W: cgroups are not available on the host, not using them.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Jul  5 09:07:22 -12 2026
I: pbuilder-time-stamp: 1783285642
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [openstructure_2.10.0-1~exp.dsc]
I: copying [./openstructure_2.10.0.orig.tar.xz]
I: copying [./openstructure_2.10.0-1~exp.debian.tar.xz]
I: Extracting source
error: the following required arguments were not provided:
  --keyring <FILE>

Usage: sqv --keyring <FILE> --cleartext --output <FILE> <FILE>

For more information, try '--help'.
dpkg-source: warning: cannot verify inline signature for ./openstructure_2.10.0-1~exp.dsc: no acceptable signature found
dpkg-source: info: extracting openstructure in openstructure-2.10.0
dpkg-source: info: unpacking openstructure_2.10.0.orig.tar.xz
dpkg-source: info: unpacking openstructure_2.10.0-1~exp.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying python-dist-packages.patch
dpkg-source: info: applying fix-quotes-in-ENV.patch
dpkg-source: info: applying skip-network-tests.patch
dpkg-source: info: applying add-python3-shebangs.patch
dpkg-source: info: applying ost_config.patch
dpkg-source: info: applying skip-dssp-tests.patch
dpkg-source: info: applying increase-tolerance-test_io_sequence_profile.patch
dpkg-source: info: applying skip-test_io_img.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2982794/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='arm64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='experimental'
  HOME='/root'
  HOST_ARCH='arm64'
  IFS=' 	
  '
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2982794'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oPFkvwB9/pbuilderrc_2bl3 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oPFkvwB9/b1 --logfile b1/build.log openstructure_2.10.0-1~exp.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/sbin/chroot'
  http_proxy='http://192.168.101.4:3128'
I: uname -a
  Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 May 12  2025 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2982794/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: clustalw, cmake, debhelper-compat (= 13), dh-python, dssp, libboost-all-dev, libeigen3-dev, libfftw3-dev, libglu1-mesa-dev, libopenmm-dev, libopenmm-plugins, libpng-dev, libqt5opengl5-dev, libsqlite3-dev, libtiff-dev, python3-dev, python3-matplotlib, python3-numpy, python3-pil, python3-pyqt5, python3-scipy, qtbase5-dev, voronota
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19964 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on clustalw; however:
  Package clustalw is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on dssp; however:
  Package dssp is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-all-dev; however:
  Package libboost-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libeigen3-dev; however:
  Package libeigen3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libfftw3-dev; however:
  Package libfftw3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libglu1-mesa-dev; however:
  Package libglu1-mesa-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libopenmm-dev; however:
  Package libopenmm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libopenmm-plugins; however:
  Package libopenmm-plugins is not installed.
 pbuilder-satisfydepends-dummy depends on libpng-dev; however:
  Package libpng-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libqt5opengl5-dev; however:
  Package libqt5opengl5-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however:
  Package libsqlite3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtiff-dev; however:
  Package libtiff-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-dev; however:
  Package python3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
  Package python3-matplotlib is not installed.
 pbuilder-satisfydepends-dummy depends on python3-numpy; however:
  Package python3-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pil; however:
  Package python3-pil is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pyqt5; however:
  Package python3-pyqt5 is not installed.
 pbuilder-satisfydepends-dummy depends on python3-scipy; however:
  Package python3-scipy is not installed.
 pbuilder-satisfydepends-dummy depends on qtbase5-dev; however:
  Package qtbase5-dev is not installed.
 pbuilder-satisfydepends-dummy depends on voronota; however:
  Package voronota is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} clustalw{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dssp{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libamd-comgr2{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-container-dev{a} libboost-container1.83-dev{a} libboost-container1.83.0{a} libboost-context-dev{a} libboost-context1.83-dev{a} libboost-context1.83.0{a} libboost-coroutine-dev{a} libboost-coroutine1.83-dev{a} libboost-coroutine1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.83-dev{a} libboost-fiber-dev{a} libboost-fiber1.83-dev{a} libboost-fiber1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.83-dev{a} libboost-graph-parallel1.83.0{a} libboost-graph1.83-dev{a} libboost-graph1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-json-dev{a} libboost-json1.83-dev{a} libboost-json1.83.0{a} libboost-locale-dev{a} libboost-locale1.83-dev{a} libboost-locale1.83.0{a} libboost-log-dev{a} libboost-log1.83-dev{a} libboost-log1.83.0{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.83-dev{a} libboost-mpi-python1.83.0{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-nowide-dev{a} libboost-nowide1.83-dev{a} libboost-nowide1.83.0{a} libboost-numpy-dev{a} libboost-numpy1.83-dev{a} libboost-numpy1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-random-dev{a} libboost-random1.83-dev{a} libboost-random1.83.0{a} libboost-regex-dev{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.83-dev{a} libboost-stacktrace1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.83-dev{a} libboost-type-erasure1.83.0{a} libboost-url-dev{a} libboost-url1.83-dev{a} libboost-url1.83.0{a} libboost-wave-dev{a} libboost-wave1.83-dev{a} libboost-wave1.83.0{a} libboost1.83-dev{a} libboost1.83-tools-dev{a} libbrotli1{a} libcbor0.10{a} libcifpp-data{a} libcifpp7{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libegl-dev{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgcrypt20{a} libgfortran-14-dev{a} libgfortran5{a} libgl-dev{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglu1-mesa{a} libglu1-mesa-dev{a} libglvnd0{a} libglx-dev{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig-dev{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc-dev{a} liblerc4{a} libllvm17t64{a} libllvm19{a} libltdl-dev{a} libltdl7{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libmunge2{a} libnghttp2-14{a} libnghttp3-9{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopengl-dev{a} libopengl0{a} libopenjp2-7{a} libopenmm-dev{a} libopenmm-plugins{a} libopenmm8.1{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit0{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libpng-dev{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqt5concurrent5t64{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5opengl5-dev{a} libqt5opengl5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libraqm0{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv-dev{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtiff-dev{a} libtiff6{a} libtiffxx6{a} libtk8.6{a} libtool{a} libuchardet0{a} libucx0{a} libunistring5{a} libuv1t64{a} libvulkan-dev{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp-dev{a} libwebp7{a} libwebpdecoder3{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-dev{a} libx11-xcb1{a} libxau-dev{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxnvctrl0{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libz3-4{a} libzopfli1{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-platformdirs{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-scipy{a} python3-sympy{a} python3-tk{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} qt5-qmake{a} qt5-qmake-bin{a} qtbase5-dev{a} qtbase5-dev-tools{a} qtchooser{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} voronota{a} x11-common{a} x11proto-dev{a} xkb-data{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpg-error-l10n libldap-common libmail-sendmail-perl libpng-tools libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch python3-yaml qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xauth xdg-user-dirs 
0 packages upgraded, 442 newly installed, 0 to remove and 0 not upgraded.
