I: pbuilder: network access will be disabled during build I: Current time: Sun May 3 04:28:25 +14 2020 I: pbuilder-time-stamp: 1588429705 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [librostlab_1.0.20-8.dsc] I: copying [./librostlab_1.0.20.orig.tar.gz] I: copying [./librostlab_1.0.20-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 20 23:12:10 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./librostlab_1.0.20-8.dsc dpkg-source: info: extracting librostlab in librostlab-1.0.20 dpkg-source: info: unpacking librostlab_1.0.20.orig.tar.gz dpkg-source: info: unpacking librostlab_1.0.20-8.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22629/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/22629/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), d-shlibs, doxygen, graphviz, texlive-latex-recommended, texlive-fonts-recommended, texlive-latex-extra, dh-linktree, sphinx-common dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. pbuilder-satisfydepends-dummy depends on dh-linktree; however: Package dh-linktree is not installed. pbuilder-satisfydepends-dummy depends on sphinx-common; however: Package sphinx-common is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-linktree{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} graphviz{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang1-6.0{a} libcroco3{a} libcups2{a} libcupsimage2{a} libdatrie1{a} libdbus-1-3{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgd3{a} libglib2.0-0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice6{a} libicu63{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkpathsea6{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblcms2-2{a} libllvm6.0{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libopenjp2-7{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpathplan4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpotrace0{a} libptexenc1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libreadline7{a} libsigsegv2{a} libsm6{a} libssl1.1{a} libsynctex2{a} libteckit0{a} libtexlua52{a} libtexlua53{a} libtexluajit2{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwoff1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxdot4{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libxxhash0{a} libzzip-0-13{a} lsb-base{a} m4{a} man-db{a} mime-support{a} po-debconf{a} poppler-data{a} preview-latex-style{a} python{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} readline-common{a} sensible-utils{a} sphinx-common{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus fonts-droid-fallback fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libcupsfilters1 libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl lmodern lynx python-sphinx python3-sphinx ruby shared-mime-info tex-gyre texlive-plain-generic tipa tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 155 newly installed, 0 to remove and 0 not upgraded. Need to get 158 MB of archives. After unpacking 555 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libpython2.7-minimal i386 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main i386 python2.7-minimal i386 2.7.16-2+deb10u1 [1381 kB] Get: 9 http://deb.debian.org/debian buster/main i386 python2-minimal i386 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python-minimal i386 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u2 [1538 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython2.7-stdlib i386 2.7.16-2+deb10u1 [1934 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python2.7 i386 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython2-stdlib i386 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main i386 libpython-stdlib i386 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main i386 python2 i386 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main i386 python i386 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 poppler-data all 0.4.9-2 [1473 kB] Get: 23 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 24 http://deb.debian.org/debian buster/main i386 ucf all 3.0038+nmu1 [69.0 kB] Get: 25 http://deb.debian.org/debian buster/main i386 tex-common all 6.11 [53.1 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 28 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 29 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 