I: pbuilder: network access will be disabled during build I: Current time: Fri Apr 18 22:14:13 -12 2025 I: pbuilder-time-stamp: 1745057653 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-dynasor_2.1-1.dsc] I: copying [./python-dynasor_2.1.orig.tar.bz2] I: copying [./python-dynasor_2.1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-dynasor_2.1-1.dsc: unsupported subcommand dpkg-source: info: extracting python-dynasor in python-dynasor-2.1 dpkg-source: info: unpacking python-dynasor_2.1.orig.tar.bz2 dpkg-source: info: unpacking python-dynasor_2.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/780352/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='1e44d1e27fbd41ef87f6b99a95fd4833' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='780352' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kCLVnvW8/pbuilderrc_Ug3y --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kCLVnvW8/b1 --logfile b1/build.log python-dynasor_2.1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' I: uname -a Linux infom01-amd64 6.1.0-33-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/780352/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, pybuild-plugin-pyproject, python3-all, python3-ase, python3-mdanalysis, python3-numba, python3-numpy, python3-pandas, python3-pytest, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-ase; however: Package python3-ase is not installed. pbuilder-satisfydepends-dummy depends on python3-mdanalysis; however: Package python3-mdanalysis is not installed. pbuilder-satisfydepends-dummy depends on python3-numba; however: Package python3-numba is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-lato{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate0{a} libedit2{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhwloc15{a} libidn2-0{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libopenjp2-7{a} libp11-kit0{a} libpfm4{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libsymspg2{a} libtasn1-6{a} libtbb12{a} libtbbbind-2-5{a} libtbbmalloc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} libz3-4{a} libzopfli1{a} llvm-19{a} llvm-19-linker-tools{a} llvm-19-runtime{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} pybuild-plugin-pyproject{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-ase{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-build{a} python3-cairo{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-citeproc{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-duecredit{a} python3-filelock{a} python3-fonttools{a} python3-freetype{a} python3-fs{a} python3-griddataformats{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-joblib{a} python3-kiwisolver{a} python3-llvmlite{a} python3-looseversion{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-mda-xdrlib{a} python3-mdanalysis{a} python3-minimal{a} python3-mmtf{a} python3-more-itertools{a} python3-mpmath{a} python3-mrcfile{a} python3-msgpack{a} python3-numba{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyparsing{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytz{a} python3-reportlab{a} python3-requests{a} python3-rlpycairo{a} python3-scipy{a} python3-setuptools{a} python3-spglib{a} python3-sympy{a} python3-threadpoolctl{a} python3-tk{a} python3-toml{a} python3-tqdm{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufolib2{a} python3-urllib3{a} python3-wheel{a} python3-zipp{a} python3-zopfli{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-rtd-theme-common{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: binfmt-support curl fonts-dejavu-extra isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libhwloc-plugins libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults llvm-19-dev lynx ncbi-blast+ numba-doc psmisc publicsuffix python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pip python3-pooch python3-psutil python3-pygments python3-sklearn python3-tables python3-tz python3-yaml shared-mime-info systemd wget xdg-user-dirs 0 packages upgraded, 226 newly installed, 0 to remove and 0 not upgraded. Need to get 202 MB of archives. After unpacking 814 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main amd64 fonts-lato all 2.015-1 [2780 kB] Get: 2 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.3-2 [861 kB] Get: 3 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 4 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.3-2 [2212 kB] Get: 5 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.3-1 [27.2 kB] Get: 6 http://deb.debian.org/debian unstable/main amd64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian unstable/main amd64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025b-2 [260 kB] Get: 9 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 10 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get: 11 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get: 12 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [1953 kB] Get: 13 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.3-2 [751 kB] Get: 14 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.3-1 [10.2 kB] Get: 15 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.3-1 [28.2 kB] Get: 16 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB] Get: 17 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.1-2 [160 kB] Get: 18 