragraph at lines 43--48 \OT1/cmr/m/n/10.95 gles. \OT1/cmr/m/it/10.95 In-for-ma-tion Vi-su-al-iza-tion\ OT1/cmr/m/n/10.95 , 16:157--166, 2016. Underfull \hbox (badness 2073) in paragraph at lines 60--67 []\OT1/cmr/m/n/10 Provides a ba-sic overview of many sparse ma-trix al-go- Underfull \hbox (badness 1859) in paragraph at lines 60--67 \OT1/cmr/m/n/10 rithms and a sim-ple sparse ma-trix data struc-ture. The Underfull \hbox (badness 6380) in paragraph at lines 70--75 []\OT1/cmr/m/n/10.95 T. A Davis. Cre-at-ing sparse finite-element ma-tri-ces i n Underfull \hbox (badness 5490) in paragraph at lines 70--75 \OT1/cmr/m/n/10.95 MAT-LAB. \OT1/cmr/m/it/10.95 Loren on the Art of MAT-LAB\OT 1/cmr/m/n/10.95 , Mar. 2007. Underfull \hbox (badness 5985) in paragraph at lines 70--75 \OT1/cmr/m/n/10.95 Loren Shure, ed-i-tor. Pub-lished by The Math-Works, Nat- [186] Underfull \hbox (badness 10000) in paragraph at lines 84--90 []\OT1/cmr/m/n/10.95 T. A. Davis. Al-go-rithm 9xx: Suite-Sparse:GraphBLAS: Underfull \hbox (badness 10000) in paragraph at lines 84--90 \OT1/cmr/m/n/10.95 graph al-go-rithms in the lan-guage of sparse lin-ear al-ge- Underfull \hbox (badness 2932) in paragraph at lines 84--90 \OT1/cmr/m/n/10.95 bra. \OT1/cmr/m/it/10.95 ACM Trans. on Math. Soft-ware\OT1/ cmr/m/n/10.95 , (to ap-pear), 2019. Underfull \hbox (badness 5924) in paragraph at lines 130--136 []\OT1/cmr/m/n/10.95 F. G. Gus-tavson. Two fast al-go-rithms for sparse ma- Underfull \hbox (badness 5231) in paragraph at lines 130--136 \OT1/cmr/m/n/10.95 tri-ces: Mul-ti-pli-ca-tion and per-muted trans-po-si-tion. \OT1/cmr/m/it/10.95 ACM Underfull \hbox (badness 5924) in paragraph at lines 130--136 \OT1/cmr/m/it/10.95 Trans-ac-tions on Math-e-mat-i-cal Soft-ware\OT1/cmr/m/n/10 .95 , 4(3):250--269, 1978. [187] Underfull \hbox (badness 4454) in paragraph at lines 147--152 []\OT1/cmr/m/n/10.95 J. Kep-ner. Graph-BLAS math-e-mat-ics. Tech-ni-cal re-po rt, Underfull \hbox (badness 4621) in paragraph at lines 147--152 \OT1/cmr/m/n/10.95 2017. [][]http://www.mit.edu/$\OMS/cmsy/m/n/10.95 ^^X$\OT1/ cmr/m/n/10.95 kepner/GraphBLAS/GraphBLAS- Underfull \hbox (badness 1540) in paragraph at lines 183--188 []\OT1/cmr/m/n/10.95 M. Luby. A sim-ple par-al-lel al-go-rithm for the max-i-m al in- Underfull \hbox (badness 4341) in paragraph at lines 183--188 \OT1/cmr/m/n/10.95 de-pen-dent set prob-lem. \OT1/cmr/m/it/10.95 SIAM J. Com-p ut.\OT1/cmr/m/n/10.95 , 15(4), 1986. Underfull \hbox (badness 1226) in paragraph at lines 191--196 []\OT1/cmr/m/n/10.95 A. J. Wa-then. Re-al-is-tic eigen-value bounds for the Ga lerkin Underfull \hbox (badness 6944) in paragraph at lines 191--196 \OT1/cmr/m/n/10.95 mass ma-trix. \OT1/cmr/m/it/10.95 IMA J. Nu-mer. Anal.\OT1/ cmr/m/n/10.95 , 7:449--457, 1987. [188] Underfull \hbox (badness 2205) in paragraph at lines 205--211 \OT1/cmr/m/n/10.95 S. Ra-ja-man-ickam. Fast lin-ear algebra-based tri-an-gle c ount- Underfull \hbox (badness 1783) in paragraph at lines 205--211 \OT1/cmr/m/it/10.95 treme Com-put-ing Con-fer-ence (HPEC)\OT1/cmr/m/n/10.95 , p ages 1--7, Sept 2017. ) [189] (./GraphBLAS_UserGuide.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/public/amsfonts/cm/cmtt10.pfb> Output written on GraphBLAS_UserGuide.pdf (189 pages, 744067 bytes). Transcript written on GraphBLAS_UserGuide.log. make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS/Doc' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/GraphBLAS' ( cd Mongoose && make docs ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose' ( cd build ; cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_C_FLAGS_RELEASE="-g -O2 -ffile-prefix-map=/build/suitesparse-5.