30 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 31 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 32 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 33 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 34 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 35 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 36 http://deb.debian.org/debian buster/main i386 d-shlibs all 0.84 [17.2 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 38 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 40 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 41 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 43 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6 [8443 kB] Get: 46 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 47 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 48 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 49 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 50 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 51 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 52 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 53 http://deb.debian.org/debian buster/main i386 dh-linktree all 0.6 [10.7 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libedit2 i386 3.1-20181209-1 [98.2 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libllvm6.0 i386 1:6.0.1-10 [16.4 MB] Get: 56 http://deb.debian.org/debian buster/main i386 libclang1-6.0 i386 1:6.0.1-10 [7959 kB] Get: 57 http://deb.debian.org/debian buster/main i386 doxygen i386 1.8.13-10 [4004 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libpng16-16 i386 1.6.36-6 [301 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libfreetype6 i386 2.9.1-3+deb10u1 [395 kB] Get: 60 http://deb.debian.org/debian buster/main i386 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 61 http://deb.debian.org/debian buster/main i386 fontconfig-config all 2.13.1-2 [280 kB] Get: 62 http://deb.debian.org/debian buster/main i386 libfontconfig1 i386 2.13.1-2 [357 kB] Get: 63 http://deb.debian.org/debian buster/main i386 fontconfig i386 2.13.1-2 [405 kB] Get: 64 http://deb.debian.org/debian buster/main i386 fonts-lmodern all 2.004.5-6 [4539 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libpixman-1-0 i386 0.36.0-1 [541 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libxau6 i386 1:1.0.8-1+b2 [20.3 kB] Get: 67 http://deb.debian.org/debian buster/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libxcb1 i386 1.13.1-2 [141 kB] Get: 69 http://deb.debian.org/debian buster/main i386 libx11-data all 2:1.6.7-1 [298 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libx11-6 i386 2:1.6.7-1 [778 kB] Get: 71 http://deb.debian.org/debian buster/main i386 libxcb-render0 i386 1.13.1-2 [110 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libxcb-shm0 i386 1.13.1-2 [99.4 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libxext6 i386 2:1.3.3-1+b2 [55.2 kB] Get: 74 http://deb.debian.org/debian buster/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libcairo2 i386 1.16.0-4 [744 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libcdt5 i386 2.40.1-6 [61.0 kB] Get: 77 http://deb.debian.org/debian buster/main i386 libcgraph6 i386 2.40.1-6 [88.1 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libjpeg62-turbo i386 1:1.5.2-2+b1 [142 kB] Get: 79 http://deb.debian.org/debian buster/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 80 http://deb.debian.org/debian buster/main i386 libwebp6 i386 0.6.1-2 [275 kB] Get: 81 http://deb.debian.org/debian buster/main i386 libtiff5 i386 4.1.0+git191117-2~deb10u1 [284 kB] Get: 82 http://deb.debian.org/debian buster/main i386 libxpm4 i386 1:3.5.12-1 [50.9 kB] Get: 83 http://deb.debian.org/debian buster/main i386 libgd3 i386 2.2.5-5.2 [141 kB] Get: 84 http://deb.debian.org/debian buster/main i386 libgts-0.7-5 i386 0.7.6+darcs121130-4 [161 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 86 http://deb.debian.org/debian buster/main i386 libfribidi0 i386 1.0.5-3.1+deb10u1 [64.3 kB] Get: 87 http://deb.debian.org/debian buster/main i386 libthai-data all 0.1.28-2 [170 kB] Get: 88 http://deb.debian.org/debian buster/main i386 libdatrie1 i386 0.2.12-2 [40.7 kB] Get: 89 http://deb.debian.org/debian buster/main i386 libthai0 i386 0.1.28-2 [55.2 kB] Get: 90 