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB] Get: 19 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB] Get: 20 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB] Get: 21 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get: 22 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB] Get: 23 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB] Get: 24 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.5.0-1 [1491 kB] Get: 26 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 28 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 29 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 30 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 31 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 32 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 33 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB] Get: 34 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 35 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 36 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 37 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 38 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 39 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get: 40 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 41 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB] Get: 42 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 43 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB] Get: 44 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get: 45 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 46 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 47 http://deb.debian.org/debian unstable/main amd64 libfontenc1 amd64 1:1.1.8-1+b2 [23.3 kB] Get: 48 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB] Get: 49 http://deb.debian.org/debian unstable/main amd64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 50 http://deb.debian.org/debian unstable/main amd64 xfonts-utils amd64 1:7.7+7 [93.3 kB] Get: 51 http://deb.debian.org/debian unstable/main amd64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 52 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB] Get: 53 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get: 54 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get: 55 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get: 56 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get: 57 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get: 58 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get: 59 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get: 60 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB] Get: 61 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get: 62 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB] Get: 63 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB] Get: 64 http://deb.debian.org/debian unstable/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB] Get: 65 http://deb.debian.org/debian unstable/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B] Get: 66 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 67 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB] Get: 68 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 69 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 70 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 71 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 72 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 73 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 74 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 75 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 76 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 77 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 78 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 79 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.2 [919 kB] Get: 80 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250414 [116 kB] Get: 81 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 82 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-4 [163 kB] Get: 83 http://deb.debian.org/debian unstable/main amd64 fonts-lyx all 2.4.3-1 [190 kB] Get: 84 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get: 85 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get: 86 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get: 87 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get: 88 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 89 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 90 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 91 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 92 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 93 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 94 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 95 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 96 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 97 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 98 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get: 99 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 100 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 101 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 102 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 103 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 104 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 105 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 106 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.13.0-2 [381 kB] Get: 107 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get: 108 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 109 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB] Get: 110 http://deb.debian.