I: pbuilder: network access will be disabled during build I: Current time: Sun May 10 22:49:04 +14 2020 I: pbuilder-time-stamp: 1589100544 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-cobra_0.14.1-1.dsc] I: copying [./python-cobra_0.14.1.orig.tar.gz] I: copying [./python-cobra_0.14.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 18 22:50:31 2018 +14 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-cobra_0.14.1-1.dsc dpkg-source: info: extracting python-cobra in python-cobra-0.14.1 dpkg-source: info: unpacking python-cobra_0.14.1.orig.tar.gz dpkg-source: info: unpacking python-cobra_0.14.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying mathjax.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25957/tmp/hooks/D01_modify_environment starting debug: Running on profitbricks-build2-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash Removing 'diversion of /bin/sh to /bin/sh.distrib by dash' Adding 'diversion of /bin/sh to /bin/sh.distrib by bash' Removing 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash' Adding 'diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by bash' I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/25957/tmp/hooks/D01_modify_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, libglpk-dev, python3-all, python3-all-dev, python3-setuptools, python3-depinfo, python3-future, python3-numpy, python3-optlang, python3-ruamel.yaml, python3-pandas (>= 0.17.0), python3-pip, python3-pipdeptree (>= 0.13.1), python3-requests, python3-swiglpk, python3-tabulate, cython3, python3-pytest, python3-pytest-benchmark, python3-jsonschema (>> 2.5.0) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libglpk-dev; however: Package libglpk-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-depinfo; however: Package python3-depinfo is not installed. pbuilder-satisfydepends-dummy depends on python3-future; however: Package python3-future is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-optlang; however: Package python3-optlang is not installed. pbuilder-satisfydepends-dummy depends on python3-ruamel.yaml; however: Package python3-ruamel.yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas (>= 0.17.0); however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pipdeptree (>= 0.13.1); however: Package python3-pipdeptree is not installed. pbuilder-satisfydepends-dummy depends on python3-requests; however: Package python3-requests is not installed. pbuilder-satisfydepends-dummy depends on python3-swiglpk; however: Package python3-swiglpk is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-benchmark; however: Package python3-pytest-benchmark is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema (>> 2.5.0); however: Package python3-jsonschema is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libamd2{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbsd0{a} libbtf1{a} libcamd2{a} libccolamd2{a} libcholmod3{a} libcolamd2{a} libcroco3{a} libcxsparse3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libglpk-dev{a} libglpk40{a} libgmp-dev{a} libgmpxx4ldbl{a} libgraphblas2{a} libicu63{a} libklu1{a} liblapack-dev{a} liblapack3{a} libldl2{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmetis5{a} libmongoose2{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} librbio2{a} libreadline7{a} libsigsegv2{a} libspqr2{a} libssl1.1{a} libsuitesparse-dev{a} libsuitesparseconfig5{a} libtool{a} libuchardet0{a} libumfpack5{a} libxml2{a} m4{a} man-db{a} mime-support{a} openssl{a} po-debconf{a} python-pip-whl{a} python3{a} python3-all{a} python3-all-dev{a} python3-atomicwrites{a} python3-attr{a} python3-certifi{a} python3-chardet{a} python3-cpuinfo{a} python3-dateutil{a} python3-depinfo{a} python3-dev{a} python3-distutils{a} python3-future{a} python3-idna{a} python3-jsonschema{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-optlang{a} python3-pandas{a} python3-pandas-lib{a} python3-pip{a} python3-pipdeptree{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pytest{a} python3-pytest-benchmark{a} python3-requests{a} python3-ruamel.yaml{a} python3-setuptools{a} python3-six{a} python3-swiglpk{a} python3-sympy{a} python3-tabulate{a} python3-tz{a} python3-urllib3{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl ipython3 libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-elasticsearch python3-html5lib python3-lxml python3-matplotlib python3-numexpr python3-pil python3-scipy python3-tables python3-wheel shared-mime-info wget xdg-user-dirs 0 packages upgraded, 122 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After unpacking 401 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main i386 libbsd0 i386 0.9.1-2 [104 kB] Get: 2 http://deb.debian.org/debian buster/main i386 bsdmainutils i386 11.1.2+b1 [193 kB] Get: 3 http://deb.debian.org/debian buster/main i386 libuchardet0 i386 0.0.6-3 [65.2 kB] Get: 4 http://deb.debian.org/debian buster/main i386 groff-base i386 1.22.4-3 [935 kB] Get: 5 http://deb.debian.org/debian buster/main i386 libpipeline1 i386 1.5.1-2 [33.3 kB] Get: 6 http://deb.debian.org/debian buster/main i386 man-db i386 2.8.5-2 [1284 kB] Get: 7 http://deb.debian.org/debian buster/main i386 libssl1.1 i386 1.1.1d-0+deb10u3 [1537 kB] Get: 8 http://deb.debian.org/debian buster/main i386 libpython3.7-minimal i386 3.7.3-2+deb10u1 [590 kB] Get: 9 http://deb.debian.org/debian buster/main i386 libexpat1 i386 2.2.6-2+deb10u1 [104 kB] Get: 10 http://deb.debian.org/debian buster/main i386 python3.7-minimal i386 3.7.3-2+deb10u1 [1745 kB] Get: 11 http://deb.debian.org/debian buster/main i386 python3-minimal i386 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main i386 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main i386 libmpdec2 i386 2.4.2-2 [83.2 kB] Get: 14 http://deb.debian.org/debian buster/main i386 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main i386 libreadline7 i386 7.0-5 [156 kB] Get: 16 http://deb.debian.org/debian buster/main i386 libpython3.7-stdlib i386 3.7.3-2+deb10u1 [1750 kB] Get: 17 http://deb.debian.org/debian buster/main i386 python3.7 i386 3.7.3-2+deb10u1 [330 kB] Get: 18 http://deb.debian.org/debian buster/main i386 libpython3-stdlib i386 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main i386 python3 i386 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main i386 sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://deb.debian.org/debian buster/main i386 libmagic-mgc i386 1:5.35-4+deb10u1 [242 kB] Get: 22 http://deb.debian.org/debian buster/main i386 libmagic1 i386 1:5.35-4+deb10u1 [124 kB] Get: 23 http://deb.debian.org/debian buster/main i386 file i386 1:5.35-4+deb10u1 [66.3 kB] Get: 24 http://deb.debian.org/debian buster/main i386 gettext-base i386 0.19.8.1-9 [124 kB] Get: 25 http://deb.debian.org/debian buster/main i386 libsigsegv2 i386 2.12-2 [33.2 kB] Get: 26 http://deb.debian.org/debian buster/main i386 m4 i386 1.4.18-2 [205 kB] Get: 27 http://deb.debian.org/debian buster/main i386 autoconf all 2.69-11 [341 kB] Get: 28 http://deb.debian.org/debian buster/main i386 autotools-dev all 20180224.1 [77.0 kB] Get: 29 http://deb.debian.org/debian buster/main i386 automake all 1:1.16.1-4 [771 kB] Get: 30 http://deb.debian.org/debian buster/main i386 autopoint all 0.19.8.1-9 [434 kB] Get: 31 http://deb.debian.org/debian buster/main i386 openssl i386 1.1.1d-0+deb10u3 [853 kB] Get: 32 http://deb.debian.org/debian buster/main i386 ca-certificates all 20190110 [157 kB] Get: 33 http://deb.debian.org/debian buster/main i386 cython3 i386 0.29.2-2 [1297 kB] Get: 34 http://deb.debian.org/debian buster/main i386 libtool all 2.4.6-9 [547 kB] Get: 35 http://deb.debian.org/debian buster/main i386 dh-autoreconf all 19 [16.9 kB] Get: 36 http://deb.debian.org/debian buster/main i386 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 37 http://deb.debian.org/debian buster/main i386 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 38 http://deb.debian.org/debian buster/main i386 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 39 http://deb.debian.org/debian buster/main i386 libelf1 i386 0.176-1.1 [166 kB] Get: 40 http://deb.debian.org/debian buster/main i386 dwz i386 0.12-3 [81.4 kB] Get: 41 http://deb.debian.org/debian buster/main i386 libglib2.0-0 i386 2.58.3-2+deb10u2 [1334 kB] Get: 42 http://deb.debian.org/debian buster/main i386 libicu63 i386 63.1-6+deb10u1 [8451 kB] Get: 43 http://deb.debian.org/debian buster/main i386 libxml2 i386 2.9.4+dfsg1-7+b3 [721 kB] Get: 44 http://deb.debian.org/debian buster/main i386 libcroco3 i386 0.6.12-3 [151 kB] Get: 45 http://deb.debian.org/debian buster/main i386 libncurses6 i386 6.1+20181013-2+deb10u2 [109 kB] Get: 46 http://deb.debian.org/debian buster/main i386 gettext i386 0.19.8.1-9 [1314 kB] Get: 47 http://deb.debian.org/debian buster/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 48 http://deb.debian.org/debian buster/main i386 po-debconf all 1.0.21 [248 kB] Get: 49 http://deb.debian.org/debian buster/main i386 debhelper all 12.1.1 [1016 kB] Get: 50 http://deb.debian.org/debian buster/main i386 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 51 http://deb.debian.org/debian buster/main i386 python3-distutils all 3.7.3-1 [142 kB] Get: 52 http://deb.debian.org/debian buster/main i386 dh-python all 3.20190308 [99.3 kB] Get: 53 http://deb.debian.org/debian buster/main i386 libsuitesparseconfig5 i386 1:5.4.0+dfsg-1 [21.0 kB] Get: 54 http://deb.debian.org/debian buster/main i386 libamd2 i386 1:5.4.0+dfsg-1 [28.2 kB] Get: 55 http://deb.debian.org/debian buster/main i386 libgfortran5 i386 8.3.0-6 [549 kB] Get: 56 http://deb.debian.org/debian buster/main i386 libblas3 i386 3.8.0-2 [142 kB] Get: 57 http://deb.debian.org/debian buster/main i386 libblas-dev i386 3.8.0-2 [150 kB] Get: 58 http://deb.debian.org/debian buster/main i386 libbtf1 i386 1:5.4.0+dfsg-1 [21.3 kB] Get: 59 http://deb.debian.org/debian buster/main i386 libcamd2 i386 1:5.4.0+dfsg-1 [28.9 kB] Get: 60 http://deb.debian.org/debian buster/main i386 libccolamd2 i386 1:5.4.0+dfsg-1 [30.1 kB] Get: 61 http://deb.debian.org/debian buster/main i386 libcolamd2 i386 1:5.4.0+dfsg-1 [26.0 kB] Get: 62 http://deb.debian.org/debian buster/main i386 liblapack3 i386 3.8.0-2 [1974 kB] Get: 63 http://deb.debian.org/debian buster/main i386 libmetis5 i386 5.1.0.dfsg-5+b2 [173 kB] Get: 64 http://deb.debian.org/debian buster/main i386 libcholmod3 i386 1:5.4.0+dfsg-1 [251 kB] Get: 65 http://deb.debian.org/debian buster/main i386 libcxsparse3 i386 1:5.4.0+dfsg-1 [61.6 kB] Get: 66 http://deb.debian.org/debian buster/main i386 libexpat1-dev i386 2.2.6-2+deb10u1 [156 kB] Get: 67 http://deb.debian.org/debian buster/main i386 libltdl7 i386 2.4.6-9 [392 kB] Get: 68 http://deb.debian.org/debian buster/main i386 libglpk40 i386 4.65-2 [438 kB] Get: 69 http://deb.debian.org/debian buster/main i386 libgmpxx4ldbl i386 2:6.1.2+dfsg-4 [23.2 kB] Get: 70 http://deb.debian.org/debian buster/main i386 libgmp-dev i386 2:6.1.2+dfsg-4 [648 kB] Get: 71 http://deb.debian.org/debian buster/main i386 zlib1g-dev i386 1:1.2.11.dfsg-1 [216 kB] Get: 72 http://deb.debian.org/debian buster/main i386 libgraphblas2 i386 1:5.4.0+dfsg-1 [2597 kB] Get: 73 http://deb.debian.org/debian buster/main i386 libklu1 i386 1:5.4.0+dfsg-1 [55.8 kB] Get: 74 http://deb.debian.org/debian buster/main i386 libldl2 i386 1:5.4.0+dfsg-1 [21.1 kB] Get: 75 http://deb.debian.org/debian buster/main i386 libmongoose2 i386 1:5.4.0+dfsg-1 [47.0 kB] Get: 76 http://deb.debian.org/debian buster/main i386 libumfpack5 i386 1:5.4.0+dfsg-1 [149 kB] Get: 77 http://deb.debian.org/debian buster/main i386 librbio2 i386 1:5.4.0+dfsg-1 [31.9 kB] Get: 78 http://deb.debian.org/debian buster/main i386 libspqr2 i386 1:5.4.0+dfsg-1 [80.5 kB] Get: 79 http://deb.debian.org/debian buster/main i386 liblapack-dev i386 3.8.0-2 [2035 kB] Get: 80 http://deb.debian.org/debian buster/main i386 libsuitesparse-dev i386 1:5.4.0+dfsg-1 [3308 kB] Get: 81 http://deb.debian.org/debian buster/main i386 libglpk-dev i386 4.65-2 [521 kB] Get: 82 http://deb.debian.org/debian buster/main i386 libpython3.7 i386 3.7.3-2+deb10u1 [1506 kB] Get: 83 http://deb.debian.org/debian buster/main i386 libpython3.7-dev i386 3.7.3-2+deb10u1 [47.7 MB] Get: 84 http://deb.debian.org/debian buster/main i386 libpython3-dev i386 3.7.3-1 [20.2 kB] Get: 85 http://deb.debian.org/debian buster/main i386 libpython3-all-dev i386 3.7.3-1 [1068 B] Get: 86 http://deb.debian.org/debian buster/main i386 python-pip-whl all 18.1-5 [1591 kB] Get: 87 http://deb.debian.org/debian buster/main i386 python3-all i386 3.7.3-1 [1068 B] Get: 88 http://deb.debian.org/debian buster/main i386 python3.7-dev i386 3.7.3-2+deb10u1 [509 kB] Get: 89 http://deb.debian.org/debian buster/main i386 python3-dev i386 3.7.3-1 [1260 B] Get: 90 http://deb.debian.org/debian buster/main i386 python3-all-dev i386 3.7.3-1 [1068 B] Get: 91 http://deb.debian.org/debian buster/main i386 python3-atomicwrites all 1.1.5-2 [6892 B] Get: 92 http://deb.debian.org/debian buster/main i386 python3-attr all 18.2.0-1 [37.3 kB] Get: 93 http://deb.debian.org/debian buster/main i386 python3-certifi all 2018.8.24-1 [140 kB] Get: 94 http://deb.debian.org/debian buster/main i386 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 95 http://deb.debian.org/debian buster/main i386 python3-chardet all 3.0.4-3 [80.5 kB] Get: 96 http://deb.debian.org/debian buster/main i386 python3-cpuinfo all 4.0.0-1 [18.6 kB] Get: 97 http://deb.debian.org/debian buster/main i386 python3-six all 1.12.0-1 [15.7 kB] Get: 98 http://deb.debian.org/debian buster/main i386 python3-dateutil all 2.7.3-3 [64.5 kB] Get: 99 http://deb.debian.org/debian buster/main i386 python3-pip all 18.1-5 [171 kB] Get: 100 http://deb.debian.org/debian buster/main i386 python3-pipdeptree i386 0.13.2-1 [15.5 kB] Get: 101 http://deb.debian.org/debian buster/main i386 python3-depinfo i386 1.4.0-1 [5300 B] Get: 102 http://deb.debian.org/debian buster/main i386 python3-future all 0.16.0-1 [346 kB] Get: 103 http://deb.debian.org/debian buster/main i386 python3-idna all 2.6-1 [34.3 kB] Get: 104 http://deb.debian.org/debian buster/main i386 python3-jsonschema all 2.6.0-4 [33.5 kB] Get: 105 http://deb.debian.org/debian buster/main i386 python3-more-itertools all 4.2.0-1 [42.2 kB] Get: 106 http://deb.debian.org/debian buster/main i386 python3-mpmath all 1.1.0-1 [416 kB] Get: 107 http://deb.debian.org/debian buster/main i386 python3-numpy i386 1:1.16.2-1 [2115 kB] Get: 108 http://deb.debian.org/debian buster/main i386 python3-swiglpk i386 4.65.0-1 [63.2 kB] Get: 109 http://deb.debian.org/debian buster/main i386 python3-sympy all 1.3-2 [3500 kB] Get: 110 http://deb.debian.org/debian buster/main i386 python3-optlang all 1.4.4-1 [67.6 kB] Get: 111 http://deb.debian.org/debian buster/main i386 python3-tz all 2019.1-1 [27.1 kB] Get: 112 http://deb.debian.org/debian buster/main i386 python3-pandas-lib i386 0.23.3+dfsg-3 [2890 kB] Get: 113 http://deb.debian.org/debian buster/main i386 python3-pandas all 0.23.3+dfsg-3 [1750 kB] Get: 114 http://deb.debian.org/debian buster/main i386 python3-pluggy all 0.8.0-1 [20.6 kB] Get: 115 http://deb.debian.org/debian buster/main i386 python3-py all 1.7.0-2 [86.6 kB] Get: 116 http://deb.debian.org/debian buster/main i386 python3-pytest all 3.10.1-2 [243 kB] Get: 117 http://deb.debian.org/debian buster/main i386 python3-pytest-benchmark all 3.2.2-1 [46.3 kB] Get: 118 http://deb.debian.org/debian buster/main i386 python3-urllib3 all 1.24.1-1 [97.1 kB] Get: 119 http://deb.debian.org/debian buster/main i386 python3-requests all 2.21.0-1 [66.9 kB] Get: 120 http://deb.debian.org/debian buster/main i386 python3-ruamel.yaml i386 0.15.34-1+b1 [227 kB] Get: 121 http://deb.debian.org/debian buster/main i386 python3-setuptools all 40.8.0-1 [306 kB] Get: 122 http://deb.debian.org/debian buster/main i386 python3-tabulate all 0.8.2-1 [32.1 kB] Fetched 107 MB in 35s (3053 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19234 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2_i386.deb ... Unpacking libbsd0:i386 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_i386.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../2-libuchardet0_0.0.6-3_i386.deb ... 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Unpacking python3-pytest (3.10.1-2) ... Selecting previously unselected package python3-pytest-benchmark. Preparing to unpack .../098-python3-pytest-benchmark_3.2.2-1_all.deb ... Unpacking python3-pytest-benchmark (3.2.2-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../099-python3-urllib3_1.24.1-1_all.deb ... Unpacking python3-urllib3 (1.24.1-1) ... Selecting previously unselected package python3-requests. Preparing to unpack .../100-python3-requests_2.21.0-1_all.deb ... Unpacking python3-requests (2.21.0-1) ... Selecting previously unselected package python3-ruamel.yaml. Preparing to unpack .../101-python3-ruamel.yaml_0.15.34-1+b1_i386.deb ... Unpacking python3-ruamel.yaml (0.15.34-1+b1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../102-python3-setuptools_40.8.0-1_all.deb ... Unpacking python3-setuptools (40.8.0-1) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../103-python3-tabulate_0.8.2-1_all.deb ... Unpacking python3-tabulate (0.8.2-1) ... Setting up libpipeline1:i386 (1.5.1-2) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:i386 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:i386 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libmetis5:i386 (5.1.0.dfsg-5+b2) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:i386 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libgmpxx4ldbl:i386 (2:6.1.2+dfsg-4) ... Setting up libexpat1-dev:i386 (2.2.6-2+deb10u1) ... Setting up libncurses6:i386 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:i386 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libltdl7:i386 (2.4.6-9) ... Setting up libgfortran5:i386 (8.3.0-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:i386 (0.0.6-3) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up openssl (1.1.1d-0+deb10u3) ... Setting up libbsd0:i386 (0.9.1-2) ... Setting up libelf1:i386 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:i386 (2.9.4+dfsg1-7+b3) ... Setting up libsuitesparseconfig5:i386 (1:5.4.0+dfsg-1) ... Setting up librbio2:i386 (1:5.4.0+dfsg-1) ... Setting up libreadline7:i386 (7.0-5) ... Setting up libgraphblas2:i386 (1:5.4.