http://deb.debian.org/debian buster/main i386 libpango-1.0-0 i386 1.42.4-7~deb10u1 [191 kB] Get: 91 http://deb.debian.org/debian buster/main i386 libgraphite2-3 i386 1.3.13-7 [84.0 kB] Get: 92 http://deb.debian.org/debian buster/main i386 libharfbuzz0b i386 2.3.1-1 [1209 kB] Get: 93 http://deb.debian.org/debian buster/main i386 libpangoft2-1.0-0 i386 1.42.4-7~deb10u1 [71.0 kB] Get: 94 http://deb.debian.org/debian buster/main i386 libpangocairo-1.0-0 i386 1.42.4-7~deb10u1 [57.1 kB] Get: 95 http://deb.debian.org/debian buster/main i386 libpathplan4 i386 2.40.1-6 [64.0 kB] Get: 96 http://deb.debian.org/debian buster/main i386 libxdot4 i386 2.40.1-6 [57.9 kB] Get: 97 http://deb.debian.org/debian buster/main i386 libgvc6 i386 2.40.1-6 [676 kB] Get: 98 http://deb.debian.org/debian buster/main i386 libgvpr2 i386 2.40.1-6 [223 kB] Get: 99 http://deb.debian.org/debian buster/main i386 lsb-base all 10.2019051400 [28.4 kB] Get: 100 http://deb.debian.org/debian buster/main i386 x11-common all 1:7.7+19 [251 kB] Get: 101 http://deb.debian.org/debian buster/main i386 libice6 i386 2:1.0.9-2 [61.1 kB] Get: 102 http://deb.debian.org/debian buster/main i386 liblab-gamut1 i386 2.40.1-6 [220 kB] Get: 103 http://deb.debian.org/debian buster/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 104 http://deb.debian.org/debian buster/main i386 libxt6 i386 1:1.1.5-1+b3 [195 kB] Get: 105 http://deb.debian.org/debian buster/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 106 http://deb.debian.org/debian buster/main i386 libxaw7 i386 2:1.0.13-1+b2 [209 kB] Get: 107 http://deb.debian.org/debian buster/main i386 graphviz i386 2.40.1-6 [595 kB] Get: 108 http://deb.debian.org/debian buster/main i386 libavahi-common-data i386 0.7-4+b1 [122 kB] Get: 109 http://deb.debian.org/debian buster/main i386 libavahi-common3 i386 0.7-4+b1 [56.2 kB] Get: 110 http://deb.debian.org/debian buster/main i386 libdbus-1-3 i386 1.12.16-1 [226 kB] Get: 111 http://deb.debian.org/debian buster/main i386 libavahi-client3 i386 0.7-4+b1 [60.1 kB] Get: 112 http://deb.debian.org/debian buster/main i386 libbrotli1 i386 1.0.7-2 [267 kB] Get: 113 http://deb.debian.org/debian buster/main i386 libkeyutils1 i386 1.6-6 [15.4 kB] Get: 114 http://deb.debian.org/debian buster/main i386 libkrb5support0 i386 1.17-3 [68.6 kB] Get: 115 http://deb.debian.org/debian buster/main i386 libk5crypto3 i386 1.17-3 [126 kB] Get: 116 http://deb.debian.org/debian buster/main i386 libkrb5-3 i386 1.17-3 [396 kB] Get: 117 http://deb.debian.org/debian buster/main i386 libgssapi-krb5-2 i386 1.17-3 [168 kB] Get: 118 http://deb.debian.org/debian buster/main i386 libcups2 i386 2.2.10-6+deb10u2 [338 kB] Get: 119 http://deb.debian.org/debian buster/main i386 libcupsimage2 i386 2.2.10-6+deb10u2 [133 kB] Get: 120 http://deb.debian.org/debian buster/main i386 libgs9-common all 9.27~dfsg-2+deb10u3 [5136 kB] Get: 121 http://deb.debian.org/debian buster/main i386 libidn11 i386 1.33-2.2 [116 kB] Get: 122 http://deb.debian.org/debian buster/main i386 libijs-0.35 i386 0.35-14 [18.9 kB] Get: 123 http://deb.debian.org/debian buster/main i386 libjbig2dec0 i386 0.16-1 [64.6 kB] Get: 124 http://deb.debian.org/debian buster/main i386 liblcms2-2 i386 2.9-3 [156 kB] Get: 125 http://deb.debian.org/debian buster/main i386 libopenjp2-7 i386 2.3.0-2+deb10u1 [164 kB] Get: 126 http://deb.debian.org/debian buster/main i386 libpaper1 i386 1.1.28 [21.4 kB] Get: 127 http://deb.debian.org/debian buster/main i386 libgs9 i386 9.27~dfsg-2+deb10u3 [2300 kB] Get: 128 http://deb.debian.org/debian buster/main i386 libharfbuzz-icu0 i386 2.3.1-1 [834 kB] Get: 129 http://deb.debian.org/debian buster/main i386 libjs-jquery all 3.3.1~dfsg-3 [332 kB] Get: 130 http://deb.debian.org/debian buster/main i386 libjs-underscore all 1.9.1~dfsg-1 [99.4 kB] Get: 131 http://deb.debian.org/debian buster/main i386 libjs-sphinxdoc all 1.8.4-1 [95.9 kB] Get: 132 http://deb.debian.org/debian buster/main i386 libkpathsea6 i386 2018.20181218.49446-1 [171 kB] Get: 133 http://deb.debian.org/debian buster/main i386 libpaper-utils i386 1.1.28 [18.3 kB] Get: 134 http://deb.debian.org/debian buster/main i386 libpotrace0 i386 1.15-1 [25.6 kB] Get: 135 http://deb.debian.org/debian buster/main i386 libptexenc1 i386 2018.20181218.49446-1 [61.6 kB] Get: 136 http://deb.debian.org/debian