Need to get 322 MB of archives. After unpacking 1649 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.3-4 [854 kB]
Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB]
Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.3-4 [2000 kB]
Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.3-1 [27.2 kB]
Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB]
Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB]
Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-3 [260 kB]
Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB]
Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB]
Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.3-4 [1890 kB]
Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.3-4 [751 kB]
Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.3-1 [10.2 kB]
Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.3-1 [28.2 kB]
Get: 15 http://deb.debian.org/debian unstable/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1 [136 kB]
Get: 16 http://deb.debian.org/debian unstable/main arm64 libblas3 arm64 3.12.1-2 [104 kB]
Get: 17 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-19 [361 kB]
Get: 18 http://deb.debian.org/debian unstable/main arm64 liblapack3 arm64 3.12.1-2 [1819 kB]
Get: 19 http://deb.debian.org/debian unstable/main arm64 python3-numpy arm64 1:2.2.4+ds-1 [3604 kB]
Get: 20 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-8 [63.0 kB]
Get: 21 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-8 [873 kB]
Get: 22 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB]
Get: 23 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB]
Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB]
Get: 25 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB]
Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB]
Get: 27 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB]
Get: 28 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-8 [1131 kB]
Get: 29 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB]
Get: 30 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB]
Get: 31 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB]
Get: 32 http://deb.debian.org/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB]
Get: 33 http://deb.debian.org/debian unstable/main arm64 libcbor0.10 arm64 0.10.2-2 [27.4 kB]
Get: 34 http://deb.debian.org/debian unstable/main arm64 libfido2-1 arm64 1.15.0-1+b1 [74.3 kB]
Get: 35 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB]
Get: 36 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB]
Get: 37 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB]
Get: 38 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B]
Get: 39 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB]
Get: 40 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB]
Get: 41 http://deb.debian.org/debian unstable/main arm64 openssh-client arm64 1:10.0p1-5 [924 kB]
Get: 42 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB]
Get: 43 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB]
Get: 44 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB]
Get: 45 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB]
Get: 46 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB]
Get: 47 http://deb.debian.org/debian unstable/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [984 kB]
Get: 48 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB]
Get: 49 http://deb.debian.org/debian unstable/main arm64 libpng16-16t64 arm64 1.6.48-1 [274 kB]
Get: 50 http://deb.debian.org/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB]
Get: 51 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 52 http://deb.debian.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 53 http://deb.debian.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB]
Get: 54 http://deb.debian.org/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-2.3 [387 kB]
Get: 55 http://deb.debian.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get: 56 http://deb.debian.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get: 57 http://deb.debian.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get: 58 http://deb.debian.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB]
Get: 59 http://deb.debian.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB]
Get: 60 http://deb.debian.org/debian unstable/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB]
Get: 61 http://deb.debian.org/debian unstable/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB]
Get: 62 http://deb.debian.org/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get: 63 http://deb.debian.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB]
Get: 64 http://deb.debian.org/debian unstable/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB]
Get: 65 http://deb.debian.org/debian unstable/main arm64 libtk8.6 arm64 8.6.16-1 [741 kB]
Get: 66 http://deb.debian.org/debian unstable/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB]
Get: 67 http://deb.debian.org/debian unstable/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B]
Get: 68 http://deb.debian.org/debian unstable/main arm64 clustalw arm64 2.1+lgpl-7+b2 [256 kB]
Get: 69 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.6-2 [2268 kB]
Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB]
Get: 71 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-3 [323 kB]
Get: 72 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB]
Get: 73 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB]
Get: 74 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB]
Get: 75 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB]
Get: 76 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB]
Get: 77 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB]
Get: 78 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB]
Get: 79 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB]
Get: 80 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB]
Get: 81 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB]
Get: 82 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB]
Get: 83 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB]
Get: 84 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB]
Get: 85 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.14.0-1 [359 kB]
Get: 86 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB]
Get: 87 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB]
Get: 88 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB]
Get: 89 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.6-2 [9906 kB]
Get: 90 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB]
Get: 91 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB]
Get: 92 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 93 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 94 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 95 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 96 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB]
Get: 97 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB]
Get: 98 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB]
Get: 99 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 100 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 101 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB]
Get: 102 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB]
Get: 103 http://deb.debian.org/debian unstable/main arm64 libcifpp-data all 7.0.9-1 [484 kB]
Get: 104 http://deb.debian.org/debian unstable/main arm64 libcifpp7 arm64 7.0.9-1 [862 kB]
Get: 105 http://deb.debian.org/debian unstable/main arm64 dssp arm64 4.4.10-1+b1 [669 kB]
Get: 106 http://deb.debian.org/debian unstable/main arm64 fontconfig arm64 2.15.0-2.3 [463 kB]
Get: 107 http://deb.debian.org/debian unstable/main arm64 fonts-lyx all 2.4.3-1 [190 kB]
Get: 108 http://deb.debian.org/debian unstable/main arm64 libgfortran-14-dev arm64 14.2.0-19 [418 kB]
Get: 109 http://deb.debian.org/debian unstable/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-19 [9794 kB]
Get: 110 http://deb.debian.org/debian unstable/main arm64 gfortran-14 arm64 14.2.0-19 [14.5 kB]
Get: 111 http://deb.debian.org/debian unstable/main arm64 libnl-3-200 arm64 3.7.0-2 [57.1 kB]
Get: 112 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-200 arm64 3.7.0-2 [167 kB]
Get: 113 http://deb.debian.org/debian unstable/main arm64 libibverbs1 arm64 56.1-1 [58.9 kB]
Get: 114 http://deb.debian.org/debian unstable/main arm64 ibverbs-providers arm64 56.1-1 [333 kB]
Get: 115 http://deb.debian.org/debian unstable/main arm64 libicu76 arm64 76.1-4 [9524 kB]
Get: 116 http://deb.debian.org/debian unstable/main arm64 icu-devtools arm64 76.1-4 [200 kB]
Get: 117 http://deb.debian.org/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB]
Get: 118 http://deb.debian.org/debian unstable/main arm64 libllvm17t64 arm64 1:17.0.6-21+b1 [21.3 MB]
Get: 119 http://deb.debian.org/debian unstable/main arm64 libamd-comgr2 arm64 6.0+git20231212.4510c28+dfsg-3+b2 [12.1 MB]
Get: 120 http://deb.debian.org/debian unstable/main arm64 libdrm-common all 2.4.124-2 [8288 B]
