I: pbuilder: network access will be disabled during build
I: Current time: Mon Dec 29 18:41:03 -12 2025
I: pbuilder-time-stamp: 1767076863
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [r-bioc-rcwl_1.22.0+ds-1.dsc]
I: copying [./r-bioc-rcwl_1.22.0+ds.orig.tar.xz]
I: copying [./r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Tue Nov 26 17:18:32 2024 
gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
gpgv:                issuer "crusoe@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-rcwl_1.22.0+ds-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-rcwl in r-bioc-rcwl-1.22.0+ds
dpkg-source: info: unpacking r-bioc-rcwl_1.22.0+ds.orig.tar.xz
dpkg-source: info: unpacking r-bioc-rcwl_1.22.0+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_packaged_software
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2380514/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
  DISTRIBUTION='experimental'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='e262badd53d744a58e5a30555b4de05f'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2380514'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tkYU6NPa/pbuilderrc_eSRm --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tkYU6NPa/b1 --logfile b1/build.log r-bioc-rcwl_1.22.0+ds-1.dsc'
  SUDO_GID='110'
  SUDO_UID='105'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
  http_proxy='http://213.165.73.152:3128'
I: uname -a
  Linux ionos5-amd64 6.11.5+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.5-1~bpo12+1 (2024-11-11) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Aug  4  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2380514/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-yaml, r-bioc-s4vectors, r-bioc-biocparallel, r-cran-batchtools, r-cran-diagrammer, r-cran-shiny, r-cran-r.utils, r-cran-codetools, cwltool
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19973 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-r; however:
  Package dh-r is not installed.
 pbuilder-satisfydepends-dummy depends on r-base-dev; however:
  Package r-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-yaml; however:
  Package r-cran-yaml is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however:
  Package r-bioc-s4vectors is not installed.
 pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however:
  Package r-bioc-biocparallel is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-batchtools; however:
  Package r-cran-batchtools is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-diagrammer; however:
  Package r-cran-diagrammer is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-shiny; however:
  Package r-cran-shiny is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-r.utils; however:
  Package r-cran-r.utils is not installed.
 pbuilder-satisfydepends-dummy depends on r-cran-codetools; however:
  Package r-cran-codetools is not installed.
 pbuilder-satisfydepends-dummy depends on cwltool; however:
  Package cwltool is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cwl-upgrader{a} cwltool{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} graphviz{a} groff-base{a} icu-devtools{a} intltool-debian{a} javascript-common{a} libabsl20230802{a} libalgorithm-c3-perl{a} libamd3{a} libann0{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcolamd3{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdav1d7{a} libde265-0{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgd3{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libglpk40{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5t64{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libheif-plugin-dav1d{a} libheif-plugin-libde265{a} libheif1{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libimagequant0{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblab-gamut1{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libltdl7{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libnuma1{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpathplan4{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libraqm0{a} librav1e0.7{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsuitesparseconfig7{a} libsvtav1enc2{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmu6{a} libxmuu1{a} libxpm4{a} libxrender1{a} libxslt1.1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libyuv0{a} littler{a} m4{a} man-db{a} media-types{a} netbase{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-arcp{a} python3-argcomplete{a} python3-autocommand{a} python3-cachecontrol{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-coloredlogs{a} python3-cwl-utils{a} python3-dateutil{a} python3-filelock{a} python3-humanfriendly{a} python3-idna{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-lxml{a} python3-minimal{a} python3-mistune{a} python3-more-itertools{a} python3-msgpack{a} python3-mypy-extensions{a} python3-networkx{a} python3-packaging{a} python3-pkg-resources{a} python3-prov{a} python3-psutil{a} python3-pydot{a} python3-pyparsing{a} python3-rdflib{a} python3-requests{a} python3-ruamel.yaml{a} python3-ruamel.yaml.clib{a} python3-schema-salad{a} python3-setuptools{a} python3-spython{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-s4vectors{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-base64url{a} r-cran-batchtools{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-brew{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-checkmate{a} r-cran-cli{a} r-cran-clipr{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-data.table{a} r-cran-diagrammer{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-generics{a} r-cran-glue{a} r-cran-highr{a} r-cran-hms{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-httpuv{a} r-cran-igraph{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-matrix{a} r-cran-memoise{a} r-cran-mime{a} r-cran-munsell{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-prettyunits{a} r-cran-progress{a} r-cran-promises{a} r-cran-purrr{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-readr{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rstudioapi{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-tinytex{a} r-cran-tzdb{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-visnetwork{a} r-cran-vroom{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  black bzip2-doc cme curl devscripts fonts-liberation git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx node-highlight.js node-jquery nodejs publicsuffix python3-bs4 python3-cssselect python3-gdal python3-html5lib python3-html5rdf python3-matplotlib python3-numpy python3-orjson python3-pygraphviz python3-scipy python3-yaml r-bioc-graph r-cran-ape r-cran-bench r-cran-brio r-cran-broom r-cran-cairo r-cran-callr r-cran-covr r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-decor r-cran-desc r-cran-devtools r-cran-dichromat r-cran-downlit r-cran-dt r-cran-dygraphs r-cran-fastmatch r-cran-formattable r-cran-future r-cran-ggplot2 r-cran-gridsvg r-cran-httr r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-lintr r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-markdown r-cran-mass r-cran-microbenchmark r-cran-mockery r-cran-mockr r-cran-mvtnorm r-cran-nleqslv r-cran-openssl r-cran-pkgdown r-cran-pkgload r-cran-png r-cran-processx r-cran-ps r-cran-r.rsp r-cran-ragg r-cran-ranger r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rmysql r-cran-rpostgresql r-cran-rprojroot r-cran-rsconnect r-cran-rsqlite r-cran-rsvg r-cran-runit r-cran-sf r-cran-shinyjs r-cran-spelling r-cran-survival r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-tikzdevice r-cran-tinytest r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-webshot r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 
0 packages upgraded, 398 newly installed, 0 to remove and 0 not upgraded.
