I: pbuilder: network access will be disabled during build I: Current time: Sun Aug 9 03:17:43 +14 2020 I: pbuilder-time-stamp: 1596892663 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [ncbi-seg_0.0.20000620-5.dsc] I: copying [./ncbi-seg_0.0.20000620.orig.tar.gz] I: copying [./ncbi-seg_0.0.20000620-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 14 12:45:08 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-seg_0.0.20000620-5.dsc dpkg-source: info: extracting ncbi-seg in ncbi-seg-0.0.20000620 dpkg-source: info: unpacking ncbi-seg_0.0.20000620.orig.tar.gz dpkg-source: info: unpacking ncbi-seg_0.0.20000620-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying example dpkg-source: info: applying seg.c dpkg-source: info: applying genwin.c dpkg-source: info: applying autotools dpkg-source: info: applying seg.pod dpkg-source: info: applying clang.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10114/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build12-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/10114/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/10114/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="0" [2]="3" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.0.3(1)-release' BUILDDIR=/build BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10' DIRSTACK=() DISTRIBUTION= EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=0fe0945df18e4b49ac6bbfb43f2886b7 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=10114 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.VtirvkNUUB/pbuilderrc_36fK --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.VtirvkNUUB/b2 --logfile b2/build.log ncbi-seg_0.0.20000620-5.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://78.137.99.97:3128 I: uname -a Linux i-capture-the-hostname 4.19.0-10-686-pae #1 SMP Debian 4.19.132-1 (2020-07-24) i686 GNU/Linux I: ls -l /bin total 5508 -rwxr-xr-x 1 root root 1302248 Apr 18 2019 bash -rwxr-xr-x 3 root root 38280 Jul 11 2019 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 11 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 11 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 11 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 25 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 11 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 11 2019 bzgrep -rwxr-xr-x 3 root root 38280 Jul 11 2019 bzip2 -rwxr-xr-x 1 root root 17768 Jul 11 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 11 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 11 2019 bzmore -rwxr-xr-x 1 root root 38692 Mar 1 2019 cat -rwxr-xr-x 1 root root 75588 Mar 1 2019 chgrp -rwxr-xr-x 1 root root 63268 Mar 1 2019 chmod -rwxr-xr-x 1 root root 75588 Mar 1 2019 chown -rwxr-xr-x 1 root root 153732 Mar 1 2019 cp -rwxr-xr-x 1 root root 132820 Jan 18 2019 dash -rwxr-xr-x 1 root root 120676 Mar 1 2019 date -rwxr-xr-x 1 root root 92040 Mar 1 2019 dd -rwxr-xr-x 1 root root 100620 Mar 1 2019 df -rwxr-xr-x 1 root root 149736 Mar 1 2019 dir -rwxr-xr-x 1 root root 79412 Jan 10 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 27 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 27 2018 domainname -> hostname -rwxr-xr-x 1 root root 34532 Mar 1 2019 echo -rwxr-xr-x 1 root root 28 Jan 8 2019 egrep -rwxr-xr-x 1 root root 34532 Mar 1 2019 false -rwxr-xr-x 1 root root 28 Jan 8 2019 fgrep -rwxr-xr-x 1 root root 67700 Jan 10 2019 findmnt -rwsr-xr-x 1 root root 30112 Apr 23 09:38 fusermount -rwxr-xr-x 1 root root 206392 Jan 8 2019 grep -rwxr-xr-x 2 root root 2345 Jan 6 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 6 2019 gzexe -rwxr-xr-x 1 root root 100952 Jan 6 2019 gzip -rwxr-xr-x 1 root root 21916 Sep 27 2018 hostname -rwxr-xr-x 1 root root 79752 Mar 1 2019 ln -rwxr-xr-x 1 root root 55400 Jul 27 2018 login -rwxr-xr-x 1 root root 149736 Mar 1 2019 ls -rwxr-xr-x 1 root root 112032 Jan 10 2019 lsblk -rwxr-xr-x 1 root root 87972 Mar 1 2019 mkdir -rwxr-xr-x 1 root root 79748 Mar 1 2019 mknod -rwxr-xr-x 1 root root 46916 Mar 1 2019 mktemp -rwxr-xr-x 1 root root 42348 Jan 10 2019 more -rwsr-xr-x 1 root root 50592 Jan 10 2019 mount -rwxr-xr-x 