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_CXX_FLAGS_RELEASE="-g -O2 -ffile-prefix-map=/build/suitesparse-5.4.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" -DCMAKE_SKIP_RPATH=TRUE -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER=g++ -DCMAKE_C_COMPILER=cc .. ; make userguide ) -- The CXX compiler identification is GNU 8.3.0 -- The C compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- External ../SuiteSparse_config found. -- Note: ../SuiteSparse_config must be compiled before compiling Mongoose -- CMAKE_CXX_COMPILER: GNU -- Configuring done -- Generating done -- Build files have been written to: /build/suitesparse-5.4.0+dfsg/Mongoose/build make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' /usr/bin/cmake -S/build/suitesparse-5.4.0+dfsg/Mongoose -B/build/suitesparse-5.4.0+dfsg/Mongoose/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 userguide make[5]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' /usr/bin/cmake -S/build/suitesparse-5.4.0+dfsg/Mongoose -B/build/suitesparse-5.4.0+dfsg/Mongoose/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/suitesparse-5.4.0+dfsg/Mongoose/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 CMakeFiles/userguide.dir/all make[6]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' make -f CMakeFiles/userguide.dir/build.make CMakeFiles/userguide.dir/depend make[7]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' cd /build/suitesparse-5.4.0+dfsg/Mongoose/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/suitesparse-5.4.0+dfsg/Mongoose /build/suitesparse-5.4.0+dfsg/Mongoose /build/suitesparse-5.4.0+dfsg/Mongoose/build /build/suitesparse-5.4.0+dfsg/Mongoose/build /build/suitesparse-5.4.0+dfsg/Mongoose/build/CMakeFiles/userguide.dir/DependInfo.cmake --color= Scanning dependencies of target userguide make[7]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' make -f CMakeFiles/userguide.dir/build.make CMakeFiles/userguide.dir/build make[7]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' cd /build/suitesparse-5.4.0+dfsg/Mongoose/Doc && make make[8]: Entering directory '/build/suitesparse-5.4.0+dfsg/Mongoose/Doc' xelatex Mongoose_UserGuide This is XeTeX, Version 3.14159265-2.6-0.99999 (TeX Live 2019/dev/Debian) (preloaded format=xelatex) restricted \write18 enabled. entering extended mode (./Mongoose_UserGuide.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/fancyhdr.sty) (/usr/share/texlive/texmf-dist/tex/latex/lastpage/lastpage.sty) (/usr/share/texlive/texmf-dist/tex/latex/fancyhdr/extramarks.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/color.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/xetex.def) (/usr/share/texlive/texmf-dist/tex/latex/graphics/dvipsnam.def)) (/usr/share/texlive/texmf-dist/tex/latex/xcolor/xcolor.