Need to get 255 MB of archives. After unpacking 1064 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.7-3 [815 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.7-3 [2162 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2024b-3 [255 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.1-1+b1 [23.2 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 12 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB]
Get: 14 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-5 [169 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.7-3 [1966 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.7-3 [671 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B]
Get: 22 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.3.2-2 [1382 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20240203 [158 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.22.5-2 [200 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-5 [1181 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.2-11 [91.5 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 ucf all 3.0043+nmu1 [55.2 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.22.5-2 [723 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 47 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.2.0-1 [213 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml.clib amd64 0.2.8+ds-2+b1 [179 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 python3-ruamel.yaml all 0.18.6+ds-3 [145 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.8.30+dfsg-1 [9576 B]
Get: 52 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.0.7-2 [111 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-1 [107 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 python3-msgpack amd64 1.0.3-3+b3 [112 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 python3-cachecontrol all 0.14.1-1 [18.6 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 python3-mistune all 3.0.2-2 [33.2 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 python3-mypy-extensions all 1.0.0-1 [6064 B]
Get: 61 http://deb.debian.org/debian unstable/main amd64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 python3-rdflib all 7.1.1-2 [472 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 python3-filelock all 3.16.1-1 [12.6 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 python3-schema-salad amd64 8.7.20240905150001-1+b1 [1227 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 cwl-upgrader all 1.2.11-1 [15.7 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 python3-argcomplete all 3.5.1-1 [40.1 kB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 python3-humanfriendly all 10.0-6 [85.6 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 python3-coloredlogs all 15.0.1-1 [47.4 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 python3-cwl-utils all 0.35-1 [118 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 python3-networkx all 3.2.1-5 [13.0 MB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 python3-prov all 2.0.1-1 [95.1 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 python3-psutil amd64 5.9.8-2 [225 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 libcdt5 amd64 2.42.4-2+b1 [40.5 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 libcgraph6 amd64 2.42.4-2+b1 [64.2 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 libaom3 amd64 3.11.0-1 [1879 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 libdav1d7 amd64 1.5.0-1+b1 [550 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 libgav1-1 amd64 0.19.0-2+b2 [350 kB]
Get: 88 http://deb.debian.org/debian unstable/main amd64 librav1e0.7 amd64 0.7.1-7+b2 [936 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 libsvtav1enc2 amd64 2.2.1+dfsg-2 [2173 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 libyuv0 amd64 0.0.1897.20241115-1 [172 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 libavif16 amd64 1.1.1-1 [117 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.44-2 [280 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-1.1+b1 [391 kB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 libsharpyuv0 amd64 1.4.0-0.1+b1 [113 kB]
Get: 101 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-dav1d amd64 1.19.3-1 [11.2 kB]
Get: 102 http://deb.debian.org/debian unstable/main amd64 libde265-0 amd64 1.0.15-1+b2 [189 kB]
Get: 103 http://deb.debian.org/debian unstable/main amd64 libheif-plugin-libde265 amd64 1.19.3-1 [15.0 kB]
Get: 104 http://deb.debian.org/debian unstable/main amd64 libheif1 amd64 1.19.3-1 [489 kB]
Get: 105 http://deb.debian.org/debian unstable/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB]
Get: 106 http://deb.debian.org/debian unstable/main amd64 libfribidi0 amd64 1.0.15-1 [71.8 kB]
Get: 107 http://deb.debian.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.2-3 [1501 kB]
Get: 108 http://deb.debian.org/debian unstable/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 109 http://deb.debian.org/debian unstable/main amd64 libharfbuzz0b amd64 10.0.1-1 [477 kB]
Get: 110 http://deb.debian.org/debian unstable/main amd64 libraqm0 amd64 0.10.1-1+b2 [14.1 kB]
Get: 111 http://deb.debian.org/debian unstable/main amd64 libdeflate0 amd64 1.22-1 [47.3 kB]
Get: 112 http://deb.debian.org/debian unstable/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 113 http://deb.debian.org/debian unstable/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 114 http://deb.debian.org/debian unstable/main amd64 libwebp7 amd64 1.4.0-0.1+b1 [313 kB]
Get: 115 http://deb.debian.org/debian unstable/main amd64 libtiff6 amd64 4.5.1+git230720-5 [324 kB]
Get: 116 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 117 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 118 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 119 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 120 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 121 http://deb.debian.org/debian unstable/main amd64 libxpm4 amd64 1:3.5.17-1+b2 [56.3 kB]
Get: 122 http://deb.debian.org/debian unstable/main amd64 libgd3 amd64 2.3.3-12+b1 [126 kB]
Get: 123 http://deb.debian.org/debian unstable/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2+b1 [160 kB]
Get: 124 http://deb.debian.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB]