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libpython3.7-stdlib:i386 (3.7.3-2+deb10u1) ... Setting up libgmp-dev:i386 (2:6.1.2+dfsg-4) ... Setting up libcolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libpython3.7:i386 (3.7.3-2+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-dev:i386 (3.7.3-2+deb10u1) ... Setting up libldl2:i386 (1:5.4.0+dfsg-1) ... Setting up m4 (1.4.18-2) ... Setting up libbtf1:i386 (1:5.4.0+dfsg-1) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up libcamd2:i386 (1:5.4.0+dfsg-1) ... Setting up libmongoose2:i386 (1:5.4.0+dfsg-1) ... Setting up libblas3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libglpk40:i386 (4.65-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:i386 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libklu1:i386 (1:5.4.0+dfsg-1) ... Setting up libccolamd2:i386 (1:5.4.0+dfsg-1) ... Setting up python-pip-whl (18.1-5) ... Setting up libcxsparse3:i386 (1:5.4.0+dfsg-1) ... Setting up libblas-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libpython3-stdlib:i386 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u1) ... Setting up liblapack3:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:i386 (3.7.3-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.7-dev (3.7.3-2+deb10u1) ... Setting up python3-tz (2019.1-1) ... Setting up python3-atomicwrites (1.1.5-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-six (1.12.0-1) ... Setting up python3-certifi (2018.8.24-1) ... Setting up libpython3-all-dev:i386 (3.7.3-1) ... Setting up liblapack-dev:i386 (3.8.0-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up python3-idna (2.6-1) ... Setting up cython3 (0.29.2-2) ... Setting up python3-cpuinfo (4.0.0-1) ... Setting up python3-urllib3 (1.24.1-1) ... Setting up python3-pluggy (0.8.0-1) ... Setting up python3-ruamel.yaml (0.15.34-1+b1) ... Setting up python3-dateutil (2.7.3-3) ... Setting up python3-mpmath (1.1.0-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python3-swiglpk (4.65.0-1) ... Setting up libcholmod3:i386 (1:5.4.0+dfsg-1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up python3-more-itertools (4.2.0-1) ... Setting up python3-sympy (1.3-2) ... Setting up python3-attr (18.2.0-1) ... Setting up libspqr2:i386 (1:5.4.0+dfsg-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python3-py (1.7.0-2) ... Setting up python3-pytest (3.10.1-2) ... Setting up po-debconf (1.0.21) ... Setting up python3-tabulate (0.8.2-1) ... Setting up python3-all (3.7.3-1) ... Setting up python3-chardet (3.0.4-3) ... Setting up libumfpack5:i386 (1:5.4.0+dfsg-1) ... Setting up python3-jsonschema (2.6.0-4) ... update-alternatives: using /usr/bin/python3-jsonschema to provide /usr/bin/jsonschema (jsonschema) in auto mode Setting up python3-dev (3.7.3-1) ... Setting up python3-requests (2.21.0-1) ... Setting up python3-pip (18.1-5) ... Setting up python3-numpy (1:1.16.2-1) ... Setting up python3-future (0.16.0-1) ... update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode Setting up python3-pipdeptree (0.13.2-1) ... Setting up python3-optlang (1.4.4-1) ... Setting up python3-pytest-benchmark (3.2.2-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libsuitesparse-dev:i386 (1:5.4.0+dfsg-1) ... Setting up python3-pandas-lib (0.23.3+dfsg-3) ... Setting up python3-pandas (0.23.3+dfsg-3) ... Setting up libglpk-dev:i386 (4.65-2) ... Setting up python3-depinfo (1.4.0-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-cobra-0.14.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.14.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Verzeichnis „/build/python-cobra-0.14.1“ wird betreten dh_auto_clean I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -f cobra/solvers/cglpk.c make[1]: Verzeichnis „/build/python-cobra-0.14.1“ wird verlassen dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra copying cobra/exceptions.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra copying cobra/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test copying cobra/test/conftest.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test copying cobra/test/test_medium.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test copying cobra/test/test_manipulation.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test copying cobra/test/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/room.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/sampling.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/reaction.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/summary.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/moma.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/deletion.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/loopless.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/geometric.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis copying cobra/flux_analysis/variability.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium copying cobra/medium/minimal_medium.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium copying cobra/medium/boundary_types.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium copying cobra/medium/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation copying cobra/manipulation/annotate.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation copying cobra/manipulation/delete.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation copying cobra/manipulation/modify.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation copying cobra/manipulation/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation copying cobra/manipulation/validate.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/formula.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/reaction.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/solution.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/object.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/model.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/dictlist.