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get: 111 http://deb.debian.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get: 112 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB] Get: 113 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB] Get: 114 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB] Get: 115 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.12.0-1 [164 kB] Get: 116 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB] Get: 117 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB] Get: 118 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB] Get: 119 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-4 [172 kB] Get: 120 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 121 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 122 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 123 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 124 http://deb.debian.org/debian unstable/main amd64 liblcms2-2 amd64 2.16-2 [160 kB] Get: 125 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB] Get: 126 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 127 http://deb.debian.org/debian unstable/main amd64 libllvm19 amd64 1:19.1.7-3 [26.0 MB] Get: 128 http://deb.debian.org/debian unstable/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB] Get: 129 http://deb.debian.org/debian unstable/main amd64 libpfm4 amd64 4.13.0+git99-gc5587f9-1 [371 kB] Get: 130 http://deb.debian.org/debian unstable/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB] Get: 131 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB] Get: 132 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB] Get: 133 http://deb.debian.org/debian unstable/main amd64 libsymspg2 amd64 2.6.0-3 [194 kB] Get: 134 http://deb.debian.org/debian unstable/main amd64 libtbbbind-2-5 amd64 2022.1.0-1 [14.0 kB] Get: 135 http://deb.debian.org/debian unstable/main amd64 libtbbmalloc2 amd64 2022.1.0-1 [50.2 kB] Get: 136 http://deb.debian.org/debian unstable/main amd64 libtbb12 amd64 2022.1.0-1 [91.7 kB] Get: 137 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB] Get: 138 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.7.0-3 [346 kB] Get: 139 http://deb.debian.org/debian unstable/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB] Get: 140 http://deb.debian.org/debian unstable/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB] Get: 141 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get: 142 http://deb.debian.org/debian unstable/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB] Get: 143 http://deb.debian.org/debian unstable/main amd64 llvm-19-runtime amd64 1:19.1.7-3 [551 kB] Get: 144 http://deb.debian.org/debian unstable/main amd64 llvm-19-linker-tools amd64 1:19.1.7-3 [1260 kB] Get: 145 http://deb.debian.org/debian unstable/main amd64 llvm-19 amd64 1:19.1.7-3 [16.4 MB] Get: 146 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-3 [55.7 kB] Get: 147 http://deb.debian.org/debian unstable/main amd64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 148 http://deb.debian.org/debian unstable/main amd64 python3-toml all 0.10.2-1 [16.2 kB] Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-build all 1.2.2-1 [36.0 kB] Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 152 http://deb.debian.org/debian unstable/main amd64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 153 http://deb.debian.org/debian unstable/main amd64 python-matplotlib-data all 3.10.1+dfsg1-2 [2736 kB] Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.3-1 [1048 B] Get: 155 http://deb.debian.org/debian unstable/main amd64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 156 http://deb.debian.org/debian unstable/main amd64 python3-scipy amd64 1.15.2-8 [16.3 MB] Get: 157 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 158 http://deb.debian.org/debian unstable/main amd64 python3-spglib amd64 2.6.0-3 [53.6 kB] Get: 159 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 160 http://deb.debian.org/debian unstable/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB] Get: 161 http://deb.debian.org/debian unstable/main amd64 python3.13-tk amd64 3.13.3-2 [107 kB] Get: 162 http://deb.debian.org/debian unstable/main amd64 python3-tk amd64 3.13.3-1 [9548 B] Get: 163 http://deb.debian.org/debian unstable/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB] Get: 164 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 165 http://deb.debian.org/debian unstable/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB] Get: 166 http://deb.debian.org/debian unstable/main amd64 python3-cycler all 0.12.1-1 [9496 B] Get: 167 http://deb.debian.org/debian unstable/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB] Get: 168 http://deb.debian.org/debian unstable/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB] Get: 169 http://deb.debian.org/debian unstable/main amd64 python3-fs all 2.4.16-7 [95.2 kB] Get: 170 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.2-1 [1297 kB] Get: 171 http://deb.debian.org/debian unstable/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB] Get: 172 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB] Get: 173 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-5 [4148 kB] Get: 174 http://deb.debian.org/debian unstable/main amd64 python3-attr all 25.3.0-1 [69.5 kB] Get: 175 http://deb.debian.org/debian unstable/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 176 http://deb.debian.org/debian unstable/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB] Get: 177 http://deb.debian.org/debian unstable/main amd64 unicode-data all 15.1.0-1 [8547 kB] Get: 178 http://deb.debian.org/debian unstable/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB] Get: 179 http://deb.debian.org/debian unstable/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB] Get: 180 http://deb.debian.org/debian unstable/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-2 [23.8 MB] Get: 181 http://deb.debian.org/debian unstable/main amd64 python3-ase all 3.24.0-1 [1730 kB] Get: 182 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 183 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 184 http://deb.debian.org/debian unstable/main amd64 python3-cairo amd64 1.27.0-2 [114 kB] Get: 185 http://deb.debian.org/debian unstable/main amd64 python3-freetype all 2.5.1-1 [89.3 kB] Get: 186 http://deb.debian.org/debian unstable/main amd64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 187 http://deb.debian.org/debian unstable/main amd64 python3-reportlab all 4.3.1-1 [1158 kB] Get: 188 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get: 189 http://deb.debian.org/debian unstable/main amd64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 190 http://deb.debian.org/debian unstable/main amd64 python3-biopython amd64 1.85+dfsg-4 [1672 kB] Get: 191 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 192 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.1-1+b1 [125 kB] Get: 193 http://deb.debian.org/debian unstable/main amd64 python3-citeproc all 0.8.2-1 [99.0 kB] Get: 194 http://deb.debian.org/debian unstable/main amd64 python3-looseversion all 1.3.0-3 [8964 B] Get: 195 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.10-1 [42.0 kB] Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.3.0-2 [114 kB] Get: 197 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 198 http://deb.debian.org/debian unstable/main amd64 python3-duecredit all 0.10.2-2 [70.6 kB] Get: 199 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.18.0-1 [12.8 kB] Get: 200 http://deb.debian.org/debian unstable/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1023 kB] Get: 201 http://deb.debian.org/debian unstable/main amd64 python3-mrcfile all 1.5.4-2 [118 kB] Get: 202 http://deb.debian.org/debian unstable/main amd64 python3-griddataformats all 1.0.2-2 [2048 kB] Get: 203 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 78.1.0-1.2 [224 kB] Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 78.1.0-1.2 [738 kB] Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-joblib all 1.4.2-3 [216 kB] Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-llvmlite amd64 0.44.0-1 [231 kB] Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-mda-xdrlib all 0.2.0-3 [11.6 kB] Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.0.3-3+b4 [84.5 kB] Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-mmtf all 1.1.3-1 [17.0 kB] Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-threadpoolctl all 3.1.0-1 [21.2 kB] Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-tqdm all 4.67.1-4 [90.8 kB] Get: 220 http://deb.debian.org/debian unstable/main amd64 python3-mdanalysis amd64 2.9.0-5 [4203 kB] Get: 221 http://deb.debian.org/debian unstable/main amd64 python3-numba amd64 0.61.2+dfsg-1 [1773 kB] Get: 222 http://deb.debian.org/debian unstable/main amd64 python3-pytz all 2025.2-1 [151 kB] Get: 223 http://deb.debian.org/debian unstable/main amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4595 kB] Get: 224 http://deb.debian.org/debian unstable/main amd64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 225 http://deb.debian.org/debian unstable/main amd64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 226 http://deb.debian.org/debian unstable/main amd64 python3-pytest all 8.3.5-2 [250 kB] Fetched 202 MB in 4s (45.7 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19840 files and directories currently installed.) Preparing to unpack .../fonts-lato_2.015-1_all.deb ... Unpacking fonts-lato (2.015-1) ... Selecting previously unselected package libpython3.13-minimal:amd64. Preparing to unpack .../libpython3.13-minimal_3.13.3-2_amd64.deb ... Unpacking libpython3.13-minimal:amd64 (3.13.3-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_amd64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:amd64 (3.13.3-2) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:amd64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_amd64.deb ... Unpacking libpython3.13-stdlib:amd64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_amd64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:amd64. 