Get: 125 http://deb.debian.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 126 http://deb.debian.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 127 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b2 [50.5 kB]
Get: 128 http://deb.debian.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1.1+b2 [27.8 kB]
Get: 129 http://deb.debian.org/debian unstable/main amd64 libcairo2 amd64 1.18.2-2 [535 kB]
Get: 130 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.4.7-8 [393 kB]
Get: 131 http://deb.debian.org/debian unstable/main amd64 fontconfig amd64 2.15.0-1.1+b1 [463 kB]
Get: 132 http://deb.debian.org/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get: 133 http://deb.debian.org/debian unstable/main amd64 libdatrie1 amd64 0.2.13-3+b1 [38.1 kB]
Get: 134 http://deb.debian.org/debian unstable/main amd64 libthai0 amd64 0.1.29-2+b1 [49.4 kB]
Get: 135 http://deb.debian.org/debian unstable/main amd64 libpango-1.0-0 amd64 1.54.0+ds-3 [223 kB]
Get: 136 http://deb.debian.org/debian unstable/main amd64 libpangoft2-1.0-0 amd64 1.54.0+ds-3 [54.2 kB]
Get: 137 http://deb.debian.org/debian unstable/main amd64 libpangocairo-1.0-0 amd64 1.54.0+ds-3 [35.2 kB]
Get: 138 http://deb.debian.org/debian unstable/main amd64 libpathplan4 amd64 2.42.4-2+b1 [42.8 kB]
Get: 139 http://deb.debian.org/debian unstable/main amd64 libgvc6 amd64 2.42.4-2+b1 [685 kB]
Get: 140 http://deb.debian.org/debian unstable/main amd64 libgvpr2 amd64 2.42.4-2+b1 [193 kB]
Get: 141 http://deb.debian.org/debian unstable/main amd64 liblab-gamut1 amd64 2.42.4-2+b1 [198 kB]
Get: 142 http://deb.debian.org/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB]
Get: 143 http://deb.debian.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 144 http://deb.debian.org/debian unstable/main amd64 libsm6 amd64 2:1.2.4-1 [35.2 kB]
Get: 145 http://deb.debian.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2+b1 [188 kB]
Get: 146 http://deb.debian.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b3 [58.8 kB]
Get: 147 http://deb.debian.org/debian unstable/main amd64 libxaw7 amd64 2:1.0.16-1 [212 kB]
Get: 148 http://deb.debian.org/debian unstable/main amd64 graphviz amd64 2.42.4-2+b1 [616 kB]
Get: 149 http://deb.debian.org/debian unstable/main amd64 python3-pydot all 2.0.0-3 [32.6 kB]
Get: 150 http://deb.debian.org/debian unstable/main amd64 python3-spython all 0.3.13-2 [55.2 kB]
Get: 151 http://deb.debian.org/debian unstable/main amd64 python3-arcp all 0.2.1-6 [13.5 kB]
Get: 152 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 153 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 154 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.2.0-1 [731 kB]
Get: 155 http://deb.debian.org/debian unstable/main amd64 cwltool all 3.1.20241024121129-1 [511 kB]
Get: 156 http://deb.debian.org/debian unstable/main amd64 dctrl-tools amd64 2.24-3+b1 [104 kB]
Get: 157 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.20 [89.7 kB]
Get: 158 http://deb.debian.org/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB]
Get: 159 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 160 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 161 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 162 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 163 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 164 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 165 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.22.5-2 [1601 kB]
Get: 166 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 167 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 168 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.20 [915 kB]
Get: 169 http://deb.debian.org/debian unstable/main amd64 zip amd64 3.0-14 [233 kB]
Get: 170 http://deb.debian.org/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB]
Get: 171 http://deb.debian.org/debian unstable/main amd64 libpaper1 amd64 1.1.29+b2 [12.8 kB]
Get: 172 http://deb.debian.org/debian unstable/main amd64 libpaper-utils amd64 1.1.29+b2 [9236 B]
Get: 173 http://deb.debian.org/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 174 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB]
Get: 175 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB]
Get: 176 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB]
Get: 177 http://deb.debian.org/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB]
Get: 178 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 179 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 180 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 181 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 182 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.0-1 [351 kB]
Get: 183 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-8 [836 kB]
Get: 184 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB]
Get: 185 http://deb.debian.org/debian unstable/main amd64 libtcl8.6 amd64 8.6.15+dfsg-2 [1042 kB]
Get: 186 http://deb.debian.org/debian unstable/main amd64 libxft2 amd64 2.3.6-1+b2 [54.5 kB]
Get: 187 http://deb.debian.org/debian unstable/main amd64 libxss1 amd64 1:1.2.3-1+b2 [17.0 kB]
Get: 188 http://deb.debian.org/debian unstable/main amd64 libtk8.6 amd64 8.6.15-1 [791 kB]
Get: 189 http://deb.debian.org/debian unstable/main amd64 r-base-core amd64 4.4.2-1 [28.3 MB]
Get: 190 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-8 [878 kB]
Get: 191 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-8 [11.7 MB]
Get: 192 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-8 [12.2 kB]
Get: 193 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B]
Get: 194 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B]
Get: 195 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB]
Get: 196 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB]
Get: 197 http://deb.debian.org/debian unstable/main amd64 libncurses6 amd64 6.5-2+b1 [105 kB]
Get: 198 http://deb.debian.org/debian unstable/main amd64 libncurses-dev amd64 6.5-2+b1 [351 kB]
Get: 199 http://deb.debian.org/debian unstable/main amd64 libreadline-dev amd64 8.2-5 [153 kB]
Get: 200 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB]
Get: 201 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB]
Get: 202 http://deb.debian.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.44-4 [261 kB]
Get: 203 http://deb.debian.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.44-4 [248 kB]