buster/main i386 libsynctex2 i386 2018.20181218.49446-1 [83.5 kB] Get: 137 http://deb.debian.org/debian buster/main i386 libteckit0 i386 2.5.8+ds2-5 [268 kB] Get: 138 http://deb.debian.org/debian buster/main i386 libtexlua52 i386 2018.20181218.49446-1 [121 kB] Get: 139 http://deb.debian.org/debian buster/main i386 libtexlua53 i386 2018.20181218.49446-1 [141 kB] Get: 140 http://deb.debian.org/debian buster/main i386 libtexluajit2 i386 2018.20181218.49446-1 [270 kB] Get: 141 http://deb.debian.org/debian buster/main i386 libwoff1 i386 1.0.2-1 [46.0 kB] Get: 142 http://deb.debian.org/debian buster/main i386 libxi6 i386 2:1.7.9-1 [85.2 kB] Get: 143 http://deb.debian.org/debian buster/main i386 libxxhash0 i386 0.6.5-2 [8788 B] Get: 144 http://deb.debian.org/debian buster/main i386 libzzip-0-13 i386 0.13.62-3.2 [57.3 kB] Get: 145 http://deb.debian.org/debian buster/main i386 preview-latex-style all 11.91-2 [201 kB] Get: 146 http://deb.debian.org/debian buster/main i386 sphinx-common all 1.8.4-1 [500 kB] Get: 147 http://deb.debian.org/debian buster/main i386 t1utils i386 1.41-3 [62.2 kB] Get: 148 http://deb.debian.org/debian buster/main i386 texlive-binaries i386 2018.20181218.49446-1 [11.2 MB] Get: 149 http://deb.debian.org/debian buster/main i386 xdg-utils all 1.1.3-1 [73.3 kB] Get: 150 http://deb.debian.org/debian buster/main i386 texlive-base all 2018.20190227-2 [19.7 MB] Get: 151 http://deb.debian.org/debian buster/main i386 texlive-fonts-recommended all 2018.20190227-2 [5228 kB] Get: 152 http://deb.debian.org/debian buster/main i386 texlive-latex-base all 2018.20190227-2 [984 kB] Get: 153 http://deb.debian.org/debian buster/main i386 texlive-latex-recommended all 2018.20190227-2 [15.2 MB] Get: 154 http://deb.debian.org/debian buster/main i386 texlive-pictures all 2018.20190227-2 [8201 kB] Get: 155 http://deb.debian.org/debian buster/main i386 texlive-latex-extra all 2018.20190227-2 [12.3 MB] Fetched 158 MB in 44s (3568 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19231 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... 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Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libpython-stdlib:i386 (2.7.16-1) ... Setting up sphinx-common (1.8.4-1) ... Setting up libxt6:i386 (1:1.1.5-1+b3) ... Setting up libcups2:i386 (2.2.10-6+deb10u2) ... Setting up libfontconfig1:i386 (2.13.1-2) ... Setting up python (2.7.16-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxmu6:i386 (2:1.1.2-2+b3) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up po-debconf (1.0.21) ... Setting up preview-latex-style (11.91-2) ... Setting up libpango-1.0-0:i386 (1.42.4-7~deb10u1) ... Setting up libxaw7:i386 (2:1.0.13-1+b2) ... Setting up libcairo2:i386 (1.16.0-4) ... Setting up libcupsimage2:i386 (2.2.10-6+deb10u2) ... Setting up libgd3:i386 (2.2.5-5.2) ... Setting up libpangoft2-1.0-0:i386 (1.42.4-7~deb10u1) ... Setting up libpangocairo-1.0-0:i386 (1.42.4-7~deb10u1) ... Setting up libgs9:i386 (9.27~dfsg-2+deb10u3) ... Setting up libgvc6 (2.40.1-6) ... Setting up texlive-binaries (2018.20181218.49446-1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2018.20190227-2) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up graphviz (2.40.1-6) ... Setting up texlive-latex-base (2018.20190227-2) ... Setting up texlive-latex-recommended (2018.20190227-2) ... Setting up texlive-pictures (2018.20190227-2) ... Setting up texlive-fonts-recommended (2018.20190227-2) ... Setting up texlive-latex-extra (2018.20190227-2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Setting up dh-linktree (0.6) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for tex-common (6.11) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/librostlab-1.0.20/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package librostlab dpkg-buildpackage: info: source version 1.0.20-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with linktree dh_clean debian/rules build dh build --with linktree dh_update_autotools_config dh_autoreconf configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5253: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:9: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5360: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... m4/libtool.m4:796: _LT_LANG_DEFAULT_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... m4/libtool.m4:102: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/librostlab-1.0.20' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-dot --enable-doxygen-pdf configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert i686-pc-linux-gnu file names to i686-pc-linux-gnu format... func_convert_file_noop checking how to convert i686-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking for pdflatex... /usr/bin/pdflatex checking for makeindex... /usr/bin/makeindex checking for egrep... /bin/egrep checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/build/librostlab-1.0.20' debian/rules override_dh_auto_build make[1]: Entering directory '/build/librostlab-1.0.20' dh_auto_build make -j10 make[2]: Entering directory '/build/librostlab-1.0.20' make all-recursive make[3]: Entering directory '/build/librostlab-1.0.20' Making all in lib make[4]: Entering directory '/build/librostlab-1.0.20/lib' make all-am make[5]: Entering directory '/build/librostlab-1.0.20/lib' /bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_la-blosum62.lo `test -f 'blosum62.cpp' || echo './'`blosum62.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -fPIC -DPIC -o .libs/librostlab_la-blosum62.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/build/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -c blosum62.cpp -o librostlab_la-blosum62.o >/dev/null 2>&1 /bin/sh ../libtool --tag=CXX --mode=link g++ -Wall -g -O2 -ffile-prefix-map=/build/librostlab-1.0.20=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 3:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab.la -rpath /usr/lib/i386-linux-gnu librostlab_la-blosum62.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/8/crtbeginS.o .libs/librostlab_la-blosum62.o -L/usr/lib/gcc/i686-linux-gnu/8 -L/usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/8/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/8/crtendS.o /usr/lib/gcc/i686-linux-gnu/8/../../../i386-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab.so.3 -o .libs/librostlab.so.3.0.0 libtool: link: (cd ".libs" && rm -f "librostlab.so.3" && ln -s "librostlab.so.3.0.0" "librostlab.so.3") libtool: link: (cd ".libs" && rm -f "librostlab.so" && ln -s "librostlab.so.3.0.0" "librostlab.so") libtool: link: ar cru .libs/librostlab.a librostlab_la-blosum62.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/librostlab.a libtool: link: ( cd ".libs" && rm -f "librostlab.la" && ln -s "../librostlab.la" "librostlab.la" ) make[5]: Leaving directory '/build/librostlab-1.0.20/lib' make[4]: Leaving directory '/build/librostlab-1.0.20/lib' make[4]: Entering directory '/build/librostlab-1.0.20' make[4]: Leaving directory '/build/librostlab-1.0.20' make[3]: Leaving directory '/build/librostlab-1.0.20' make[2]: Leaving directory '/build/librostlab-1.0.20' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/build/librostlab-1.0.20/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab' DOCDIR='../doxygen-doc' VERSION='1.0.20' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='YES' /usr/bin/doxygen ./Doxyfile warning: Tag `SYMBOL_CACHE_SIZE' at line 290 of file `./Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `SHOW_DIRECTORIES' at line 490 of file `./Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `HTML_ALIGN_MEMBERS' at line 847 of file `./Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `USE_INLINE_TREES' at line 1032 of file `./Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_SCHEMA' at line 1257 of file `./Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1263 of file `./Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. Notice: Output directory `../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/librostlab-1.0.20/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /build/librostlab-1.0.20/lib/rostlab/aux_functions.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/aux_functions.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/blosum62.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/blosum62.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/cwd_resource.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/cxxgrp.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/cxxpwd.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/euid_egid_resource.