1 root root 13724 Jan 10 2019 mountpoint -rwxr-xr-x 1 root root 157832 Mar 1 2019 mv lrwxrwxrwx 1 root root 8 Sep 27 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 15 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38660 Mar 1 2019 pwd lrwxrwxrwx 1 root root 4 Apr 18 2019 rbash -> bash -rwxr-xr-x 1 root root 46852 Mar 1 2019 readlink -rwxr-xr-x 1 root root 75588 Mar 1 2019 rm -rwxr-xr-x 1 root root 42756 Mar 1 2019 rmdir -rwxr-xr-x 1 root root 22276 Jan 22 2019 run-parts -rwxr-xr-x 1 root root 125036 Dec 23 2018 sed lrwxrwxrwx 1 root root 4 Aug 9 03:21 sh -> bash lrwxrwxrwx 1 root root 4 Aug 8 22:26 sh.distrib -> dash -rwxr-xr-x 1 root root 34532 Mar 1 2019 sleep -rwxr-xr-x 1 root root 79652 Mar 1 2019 stty -rwsr-xr-x 1 root root 71072 Jan 10 2019 su -rwxr-xr-x 1 root root 34564 Mar 1 2019 sync -rwxr-xr-x 1 root root 504024 Apr 24 2019 tar -rwxr-xr-x 1 root root 13860 Jan 22 2019 tempfile -rwxr-xr-x 1 root root 104292 Mar 1 2019 touch -rwxr-xr-x 1 root root 34532 Mar 1 2019 true -rwxr-xr-x 1 root root 17768 Apr 23 09:38 ulockmgr_server -rwsr-xr-x 1 root root 30108 Jan 10 2019 umount -rwxr-xr-x 1 root root 34532 Mar 1 2019 uname -rwxr-xr-x 2 root root 2345 Jan 6 2019 uncompress -rwxr-xr-x 1 root root 149736 Mar 1 2019 vdir -rwxr-xr-x 1 root root 34208 Jan 10 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 22 2019 which lrwxrwxrwx 1 root root 8 Sep 27 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 6 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 6 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 6 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 6 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 6 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 6 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 6 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 6 2019 zless -rwxr-xr-x 1 root root 1841 Jan 6 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 6 2019 znew I: user script /srv/workspace/pbuilder/10114/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 10 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 11 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 12 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 14 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 24 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 26 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 27 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 28 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 29 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 30 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 31 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Fetched 19.4 MB in 6s (3387 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../02-libuchardet0_0.0.6-3_i386.deb ... Unpacking libuchardet0:i386 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_i386.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../04-libpipeline1_1.5.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_i386.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_i386.deb ... Unpacking libmagic1:i386 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_i386.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_i386.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../11-libsigsegv2_2.12-2_i386.deb ... Unpacking libsigsegv2:i386 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_i386.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../22-libelf1_0.176-1.1_i386.deb ... Unpacking libelf1:i386 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.12-3_i386.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../24-libglib2.0-0_2.58.3-2+deb10u2_i386.deb ... Unpacking libglib2.0-0:i386 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:i386. Preparing to unpack .../25-libicu63_63.1-6+deb10u1_i386.deb ... Unpacking libicu63:i386 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.4+dfsg1-7+b3_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../27-libcroco3_0.6.12-3_i386.deb ... Unpacking libcroco3:i386 (0.6.12-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../28-libncurses6_6.1+20181013-2+deb10u2_i386.deb ... Unpacking libncurses6:i386 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.19.8.1-9_i386.