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I: Building the package I: Running cd /build/reproducible-path/python-dynasor-2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-dynasor_2.1-1_source.changes dpkg-buildpackage: info: source package python-dynasor dpkg-buildpackage: info: source version 2.1-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Roland Mas dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-dynasor-2.1/.pybuild/cpython3_3.13 * Building wheel... /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib/dynasor copying dynasor/sample.py -> build/lib/dynasor copying dynasor/units.py -> build/lib/dynasor copying dynasor/__init__.py -> build/lib/dynasor copying dynasor/logging_tools.py -> build/lib/dynasor copying dynasor/correlation_functions.py -> build/lib/dynasor creating build/lib/dynasor/tools copying dynasor/tools/structures.py -> build/lib/dynasor/tools copying dynasor/tools/acfs.py -> build/lib/dynasor/tools copying dynasor/tools/__init__.py -> build/lib/dynasor/tools copying dynasor/tools/damped_harmonic_oscillator.py -> build/lib/dynasor/tools creating build/lib/dynasor/trajectory copying dynasor/trajectory/mdanalysis_trajectory_reader.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/abstract_trajectory_reader.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/atomic_indices.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/trajectory.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/ase_trajectory_reader.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/__init__.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/trajectory_frame.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/lammps_trajectory_reader.py -> build/lib/dynasor/trajectory copying dynasor/trajectory/extxyz_trajectory_reader.py -> build/lib/dynasor/trajectory creating build/lib/dynasor/core copying dynasor/core/time_averager.py -> build/lib/dynasor/core copying dynasor/core/reciprocal.py -> build/lib/dynasor/core copying dynasor/core/__init__.py -> build/lib/dynasor/core copying dynasor/core/rho_j_q_numba.py -> build/lib/dynasor/core creating build/lib/dynasor/qpoints copying dynasor/qpoints/spherical_qpoints.py -> build/lib/dynasor/qpoints copying dynasor/qpoints/__init__.py -> build/lib/dynasor/qpoints copying dynasor/qpoints/tools.py -> build/lib/dynasor/qpoints copying dynasor/qpoints/lattice.py -> build/lib/dynasor/qpoints creating build/lib/dynasor/cli copying dynasor/cli/main.py -> build/lib/dynasor/cli copying dynasor/cli/__init__.py -> build/lib/dynasor/cli creating build/lib/dynasor/post_processing copying dynasor/post_processing/spherical_average.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/filon.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/average_runs.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/neutron_scattering_lengths.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/atomic_weighting.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/x_ray_form_factors.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/weights.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/__init__.py -> build/lib/dynasor/post_processing copying dynasor/post_processing/neutron_scattering_lengths.json -> build/lib/dynasor/post_processing creating build/lib/dynasor/post_processing/form-factors copying dynasor/post_processing/form-factors/electron-parameters-kmax2-peng-1996.json -> build/lib/dynasor/post_processing/form-factors copying dynasor/post_processing/form-factors/compton-parameters-waasmaier-kirfel-1995.json -> build/lib/dynasor/post_processing/form-factors copying dynasor/post_processing/form-factors/waasmaier.txt -> build/lib/dynasor/post_processing/form-factors copying dynasor/post_processing/form-factors/electron-parameters-kmax6-peng-1996.json -> build/lib/dynasor/post_processing/form-factors copying dynasor/post_processing/form-factors/x-ray-parameters-waasmaier-kirfel-1995.json -> build/lib/dynasor/post_processing/form-factors copying dynasor/post_processing/form-factors/x-ray-parameters-itcc-2004.json -> build/lib/dynasor/post_processing/form-factors running build_scripts creating build/scripts-3.13 copying and adjusting bin/dynasor -> build/scripts-3.13 changing mode of build/scripts-3.13/dynasor from 644 to 755 installing to build/bdist.linux-x86_64/wheel running install running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/dynasor creating build/bdist.linux-x86_64/wheel/dynasor/tools copying build/lib/dynasor/tools/structures.py -> build/bdist.linux-x86_64/wheel/./dynasor/tools copying build/lib/dynasor/tools/acfs.py -> build/bdist.linux-x86_64/wheel/./dynasor/tools copying build/lib/dynasor/tools/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor/tools copying build/lib/dynasor/tools/damped_harmonic_oscillator.py -> build/bdist.linux-x86_64/wheel/./dynasor/tools copying build/lib/dynasor/sample.py -> build/bdist.linux-x86_64/wheel/./dynasor creating build/bdist.linux-x86_64/wheel/dynasor/trajectory copying build/lib/dynasor/trajectory/mdanalysis_trajectory_reader.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/abstract_trajectory_reader.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/atomic_indices.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/trajectory.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/ase_trajectory_reader.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/trajectory_frame.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/lammps_trajectory_reader.