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/file_lock_resource.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/mapAA2int.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/readFasta.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/readFasta.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/rostlab_stdexcept.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/rostlab_stdio.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/rostlab_stdlib.h... Preprocessing /build/librostlab-1.0.20/lib/rostlab/umask_resource.h... Parsing file /build/librostlab-1.0.20/lib/rostlab/umask_resource.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/aux_functions.h... Generating code for file rostlab/blosum62.h... Generating code for file rostlab/cwd_resource.h... Generating code for file rostlab/cxxgrp.h... Generating code for file rostlab/cxxpwd.h... Generating code for file rostlab/euid_egid_resource.h... Generating code for file rostlab/file_lock_resource.h... Generating code for file rostlab/mapAA2int.h... Generating code for file rostlab/readFasta.h... Generating code for file rostlab/rostlab_stdexcept.h... Generating code for file rostlab/rostlab_stdio.h... Generating code for file rostlab/rostlab_stdlib.h... Generating code for file rostlab/umask_resource.h... Generating file documentation... Generating docs for file rostlab/aux_functions.h... Generating docs for file rostlab/blosum62.h... Generating docs for file rostlab/cwd_resource.h... Generating docs for file rostlab/cxxgrp.h... Generating docs for file rostlab/cxxpwd.h... Generating docs for file rostlab/euid_egid_resource.h... Generating docs for file rostlab/file_lock_resource.h... Generating docs for file rostlab/mapAA2int.h... Generating docs for file rostlab/readFasta.h... Generating docs for file rostlab/rostlab_stdexcept.h... Generating docs for file rostlab/rostlab_stdio.h... Generating docs for file rostlab/rostlab_stdlib.h... Generating docs for file rostlab/umask_resource.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for compound rostlab::cwd_resource... Generating docs for compound rostlab::cxx_group... Generating docs for compound rostlab::cxx_passwd... Generating docs for compound rostlab::error_backtracer... Generating docs for compound rostlab::euid_egid_resource... Generating docs for compound rostlab::exception... Generating docs for compound rostlab::file_lock_resource... Generating docs for nested compound rostlab::file_lock_resource::wouldblock... Generating docs for compound rostlab::gid_not_found_error... Generating docs for compound rostlab::gname_not_found_error... Generating docs for compound rostlab::runtime_error... Generating docs for compound rostlab::uid_not_found_error... Generating docs for compound rostlab::umask_resource... Generating docs for compound rostlab::uname_not_found_error... Generating docs for namespace rostlab::bio Generating docs for compound rostlab::bio::seq... Generating docs for namespace rostlab::bio::fmt Generating docs for compound rostlab::bio::fmt::fasta... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running dot... Generating dot graphs using 11 parallel threads... 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(/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmr.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1phv.fd) (/usr/share/texlive/texmf-dist/tex/context/base/mkii/supp-pdf.mkii [Loading MPS to PDF converter (version 2006.09.02).] ) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty) (/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg)) *geometry* driver: auto-detecting *geometry* detected driver: pdftex (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty)) (/usr/share/texlive/texmf-dist/tex/latex/wasysym/uwasy.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd) (/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd) [1{/var/lib/texmf/fo nts/map/pdftex/updmap/pdftex.map}] [2] [1] [2] Chapter 1. (./namespaces.tex LaTeX Warning: Reference `namespacerostlab' on page 1 undefined on input line 3 . 