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... 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Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ncbi-seg dpkg-buildpackage: info: source version 0.0.20000620-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config debian/rules override_dh_autoreconf make[1]: Entering directory '/build/ncbi-seg-0.0.20000620' dh_autoreconf -X./COPYING configure.ac:5: installing './compile' configure.ac:3: installing './install-sh' configure.ac:3: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './depcomp' make[1]: Leaving directory '/build/ncbi-seg-0.0.20000620' dh_auto_configure ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j10 make[1]: Entering directory '/build/ncbi-seg-0.0.20000620' gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ncbi-seg-0.0.20000620=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seg.o seg.c gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/ncbi-seg-0.0.20000620=. -fstack-protector-strong -Wformat -Werror=format-security -c -o genwin.o genwin.c sed -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/ncbi-seg|g;s|__pkgdatadir__|/usr/share/ncbi-seg|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|0.0.20000620|g;' "ncbi-seg.pod" | \ pod2man -c 'User Commands' -r "0.0.20000620" -name NCBI-SEG > "ncbi-seg.1" In file included from genwin.c:9: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] extern closedbase(); ^~~~~~~~~~ In file included from seg.c:10: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] extern closedbase(); ^~~~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] extern closeseq(); ^~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] extern closeseq(); ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] extern shiftwin(), closewin(); ^~~~~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] extern shiftwin(), closewin(); ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] extern shiftwin(), closewin(); ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] extern shiftwin(), closewin(); ^~~~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] extern compon(), stateon(), enton(); ^~~~~~ genwin.h:154:8: warning: type defaults to 'int' in declaration of 'compon' [-Wimplicit-int] extern compon(), stateon(), enton(); ^~~~~~ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] extern compon(), stateon(), enton(); ^~~~~~~ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] extern compon(), stateon(), enton(); ^~~~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] extern compon(), stateon(), enton(); ^~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] extern compon(), stateon(), enton(); ^~~~~ genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int] extern closemat(); ^~~~~~~~ genwin.h:158:8: warning: type defaults to 'int' in declaration of 'closemat' [-Wimplicit-int] extern closemat(); ^~~~~~~~ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] extern upper(), lower(), findchar(); ^~~~~ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] extern upper(), lower(), findchar(); ^~~~~ genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] extern upper(), lower(), findchar(); ^~~~~ genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] extern upper(), lower(), findchar(); ^~~~~ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] extern upper(), lower(), findchar(); ^~~~~~~~ genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] extern upper(), lower(), findchar(); ^~~~~~~~ genwin.c:62:1: warning: return type defaults to 'int' [-Wimplicit-int] genwininit() ^~~~~~~~~~ genwin.c: In function 'opendbase': genwin.c:93:8: warning: implicit declaration of function 'blastdb' [-Wimplicit-function-declaration] if (blastdb(name)) ^~~~~~~ genwin.c: At top level: genwin.c:144:8: warning: return type defaults to 'int' [-Wimplicit-int] extern closedbase(dbase) ^~~~~~~~~~ genwin.c:185:8: warning: return type defaults to 'int' [-Wimplicit-int] extern closeseq(seq) ^~~~~~~~ genwin.c:319:8: warning: return type defaults to 'int' [-Wimplicit-int] extern closewin(win) ^~~~~~~~ genwin.c:336:8: warning: return type defaults to 'int' [-Wimplicit-int] extern compon(win) ^~~~~~ genwin.c:364:8: warning: return type defaults to 'int' [-Wimplicit-int] extern stateon(win) ^~~~~~~ genwin.c:389:8: warning: return type defaults to 'int' [-Wimplicit-int] extern enton(win) ^~~~~ genwin.c: In function 'readentry': genwin.c:510:9: warning: implicit declaration of function 'readhdr'; did you mean 'readentry'? [-Wimplicit-function-declaration] if (!readhdr(seq)) ^~~~~~~ readentry genwin.c:528:4: warning: implicit declaration of function 'readseq'; did you mean 'nextseq'? [-Wimplicit-function-declaration] readseq(seq); ^~~~~~~ nextseq genwin.c: At top level: genwin.c:545:1: warning: return type defaults to 'int' [-Wimplicit-int] readhdr(seq) ^~~~~~~ genwin.c: In function 'readhdr': genwin.c:670:10: warning: implicit declaration of function 'skipline'; did you mean 'getline'? [-Wimplicit-function-declaration] skipline(fp); ^~~~~~~~ getline genwin.c: At top level: genwin.c:684:1: warning: return type defaults to 'int' [-Wimplicit-int] skipline(fp) ^~~~~~~~ genwin.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] readseq(seq) ^~~~~~~ genwin.c:794:8: warning: return type defaults to 'int' [-Wimplicit-int] extern upper(string, len) ^~~~~ genwin.c:807:8: warning: return type defaults to 'int' [-Wimplicit-int] extern lower(string, len) ^~~~~ genwin.c:862:1: warning: return type defaults to 'int' [-Wimplicit-int] tfree(ptr) ^~~~~ seg.c:49:1: warning: return type defaults to 'int' [-Wimplicit-int] main(argc, argv) ^~~~ seg.c: In function 'main': seg.c:58:4: warning: implicit declaration of function 'genwininit' [-Wimplicit-function-declaration] genwininit(); ^~~~~~~~~~ seg.c:60:4: warning: implicit declaration of function 'getparams'; did you mean 'getprob'? [-Wimplicit-function-declaration] getparams(argc, argv); ^~~~~~~~~ getprob seg.c:61:4: warning: implicit declaration of function 'entropy_init'; did you mean 'entropy'? [-Wimplicit-function-declaration] entropy_init(window); ^~~~~~~~~~~~ entropy seg.c:72:7: warning: implicit declaration of function 'segseq'; did you mean 'nextseq'? [-Wimplicit-function-declaration] segseq(seq, &segs, 0); ^~~~~~ nextseq seg.c:73:7: warning: implicit declaration of function 'mergesegs' [-Wimplicit-function-declaration] mergesegs(seq, segs); ^~~~~~~~~ seg.c:75:22: warning: implicit declaration of function 'singreport' [-Wimplicit-function-declaration] if (singleseq) singreport(seq, segs); ^~~~~~~~~~ seg.c:76:27: warning: implicit declaration of function 'prettyreport' [-Wimplicit-function-declaration] else if (prettyseq) prettyreport(seq, segs); ^~~~~~~~~~~~ seg.c:77:28: warning: implicit declaration of function 'pretreereport' [-Wimplicit-function-declaration] else if (prettytree) pretreereport(seq, segs); ^~~~~~~~~~~~~ seg.c:78:12: warning: implicit declaration of function 'report'; did you mean 'hypot'? [-Wimplicit-function-declaration] else report(seq, segs); ^~~~~~ hypot seg.c:80:7: warning: implicit declaration of function 'freesegs'; did you mean 'free'? [-Wimplicit-function-declaration] freesegs(segs); ^~~~~~~~ free seg.c: At top level: seg.c:90:1: warning: return type defaults to 'int' [-Wimplicit-int] getparams(argc, argv) ^~~~~~~~~ seg.c: In function 'getparams': seg.c:103:7: warning: implicit declaration of function 'usage' [-Wimplicit-function-declaration] usage(); ^~~~~ seg.c:137:14: warning: implicit declaration of function 'getopt'; did you mean 'getsubopt'? [-Wimplicit-function-declaration] while ((c=getopt(nargc, nargv, "m:olhaxpqc:nt:"))!