I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 27 20:16:17 -12 2024 I: pbuilder-time-stamp: 1732781777 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Nov 27 09:41:53 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: no acceptable signature found dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4044160/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='efe3b23b5bb84e3aa5686fecaebaf742' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4044160' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.75zt9AO7/pbuilderrc_TiwY --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.75zt9AO7/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://46.16.76.132:3128' I: uname -a Linux ionos1-amd64 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4044160/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 56 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 144 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After unpacking 157 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.1-1 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 27 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.1-1 [11.9 MB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 55 http://deb.debian.org/debian experimental/main amd64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Fetched 41.3 MB in 3s (12.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19969 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_amd64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_amd64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_amd64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.1-1_all.deb ... Unpacking cmake-data (3.31.1-1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../18-libicu72_72.1-5+b1_amd64.deb ... Unpacking libicu72:amd64 (72.1-5+b1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.1-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. 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Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.36-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules build dh build --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (5.9s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=20 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 20 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 Start 13: test_search_blastn_sa_m9 Start 14: test_search_blastn_sa_sam Start 15: test_search_blastn_sa_bam Start 16: test_search_blastn_sa_m9.gz Start 17: test_search_blastn_sa_sam.bz2 Start 18: test_search_blastn_fm_m0 Start 19: test_search_blastn_fm_m8 Start 20: test_search_blastn_fm_m9 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.86 sec Start 21: test_search_blastn_fm_sam 2/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.89 sec Start 22: test_search_blastn_fm_bam 3/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.97 sec Start 23: test_search_blastn_fm_m9.gz 4/80 Test #6: test_mkindex_blastx_fm ........... Passed 1.01 sec Start 24: test_search_blastn_fm_sam.bz2 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 2.22 sec Start 25: test_search_blastp_sa_m0 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 2.61 sec Start 26: test_search_blastp_sa_m8 7/80 Test #9: test_mkindex_tblastx_sa .......... Passed 3.51 sec Start 27: test_search_blastp_sa_m9 8/80 Test #7: test_mkindex_tblastn_sa .......... Passed 3.62 sec Start 28: test_search_blastp_sa_sam 9/80 Test #10: test_mkindex_tblastx_fm .......... Passed 3.84 sec Start 29: test_search_blastp_sa_bam 10/80 Test #8: test_mkindex_tblastn_fm .......... Passed 3.90 sec Start 30: test_search_blastp_sa_m9.gz 11/80 Test #26: test_search_blastp_sa_m8 ......... Passed 2.08 sec Start 31: test_search_blastp_sa_sam.bz2 12/80 Test #25: test_search_blastp_sa_m0 ......... Passed 3.11 sec Start 32: test_search_blastp_fm_m0 13/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.79 sec Start 33: test_search_blastp_fm_m8 14/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.76 sec Start 34: test_search_blastp_fm_m9 15/80 Test #28: test_search_blastp_sa_sam ........ Passed 2.14 sec Start 35: test_search_blastp_fm_sam 16/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.93 sec Start 36: test_search_blastp_fm_bam 17/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.97 sec Start 37: test_search_blastp_fm_m9.gz 18/80 Test #33: test_search_blastp_fm_m8 ......... Passed 1.52 sec Start 38: test_search_blastp_fm_sam.bz2 19/80 Test #35: test_search_blastp_fm_sam ........ Passed 1.49 sec Start 39: test_search_blastx_sa_m0 20/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.63 sec Start 40: test_search_blastx_sa_m8 21/80 Test #36: test_search_blastp_fm_bam ........ Passed 1.54 sec Start 41: test_search_blastx_sa_m9 22/80 Test #32: test_search_blastp_fm_m0 ......... Passed 2.22 sec Start 42: test_search_blastx_sa_sam 23/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.51 sec Start 43: test_search_blastx_sa_bam 24/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.65 sec Start 44: test_search_blastx_sa_m9.gz 25/80 Test #19: test_search_blastn_fm_m8 ......... Passed 8.80 sec Start 45: test_search_blastx_sa_sam.bz2 26/80 Test #15: test_search_blastn_sa_bam ........ Passed 9.24 sec Start 46: test_search_blastx_fm_m0 27/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 9.78 sec Start 47: test_search_blastx_fm_m8 28/80 Test #11: test_search_blastn_sa_m0 ......... Passed 10.85 sec Start 48: test_search_blastx_fm_m9 29/80 Test #13: test_search_blastn_sa_m9 ......... Passed 10.88 sec Start 49: test_search_blastx_fm_sam 30/80 Test #12: test_search_blastn_sa_m8 ......... Passed 10.93 sec Start 50: test_search_blastx_fm_bam 31/80 Test #21: test_search_blastn_fm_sam ........ Passed 10.96 sec Start 51: test_search_blastx_fm_m9.gz 32/80 Test #20: test_search_blastn_fm_m9 ......... Passed 11.85 sec Start 52: test_search_blastx_fm_sam.bz2 33/80 Test #18: test_search_blastn_fm_m0 ......... Passed 11.99 sec Start 53: test_search_tblastn_sa_m0 34/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 12.22 sec Start 54: test_search_tblastn_sa_m8 35/80 Test #40: test_search_blastx_sa_m8 ......... Passed 5.69 sec Start 55: test_search_tblastn_sa_m9 36/80 Test #22: test_search_blastn_fm_bam ........ Passed 12.35 sec Start 56: test_search_tblastn_sa_sam 37/80 Test #14: test_search_blastn_sa_sam ........ Passed 13.51 sec Start 57: test_search_tblastn_sa_bam 38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 13.83 sec Start 58: test_search_tblastn_sa_m9.gz 39/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 14.70 sec Start 59: test_search_tblastn_sa_sam.bz2 40/80 Test #46: test_search_blastx_fm_m0 ......... Passed 5.91 sec Start 60: test_search_tblastn_fm_m0 41/80 Test #47: test_search_blastx_fm_m8 ......... Passed 5.15 sec Start 61: test_search_tblastn_fm_m8 42/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 8.49 sec Start 62: test_search_tblastn_fm_m9 43/80 Test #49: test_search_blastx_fm_sam ........ Passed 6.09 sec Start 63: test_search_tblastn_fm_sam 44/80 Test #48: test_search_blastx_fm_m9 ......... Passed 6.20 sec Start 64: test_search_tblastn_fm_bam 45/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 5.39 sec Start 65: test_search_tblastn_fm_m9.gz 46/80 Test #42: test_search_blastx_sa_sam ........ Passed 10.10 sec Start 66: test_search_tblastn_fm_sam.bz2 47/80 Test #50: test_search_blastx_fm_bam ........ Passed 6.63 sec Start 67: test_search_tblastx_sa_m0 48/80 Test #41: test_search_blastx_sa_m9 ......... Passed 10.54 sec Start 68: test_search_tblastx_sa_m8 49/80 Test #43: test_search_blastx_sa_bam ........ Passed 10.32 sec Start 69: test_search_tblastx_sa_m9 50/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 6.88 sec Start 70: test_search_tblastx_sa_sam 51/80 Test #56: test_search_tblastn_sa_sam ....... Passed 7.07 sec Start 71: test_search_tblastx_sa_bam 52/80 Test #39: test_search_blastx_sa_m0 ......... Passed 13.31 sec 53/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 7.60 sec Start 72: test_search_tblastx_sa_m9.gz Start 73: test_search_tblastx_sa_sam.bz2 54/80 Test #64: test_search_tblastn_fm_bam ....... Passed 3.77 sec Start 74: test_search_tblastx_fm_m0 55/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 5.59 sec Start 75: test_search_tblastx_fm_m8 56/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 9.68 sec Start 76: test_search_tblastx_fm_m9 57/80 Test #57: test_search_tblastn_sa_bam ....... Passed 8.38 sec Start 77: test_search_tblastx_fm_sam 58/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 5.44 sec Start 78: test_search_tblastx_fm_bam 59/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 7.39 sec Start 79: test_search_tblastx_fm_m9.gz 60/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 13.95 sec Start 80: test_search_tblastx_fm_sam.bz2 61/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 8.21 sec 62/80 Test #63: test_search_tblastn_fm_sam ....... Passed 6.77 sec 63/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 11.86 sec 64/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 9.85 sec 65/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 7.20 sec 66/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 7.94 sec 67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 11.48 sec 68/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 12.66 sec 69/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 13.89 sec 70/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 14.50 sec 71/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 15.41 sec 72/80 Test #77: test_search_tblastx_fm_sam ....... Passed 15.60 sec 73/80 Test #71: test_search_tblastx_sa_bam ....... Passed 18.01 sec 74/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 16.54 sec 75/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 21.61 sec 76/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 19.65 sec 77/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 22.66 sec 78/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 23.37 sec 79/80 Test #70: test_search_tblastx_sa_sam ....... Passed 22.38 sec 80/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 24.59 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 45.26 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --builddirectory=build dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j20 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Built target lambda make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_amd64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4044160 and its subdirectories I: Current time: Wed Nov 27 20:29:32 -12 2024 I: pbuilder-time-stamp: 1732782572