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/color.cfg) (/usr/share/texlive/texmf-dist/tex/latex/colortbl/colortbl.sty (/usr/share/texlive/texmf-dist/tex/latex/tools/array.sty))) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg))) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.sty (/usr/share/texlive/texmf-dist/tex/latex/listings/lstmisc.sty) (/usr/share/texlive/texmf-dist/tex/latex/listings/listings.cfg)) (/usr/share/texlive/texmf-dist/tex/latex/algorithmicx/algpseudocode.sty (/usr/share/texlive/texmf-dist/tex/latex/base/ifthen.sty) (/usr/share/texlive/texmf-dist/tex/latex/algorithmicx/algorithmicx.sty Document Style algorithmicx 1.2 - 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[21]) No file Mongoose_UserGuide.ind. AED: lastpage setting LastPage [22] (./Mongoose_UserGuide.aux) ) (see the transcript file for additional information) Output written on Mongoose_UserGuide.pdf (22 pages). Transcript written on Mongoose_UserGuide.log. make[8]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/Doc' make[7]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' Built target userguide make[6]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' /usr/bin/cmake -E cmake_progress_start /build/suitesparse-5.4.0+dfsg/Mongoose/build/CMakeFiles 0 make[5]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose/build' make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/Mongoose' ( cd AMD && make docs ) make[3]: Entering directory '/build/suitesparse-5.4.0+dfsg/AMD' ( cd Doc ; make ) make[4]: Entering directory '/build/suitesparse-5.4.0+dfsg/AMD/Doc' echo '\\begin{verbatim}' > amd_h.tex expand -8 ../Include/amd.h >> amd_h.tex echo '\\end{verbatim}' >> amd_h.tex pdflatex AMD_UserGuide This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./AMD_UserGuide.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size11.clo)) No file AMD_UserGuide.aux. (/usr/share/texlive/texmf-dist/tex/latex/base/omscmr.fd) Underfull \hbox (badness 10000) in paragraph at lines 36--36 [][]\OT1/cmr/m/n/9 ENSEEIHT-IRIT, 2 rue Camichel 31017 Toulouse, France. email: amestoy@enseeiht.fr. Underfull \hbox (badness 1320) in paragraph at lines 36--36 \OT1/cmr/m/n/9 http://www.numerical.rl.ac.uk/people/isd/isd.html. This work was sup-ported by the EP-SRC un-der grant [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Citation `AmestoyDavisDuff96' on page 2 undefined on input line 74. LaTeX Warning: Citation `AmestoyDavisDuff04' on page 2 undefined on input line 74. LaTeX Warning: Citation `GeorgeLiu89' on page 2 undefined on input line 80. LaTeX Warning: Citation `RothbergEisenstat98' on page 2 undefined on input line 82. LaTeX Warning: Citation `Chaco' on page 2 undefined on input line 83. LaTeX Warning: Citation `KarypisKumar98e' on page 2 undefined on input line 83. 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Transcript written on AMD_UserGuide.log. make[4]: *** [Makefile:29: AMD_UserGuide.pdf] Error 1 make[4]: Leaving directory '/build/suitesparse-5.4.0+dfsg/AMD/Doc' make[3]: *** [Makefile:55: docs] Error 2 make[3]: Leaving directory '/build/suitesparse-5.4.0+dfsg/AMD' make[2]: *** [Makefile:222: docs] Error 2 make[2]: Leaving directory '/build/suitesparse-5.4.0+dfsg' make[1]: *** [debian/rules:32: override_dh_auto_build] Error 2 make[1]: Leaving directory '/build/suitesparse-5.4.0+dfsg' make: *** [debian/rules:26: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 I: copying local configuration E: Failed autobuilding of package I: user script /srv/workspace/pbuilder/6118/tmp/hooks/C01_cleanup starting debug output: disk usage on i-capture-the-hostname at Thu Sep 2 18:19:58 UTC 2021 Filesystem Size Used Avail Use% Mounted on tmpfs 7.2G 0 7.2G 0% /dev/shm I: user script /srv/workspace/pbuilder/6118/tmp/hooks/C01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/6118 and its subdirectories