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/metabolite.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/gene.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/species.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/singleton.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/configuration.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core copying cobra/core/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util copying cobra/util/array.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util copying cobra/util/solver.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util copying cobra/util/context.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util copying cobra/util/util.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util copying cobra/util/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/yaml.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/mat.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/dict.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/json.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/sbml3.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/sbml.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io copying cobra/io/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/conftest.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_mat.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_io_order.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_pickle.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_sbml.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_json.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_sbml3.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/__init__.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io copying cobra/test/test_io/test_yaml.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io creating /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/salmonella.pickle -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini.mat -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/salmonella.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/iJO1366.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/invalid2.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc2.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/invalid0.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/invalid1.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/iJO1366.pickle -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/salmonella.genes -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini.pickle -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/textbook_solution.pickle -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/textbook.xml.gz -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini.json -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/raven.pickle -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/update_pickles.py -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/textbook_fva.json -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/salmonella.media -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini.yml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/raven.mat -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini_cobra.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data copying cobra/test/data/mini_fbc1.xml -> /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest ============================= test session starts ============================== platform linux -- Python 3.7.3, pytest-3.10.1, py-1.7.0, pluggy-0.8.0 benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/python-cobra-0.14.1, inifile: setup.cfg plugins: benchmark-3.2.2 collected 76 items cobra/test/test_manipulation.py ........... [ 14%] cobra/test/test_medium.py .............. [ 32%] cobra/test/test_io/test_io_order.py ........................... [ 68%] cobra/test/test_io/test_json.py x.x [ 72%] cobra/test/test_io/test_mat.py ss [ 75%] cobra/test/test_io/test_pickle.py .s.s [ 80%] cobra/test/test_io/test_sbml.py sss [ 84%] cobra/test/test_io/test_sbml3.py .......... [ 97%] cobra/test/test_io/test_yaml.py .x [100%] Computing stats ... Computing stats ... group 1/1 Computing stats ... group 1/1: min Computing stats ... group 1/1: min (1/4) Computing stats ... group 1/1: min (2/4) Computing stats ... group 1/1: min (3/4) Computing stats ... group 1/1: min (4/4) Computing stats ... group 1/1: min (1/4) Computing stats ... group 1/1: min (2/4) Computing stats ... group 1/1: min (3/4) Computing stats ... group 1/1: min (4/4) Computing stats ... group 1/1: max Computing stats ... group 1/1: max (1/4) Computing stats ... group 1/1: max (2/4) Computing stats ... group 1/1: max (3/4) Computing stats ... group 1/1: max (4/4) Computing stats ... group 1/1: max (1/4) Computing stats ... group 1/1: max (2/4) Computing stats ... group 1/1: max (3/4) Computing stats ... group 1/1: max (4/4) Computing stats ... group 1/1: mean Computing stats ... group 1/1: mean (1/4) Computing stats ... group 1/1: mean (2/4) Computing stats ... group 1/1: mean (3/4) Computing stats ... group 1/1: mean (4/4) Computing stats ... group 1/1: mean (1/4) Computing stats ... group 1/1: mean (2/4) Computing stats ... group 1/1: mean (3/4) Computing stats ... group 1/1: mean (4/4) Computing stats ... group 1/1: median Computing stats ... group 1/1: median (1/4) Computing stats ... group 1/1: median (2/4) Computing stats ... group 1/1: median (3/4) Computing stats ... group 1/1: median (4/4) Computing stats ... group 1/1: median (1/4) Computing stats ... group 1/1: median (2/4) Computing stats ... group 1/1: median (3/4) Computing stats ... group 1/1: median (4/4) Computing stats ... group 1/1: iqr Computing stats ... group 1/1: iqr (1/4) Computing stats ... group 1/1: iqr (2/4) Computing stats ... group 1/1: iqr (3/4) Computing stats ... group 1/1: iqr (4/4) Computing stats ... group 1/1: iqr (1/4) Computing stats ... group 1/1: iqr (2/4) Computing stats ... group 1/1: iqr (3/4) Computing stats ... group 1/1: iqr (4/4) Computing stats ... group 1/1: stddev Computing