Get: 204 http://deb.debian.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.44-4 [60.3 kB]
Get: 205 http://deb.debian.org/debian unstable/main amd64 libpcre2-dev amd64 10.44-4 [790 kB]
Get: 206 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 207 http://deb.debian.org/debian unstable/main amd64 libpng-dev amd64 1.6.44-2 [366 kB]
Get: 208 http://deb.debian.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB]
Get: 209 http://deb.debian.org/debian unstable/main amd64 liblzma-dev amd64 5.6.3-1+b1 [316 kB]
Get: 210 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB]
Get: 211 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-5+b1 [10.4 MB]
Get: 212 http://deb.debian.org/debian unstable/main amd64 libxmuu1 amd64 2:1.1.3-3+b3 [21.9 kB]
Get: 213 http://deb.debian.org/debian unstable/main amd64 xauth amd64 1:1.1.2-1 [36.0 kB]
Get: 214 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get: 215 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get: 216 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get: 217 http://deb.debian.org/debian unstable/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3+b1 [190 kB]
Get: 218 http://deb.debian.org/debian unstable/main amd64 libdeflate-dev amd64 1.22-1 [55.8 kB]
Get: 219 http://deb.debian.org/debian unstable/main amd64 r-base-dev all 4.4.2-1 [4516 B]
Get: 220 http://deb.debian.org/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB]
Get: 221 http://deb.debian.org/debian unstable/main amd64 libswitch-perl all 2.17-3 [20.3 kB]
Get: 222 http://deb.debian.org/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get: 223 http://deb.debian.org/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get: 224 http://deb.debian.org/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get: 225 http://deb.debian.org/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get: 226 http://deb.debian.org/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get: 227 http://deb.debian.org/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get: 228 http://deb.debian.org/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get: 229 http://deb.debian.org/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get: 230 http://deb.debian.org/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get: 231 http://deb.debian.org/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get: 232 http://deb.debian.org/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get: 233 http://deb.debian.org/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get: 234 http://deb.debian.org/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-1 [12.1 kB]
Get: 235 http://deb.debian.org/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-1+b1 [16.2 kB]
Get: 236 http://deb.debian.org/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get: 237 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get: 238 http://deb.debian.org/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get: 239 http://deb.debian.org/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get: 240 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get: 241 http://deb.debian.org/debian unstable/main amd64 libclass-load-perl all 0.25-2 [15.3 kB]
Get: 242 http://deb.debian.org/debian unstable/main amd64 libclass-load-xs-perl amd64 0.10-2+b4 [14.2 kB]
Get: 243 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get: 244 http://deb.debian.org/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get: 245 http://deb.debian.org/debian unstable/main amd64 libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get: 246 http://deb.debian.org/debian unstable/main amd64 libclass-c3-perl all 0.35-2 [21.0 kB]
Get: 247 http://deb.debian.org/debian unstable/main amd64 libmro-compat-perl all 0.15-2 [11.8 kB]
Get: 248 http://deb.debian.org/debian unstable/main amd64 libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get: 249 http://deb.debian.org/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get: 250 http://deb.debian.org/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get: 251 http://deb.debian.org/debian unstable/main amd64 libeval-closure-perl all 0.14-3 [11.2 kB]
Get: 252 http://deb.debian.org/debian unstable/main amd64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get: 253 http://deb.debian.org/debian unstable/main amd64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get: 254 http://deb.debian.org/debian unstable/main amd64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get: 255 http://deb.debian.org/debian unstable/main amd64 libpackage-stash-xs-perl amd64 0.30-1+b4 [20.9 kB]
Get: 256 http://deb.debian.org/debian unstable/main amd64 libmoose-perl amd64 2.2207-1+b2 [766 kB]
Get: 257 http://deb.debian.org/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get: 258 http://deb.debian.org/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB]
Get: 259 http://deb.debian.org/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get: 260 http://deb.debian.org/debian unstable/main amd64 libsub-name-perl amd64 0.27-1+b3 [12.5 kB]
Get: 261 http://deb.debian.org/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get: 262 http://deb.debian.org/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-1 [64.9 kB]
Get: 263 http://deb.debian.org/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB]
Get: 264 http://deb.debian.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB]
Get: 265 http://deb.debian.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.0-1 [359 kB]
Get: 266 http://deb.debian.org/debian unstable/main amd64 libwww-curl-perl amd64 4.17-11 [57.9 kB]
Get: 267 http://deb.debian.org/debian unstable/main amd64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get: 268 http://deb.debian.org/debian unstable/main amd64 dh-r all 20231212 [42.2 kB]
Get: 269 http://deb.debian.org/debian unstable/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get: 270 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get: 271 http://deb.debian.org/debian unstable/main amd64 javascript-common all 11+nmu1 [6260 B]
Get: 272 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB]
Get: 273 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB]
Get: 274 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-3.2+b1 [10.6 MB]