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LaTeX Warning: Reference `umask__resource_8h' on page 7 undefined on input line 15. ) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] (/usr/share/texlive/texmf-dist/tex/latex/psnfss/t1pcr.fd) LaTeX Font Warning: Font shape `T1/pcr/bc/n' undefined (Font) using `T1/pcr/m/n' instead on input line 157. [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex [18]) (./namespacerostlab_1_1bio_1_1fmt.tex) [19] [20] Chapter 6. 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(./refman.aux) Package rerunfilecheck Warning: File `refman.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. LaTeX Font Warning: Some font shapes were not available, defaults substituted. LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ){/usr/share/texlive/texmf-dist/fonts/enc/dvips/base/8r.enc} Output written on refman.pdf (58 pages, 391313 bytes). Transcript written on refman.log. This is makeindex, version 2.15 [TeX Live 2019/dev] (kpathsea + Thai support). Scanning input file refman.idx....done (200 entries accepted, 0 rejected). Sorting entries.....done (1542 comparisons). Generating output file refman.ind....done (280 lines written, 0 warnings). Output written in refman.ind. Transcript written in refman.ilg. This is pdfTeX, Version 3.14159265-2.6-1.40.19 (TeX Live 2019/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./refman.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/base/fixltx2e.sty Package fixltx2e Warning: fixltx2e is not required with releases after 2015 (fixltx2e) All fixes are now in the LaTeX kernel. 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(./namespaces.tex) [1] [2] Chapter 2. (./hierarchy.tex) [3] [4] Chapter 3. (./annotated.tex) [5] [6] Chapter 4. (./files.tex) [7] [8] Chapter 5. (./namespacerostlab.tex (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1phv.fd) [9] [10] LaTeX Font Warning: Font shape `T1/pcr/bc/n' undefined (Font) using `T1/pcr/m/n' instead on input line 157. [11] [12] [13] [14] [15] [16] [17]) (./namespacerostlab_1_1bio.tex [18]) (./namespacerostlab_1_1bio_1_1fmt.tex) [19] [20] Chapter 6. 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[38]) (./classrostlab_1_1uid__not__found__error.tex [39] [40 <./classrostlab_1_ 1uid__not__found__error__inherit__graph.pdf> <./classrostlab_1_1uid__not__found __error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uid__not__found__erro r__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page >]) (./classrostlab_1_1umask__resource.tex) (./classrostlab_1_1uname__not__found__error.tex [41] [42 <./classrostlab_1_1una me__not__found__error__inherit__graph.pdf> <./classrostlab_1_1uname__not__found __error__coll__graph.pdf pdfTeX warning: /usr/bin/pdflatex (file ./classrostlab_1_1uname__not__found__er ror__coll__graph.pdf): PDF inclusion: multiple pdfs with page group included in a single page >]) (./classrostlab_1_1file__lock__resource_1_1wouldblock.tex [43 <./classrostl ab_1_1file__lock__resource_1_1wouldblock__inherit__graph.pdf>]) [44 <./classros tlab_1_1file__lock__resource_1_1wouldblock__coll__graph.pdf>] Chapter 7. 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Transcript written on refman.log. make[2]: Leaving directory '/build/librostlab-1.0.20/lib' make[1]: Leaving directory '/build/librostlab-1.0.20' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/librostlab-1.0.20' Making check in lib make[2]: Entering directory '/build/librostlab-1.0.20/lib' make check-am make[3]: Entering directory '/build/librostlab-1.0.20/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/librostlab-1.0.20/lib' make[2]: Entering directory '/build/librostlab-1.0.20' make[2]: Leaving directory '/build/librostlab-1.0.20' make[1]: Leaving directory '/build/librostlab-1.0.20' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with linktree dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/librostlab-1.0.20/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/librostlab-1.0.20' Making install in lib make[2]: Entering directory '/build/librostlab-1.0.20/lib' make install-am make[3]: Entering directory '/build/librostlab-1.0.20/lib' make[4]: Entering directory '/build/librostlab-1.0.20/lib' /bin/mkdir -p '/build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu' /bin/sh ../libtool --mode=install /usr/bin/install -c librostlab.la '/build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu' libtool: install: /usr/bin/install -c .libs/librostlab.so.3.0.0 /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.so.3.0.0 libtool: install: (cd /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so.3 || { rm -f librostlab.so.3 && ln -s librostlab.so.3.0.0 librostlab.so.3; }; }) libtool: install: (cd /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu && { ln -s -f librostlab.so.3.0.0 librostlab.so || { rm -f librostlab.so && ln -s librostlab.so.3.0.0 librostlab.