stats ... group 1/1: stddev (1/4) Computing stats ... group 1/1: stddev (2/4) Computing stats ... group 1/1: stddev (3/4) Computing stats ... group 1/1: stddev (4/4) Computing stats ... group 1/1: stddev (1/4) Computing stats ... group 1/1: stddev (2/4) Computing stats ... group 1/1: stddev (3/4) Computing stats ... group 1/1: stddev (4/4) Computing stats ... group 1/1: ops Computing stats ... group 1/1: ops (1/4) Computing stats ... group 1/1: ops (2/4) Computing stats ... group 1/1: ops (3/4) Computing stats ... group 1/1: ops (4/4) Computing stats ... group 1/1: ops (1/4) Computing stats ... group 1/1: ops (2/4) Computing stats ... group 1/1: ops (3/4) Computing stats ... group 1/1: ops (4/4) Computing stats ... group 1/1: ops: outliers Computing stats ... group 1/1: ops: outliers (1/4) Computing stats ... group 1/1: ops: outliers (2/4) Computing stats ... group 1/1: ops: outliers (3/4) Computing stats ... group 1/1: ops: outliers (4/4) Computing stats ... group 1/1: ops: rounds Computing stats ... group 1/1: ops: rounds (1/4) Computing stats ... group 1/1: ops: rounds (2/4) Computing stats ... group 1/1: ops: rounds (3/4) Computing stats ... group 1/1: ops: rounds (4/4) Computing stats ... group 1/1: ops: iterations Computing stats ... group 1/1: ops: iterations (1/4) Computing stats ... group 1/1: ops: iterations (2/4) Computing stats ... group 1/1: ops: iterations (3/4) Computing stats ... group 1/1: ops: iterations (4/4) ------------------------------------------------------------------------------------------ benchmark: 4 tests ------------------------------------------------------------------------------------------ Name (time in ms) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- test_benchmark_medium_mip 13.0901 (1.0) 15.1506 (1.04) 13.5290 (1.0) 0.3460 (1.56) 13.4394 (1.0) 0.4551 (1.33) 17;1 73.9151 (1.0) 67 1 test_benchmark_medium_linear 13.5024 (1.03) 14.4983 (1.0) 13.8285 (1.02) 0.2224 (1.0) 13.8089 (1.03) 0.3431 (1.0) 22;0 72.3145 (0.98) 69 1 test_benchmark_read 34.1652 (2.61) 141.4266 (9.75) 40.9102 (3.02) 22.4941 (101.16) 35.9752 (2.68) 2.8412 (8.28) 1;1 24.4438 (0.33) 22 1 test_benchmark_write 171.7421 (13.12) 504.4441 (34.79) 263.0456 (19.44) 136.6105 (614.37) 217.9248 (16.22) 106.7629 (311.18) 1;1 3.8016 (0.05) 5 1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean =============================== warnings summary =============================== /usr/lib/python3/dist-packages/pandas/core/dtypes/inference.py:6 /usr/lib/python3/dist-packages/pandas/core/dtypes/inference.py:6 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working /usr/lib/python3/dist-packages/pandas/core/tools/datetimes.py:3 /usr/lib/python3/dist-packages/pandas/core/tools/datetimes.py:3 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 DeprecationWarning: invalid escape sequence \[ /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 DeprecationWarning: invalid escape sequence \] /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 DeprecationWarning: invalid escape sequence \[ /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 DeprecationWarning: invalid escape sequence \] /usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 /usr/share/python-wheels/html5lib-1.0.1-py2.py3-none-any.whl/html5lib/_trie/_base.py:3 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working cobra/core/gene.py:249 cobra/core/gene.py:249 DeprecationWarning: invalid escape sequence \( cobra/core/gene.py:263 cobra/core/gene.py:263 DeprecationWarning: invalid escape sequence \( cobra/core/reaction.py:38 cobra/core/reaction.py:38 DeprecationWarning: invalid escape sequence \s cobra/flux_analysis/gapfilling.py:83 cobra/flux_analysis/gapfilling.py:83 DeprecationWarning: invalid escape sequence \s /usr/lib/python3/dist-packages/ruamel/yaml/comments.py:14 /usr/lib/python3/dist-packages/ruamel/yaml/comments.py:14 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working /usr/lib/python3/dist-packages/ruamel/yaml/comments.py:14 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working /usr/lib/python3/dist-packages/ruamel/yaml/comments.py:14 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working .pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::()::test_gene_knockout_computation cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::()::test_sbo_annotation cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::()::test_prune_unused_rxns_output_type cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py::TestManipulation::()::test_prune_unused_rxns_functionality cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestModelMedium::()::test_model_medium cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead cobra/core/model.py:245 DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead cobra/core/model.py:245 DeprecationWarning: The 'warn' method is deprecated, use 'warning' instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestTypeDetection::()::test_demand cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py::TestTypeDetection::()::test_sink cobra/core/model.py:443 DeprecationWarning: add_reaction deprecated. Use add_reactions instead .pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_yaml.py::test_load_yaml_model /usr/lib/python3/dist-packages/ruamel/yaml/constructor.py:1242 DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working -- Docs: https://docs.pytest.org/en/latest/warnings.html ======== 66 passed, 7 skipped, 3 xfailed, 26 warnings in 33.54 seconds ========= create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-cobra-0.14.1/debian/python3-cobra running install running build running build_py running install_lib creating /build/python-cobra-0.14.1/debian/python3-cobra creating /build/python-cobra-0.14.1/debian/python3-cobra/usr creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7 creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/.benchmarks creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/exceptions.