Get: 121 http://deb.debian.org/debian unstable/main arm64 libdrm2 arm64 2.4.124-2 [38.3 kB]
Get: 122 http://deb.debian.org/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.124-2 [21.8 kB]
Get: 123 http://deb.debian.org/debian unstable/main arm64 libnuma1 arm64 2.0.19-1 [21.6 kB]
Get: 124 http://deb.debian.org/debian unstable/main arm64 libhsakmt1 arm64 6.2.4+ds-1 [58.3 kB]
Get: 125 http://deb.debian.org/debian unstable/main arm64 libhsa-runtime64-1 arm64 6.1.2-3 [302 kB]
Get: 126 http://deb.debian.org/debian unstable/main arm64 libamdhip64-5 arm64 5.7.1-6 [8824 kB]
Get: 127 http://deb.debian.org/debian unstable/main arm64 libavahi-common-data arm64 0.8-16 [112 kB]
Get: 128 http://deb.debian.org/debian unstable/main arm64 libavahi-common3 arm64 0.8-16 [43.3 kB]
Get: 129 http://deb.debian.org/debian unstable/main arm64 libdbus-1-3 arm64 1.16.2-2 [169 kB]
Get: 130 http://deb.debian.org/debian unstable/main arm64 libavahi-client3 arm64 0.8-16 [46.7 kB]
Get: 131 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4.2 [10.6 MB]
Get: 132 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83.0 arm64 1.83.0-4.2 [234 kB]
Get: 133 http://deb.debian.org/debian unstable/main arm64 libboost-atomic1.83-dev arm64 1.83.0-4.2 [235 kB]
Get: 134 http://deb.debian.org/debian unstable/main arm64 libboost-atomic-dev arm64 1.83.0.2+b2 [3892 B]
Get: 135 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83.0t64 arm64 1.83.0-4.2 [239 kB]
Get: 136 http://deb.debian.org/debian unstable/main arm64 libboost-chrono1.83-dev arm64 1.83.0-4.2 [245 kB]
Get: 137 http://deb.debian.org/debian unstable/main arm64 libboost-chrono-dev arm64 1.83.0.2+b2 [4212 B]
Get: 138 http://deb.debian.org/debian unstable/main arm64 libboost-container1.83.0 arm64 1.83.0-4.2 [259 kB]
Get: 139 http://deb.debian.org/debian unstable/main arm64 libboost-container1.83-dev arm64 1.83.0-4.2 [265 kB]
Get: 140 http://deb.debian.org/debian unstable/main arm64 libboost-container-dev arm64 1.83.0.2+b2 [4064 B]
Get: 141 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83.0 arm64 1.83.0-4.2 [231 kB]
Get: 142 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83.0 arm64 1.83.0-4.2 [325 kB]
Get: 143 http://deb.debian.org/debian unstable/main arm64 libboost-serialization1.83-dev arm64 1.83.0-4.2 [373 kB]
Get: 144 http://deb.debian.org/debian unstable/main arm64 libboost-date-time1.83-dev arm64 1.83.0-4.2 [239 kB]
Get: 145 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83.0 arm64 1.83.0-4.2 [231 kB]
Get: 146 http://deb.debian.org/debian unstable/main arm64 libboost-system1.83-dev arm64 1.83.0-4.2 [232 kB]
Get: 147 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83.0 arm64 1.83.0-4.2 [266 kB]
Get: 148 http://deb.debian.org/debian unstable/main arm64 libboost-thread1.83-dev arm64 1.83.0-4.2 [276 kB]
Get: 149 http://deb.debian.org/debian unstable/main arm64 libboost-context1.83.0 arm64 1.83.0-4.2 [232 kB]
Get: 150 http://deb.debian.org/debian unstable/main arm64 libboost-context1.83-dev arm64 1.83.0-4.2 [233 kB]
Get: 151 http://deb.debian.org/debian unstable/main arm64 libboost-context-dev arm64 1.83.0.2+b2 [3792 B]
Get: 152 http://deb.debian.org/debian unstable/main arm64 libboost-coroutine1.83.0 arm64 1.83.0-4.2 [235 kB]
Get: 153 http://deb.debian.org/debian unstable/main arm64 libboost-coroutine1.83-dev arm64 1.83.0-4.2 [237 kB]
Get: 154 http://deb.debian.org/debian unstable/main arm64 libboost-coroutine-dev arm64 1.83.0.2+b2 [3860 B]
Get: 155 http://deb.debian.org/debian unstable/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B]
Get: 156 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B]
Get: 157 http://deb.debian.org/debian unstable/main arm64 libboost-exception1.83-dev arm64 1.83.0-4.2 [230 kB]
Get: 158 http://deb.debian.org/debian unstable/main arm64 libboost-exception-dev arm64 1.83.0.2+b2 [3572 B]
Get: 159 http://deb.debian.org/debian unstable/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-4.2 [273 kB]
Get: 160 http://deb.debian.org/debian unstable/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-4.2 [292 kB]
Get: 161 http://deb.debian.org/debian unstable/main arm64 libboost-fiber1.83.0 arm64 1.83.0-4.2 [253 kB]
Get: 162 http://deb.debian.org/debian unstable/main arm64 libboost-fiber1.83-dev arm64 1.83.0-4.2 [265 kB]
Get: 163 http://deb.debian.org/debian unstable/main arm64 libboost-fiber-dev arm64 1.83.0.2+b2 [4016 B]
Get: 164 http://deb.debian.org/debian unstable/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B]
Get: 165 http://deb.debian.org/debian unstable/main arm64 libboost-graph1.83.0 arm64 1.83.0-4.2 [342 kB]
Get: 166 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83.0 arm64 1.83.0-4.2 [314 kB]
Get: 167 http://deb.debian.org/debian unstable/main arm64 libicu-dev arm64 76.1-4 [10.6 MB]
Get: 168 http://deb.debian.org/debian unstable/main arm64 libboost-regex1.83-dev arm64 1.83.0-4.2 [335 kB]
Get: 169 http://deb.debian.org/debian unstable/main arm64 libboost-test1.83.0 arm64 1.83.0-4.2 [438 kB]
Get: 170 http://deb.debian.org/debian unstable/main arm64 libboost-test1.83-dev arm64 1.83.0-4.2 [528 kB]
Get: 171 http://deb.debian.org/debian unstable/main arm64 libboost-graph1.83-dev arm64 1.83.0-4.2 [373 kB]
Get: 172 http://deb.debian.org/debian unstable/main arm64 libboost-graph-dev arm64 1.83.0.2+b2 [3688 B]
Get: 173 http://deb.debian.org/debian unstable/main arm64 libevent-core-2.1-7t64 arm64 2.1.12-stable-10+b1 [126 kB]
Get: 174 http://deb.debian.org/debian unstable/main arm64 libevent-pthreads-2.1-7t64 arm64 2.1.12-stable-10+b1 [54.4 kB]
Get: 175 http://deb.debian.org/debian unstable/main arm64 librdmacm1t64 arm64 56.1-1 [67.2 kB]
Get: 176 http://deb.debian.org/debian unstable/main arm64 libfabric1 arm64 2.1.0-1.1 [548 kB]
Get: 177 http://deb.debian.org/debian unstable/main arm64 libhwloc15 arm64 2.12.0-4 [142 kB]
Get: 178 http://deb.debian.org/debian unstable/main arm64 libmunge2 arm64 0.5.16-1 [19.2 kB]
Get: 179 http://deb.debian.org/debian unstable/main arm64 libpciaccess0 arm64 0.17-3+b3 [51.2 kB]
Get: 180 http://deb.debian.org/debian unstable/main arm64 libxnvctrl0 arm64 535.171.04-1+b2 [14.0 kB]
Get: 181 http://deb.debian.org/debian unstable/main arm64 ocl-icd-libopencl1 arm64 2.3.3-1 [42.7 kB]
Get: 182 http://deb.debian.org/debian unstable/main arm64 libhwloc-plugins arm64 2.12.0-4 [18.1 kB]
Get: 183 http://deb.debian.org/debian unstable/main arm64 libpmix2t64 arm64 5.0.7-1 [585 kB]
Get: 184 http://deb.debian.org/debian unstable/main arm64 libibumad3 arm64 56.1-1 [28.6 kB]
Get: 185 http://deb.debian.org/debian unstable/main arm64 libibmad5 arm64 56.1-1 [42.4 kB]
Get: 186 http://deb.debian.org/debian unstable/main arm64 libucx0 arm64 1.18.1+ds-2+b1 [1016 kB]
Get: 187 http://deb.debian.org/debian unstable/main arm64 libopenmpi40 arm64 5.0.7-1 [2087 kB]
Get: 188 http://deb.debian.org/debian unstable/main arm64 libboost-mpi1.83.0 arm64 1.83.0-4.2 [268 kB]
Get: 189 http://deb.debian.org/debian unstable/main arm64 libboost-graph-parallel1.83.0 arm64 1.83.0-4.2 [276 kB]
Get: 190 http://deb.debian.org/debian unstable/main arm64 libboost-graph-parallel1.83-dev arm64 1.83.0-4.2 [284 kB]
Get: 191 http://deb.debian.org/debian unstable/main arm64 libboost-graph-parallel-dev arm64 1.83.0.2+b2 [3716 B]
Get: 192 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-4.2 [261 kB]
Get: 193 http://deb.debian.org/debian unstable/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B]
Get: 194 http://deb.debian.org/debian unstable/main arm64 libboost-json1.83.0 arm64 1.83.0-4.2 [348 kB]
Get: 195 http://deb.debian.org/debian unstable/main arm64 libboost-json1.83-dev arm64 1.83.0-4.2 [372 kB]
Get: 196 http://deb.debian.org/debian unstable/main arm64 libboost-json-dev arm64 1.83.0.2+b2 [3696 B]
Get: 197 http://deb.debian.org/debian unstable/main arm64 libboost-locale1.83.0 arm64 1.83.0-4.2 [440 kB]
Get: 198 http://deb.debian.org/debian unstable/main arm64 libboost-locale1.83-dev arm64 1.83.0-4.2 [543 kB]
Get: 199 http://deb.debian.org/debian unstable/main arm64 libboost-locale-dev arm64 1.83.0.2+b2 [3916 B]
Get: 200 http://deb.debian.org/debian unstable/main arm64 libboost-log1.83.0 arm64 1.83.0-4.2 [645 kB]
Get: 201 http://deb.debian.org/debian unstable/main arm64 libboost-log1.83-dev arm64 1.83.0-4.2 [849 kB]
Get: 202 http://deb.debian.org/debian unstable/main arm64 libboost-log-dev arm64 1.83.0.2+b2 [3788 B]
Get: 203 http://deb.debian.org/debian unstable/main arm64 libboost-math1.83.0 arm64 1.83.0-4.2 [471 kB]
Get: 204 http://deb.debian.org/debian unstable/main arm64 libboost-math1.83-dev arm64 1.83.0-4.2 [536 kB]
Get: 205 http://deb.debian.org/debian unstable/main arm64 libboost-math-dev arm64 1.83.0.2+b2 [3784 B]
Get: 206 http://deb.debian.org/debian unstable/main arm64 openmpi-common all 5.0.7-1 [97.2 kB]
Get: 207 http://deb.debian.org/debian unstable/main arm64 libnl-3-dev arm64 3.7.0-2 [102 kB]
Get: 208 http://deb.debian.org/debian unstable/main arm64 libnl-route-3-dev arm64 3.7.0-2 [199 kB]
Get: 209 http://deb.debian.org/debian unstable/main arm64 libibverbs-dev arm64 56.1-1 [642 kB]