Get: 275 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get: 276 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB]
Get: 277 http://deb.debian.org/debian unstable/main amd64 libglpk40 amd64 5.0-1+b2 [401 kB]
Get: 278 http://deb.debian.org/debian unstable/main amd64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB]
Get: 279 http://deb.debian.org/debian unstable/main amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB]
Get: 280 http://deb.debian.org/debian unstable/main amd64 libjs-d3 all 3.5.17-4 [132 kB]
Get: 281 http://deb.debian.org/debian unstable/main amd64 libjs-es5-shim all 4.6.7-2 [47.4 kB]
Get: 282 http://deb.debian.org/debian unstable/main amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB]
Get: 283 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 284 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB]
Get: 285 http://deb.debian.org/debian unstable/main amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB]
Get: 286 http://deb.debian.org/debian unstable/main amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B]
Get: 287 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB]
Get: 288 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 289 http://deb.debian.org/debian unstable/main amd64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB]
Get: 290 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get: 291 http://deb.debian.org/debian unstable/main amd64 libjs-modernizr all 3.13.0-0.1 [191 kB]
Get: 292 http://deb.debian.org/debian unstable/main amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB]
Get: 293 http://deb.debian.org/debian unstable/main amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB]
Get: 294 http://deb.debian.org/debian unstable/main amd64 liblua5.4-0 amd64 5.4.6-3+b2 [147 kB]
Get: 295 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB]
Get: 296 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB]
Get: 297 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-1+b2 [52.7 kB]
Get: 298 http://deb.debian.org/debian unstable/main amd64 r-cran-littler amd64 0.3.20-1 [102 kB]
Get: 299 http://deb.debian.org/debian unstable/main amd64 littler all 0.3.20-1 [16.0 kB]
Get: 300 http://deb.debian.org/debian unstable/main amd64 node-bootstrap-sass all 3.4.3-2 [186 kB]
Get: 301 http://deb.debian.org/debian unstable/main amd64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get: 302 http://deb.debian.org/debian unstable/main amd64 node-normalize.css all 8.0.1-5 [12.7 kB]
Get: 303 http://deb.debian.org/debian unstable/main amd64 pandoc-data all 3.1.11.1-3 [459 kB]
Get: 304 http://deb.debian.org/debian unstable/main amd64 pandoc amd64 3.1.11.1+ds-2 [26.4 MB]
Get: 305 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocgenerics all 0.50.0-2 [607 kB]
Get: 306 http://deb.debian.org/debian unstable/main amd64 r-cran-formatr all 1.14-2 [152 kB]
Get: 307 http://deb.debian.org/debian unstable/main amd64 r-cran-lambda.r all 1.2.4-2 [118 kB]
Get: 308 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get: 309 http://deb.debian.org/debian unstable/main amd64 r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get: 310 http://deb.debian.org/debian unstable/main amd64 r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get: 311 http://deb.debian.org/debian unstable/main amd64 r-cran-codetools all 0.2-20-1 [91.1 kB]
Get: 312 http://deb.debian.org/debian unstable/main amd64 r-cran-bh all 1.84.0-1 [5912 B]
Get: 313 http://deb.debian.org/debian unstable/main amd64 r-cran-cpp11 all 0.5.0-1 [213 kB]
Get: 314 http://deb.debian.org/debian unstable/main amd64 r-bioc-biocparallel amd64 1.38.0-2 [1325 kB]
Get: 315 http://deb.debian.org/debian unstable/main amd64 r-bioc-s4vectors amd64 0.42.1+dfsg-2 [1894 kB]
Get: 316 http://deb.debian.org/debian unstable/main amd64 r-cran-backports amd64 1.5.0-2 [121 kB]
Get: 317 http://deb.debian.org/debian unstable/main amd64 r-cran-base64enc amd64 0.1-3-3 [27.9 kB]
Get: 318 http://deb.debian.org/debian unstable/main amd64 r-cran-base64url amd64 1.4-2+b1 [26.4 kB]
Get: 319 http://deb.debian.org/debian unstable/main amd64 r-cran-brew all 1.0-10-1 [70.1 kB]
Get: 320 http://deb.debian.org/debian unstable/main amd64 r-cran-checkmate amd64 2.3.2-1 [705 kB]
Get: 321 http://deb.debian.org/debian unstable/main amd64 r-cran-data.table amd64 1.16.2+dfsg-1 [1978 kB]
Get: 322 http://deb.debian.org/debian unstable/main amd64 r-cran-digest amd64 0.6.37-1 [206 kB]
Get: 323 http://deb.debian.org/debian unstable/main amd64 r-cran-fs amd64 1.6.4+dfsg-1 [247 kB]
Get: 324 http://deb.debian.org/debian unstable/main amd64 r-cran-crayon all 1.5.2-1 [165 kB]
Get: 325 http://deb.debian.org/debian unstable/main amd64 r-cran-cli amd64 3.6.3-1 [1342 kB]
Get: 326 http://deb.debian.org/debian unstable/main amd64 r-cran-glue amd64 1.7.0-1 [157 kB]
Get: 327 http://deb.debian.org/debian unstable/main amd64 r-cran-rlang amd64 1.1.4-1 [1712 kB]
Get: 328 http://deb.debian.org/debian unstable/main amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get: 329 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 330 http://deb.debian.org/debian unstable/main amd64 r-cran-vctrs amd64 0.6.5-1 [1375 kB]
Get: 331 http://deb.debian.org/debian unstable/main amd64 r-cran-hms all 1.1.3-1 [104 kB]
Get: 332 http://deb.debian.org/debian unstable/main amd64 r-cran-prettyunits all 1.2.0-1 [162 kB]
Get: 333 http://deb.debian.org/debian unstable/main amd64 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 334 http://deb.debian.org/debian unstable/main amd64 r-cran-progress all 1.2.3-1 [93.0 kB]
Get: 335 http://deb.debian.org/debian unstable/main amd64 r-cran-rappdirs amd64 0.3.3-1 [47.4 kB]
Get: 336 http://deb.debian.org/debian unstable/main amd64 r-cran-stringi amd64 1.8.4-1 [895 kB]
Get: 337 http://deb.debian.org/debian unstable/main amd64 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get: 338 http://deb.debian.org/debian unstable/main amd64 r-cran-batchtools amd64 0.9.17+dfsg-1 [712 kB]
Get: 339 http://deb.debian.org/debian unstable/main amd64 r-cran-bit amd64 4.0.5-1 [1070 kB]
Get: 340 http://deb.debian.org/debian unstable/main amd64 r-cran-bit64 amd64 4.0.5-1 [463 kB]
Get: 341 http://deb.debian.org/debian unstable/main amd64 r-cran-fastmap amd64 1.2.0-1 [72.2 kB]
Get: 342 http://deb.debian.org/debian unstable/main amd64 r-cran-cachem amd64 1.1.0-1 [73.9 kB]