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml.bz2 -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.pickle -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.mat -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/iJO1366.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid2.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_pfba_fva.json -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid0.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/invalid1.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/iJO1366.pickle -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.genes -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.pickle -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc2.xml.gz -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_solution.pickle -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook.xml.gz -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.json -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/raven.pickle -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/update_pickles.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/textbook_fva.json -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/salmonella.media -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini.yml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/raven.mat -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_cobra.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/data/mini_fbc1.xml -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/conftest.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_medium.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/test_manipulation.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_medium.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/conftest.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_mat.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_io_order.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/conftest.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_mat.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_pickle.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_io_order.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_json.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_sbml3.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_yaml.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__pycache__/test_sbml.cpython-37-PYTEST.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_pickle.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_sbml.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_json.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_sbml3.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io/test_yaml.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_manipulation.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/test/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/room.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/sampling.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/reaction.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/summary.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/sampling.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/moma.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/deletion.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/loopless.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/geometric.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis/variability.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium/minimal_medium.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium/boundary_types.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/medium/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/__pycache__/exceptions.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__pycache__ creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/annotate.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/delete.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/validate.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__pycache__/modify.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/delete.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/modify.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation/validate.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/formula.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/reaction.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/solution.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/object.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/model.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/solution.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/formula.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/reaction.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/gene.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/metabolite.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/configuration.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/singleton.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/object.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/dictlist.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__pycache__/species.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/model.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/dictlist.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/metabolite.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/gene.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/species.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/singleton.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/configuration.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/core/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/array.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/solver.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/context.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/context.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/solver.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/util.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/__pycache__/array.