=-1) ^~~~~~ getsubopt seg.c: At top level: seg.c:210:1: warning: return type defaults to 'int' [-Wimplicit-int] segseq(seq, segs, offset) ^~~~~~ seg.c: In function 'segseq': seg.c:233:16: warning: implicit declaration of function 'findlo'; did you mean 'fminl'? [-Wimplicit-function-declaration] loi = findlo(i, lowlim, H); ^~~~~~ fminl seg.c:234:16: warning: implicit declaration of function 'findhi'; did you mean 'findchar'? [-Wimplicit-function-declaration] hii = findhi(i, last, H); ^~~~~~ findchar seg.c:239:10: warning: implicit declaration of function 'trim'; did you mean 'fdim'? [-Wimplicit-function-declaration] trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); ^~~~ fdim seg.c:252:21: warning: implicit declaration of function 'appendseg'; did you mean 'openseq'? [-Wimplicit-function-declaration] else appendseg(*segs, leftsegs); ^~~~~~~~~ openseq seg.c:273:14: warning: implicit declaration of function 'min'; did you mean 'main'? [-Wimplicit-function-declaration] i = min(hii, rightend+downset); ^~~ main seg.c: In function 'seqent': seg.c:312:31: warning: implicit declaration of function 'hasdash' [-Wimplicit-function-declaration] if (seq->punctuation && hasdash(win)) ^~~~~~~ seg.c:314:10: warning: implicit declaration of function 'shiftwin1'; did you mean 'shiftwin'? [-Wimplicit-function-declaration] shiftwin1(win); ^~~~~~~~~ shiftwin seg.c: At top level: seg.c:326:1: warning: return type defaults to 'int' [-Wimplicit-int] hasdash(win) ^~~~~~~ seg.c:343:1: warning: return type defaults to 'int' [-Wimplicit-int] findlo(i, limit, H) ^~~~~~ seg.c:360:1: warning: return type defaults to 'int' [-Wimplicit-int] findhi(i, limit, H) ^~~~~~ seg.c:377:1: warning: return type defaults to 'int' [-Wimplicit-int] trim(seq, leftend, rightend) ^~~~ seg.c:507:1: warning: return type defaults to 'int' [-Wimplicit-int] mergesegs(seq, segs) ^~~~~~~~~ seg.c:553:1: warning: return type defaults to 'int' [-Wimplicit-int] report(seq, segs) ^~~~~~ seg.c: In function 'report': seg.c:565:7: warning: implicit declaration of function 'seqout'; did you mean 'seqent'? [-Wimplicit-function-declaration] seqout(seq, hi, 1, seq->length); ^~~~~~ seqent seg.c: At top level: seg.c:626:1: warning: return type defaults to 'int' [-Wimplicit-int] singreport(seq, segs) ^~~~~~~~~~ seg.c:663:1: warning: return type defaults to 'int' [-Wimplicit-int] prettyreport(seq, segs) ^~~~~~~~~~~~ seg.c: In function 'prettyreport': seg.c:687:2: warning: implicit declaration of function 'space'; did you mean 'isspace'? [-Wimplicit-function-declaration] space(leftspace+1); ^~~~~ isspace seg.c: At top level: seg.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] pretreereport(seq, segs) ^~~~~~~~~~~~~ seg.c:811:1: warning: return type defaults to 'int' [-Wimplicit-int] space(len) ^~~~~ seg.c:832:1: warning: return type defaults to 'int' [-Wimplicit-int] seqout(seq, hilo, begin, end) ^~~~~~ seg.c:906:1: warning: return type defaults to 'int' [-Wimplicit-int] appendseg(segs, seg) ^~~~~~~~~ seg.c:930:1: warning: return type defaults to 'int' [-Wimplicit-int] freesegs(segs) ^~~~~~~~ seg.c:945:1: warning: return type defaults to 'int' [-Wimplicit-int] usage() ^~~~~ gcc -g -O2 -ffile-prefix-map=/build/ncbi-seg-0.0.20000620=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o ncbi-seg seg.o genwin.o -lm make[1]: Leaving directory '/build/ncbi-seg-0.0.20000620' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j10 install DESTDIR=/build/ncbi-seg-0.0.20000620/debian/ncbi-seg AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/ncbi-seg-0.0.20000620' make[2]: Entering directory '/build/ncbi-seg-0.0.20000620' /bin/mkdir -p '/build/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/bin' /bin/mkdir -p '/build/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/share/man/man1' /usr/bin/install -c ncbi-seg '/build/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/bin' /usr/bin/install -c -m 644 ncbi-seg.1 '/build/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/share/man/man1' make[2]: Leaving directory '/build/ncbi-seg-0.0.20000620' make[1]: Leaving directory '/build/ncbi-seg-0.0.20000620' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-5_i386.deb'. dpkg-deb: building package 'ncbi-seg' in '../ncbi-seg_0.0.20000620-5_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ncbi-seg_0.0.20000620-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/10114/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/10114/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10114 and its subdirectories I: Current time: Sun Aug 9 03:22:08 +14 2020 I: pbuilder-time-stamp: 1596892928