Get: 343 http://deb.debian.org/debian unstable/main amd64 r-cran-htmltools amd64 0.5.8.1-1 [378 kB]
Get: 344 http://deb.debian.org/debian unstable/main amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB]
Get: 345 http://deb.debian.org/debian unstable/main amd64 r-cran-jsonlite amd64 1.8.9+dfsg-1 [445 kB]
Get: 346 http://deb.debian.org/debian unstable/main amd64 r-cran-memoise all 2.0.1-1 [53.8 kB]
Get: 347 http://deb.debian.org/debian unstable/main amd64 r-cran-mime amd64 0.12-2 [35.6 kB]
Get: 348 http://deb.debian.org/debian unstable/main amd64 r-cran-sass amd64 0.4.9+dfsg-1 [965 kB]
Get: 349 http://deb.debian.org/debian unstable/main amd64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB]
Get: 350 http://deb.debian.org/debian unstable/main amd64 r-cran-clipr all 0.8.0-1 [53.0 kB]
Get: 351 http://deb.debian.org/debian unstable/main amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1716 kB]
Get: 352 http://deb.debian.org/debian unstable/main amd64 r-cran-commonmark amd64 1.9.2-1 [122 kB]
Get: 353 http://deb.debian.org/debian unstable/main amd64 r-cran-generics all 0.1.3-1 [81.4 kB]
Get: 354 http://deb.debian.org/debian unstable/main amd64 r-cran-magrittr amd64 2.0.3-1 [201 kB]
Get: 355 http://deb.debian.org/debian unstable/main amd64 r-cran-fansi amd64 1.0.5-1 [621 kB]
Get: 356 http://deb.debian.org/debian unstable/main amd64 r-cran-utf8 amd64 1.2.4-1 [133 kB]
Get: 357 http://deb.debian.org/debian unstable/main amd64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get: 358 http://deb.debian.org/debian unstable/main amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [420 kB]
Get: 359 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [223 kB]
Get: 360 http://deb.debian.org/debian unstable/main amd64 r-cran-dplyr amd64 1.1.4-2 [1542 kB]
Get: 361 http://deb.debian.org/debian unstable/main amd64 r-cran-evaluate all 1.0.0-1 [112 kB]
Get: 362 http://deb.debian.org/debian unstable/main amd64 r-cran-xfun amd64 0.49+dfsg-1 [546 kB]
Get: 363 http://deb.debian.org/debian unstable/main amd64 r-cran-highr all 0.11+dfsg-1 [38.3 kB]
Get: 364 http://deb.debian.org/debian unstable/main amd64 r-cran-yaml amd64 2.3.10-1 [108 kB]
Get: 365 http://deb.debian.org/debian unstable/main amd64 r-cran-knitr all 1.49+dfsg-1 [861 kB]
Get: 366 http://deb.debian.org/debian unstable/main amd64 r-cran-fontawesome all 0.5.2-1 [1286 kB]
Get: 367 http://deb.debian.org/debian unstable/main amd64 r-cran-tinytex all 0.53-1 [146 kB]
Get: 368 http://deb.debian.org/debian unstable/main amd64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB]
Get: 369 http://deb.debian.org/debian unstable/main amd64 r-cran-rcpp amd64 1.0.13-1-1 [2074 kB]
Get: 370 http://deb.debian.org/debian unstable/main amd64 r-cran-later amd64 1.3.2+dfsg-1 [118 kB]
Get: 371 http://deb.debian.org/debian unstable/main amd64 r-cran-promises amd64 1.3.0+dfsg-1 [284 kB]
Get: 372 http://deb.debian.org/debian unstable/main amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [493 kB]
Get: 373 http://deb.debian.org/debian unstable/main amd64 r-cran-xtable all 1:1.8-4-2 [689 kB]
Get: 374 http://deb.debian.org/debian unstable/main amd64 r-cran-sourcetools amd64 0.1.7-1-1 [45.9 kB]
Get: 375 http://deb.debian.org/debian unstable/main amd64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB]
Get: 376 http://deb.debian.org/debian unstable/main amd64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB]
Get: 377 http://deb.debian.org/debian unstable/main amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
Get: 378 http://deb.debian.org/debian unstable/main amd64 r-cran-lattice amd64 0.22-6-1 [1392 kB]
Get: 379 http://deb.debian.org/debian unstable/main amd64 r-cran-matrix amd64 1.7-1-1 [4138 kB]
Get: 380 http://deb.debian.org/debian unstable/main amd64 r-cran-igraph amd64 2.0.3-1 [5037 kB]
Get: 381 http://deb.debian.org/debian unstable/main amd64 r-cran-purrr amd64 1.0.2-1 [507 kB]
Get: 382 http://deb.debian.org/debian unstable/main amd64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get: 383 http://deb.debian.org/debian unstable/main amd64 r-cran-tzdb amd64 0.4.0-2 [499 kB]
Get: 384 http://deb.debian.org/debian unstable/main amd64 r-cran-vroom amd64 1.6.5-1 [830 kB]
Get: 385 http://deb.debian.org/debian unstable/main amd64 r-cran-readr amd64 2.1.5-1 [759 kB]
Get: 386 http://deb.debian.org/debian unstable/main amd64 r-cran-rstudioapi all 0.17.1-1 [307 kB]
Get: 387 http://deb.debian.org/debian unstable/main amd64 r-cran-farver amd64 2.1.2-1 [1411 kB]
Get: 388 http://deb.debian.org/debian unstable/main amd64 r-cran-labeling all 0.4.3-1 [62.4 kB]
Get: 389 http://deb.debian.org/debian unstable/main amd64 r-cran-munsell all 0.5.1-1 [237 kB]
Get: 390 http://deb.debian.org/debian unstable/main amd64 r-cran-viridislite all 0.4.2-2 [1299 kB]
Get: 391 http://deb.debian.org/debian unstable/main amd64 r-cran-scales all 1.3.0-1 [677 kB]
Get: 392 http://deb.debian.org/debian unstable/main amd64 r-cran-stringr all 1.5.1-1 [296 kB]
Get: 393 http://deb.debian.org/debian unstable/main amd64 r-cran-tidyr amd64 1.3.1-1 [1163 kB]
Get: 394 http://deb.debian.org/debian unstable/main amd64 r-cran-visnetwork all 2.1.2+ds-1 [2983 kB]
Get: 395 http://deb.debian.org/debian unstable/main amd64 r-cran-diagrammer all 1.0.11+ds-2 [1505 kB]
Get: 396 http://deb.debian.org/debian unstable/main amd64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB]
Get: 397 http://deb.debian.org/debian unstable/main amd64 r-cran-r.oo all 1.26.0-1 [961 kB]
Get: 398 http://deb.debian.org/debian unstable/main amd64 r-cran-r.utils all 2.12.3-1 [1396 kB]
Fetched 255 MB in 4s (72.3 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.12-minimal:amd64.
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Unpacking python3.12-minimal (3.12.7-3) ...
Setting up libpython3.12-minimal:amd64 (3.12.7-3) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
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Selecting previously unselected package python3-minimal.
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Setting up libpng-dev:amd64 (1.6.44-2) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b2) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-1+b1) ...
Setting up libldap-2.5-0:amd64 (2.5.18+dfsg-3+b1) ...
Setting up gfortran-14-x86-64-linux-gnu (14.2.0-8) ...
Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
Setting up pkgconf:amd64 (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:amd64 (0.1.29-2+b1) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up pandoc (3.1.11.1+ds-2) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up libglpk40:amd64 (5.0-1+b2) ...
Setting up liblapack-dev:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libgssapi-krb5-2:amd64 (1.21.3-3) ...
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Setting up libgvpr2:amd64 (2.42.4-2+b1) ...
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Setting up libxslt1.1:amd64 (1.1.35-1.1+b1) ...
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Setting up libxss1:amd64 (1:1.2.3-1+b2) ...
Setting up libfontconfig1:amd64 (2.15.0-1.1+b1) ...
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Setting up libpaper1:amd64 (1.1.29+b2) ...

Creating config file /etc/papersize with new version
Setting up fontconfig (2.15.0-1.1+b1) ...
Regenerating fonts cache... done.
Setting up libavif16:amd64 (1.1.1-1) ...
Setting up libxft2:amd64 (2.3.6-1+b2) ...
Setting up libcurl4t64:amd64 (8.11.0-1) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:amd64 (8.6.15-1) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libpango-1.0-0:amd64 (1.54.0+ds-3) ...
Setting up libcurl3t64-gnutls:amd64 (8.11.0-1) ...
Setting up libwww-curl-perl:amd64 (4.17-11) ...
Setting up libpaper-utils (1.1.29+b2) ...
Setting up libreadline-dev:amd64 (8.2-5) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ...
Setting up gfortran (4:14.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:amd64 (1.18.2-2) ...
Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3+b1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libraqm0:amd64 (0.10.1-1+b2) ...
Setting up libxt6t64:amd64 (1:1.2.1-1.2+b1) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libnsl2:amd64 (1.3.0-3+b3) ...
Setting up libpangoft2-1.0-0:amd64 (1.54.0+ds-3) ...
Setting up libpangocairo-1.0-0:amd64 (1.54.0+ds-3) ...
Setting up libxmu6:amd64 (2:1.1.3-3+b3) ...
Setting up libpython3.12-stdlib:amd64 (3.12.7-3) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up python3.12 (3.12.7-3) ...
Setting up debhelper (13.20) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libxaw7:amd64 (2:1.0.16-1) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.4.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-sourcetools (0.1.7-1-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.22-6-1) ...
Setting up r-cran-farver (2.1.2-1) ...
Setting up r-cran-formatr (1.14-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b4) ...
Setting up r-cran-clipr (0.8.0-1) ...
Setting up r-cran-commonmark (1.9.2-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.4-1) ...
Setting up libb-hooks-endofscope-perl (0.28-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up libpython3-stdlib:amd64 (3.12.7-1) ...
Setting up r-cran-littler (0.3.20-1) ...
Setting up r-cran-bh (1.84.0-1) ...
Setting up r-cran-fs (1.6.4+dfsg-1) ...
Setting up r-cran-rcpp (1.0.13-1-1) ...
Setting up r-cran-codetools (0.2-20-1) ...
Setting up r-bioc-biocgenerics (0.50.0-2) ...
Setting up r-cran-rlang (1.1.4-1) ...
Setting up r-base-dev (4.4.2-1) ...
Setting up littler (0.3.20-1) ...
Setting up r-cran-xfun (0.49+dfsg-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-backports (1.5.0-2) ...
Setting up r-cran-mime (0.12-2) ...
Setting up libmoose-perl:amd64 (2.2207-1+b2) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-base64enc (0.1-3-3) ...
Setting up r-cran-digest (0.6.37-1) ...
Setting up r-cran-yaml (2.3.10-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-evaluate (1.0.0-1) ...
Setting up r-cran-highr (0.11+dfsg-1) ...
Setting up r-cran-prettyunits (1.2.0-1) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-checkmate (2.3.2-1) ...
Setting up python3 (3.12.7-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up r-cran-data.table (1.16.2+dfsg-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up r-cran-glue (1.7.0-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.6.3-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up python3-psutil (5.9.8-2) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-cran-fastmap (1.2.0-1) ...
Setting up r-cran-r.methodss3 (1.8.2-1) ...
Setting up r-cran-jsonlite (1.8.9+dfsg-1) ...
Setting up r-cran-rstudioapi (0.17.1-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-brew (1.0-10-1) ...
Setting up python3-packaging (24.2-1) ...
Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
Setting up r-cran-stringi (1.8.4-1) ...
Setting up python3-pyparsing (3.1.2-1) ...
Setting up python3-humanfriendly (10.0-6) ...
Setting up python3-certifi (2024.8.30+dfsg-1) ...
Setting up python3-spython (0.3.13-2) ...
Setting up r-cran-cpp11 (0.5.0-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up python3-idna (3.8-2) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up r-cran-later (1.3.2+dfsg-1) ...
Setting up r-cran-matrix (1.7-1-1) ...
Setting up r-cran-htmltools (0.5.8.1-1) ...
Setting up r-cran-tinytex (0.53-1) ...
Setting up python3-urllib3 (2.0.7-2) ...
Setting up r-cran-knitr (1.49+dfsg-1) ...
Setting up python3-lxml:amd64 (5.3.0-1+b1) ...
Setting up python3-rdflib (7.1.1-2) ...
Setting up r-cran-cachem (1.1.0-1) ...
Setting up r-cran-sass (0.4.9+dfsg-1) ...
Setting up python3-dateutil (2.9.0-3) ...
Setting up python3-msgpack (1.0.3-3+b3) ...
Setting up r-cran-tzdb (0.4.0-2) ...
Setting up python3-argcomplete (3.5.1-1) ...
Setting up python3-coloredlogs (15.0.1-1) ...
Setting up python3-mistune (3.0.2-2) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-arcp (0.2.1-6) ...
Setting up r-cran-base64url (1.4-2+b1) ...
Setting up python3-filelock (3.16.1-1) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up r-bioc-biocparallel (1.38.0-2) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up python3-charset-normalizer (3.4.0-1+b1) ...