Get: 210 http://deb.debian.org/debian unstable/main arm64 libnuma-dev arm64 2.0.19-1 [37.6 kB]
Get: 211 http://deb.debian.org/debian unstable/main arm64 libltdl7 arm64 2.5.4-4 [415 kB]
Get: 212 http://deb.debian.org/debian unstable/main arm64 libltdl-dev arm64 2.5.4-4 [168 kB]
Get: 213 http://deb.debian.org/debian unstable/main arm64 libhwloc-dev arm64 2.12.0-4 [239 kB]
Get: 214 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB]
Get: 215 http://deb.debian.org/debian unstable/main arm64 libevent-extra-2.1-7t64 arm64 2.1.12-stable-10+b1 [102 kB]
Get: 216 http://deb.debian.org/debian unstable/main arm64 libevent-openssl-2.1-7t64 arm64 2.1.12-stable-10+b1 [60.4 kB]
Get: 217 http://deb.debian.org/debian unstable/main arm64 libevent-dev arm64 2.1.12-stable-10+b1 [304 kB]
Get: 218 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Get: 219 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 220 http://deb.debian.org/debian unstable/main arm64 libpmix-dev arm64 5.0.7-1 [3947 kB]
Get: 221 http://deb.debian.org/debian unstable/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 222 http://deb.debian.org/debian unstable/main arm64 openmpi-bin arm64 5.0.7-1 [180 kB]
Get: 223 http://deb.debian.org/debian unstable/main arm64 libopenmpi-dev arm64 5.0.7-1 [1089 kB]
Get: 224 http://deb.debian.org/debian unstable/main arm64 mpi-default-dev arm64 1.18 [3372 B]
Get: 225 http://deb.debian.org/debian unstable/main arm64 libboost-mpi1.83-dev arm64 1.83.0-4.2 [291 kB]
Get: 226 http://deb.debian.org/debian unstable/main arm64 libboost-mpi-dev arm64 1.83.0.2+b2 [3668 B]
Get: 227 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83.0 arm64 1.83.0-4.2 [296 kB]
Get: 228 http://deb.debian.org/debian unstable/main arm64 mpi-default-bin arm64 1.18 [2576 B]
Get: 229 http://deb.debian.org/debian unstable/main arm64 libboost-mpi-python1.83.0 arm64 1.83.0-4.2 [343 kB]
Get: 230 http://deb.debian.org/debian unstable/main arm64 libboost-mpi-python1.83-dev arm64 1.83.0-4.2 [237 kB]
Get: 231 http://deb.debian.org/debian unstable/main arm64 libboost-mpi-python-dev arm64 1.83.0.2+b2 [3700 B]
Get: 232 http://deb.debian.org/debian unstable/main arm64 libboost-nowide1.83.0 arm64 1.83.0-4.2 [234 kB]
Get: 233 http://deb.debian.org/debian unstable/main arm64 libboost-nowide1.83-dev arm64 1.83.0-4.2 [236 kB]
Get: 234 http://deb.debian.org/debian unstable/main arm64 libboost-nowide-dev arm64 1.83.0.2+b2 [3660 B]
Get: 235 http://deb.debian.org/debian unstable/main arm64 libboost-numpy1.83.0 arm64 1.83.0-4.2 [241 kB]
Get: 236 http://deb.debian.org/debian unstable/main arm64 libboost-numpy1.83-dev arm64 1.83.0-4.2 [246 kB]
Get: 237 http://deb.debian.org/debian unstable/main arm64 libboost-numpy-dev arm64 1.83.0.2+b2 [3632 B]
Get: 238 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-4.2 [331 kB]
Get: 239 http://deb.debian.org/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-4.2 [368 kB]
Get: 240 http://deb.debian.org/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B]
Get: 241 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.3-4 [1974 kB]
Get: 242 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.7.1-1 [145 kB]
Get: 243 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.3-4 [4694 kB]
Get: 244 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.3-1 [10.4 kB]
Get: 245 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.3-4 [504 kB]
Get: 246 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 247 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB]
Get: 248 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.3-1 [26.1 kB]
Get: 249 http://deb.debian.org/debian unstable/main arm64 libboost-python1.83-dev arm64 1.83.0-4.2 [322 kB]
Get: 250 http://deb.debian.org/debian unstable/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B]
Get: 251 http://deb.debian.org/debian unstable/main arm64 libboost-random1.83.0 arm64 1.83.0-4.2 [238 kB]
Get: 252 http://deb.debian.org/debian unstable/main arm64 libboost-random1.83-dev arm64 1.83.0-4.2 [241 kB]
Get: 253 http://deb.debian.org/debian unstable/main arm64 libboost-random-dev arm64 1.83.0.2+b2 [3584 B]
Get: 254 http://deb.debian.org/debian unstable/main arm64 libboost-regex-dev arm64 1.83.0.2+b2 [3852 B]
Get: 255 http://deb.debian.org/debian unstable/main arm64 libboost-serialization-dev arm64 1.83.0.2+b2 [3816 B]
Get: 256 http://deb.debian.org/debian unstable/main arm64 libboost-stacktrace1.83.0 arm64 1.83.0-4.2 [277 kB]
Get: 257 http://deb.debian.org/debian unstable/main arm64 libboost-stacktrace1.83-dev arm64 1.83.0-4.2 [245 kB]
Get: 258 http://deb.debian.org/debian unstable/main arm64 libboost-stacktrace-dev arm64 1.83.0.2+b2 [3580 B]
Get: 259 http://deb.debian.org/debian unstable/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B]
Get: 260 http://deb.debian.org/debian unstable/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B]
Get: 261 http://deb.debian.org/debian unstable/main arm64 libboost-thread-dev arm64 1.83.0.2+b2 [3616 B]
Get: 262 http://deb.debian.org/debian unstable/main arm64 libboost-timer1.83.0 arm64 1.83.0-4.2 [235 kB]
Get: 263 http://deb.debian.org/debian unstable/main arm64 libboost-timer1.83-dev arm64 1.83.0-4.2 [237 kB]
Get: 264 http://deb.debian.org/debian unstable/main arm64 libboost-timer-dev arm64 1.83.0.2+b2 [3712 B]
Get: 265 http://deb.debian.org/debian unstable/main arm64 libboost1.83-tools-dev arm64 1.83.0-4.2 [1408 kB]
Get: 266 http://deb.debian.org/debian unstable/main arm64 libboost-tools-dev arm64 1.83.0.2+b2 [3764 B]
Get: 267 http://deb.debian.org/debian unstable/main arm64 libboost-type-erasure1.83.0 arm64 1.83.0-4.2 [245 kB]
Get: 268 http://deb.debian.org/debian unstable/main arm64 libboost-type-erasure1.83-dev arm64 1.83.0-4.2 [250 kB]
Get: 269 http://deb.debian.org/debian unstable/main arm64 libboost-type-erasure-dev arm64 1.83.0.2+b2 [3676 B]
Get: 270 http://deb.debian.org/debian unstable/main arm64 libboost-url1.83.0 arm64 1.83.0-4.2 [328 kB]
Get: 271 http://deb.debian.org/debian unstable/main arm64 libboost-url1.83-dev arm64 1.83.0-4.2 [423 kB]
Get: 272 http://deb.debian.org/debian unstable/main arm64 libboost-url-dev arm64 1.83.0.2+b2 [3720 B]
Get: 273 http://deb.debian.org/debian unstable/main arm64 libboost-wave1.83.0 arm64 1.83.0-4.2 [416 kB]
Get: 274 http://deb.debian.org/debian unstable/main arm64 libboost-wave1.83-dev arm64 1.83.0-4.2 [492 kB]
Get: 275 http://deb.debian.org/debian unstable/main arm64 libboost-wave-dev arm64 1.83.0.2+b2 [3616 B]
Get: 276 http://deb.debian.org/debian unstable/main arm64 libboost-all-dev arm64 1.83.0.2+b2 [3924 B]
Get: 277 http://deb.debian.org/debian unstable/main arm64 libcups2t64 arm64 2.4.10-3 [235 kB]
Get: 278 http://deb.debian.org/debian unstable/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB]
Get: 279 http://deb.debian.org/debian unstable/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB]
Get: 280 http://deb.debian.org/debian unstable/main arm64 libdouble-conversion3 arm64 3.3.1-1 [37.3 kB]
Get: 281 http://deb.debian.org/debian unstable/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB]
Get: 282 http://deb.debian.org/debian unstable/main arm64 libwayland-server0 arm64 1.23.1-3 [33.7 kB]
Get: 283 http://deb.debian.org/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-3 [23.3 MB]
Get: 284 http://deb.debian.org/debian unstable/main arm64 libsensors-config all 1:3.6.2-2 [16.2 kB]
Get: 285 http://deb.debian.org/debian unstable/main arm64 libsensors5 arm64 1:3.6.2-2 [36.4 kB]
Get: 286 http://deb.debian.org/debian unstable/main arm64 libx11-xcb1 arm64 2:1.8.12-1 [247 kB]
Get: 287 http://deb.debian.org/debian unstable/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB]
Get: 288 http://deb.debian.org/debian unstable/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB]
Get: 289 http://deb.debian.org/debian unstable/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB]
Get: 290 http://deb.debian.org/debian unstable/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB]
Get: 291 http://deb.debian.org/debian unstable/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB]
Get: 292 http://deb.debian.org/debian unstable/main arm64 libxshmfence1 arm64 1.3.3-1 [11.1 kB]
Get: 293 http://deb.debian.org/debian unstable/main arm64 mesa-libgallium arm64 25.0.5-2 [8029 kB]
Get: 294 http://deb.debian.org/debian unstable/main arm64 libgbm1 arm64 25.0.5-2 [43.7 kB]
Get: 295 http://deb.debian.org/debian unstable/main arm64 libwayland-client0 arm64 1.23.1-3 [26.1 kB]
Get: 296 http://deb.debian.org/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get: 297 http://deb.debian.org/debian unstable/main arm64 libegl-mesa0 arm64 25.0.5-2 [120 kB]
Get: 298 http://deb.debian.org/debian unstable/main arm64 libegl1 arm64 1.7.0-1+b2 [34.0 kB]
Get: 299 http://deb.debian.org/debian unstable/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB]
Get: 300 http://deb.debian.org/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b4 [19.2 kB]
Get: 301 http://deb.debian.org/debian unstable/main arm64 libvulkan1 arm64 1.4.309.0-1 [127 kB]
Get: 302 http://deb.debian.org/debian unstable/main arm64 libgl1-mesa-dri arm64 25.0.5-2 [45.5 kB]