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory copying build/lib/dynasor/trajectory/extxyz_trajectory_reader.py -> build/bdist.linux-x86_64/wheel/./dynasor/trajectory creating build/bdist.linux-x86_64/wheel/dynasor/core copying build/lib/dynasor/core/time_averager.py -> build/bdist.linux-x86_64/wheel/./dynasor/core copying build/lib/dynasor/core/reciprocal.py -> build/bdist.linux-x86_64/wheel/./dynasor/core copying build/lib/dynasor/core/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor/core copying build/lib/dynasor/core/rho_j_q_numba.py -> build/bdist.linux-x86_64/wheel/./dynasor/core creating build/bdist.linux-x86_64/wheel/dynasor/qpoints copying build/lib/dynasor/qpoints/spherical_qpoints.py -> build/bdist.linux-x86_64/wheel/./dynasor/qpoints copying build/lib/dynasor/qpoints/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor/qpoints copying build/lib/dynasor/qpoints/tools.py -> build/bdist.linux-x86_64/wheel/./dynasor/qpoints copying build/lib/dynasor/qpoints/lattice.py -> build/bdist.linux-x86_64/wheel/./dynasor/qpoints copying build/lib/dynasor/units.py -> build/bdist.linux-x86_64/wheel/./dynasor creating build/bdist.linux-x86_64/wheel/dynasor/cli copying build/lib/dynasor/cli/main.py -> build/bdist.linux-x86_64/wheel/./dynasor/cli copying build/lib/dynasor/cli/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor/cli copying build/lib/dynasor/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor creating build/bdist.linux-x86_64/wheel/dynasor/post_processing copying build/lib/dynasor/post_processing/neutron_scattering_lengths.json -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/spherical_average.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/filon.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/average_runs.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/neutron_scattering_lengths.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/atomic_weighting.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/x_ray_form_factors.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing creating build/bdist.linux-x86_64/wheel/dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/form-factors/electron-parameters-kmax2-peng-1996.json -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/form-factors/compton-parameters-waasmaier-kirfel-1995.json -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/form-factors/waasmaier.txt -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/form-factors/electron-parameters-kmax6-peng-1996.json -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/form-factors/x-ray-parameters-waasmaier-kirfel-1995.json -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/form-factors/x-ray-parameters-itcc-2004.json -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing/form-factors copying build/lib/dynasor/post_processing/weights.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/post_processing/__init__.py -> build/bdist.linux-x86_64/wheel/./dynasor/post_processing copying build/lib/dynasor/logging_tools.py -> build/bdist.linux-x86_64/wheel/./dynasor copying build/lib/dynasor/correlation_functions.py -> build/bdist.linux-x86_64/wheel/./dynasor running install_egg_info running egg_info creating dynasor.egg-info writing dynasor.egg-info/PKG-INFO writing dependency_links to dynasor.egg-info/dependency_links.txt writing requirements to dynasor.egg-info/requires.txt writing top-level names to dynasor.egg-info/top_level.txt writing manifest file 'dynasor.egg-info/SOURCES.txt' reading manifest file 'dynasor.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'dynasor.egg-info/SOURCES.txt' Copying dynasor.egg-info to build/bdist.linux-x86_64/wheel/./dynasor-2.1.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/dynasor-2.1.data/scripts copying build/scripts-3.13/dynasor -> build/bdist.linux-x86_64/wheel/dynasor-2.1.data/scripts changing mode of build/bdist.linux-x86_64/wheel/dynasor-2.1.data/scripts/dynasor to 755 creating build/bdist.linux-x86_64/wheel/dynasor-2.1.dist-info/WHEEL creating '/build/reproducible-path/python-dynasor-2.1/.pybuild/cpython3_3.13/.tmp-whovmbcj/dynasor-2.1-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'dynasor/__init__.py' adding 'dynasor/correlation_functions.py' adding 'dynasor/logging_tools.py' adding 'dynasor/sample.py' adding 'dynasor/units.py' adding 'dynasor/cli/__init__.py' adding 'dynasor/cli/main.py' adding 'dynasor/core/__init__.py' adding 'dynasor/core/reciprocal.py' adding 'dynasor/core/rho_j_q_numba.py' adding 'dynasor/core/time_averager.py' adding 'dynasor/post_processing/__init__.py' adding 'dynasor/post_processing/atomic_weighting.py' adding 'dynasor/post_processing/average_runs.py' adding 'dynasor/post_processing/filon.py' adding 'dynasor/post_processing/neutron_scattering_lengths.json' adding 'dynasor/post_processing/neutron_scattering_lengths.py' adding 'dynasor/post_processing/spherical_average.py' adding 'dynasor/post_processing/weights.py' adding 'dynasor/post_processing/x_ray_form_factors.py' adding 'dynasor/post_processing/form-factors/compton-parameters-waasmaier-kirfel-1995.json' adding 'dynasor/post_processing/form-factors/electron-parameters-kmax2-peng-1996.json' adding 'dynasor/post_processing/form-factors/electron-parameters-kmax6-peng-1996.json' adding 'dynasor/post_processing/form-factors/waasmaier.txt' adding 