Setting up python3-mypy-extensions (1.0.0-1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-ruamel.yaml.clib:amd64 (0.2.8+ds-2+b1) ...
Setting up r-cran-munsell (0.5.1-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-cran-fontawesome (0.5.2-1) ...
Setting up r-cran-igraph (2.0.3-1) ...
Setting up r-cran-r.oo (1.26.0-1) ...
Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up r-cran-hms (1.1.3-1) ...
Setting up r-cran-scales (1.3.0-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-promises (1.3.0+dfsg-1) ...
Setting up r-cran-purrr (1.0.2-1) ...
Setting up python3-ruamel.yaml (0.18.6+ds-3) ...
Setting up r-cran-dplyr (1.1.4-2) ...
Setting up dh-r (20231212) ...
Setting up r-cran-progress (1.2.3-1) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up r-cran-r.utils (2.12.3-1) ...
Setting up r-cran-vroom (1.6.5-1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
Setting up python3-networkx (3.2.1-5) ...
Setting up python3-prov (2.0.1-1) ...
Setting up python3-chardet (5.2.0+dfsg-1) ...
Setting up r-cran-bslib (0.7.0+dfsg-1) ...
Setting up r-cran-readr (2.1.5-1) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up r-cran-tidyr (1.3.1-1) ...
Setting up r-cran-batchtools (0.9.17+dfsg-1) ...
Setting up python3-cachecontrol (0.14.1-1) ...
Setting up python3-schema-salad (8.7.20240905150001-1+b1) ...
Setting up r-cran-shiny (1.9.1+dfsg-1) ...
Setting up cwl-upgrader (1.2.11-1) ...
Setting up r-cran-rmarkdown (2.28+dfsg-1) ...
Setting up python3-cwl-utils (0.35-1) ...
Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
Setting up r-cran-visnetwork (2.1.2+ds-1) ...
Setting up r-cran-diagrammer (1.0.11+ds-2) ...
Setting up libheif-plugin-dav1d:amd64 (1.19.3-1) ...
Setting up libheif-plugin-libde265:amd64 (1.19.3-1) ...
Setting up libheif1:amd64 (1.19.3-1) ...
Setting up libgd3:amd64 (2.3.3-12+b1) ...
Setting up libgvc6 (2.42.4-2+b1) ...
Setting up graphviz (2.42.4-2+b1) ...
Setting up python3-pydot (2.0.0-3) ...
Setting up cwltool (3.1.20241024121129-1) ...
Processing triggers for libc-bin (2.40-4) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/r-bioc-rcwl-1.22.0+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../r-bioc-rcwl_1.22.0+ds-1_source.changes
dpkg-buildpackage: info: source package r-bioc-rcwl
dpkg-buildpackage: info: source version 1.22.0+ds-1
dpkg-buildpackage: info: source distribution experimental
dpkg-buildpackage: info: source changed by Michael R. Crusoe <crusoe@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary
dh binary --buildsystem R
   dh_update_autotools_config -O--buildsystem=R
   dh_autoreconf -O--buildsystem=R
   dh_auto_configure -O--buildsystem=R
   dh_auto_build -O--buildsystem=R
   dh_auto_test -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=R
   dh_prep -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-rcwl/ -O--buildsystem=R
I: R Package: Rcwl Version: 1.22.0
I: Building using R version 4.4.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 26 Nov 2024 18:15:50 +0100
	mkdir -p /build/reproducible-path/r-bioc-rcwl-1.22.0\+ds/debian/r-bioc-rcwl/usr/lib/R/site-library
	R CMD INSTALL -l /build/reproducible-path/r-bioc-rcwl-1.22.0\+ds/debian/r-bioc-rcwl/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 26 Nov 2024 18:15:50 +0100'"
* installing *source* package 'Rcwl' ...
files 'R/basilisk.R', 'R/install_cwltool.R', 'R/install_udocker.R', 'configure', 'inst/doc/Rcwl.html', 'man/env_Rcwl.Rd' are missing
files 'DESCRIPTION', 'NAMESPACE', 'R/runCWL.R', 'tests/testthat/test_all.R', 'vignettes/Rcwl.Rmd' have the wrong MD5 checksums
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (Rcwl)
	rm -f /build/reproducible-path/r-bioc-rcwl-1.22.0\+ds/debian/r-bioc-rcwl/usr/lib/R/site-library/Rcwl/LICENSE
W: Ignoring specified R dependency: R (>= 3.6)
I: Using r-cran-yaml for Depends:yaml
I: Using r-bioc-s4vectors for Depends:S4Vectors
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-cran-batchtools for Imports:batchtools
I: Using r-cran-diagrammer for Imports:DiagrammeR
I: Using r-cran-shiny for Imports:shiny
I: Using r-cran-r.utils for Imports:R.utils
I: Using r-cran-codetools for Imports:codetools
I: BioConductor API version: r-api-bioc-3.20
I: Use r-bioc-rcwl as Debian binary package for variables substitution
   dh_installdocs -O--buildsystem=R
   dh_installchangelogs -O--buildsystem=R
   dh_installsystemduser -O--buildsystem=R
   dh_perl -O--buildsystem=R
   dh_link -O--buildsystem=R
   dh_strip_nondeterminism -O--buildsystem=R
   dh_compress -O--buildsystem=R
   dh_fixperms -O--buildsystem=R
   dh_missing -O--buildsystem=R
   dh_installdeb -O--buildsystem=R
   dh_gencontrol -O--buildsystem=R
   dh_md5sums -O--buildsystem=R
   dh_builddeb -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rcwl' in '../r-bioc-rcwl_1.22.0+ds-1_all.deb'.
 dpkg-genbuildinfo --build=binary -O../r-bioc-rcwl_1.22.0+ds-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../r-bioc-rcwl_1.22.0+ds-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2380514 and its subdirectories
I: Current time: Mon Dec 29 18:43:29 -12 2025
I: pbuilder-time-stamp: 1767077009