Get: 303 http://deb.debian.org/debian unstable/main arm64 libglx-mesa0 arm64 25.0.5-2 [142 kB]
Get: 304 http://deb.debian.org/debian unstable/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB]
Get: 305 http://deb.debian.org/debian unstable/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB]
Get: 306 http://deb.debian.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 307 http://deb.debian.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB]
Get: 308 http://deb.debian.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB]
Get: 309 http://deb.debian.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB]
Get: 310 http://deb.debian.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 311 http://deb.debian.org/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB]
Get: 312 http://deb.debian.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.12-1 [883 kB]
Get: 313 http://deb.debian.org/debian unstable/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB]
Get: 314 http://deb.debian.org/debian unstable/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB]
Get: 315 http://deb.debian.org/debian unstable/main arm64 libegl-dev arm64 1.7.0-1+b2 [19.5 kB]
Get: 316 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB]
Get: 317 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB]
Get: 318 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB]
Get: 319 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB]
Get: 320 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-5 [1034 kB]
Get: 321 http://deb.debian.org/debian unstable/main arm64 libevdev2 arm64 1.13.4+dfsg-1 [30.4 kB]
Get: 322 http://deb.debian.org/debian unstable/main arm64 libfftw3-double3 arm64 3.3.10-2+b1 [337 kB]
Get: 323 http://deb.debian.org/debian unstable/main arm64 libfftw3-long3 arm64 3.3.10-2+b1 [546 kB]
Get: 324 http://deb.debian.org/debian unstable/main arm64 libfftw3-single3 arm64 3.3.10-2+b1 [517 kB]
Get: 325 http://deb.debian.org/debian unstable/main arm64 libfftw3-bin arm64 3.3.10-2+b1 [44.3 kB]
Get: 326 http://deb.debian.org/debian unstable/main arm64 libfftw3-dev arm64 3.3.10-2+b1 [1280 kB]
Get: 327 http://deb.debian.org/debian unstable/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB]
Get: 328 http://deb.debian.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-4 [78.5 kB]
Get: 329 http://deb.debian.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB]
Get: 330 http://deb.debian.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.2-1 [1426 kB]
Get: 331 http://deb.debian.org/debian unstable/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB]
Get: 332 http://deb.debian.org/debian unstable/main arm64 libglu1-mesa arm64 9.0.2-1.1+b3 [162 kB]
Get: 333 http://deb.debian.org/debian unstable/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B]
Get: 334 http://deb.debian.org/debian unstable/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b3 [203 kB]
Get: 335 http://deb.debian.org/debian unstable/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB]
Get: 336 http://deb.debian.org/debian unstable/main arm64 libgudev-1.0-0 arm64 238-6 [13.7 kB]
Get: 337 http://deb.debian.org/debian unstable/main arm64 libharfbuzz0b arm64 10.2.0-1+b1 [442 kB]
Get: 338 http://deb.debian.org/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get: 339 http://deb.debian.org/debian unstable/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB]
Get: 340 http://deb.debian.org/debian unstable/main arm64 libwacom-common all 2.14.0-1 [103 kB]
Get: 341 http://deb.debian.org/debian unstable/main arm64 libwacom9 arm64 2.14.0-1 [24.2 kB]
Get: 342 http://deb.debian.org/debian unstable/main arm64 libinput-bin arm64 1.28.1-1 [26.4 kB]
Get: 343 http://deb.debian.org/debian unstable/main arm64 libmtdev1t64 arm64 1.1.7-1 [22.5 kB]
Get: 344 http://deb.debian.org/debian unstable/main arm64 libinput10 arm64 1.28.1-1 [129 kB]
Get: 345 http://deb.debian.org/debian unstable/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB]
Get: 346 http://deb.debian.org/debian unstable/main arm64 libjbig-dev arm64 2.1-6.1+b2 [30.5 kB]
Get: 347 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB]
Get: 348 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-4 [293 kB]
Get: 349 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-4 [72.2 kB]
Get: 350 http://deb.debian.org/debian unstable/main arm64 liblcms2-2 arm64 2.16-2 [151 kB]
Get: 351 http://deb.debian.org/debian unstable/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB]
Get: 352 http://deb.debian.org/debian unstable/main arm64 liblerc-dev arm64 4.0.0+ds-5 [164 kB]
Get: 353 http://deb.debian.org/debian unstable/main arm64 liblzma-dev arm64 5.8.1-1 [344 kB]
Get: 354 http://deb.debian.org/debian unstable/main arm64 libmd4c0 arm64 0.5.2-2+b1 [46.1 kB]
Get: 355 http://deb.debian.org/debian unstable/main arm64 libopenjp2-7 arm64 2.5.3-2 [190 kB]
Get: 356 http://deb.debian.org/debian unstable/main arm64 libopenmm8.1 arm64 8.1.2+dfsg-11 [921 kB]
Get: 357 http://deb.debian.org/debian unstable/main arm64 libopenmm-dev arm64 8.1.2+dfsg-11 [331 kB]
Get: 358 http://deb.debian.org/debian unstable/main arm64 libopenmm-plugins arm64 8.1.2+dfsg-11 [1242 kB]
Get: 359 http://deb.debian.org/debian unstable/main arm64 libpcre2-16-0 arm64 10.45-1 [247 kB]
Get: 360 http://deb.debian.org/debian unstable/main arm64 libpng-dev arm64 1.6.48-1 [360 kB]
Get: 361 http://deb.debian.org/debian unstable/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB]
Get: 362 http://deb.debian.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b2 [756 kB]
Get: 363 http://deb.debian.org/debian unstable/main arm64 libqt5core5t64 arm64 5.15.15+dfsg-5 [1739 kB]
Get: 364 http://deb.debian.org/debian unstable/main arm64 libqt5concurrent5t64 arm64 5.15.15+dfsg-5 [45.1 kB]
Get: 365 http://deb.debian.org/debian unstable/main arm64 libqt5dbus5t64 arm64 5.15.15+dfsg-5 [206 kB]
Get: 366 http://deb.debian.org/debian unstable/main arm64 libqt5network5t64 arm64 5.15.15+dfsg-5 [651 kB]
Get: 367 http://deb.debian.org/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB]
Get: 368 http://deb.debian.org/debian unstable/main arm64 libxcb-icccm4 arm64 0.4.2-1 [27.2 kB]
Get: 369 http://deb.debian.org/debian unstable/main arm64 libxcb-util1 arm64 0.4.1-1 [23.6 kB]
Get: 370 http://deb.debian.org/debian unstable/main arm64 libxcb-image0 arm64 0.4.0-2+b2 [21.9 kB]
Get: 371 http://deb.debian.org/debian unstable/main arm64 libxcb-keysyms1 arm64 0.4.1-1 [16.8 kB]
Get: 372 http://deb.debian.org/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB]
Get: 373 http://deb.debian.org/debian unstable/main arm64 libxcb-render-util0 arm64 0.3.10-1 [18.5 kB]
Get: 374 http://deb.debian.org/debian unstable/main arm64 libxcb-shape0 arm64 1.17.0-2+b1 [106 kB]
Get: 375 http://deb.debian.org/debian unstable/main arm64 libxcb-xinerama0 arm64 1.17.0-2+b1 [105 kB]
Get: 376 http://deb.debian.org/debian unstable/main arm64 libxcb-xinput0 arm64 1.17.0-2+b1 [130 kB]
Get: 377 http://deb.debian.org/debian unstable/main arm64 libxcb-xkb1 arm64 1.17.0-2+b1 [129 kB]
Get: 378 http://deb.debian.org/debian unstable/main arm64 xkb-data all 2.42-1 [790 kB]
Get: 379 http://deb.debian.org/debian unstable/main arm64 libxkbcommon0 arm64 1.7.0-2 [106 kB]
Get: 380 http://deb.debian.org/debian unstable/main arm64 libxkbcommon-x11-0 arm64 1.7.0-2 [15.2 kB]
Get: 381 http://deb.debian.org/debian unstable/main arm64 libqt5gui5t64 arm64 5.15.15+dfsg-5 [3197 kB]
Get: 382 http://deb.debian.org/debian unstable/main arm64 libqt5widgets5t64 arm64 5.15.15+dfsg-5 [2285 kB]
Get: 383 http://deb.debian.org/debian unstable/main arm64 libqt5xml5t64 arm64 5.15.15+dfsg-5 [122 kB]
Get: 384 http://deb.debian.org/debian unstable/main arm64 libqt5designer5 arm64 5.15.15-6 [2721 kB]
Get: 385 http://deb.debian.org/debian unstable/main arm64 libqt5sql5t64 arm64 5.15.15+dfsg-5 [121 kB]
Get: 386 http://deb.debian.org/debian unstable/main arm64 libqt5help5 arm64 5.15.15-6 [145 kB]
Get: 387 http://deb.debian.org/debian unstable/main arm64 libqt5opengl5t64 arm64 5.15.15+dfsg-5 [145 kB]
Get: 388 http://deb.debian.org/debian unstable/main arm64 libqt5printsupport5t64 arm64 5.15.15+dfsg-5 [199 kB]
Get: 389 http://deb.debian.org/debian unstable/main arm64 libqt5test5t64 arm64 5.15.15+dfsg-5 [139 kB]
Get: 390 http://deb.debian.org/debian unstable/main arm64 libvulkan-dev arm64 1.4.309.0-1 [1556 kB]
Get: 391 http://deb.debian.org/debian unstable/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB]
Get: 392 http://deb.debian.org/debian unstable/main arm64 qt5-qmake-bin arm64 5.15.15+dfsg-5 [923 kB]
Get: 393 http://deb.debian.org/debian unstable/main arm64 qtchooser arm64 66-2+b1 [24.5 kB]
Get: 394 http://deb.debian.org/debian unstable/main arm64 qt5-qmake arm64 5.15.15+dfsg-5 [224 kB]
Get: 395 http://deb.debian.org/debian unstable/main arm64 qtbase5-dev-tools arm64 5.15.15+dfsg-5 [721 kB]
Get: 396 http://deb.debian.org/debian unstable/main arm64 qtbase5-dev arm64 5.15.15+dfsg-5 [1121 kB]
Get: 397 http://deb.debian.org/debian unstable/main arm64 libqt5opengl5-dev arm64 5.15.15+dfsg-5 [51.7 kB]