'dynasor/post_processing/form-factors/x-ray-parameters-itcc-2004.json' adding 'dynasor/post_processing/form-factors/x-ray-parameters-waasmaier-kirfel-1995.json' adding 'dynasor/qpoints/__init__.py' adding 'dynasor/qpoints/lattice.py' adding 'dynasor/qpoints/spherical_qpoints.py' adding 'dynasor/qpoints/tools.py' adding 'dynasor/tools/__init__.py' adding 'dynasor/tools/acfs.py' adding 'dynasor/tools/damped_harmonic_oscillator.py' adding 'dynasor/tools/structures.py' adding 'dynasor/trajectory/__init__.py' adding 'dynasor/trajectory/abstract_trajectory_reader.py' adding 'dynasor/trajectory/ase_trajectory_reader.py' adding 'dynasor/trajectory/atomic_indices.py' adding 'dynasor/trajectory/extxyz_trajectory_reader.py' adding 'dynasor/trajectory/lammps_trajectory_reader.py' adding 'dynasor/trajectory/mdanalysis_trajectory_reader.py' adding 'dynasor/trajectory/trajectory.py' adding 'dynasor/trajectory/trajectory_frame.py' adding 'dynasor-2.1.data/scripts/dynasor' adding 'dynasor-2.1.dist-info/licenses/LICENSE' adding 'dynasor-2.1.dist-info/METADATA' adding 'dynasor-2.1.dist-info/WHEEL' adding 'dynasor-2.1.dist-info/top_level.txt' adding 'dynasor-2.1.dist-info/RECORD' removing build/bdist.linux-x86_64/wheel Successfully built dynasor-2.1-py3-none-any.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-dynasor-2.1/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not test_integration_static_structure_factor' ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/python-dynasor-2.1 plugins: typeguard-4.4.2 collected 134 items / 1 deselected / 133 selected tests/filon/test_filon.py ... [ 2%] tests/test_SED.py ... [ 4%] tests/test_average_independent_samples.py .. [ 6%] tests/test_cli.py . [ 6%] tests/test_dho.py .... [ 9%] tests/test_dynasor_API.py ...... [ 14%] tests/test_integration.py . [ 15%] tests/test_lattice.py .. [ 16%] tests/test_logging.py . [ 17%] tests/test_normalization.py .. [ 18%] tests/test_numba.py . [ 19%] tests/test_parse_gromacs_index_file.py ... [ 21%] tests/test_qpoints.py ...... [ 26%] tests/test_regression_vs_old_cmdline_results.py . [ 27%] tests/test_sample_class.py ........... [ 35%] tests/test_spherical_average.py ..... [ 39%] tests/test_time_averager.py . [ 39%] tests/test_tools.py ..... [ 43%] tests/test_trajectory_and_window_iterator.py ............ [ 52%] tests/test_trajectory_frame.py ... [ 54%] tests/test_units.py . [ 55%] tests/test_utils.py . [ 56%] tests/test_weighting.py .............................. [ 78%] tests/test_weights.py .. [ 80%] tests/trajectory_reader/test_ase_trajectory_reader.py ....... [ 85%] tests/trajectory_reader/test_extxyz_trajectory_reader.py ....... [ 90%] tests/trajectory_reader/test_lammps_trajectory_reader.py ...... [ 95%] tests/trajectory_reader/test_mdanalysis_trajectory_reader.py ...... [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13/build/tests/test_dynasor_API.py: 60 warnings .pybuild/cpython3_3.13/build/tests/test_trajectory_and_window_iterator.py: 72 warnings .pybuild/cpython3_3.13/build/tests/test_trajectory_frame.py: 12 warnings /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=788583) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() .pybuild/cpython3_3.13/build/tests/test_trajectory_and_window_iterator.py::test_trajectory_with_mdanalysis_reader_xtc .pybuild/cpython3_3.13/build/tests/test_trajectory_frame.py::test_read_indices_from_trajectory .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_units_only_from_traj .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_units_from_user_matching_traj .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_units_from_user_not_matching_traj .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_stopiteration_of_closed_file /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:1672: UserWarning: there is no reference attributes in this universe to guess types from warnings.warn(str(e)) .pybuild/cpython3_3.13/build/tests/test_trajectory_and_window_iterator.py::test_trajectory_with_mdanalysis_reader_xtc .pybuild/cpython3_3.13/build/tests/test_trajectory_frame.py::test_read_indices_from_trajectory .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_units_only_from_traj .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_units_from_user_matching_traj .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_units_from_user_not_matching_traj .pybuild/cpython3_3.13/build/tests/trajectory_reader/test_mdanalysis_trajectory_reader.py::test_stopiteration_of_closed_file /usr/lib/python3/dist-packages/MDAnalysis/core/universe.py:1672: UserWarning: there is no reference attributes (elements, types, or names) in this universe to guess mass from warnings.warn(str(e)) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ========== 133 passed, 1 deselected, 156 warnings in 92.60s (0:01:32) ========== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-dynasor/ -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-dynasor/usr/bin/dynasor dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-dynasor' in '../python3-dynasor_2.1-1_all.deb'. dpkg-genbuildinfo --build=binary -O../python-dynasor_2.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../python-dynasor_2.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/780352 and its subdirectories I: Current time: Fri Apr 18 22:18:06 -12 2025 I: pbuilder-time-stamp: 1745057886