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab.lai /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.la libtool: install: /usr/bin/install -c .libs/librostlab.a /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.a libtool: install: chmod 644 /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.a libtool: install: ranlib /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.a libtool: warning: remember to run 'libtool --finish /usr/lib/i386-linux-gnu' /bin/mkdir -p '/build/librostlab-1.0.20/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/aux_functions.h rostlab/blosum62.h rostlab/cwd_resource.h rostlab/cxxgrp.h rostlab/cxxpwd.h rostlab/euid_egid_resource.h rostlab/file_lock_resource.h rostlab/mapAA2int.h rostlab/readFasta.h rostlab/rostlab_stdexcept.h rostlab/rostlab_stdio.h rostlab/rostlab_stdlib.h rostlab/umask_resource.h '/build/librostlab-1.0.20/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/build/librostlab-1.0.20/lib' make[3]: Leaving directory '/build/librostlab-1.0.20/lib' make[2]: Leaving directory '/build/librostlab-1.0.20/lib' make[2]: Entering directory '/build/librostlab-1.0.20' make[3]: Entering directory '/build/librostlab-1.0.20' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/librostlab-1.0.20' make[2]: Leaving directory '/build/librostlab-1.0.20' make[1]: Leaving directory '/build/librostlab-1.0.20' debian/rules override_dh_install make[1]: Entering directory '/build/librostlab-1.0.20' dh_install d-shlibmove --commit \ --multiarch \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab3-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/librostlab3/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/librostlab.a debian/librostlab3-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/librostlab.so debian/librostlab3-dev/usr/lib/i386-linux-gnu mv /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.so.3 debian/librostlab3/usr/lib/i386-linux-gnu mv /build/librostlab-1.0.20/debian/tmp/usr/lib/i386-linux-gnu/librostlab.so.3.0.0 debian/librostlab3/usr/lib/i386-linux-gnu PKGDEV=librostlab3-dev PKGSHL=librostlab3 install -d -m 755 debian/librostlab3-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab3-dev/usr/include make[1]: Leaving directory '/build/librostlab-1.0.20' debian/rules override_dh_installdocs make[1]: Entering directory '/build/librostlab-1.0.20' dh_installdocs dh_installdocs: Cannot auto-detect main package for librostlab-doc. If the default is wrong, please use --doc-main-package find debian -name "*_*.md5" -delete make[1]: Leaving directory '/build/librostlab-1.0.20' dh_installchangelogs dh_installexamples dh_perl dh_link dh_linktree dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/librostlab-1.0.20' dh_compress -Xlibrostlab.tag make[1]: Leaving directory '/build/librostlab-1.0.20' dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librostlab3/usr/lib/i386-linux-gnu/librostlab.so.3.0.0 was not linked against libgcc_s.so.1 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/librostlab3/usr/lib/i386-linux-gnu/librostlab.so.3.0.0 was not linked against libstdc++.so.6 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package librostlab-doc: substitution variable ${js:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'librostlab3-dev' in '../librostlab3-dev_1.0.20-8_i386.deb'. dpkg-deb: building package 'librostlab-doc' in '../librostlab-doc_1.0.20-8_all.deb'. dpkg-deb: building package 'librostlab3-dbgsym' in '../librostlab3-dbgsym_1.0.20-8_i386.deb'. dpkg-deb: building package 'librostlab3' in '../librostlab3_1.0.20-8_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../librostlab_1.0.20-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/22629/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/22629/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22629 and its subdirectories I: Current time: Sun May 3 04:35:44 +14 2020 I: pbuilder-time-stamp: 1588430144