Get: 398 http://deb.debian.org/debian unstable/main arm64 libraqm0 arm64 0.10.2-1 [13.6 kB]
Get: 399 http://deb.debian.org/debian unstable/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB]
Get: 400 http://deb.debian.org/debian unstable/main arm64 libsharpyuv-dev arm64 1.5.0-0.1 [118 kB]
Get: 401 http://deb.debian.org/debian unstable/main arm64 libsqlite3-dev arm64 3.46.1-6 [1060 kB]
Get: 402 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1 [335 kB]
Get: 403 http://deb.debian.org/debian unstable/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB]
Get: 404 http://deb.debian.org/debian unstable/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB]
Get: 405 http://deb.debian.org/debian unstable/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB]
Get: 406 http://deb.debian.org/debian unstable/main arm64 libwebpdecoder3 arm64 1.5.0-0.1 [182 kB]
Get: 407 http://deb.debian.org/debian unstable/main arm64 libwebp-dev arm64 1.5.0-0.1 [406 kB]
Get: 408 http://deb.debian.org/debian unstable/main arm64 libtiff6 arm64 4.7.0-3 [325 kB]
Get: 409 http://deb.debian.org/debian unstable/main arm64 libtiffxx6 arm64 4.7.0-3 [164 kB]
Get: 410 http://deb.debian.org/debian unstable/main arm64 libtiff-dev arm64 4.7.0-3 [471 kB]
Get: 411 http://deb.debian.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.2 [221 kB]
Get: 412 http://deb.debian.org/debian unstable/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB]
Get: 413 http://deb.debian.org/debian unstable/main arm64 python-matplotlib-data all 3.10.1+dfsg1-4 [2737 kB]
Get: 414 http://deb.debian.org/debian unstable/main arm64 python3-attr all 25.3.0-1 [69.5 kB]
Get: 415 http://deb.debian.org/debian unstable/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB]
Get: 416 http://deb.debian.org/debian unstable/main arm64 python3-contourpy arm64 1.3.1-1+b1 [190 kB]
Get: 417 http://deb.debian.org/debian unstable/main arm64 python3-cycler all 0.12.1-1 [9496 B]
Get: 418 http://deb.debian.org/debian unstable/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB]
Get: 419 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.2.1-2 [33.0 kB]
Get: 420 http://deb.debian.org/debian unstable/main arm64 python3-platformdirs all 4.3.7-1 [16.6 kB]
Get: 421 http://deb.debian.org/debian unstable/main arm64 python3-fs all 2.4.16-7 [95.2 kB]
Get: 422 http://deb.debian.org/debian unstable/main arm64 python3-lxml arm64 5.4.0-1 [1139 kB]
Get: 423 http://deb.debian.org/debian unstable/main arm64 python3-lz4 arm64 4.4.0+dfsg-2 [25.3 kB]
Get: 424 http://deb.debian.org/debian unstable/main arm64 python3-scipy arm64 1.15.3-1 [14.9 MB]
Get: 425 http://deb.debian.org/debian unstable/main arm64 python3-mpmath all 1.3.0-1 [419 kB]
Get: 426 http://deb.debian.org/debian unstable/main arm64 python3-sympy all 1.13.3-5 [4148 kB]
Get: 427 http://deb.debian.org/debian unstable/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB]
Get: 428 http://deb.debian.org/debian unstable/main arm64 python3-unicodedata2 arm64 15.1.0+ds-1+b5 [298 kB]
Get: 429 http://deb.debian.org/debian unstable/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB]
Get: 430 http://deb.debian.org/debian unstable/main arm64 unicode-data all 15.1.0-1 [8547 kB]
Get: 431 http://deb.debian.org/debian unstable/main arm64 python3-fonttools arm64 4.57.0-1 [1366 kB]
Get: 432 http://deb.debian.org/debian unstable/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB]
Get: 433 http://deb.debian.org/debian unstable/main arm64 python3-pil arm64 11.1.0-5+b1 [495 kB]
Get: 434 http://deb.debian.org/debian unstable/main arm64 python3.13-tk arm64 3.13.3-4 [105 kB]
Get: 435 http://deb.debian.org/debian unstable/main arm64 python3-tk arm64 3.13.3-1 [9548 B]
Get: 436 http://deb.debian.org/debian unstable/main arm64 python3-pil.imagetk arm64 11.1.0-5+b1 [81.8 kB]
Get: 437 http://deb.debian.org/debian unstable/main arm64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 438 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB]
Get: 439 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-4 [23.7 MB]
Get: 440 http://deb.debian.org/debian unstable/main arm64 python3-pyqt5.sip arm64 12.17.0-1+b1 [59.9 kB]
Get: 441 http://deb.debian.org/debian unstable/main arm64 python3-pyqt5 arm64 5.15.11+dfsg-2 [2325 kB]
Get: 442 http://deb.debian.org/debian unstable/main arm64 voronota arm64 1.29.4307+ds-2 [2574 kB]
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Current default time zone: 'Etc/UTC'
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Universal Time is now:  Sun Jul  5 21:08:28 UTC 2026.
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 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/openstructure-2.10.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../openstructure_2.10.0-1~exp_source.changes
dpkg-buildpackage: info: source package openstructure
dpkg-buildpackage: info: source version 2.10.0-1~exp
dpkg-buildpackage: info: source distribution experimental
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean --with python3
   dh_clean
 debian/rules binary
dh binary --with python3
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/openstructure-2.10.0'
dh_auto_configure -- -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DOPTIMIZE=ON -DUBUNTU_LAYOUT=ON -DENABLE_MM=ON -DOPEN_MM_PLUGIN_DIR=/usr/lib/aarch64-linux-gnu/openmm/plugins ..
-- The CXX compiler identification is GNU 14.2.0
-- The C compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
-- Found Python: /usr/bin/python3 (found suitable version "3.13.3", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found OpenGL: /usr/lib/aarch64-linux-gnu/libOpenGL.so
-- Found EIGEN: /usr/include/eigen3 (Required is at least version "3.2.0")
-- Found SQLITE3: /usr/lib/aarch64-linux-gnu/libsqlite3.so (Required is at least version "3.7.13")
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1")
-- Found PNG: /usr/lib/aarch64-linux-gnu/libpng.so (found version "1.6.48")
-- Found FFTW: /usr/lib/aarch64-linux-gnu/libfftw3f.so
-- Found TIFF: /usr/lib/aarch64-linux-gnu/libtiff.so (found version "4.7.0")
-- Found OpenMM: /usr/lib/aarch64-linux-gnu/libOpenMM.so
-- Searching for python module PyQt5 for /usr/bin/python3
-- Found python module PyQt5
-- Searching for python module PyQt5.sip for /usr/bin/python3
-- Found python module PyQt5.sip

-- OpenStructure will be built with the following options:
   Install Prefix                        (-DPREFIX) : /usr
   RPath in install                   (-DUSE_RPATH) : OFF
   Info support                     (-DENABLE_INFO) : ON
   Graphical interface               (-DENABLE_GUI) : ON
   OpenGL support                    (-DENABLE_GFX) : ON
   Shader support                    (-DUSE_SHADER) : OFF
   SpaceNav Device support         (-DENABLE_SPNAV) : OFF
   OpenMM support                     (-DENABLE_MM) : ON
   OpenMM plugins            (-DOPEN_MM_PLUGIN_DIR) : /usr/lib/aarch64-linux-gnu/openmm/plugins
   Parasail alignment library   (-DENABLE_PARASAIL) : OFF
   Optimize                            (-DOPTIMIZE) : ON
   Profiling support                    (-DPROFILE) : OFF
   Double Precision        (-DUSE_DOUBLE_PRECISION) : OFF
   Compound Lib                    (-DCOMPOUND_LIB) : NONE
   TMAlign and TMScore          (-DCOMPILE_TMTOOLS) : OFF
   Static Libraries               (-DENABLE_STATIC) : OFF
   Debian/Ubuntu directory layout (-DUBUNTU_LAYOUT) : ON
   Hidden object visibility  (-DHIDDEN_VISIBILITY) : OFF
-- Configuring done (2.0s)
-- Generating done (0.5s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/openstructure-2.10.0'
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	cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/subst___init__.py.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib
make  -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/subst___init__.py.dir/build.make modules/base/pymod/CMakeFiles/subst___init__.py.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/__init__.py.in -DOUT_FILE=__init__.py -DALL_ADDITIONAL_MODULES=,\'gui\',\'gfx\',\'img\',\'info\' -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
make  -f modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build.make modules/bindings/pymod/CMakeFiles/ost_bindings_pymod.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/bin
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.py
make  -f modules/db/pymod/CMakeFiles/ost_db_pymod.dir/build.make modules/db/pymod/CMakeFiles/ost_db_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/ost_db_pymod.dir/DependInfo.cmake "--color="
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make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec
make  -f modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build.make modules/conop/pymod/CMakeFiles/ost_conop_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.py
make  -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/DependInfo.cmake "--color="