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/util.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/util/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/yaml.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/mat.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io creating /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/sbml.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/sbml3.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/mat.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/yaml.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/json.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/dict.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__pycache__/__init__.cpython-37.pyc -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__pycache__ copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/dict.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/json.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/sbml3.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/sbml.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io copying /build/python-cobra-0.14.1/.pybuild/cpython3_3.7_cobra/build/cobra/io/__init__.py -> /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/exceptions.py to exceptions.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/conftest.py to conftest.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/data/update_pickles.py to update_pickles.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_medium.py to test_medium.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/conftest.py to conftest.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_mat.py to test_mat.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_io_order.py to test_io_order.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_pickle.py to test_pickle.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_sbml.py to test_sbml.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_json.py to test_json.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_sbml3.py to test_sbml3.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_io/test_yaml.py to test_yaml.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/test_manipulation.py to test_manipulation.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/room.py to room.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/sampling.py to sampling.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/summary.py to summary.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/medium/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/delete.py to delete.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/modify.py to modify.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/manipulation/validate.py to validate.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/formula.py to formula.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/reaction.py to reaction.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/solution.py to solution.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/object.py to object.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/model.py to model.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/dictlist.py to dictlist.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/metabolite.py to metabolite.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/gene.py to gene.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/species.py to species.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/singleton.py to singleton.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/configuration.py to configuration.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/core/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/array.py to array.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/solver.py to solver.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/context.py to context.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/util.py to util.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/util/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/yaml.py to yaml.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/mat.py to mat.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/dict.py to dict.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/json.py to json.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/sbml3.py to sbml3.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/sbml.py to sbml.cpython-37.pyc byte-compiling /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra/io/__init__.py to __init__.cpython-37.pyc running install_egg_info running egg_info creating cobra.egg-info writing cobra.egg-info/PKG-INFO writing dependency_links to cobra.egg-info/dependency_links.txt writing requirements to cobra.egg-info/requires.txt writing top-level names to cobra.egg-info/top_level.txt writing manifest file 'cobra.egg-info/SOURCES.txt' reading manifest file 'cobra.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'cobra' writing manifest file 'cobra.egg-info/SOURCES.txt' Copying cobra.egg-info to /build/python-cobra-0.14.1/debian/python3-cobra/usr/lib/python3.7/dist-packages/cobra-0.14.1.egg-info Skipping SOURCES.txt running install_scripts debian/rules override_dh_install make[1]: Verzeichnis „/build/python-cobra-0.14.1“ wird betreten dh_install -X update_pickles.py --package=python-cobra-data dh_install --remaining-packages make[1]: Verzeichnis „/build/python-cobra-0.14.1“ wird verlassen dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: Paket »python-cobra-data« wird in »../python-cobra-data_0.14.1-1_all.deb« gebaut. dpkg-deb: Paket »python3-cobra« wird in »../python3-cobra_0.14.1-1_i386.deb« gebaut. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-cobra_0.14.1-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: user script /srv/workspace/pbuilder/25957/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/25957/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25957 and its subdirectories I: Current time: Sun May 10 22:58:13 +14 2020 I: pbuilder-time-stamp: 1589101093