make  -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/scene_icons.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./lga.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/./cleanup.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.py
[  0%] Built target subst___init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share/CMakeFiles/gui_images.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.py
make  -f modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build.make modules/gfx/pymod/CMakeFiles/ost_gfx_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./__init__.py
make  -f modules/gui/share/CMakeFiles/scene_icons.dir/build.make modules/gui/share/CMakeFiles/scene_icons.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/add_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/add_icon.png
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_scene_pymod.dir/DependInfo.cmake "--color="
make  -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hbplus.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/DependInfo.cmake "--color="
make  -f modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build.make modules/geom/pymod/CMakeFiles/ost_geom_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.py
make  -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/depend
[  0%] Built target ost_conop_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/DependInfo.cmake "--color="
make  -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/depend
[  0%] Built target create_stage
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/DependInfo.cmake "--color="
make  -f modules/gui/share/CMakeFiles/gui_images.dir/build.make modules/gui/share/CMakeFiles/gui_images.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./msms.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/images/logo-small.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/images/logo-small.png
make  -f modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/build.make modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/ost_img_alg_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./__init__.py
make  -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/./py_gfx_obj.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/ost_info_pymod.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/close_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/close_icon.png
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build.make modules/gui/pymod/CMakeFiles/ost_gui_dng_pymod.dir/build
[  0%] Built target ost_geom_pymod
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_context_menu.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.py
[  0%] Built target ost_db_pymod
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/__init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/critical_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/critical_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./tmtools.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_select_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_menubar.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.py
[  0%] Built target ost_gfx_pymod
make  -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_img_alg_pymod
make  -f modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build.make modules/img/base/pymod/CMakeFiles/ost_img_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/ost_io_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/termuse.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./dssp.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/combo_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.py
make  -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/delete_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/delete_icon.png
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/superpositiondialog.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_spacenav.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/DependInfo.cmake "--color="
make  -f modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build.make modules/info/pymod/CMakeFiles/ost_info_pymod.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build.make modules/io/pymod/CMakeFiles/ost_io_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./__init__.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/init.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/cpk_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./clustalw.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/distance_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/distance_icon.png
make  -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/DependInfo.cmake "--color="
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./init_splash.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color="
[  0%] Built target gui_images
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/menu.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.py
make  -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/find_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/find_icon.png
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/DependInfo.cmake "--color="
make  -f modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build.make modules/mol/base/pymod/CMakeFiles/ost_mol_pymod.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./utils.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build
[  0%] Built target ost_img_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh
make  -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./remote.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/information_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/information_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/custom_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./trajectory_viewer.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.py
[  0%] Built target ost_info_pymod
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build.make modules/mol/alg/pymod/CMakeFiles/ost_mol_alg_pymod.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/./repository.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./naccess.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./__init__.py
make  -f modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build.make modules/mol/mm/pymod/CMakeFiles/ost_mol_mm_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./__init__.py
make  -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/depend
[  0%] Built target ost_gui_dng_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/DependInfo.cmake "--color="
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/map_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/map_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./views.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./views.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build.make modules/seq/base/pymod/CMakeFiles/ost_seq_pymod.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/./antechamber.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./antechamber.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_editor_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./helpwidget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_mol_pymod
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./superpose.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.py
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build.make modules/seq/alg/pymod/CMakeFiles/ost_seq_alg_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./__init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_io_pymod
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/menubar_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/menubar_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits2.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./qsscoring.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscoring.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./mat.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./trajectory_analysis.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./trajectory_analysis.py
[  0%] Built target ost_seq_pymod
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./table.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.py
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./hhblits3.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_mol_mm_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color="
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/rigid_body_manipulator_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/rigid_body_manipulator_icon.png
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./blast.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./structure_analysis.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./structure_analysis.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/actions /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/actions /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./renumber.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_preset_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.py
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh
[  0%] Built target subst_ost_startup.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./helix_kinks.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/selection_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/selection_icon.png
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./cadscore.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/./gosty_startup.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/hsc_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.py
[  0%] Built target subst_ost_config
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/./aaindex.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./hbond.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./kclust.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./lddt.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.py
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./settings.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/show_sidebar_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/show_sidebar_icon.png
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-ligand-structures /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-ligand-structures
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_preset_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.py
[  0%] Built target ost_gui_pymod
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex1 /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex1
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color="
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/depend
[  0%] Built target subst_dng
[  0%] Built target subst_ost
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./ialign.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color="
make  -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/site_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/site_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./qsscore.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/ost_base_pymod.dir/DependInfo.cmake "--color="
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-structures /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/init_inspector.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex2 /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex2
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./scoring.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/inspector_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build.make modules/base/pymod/CMakeFiles/ost_base_pymod.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/split_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/split_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./mmseqs2.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./settings.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/actions/ost-compare-structures-legacy /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost-compare-structures-legacy
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./chain_mapping.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./observer.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/./dockq.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/map_level_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh
[  0%] Built target actions
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./stereochemistry.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex3 /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/aaindex/aaindex3
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./stutil.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.py
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/warning_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/warning_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./dockq.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./version.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./table.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.py
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
[  0%] Built target ost_seq_alg_pymod
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./contact_score.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/remote.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./index.hh
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
[  0%] Built target ost_bindings_pymod
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/share && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/share/icons/refresh.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/gui/icons/refresh.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
[  0%] Built target ost_config_headers
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./table_selector.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./steep.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_info_handler.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./xmlrunner.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.py
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_list_model.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target scene_icons
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_base.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/./testutils.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
[  0%] Built target ost_bindings_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
[  0%] Built target ost_mol_mm_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_scrmsd.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color="
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./ligand_scoring_lddtpli.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E copy_if_different __init__.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/__init__.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./bb_lddt.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_mode_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_op.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
[  0%] Built target ost_base_pymod
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/./scoring_base.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring_base.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_observer_impl.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/stereo_data.json /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_data.json
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_selection_helper.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
[  0%] Built target ost_mol_alg_pymod
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/simple_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.py
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh
[  0%] Built target ost_db_headers
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/sline_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/toolbar_options_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/trace_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/tube_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.py
[  0%] Built target ost_seq_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/uniform_color_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/visibility_op.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
[  0%] Built target ost_info_headers
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh
[  0%] Built target ost_conop_headers
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/line_trace_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/wireframe_widget.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/wireframe_widget.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh
[  0%] Built target ost_config
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/query_editor.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/query_editor.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh
[  0%] Built target ost_gui_scene_pymod
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./paged_array.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
[  0%] Built target ost_base_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
[  0%] Built target ost_seq_alg_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
[  0%] Built target ost_geom_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat2.cc.o -MF CMakeFiles/ost_geom.dir/mat2.cc.o.d -o CMakeFiles/ost_geom.dir/mat2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/mat2.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat3.cc.o -MF CMakeFiles/ost_geom.dir/mat3.cc.o.d -o CMakeFiles/ost_geom.dir/mat3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/mat3.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/mat4.cc.o -MF CMakeFiles/ost_geom.dir/mat4.cc.o.d -o CMakeFiles/ost_geom.dir/mat4.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/mat4.cc
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vec3.cc.o -MF CMakeFiles/ost_geom.dir/vec3.cc.o.d -o CMakeFiles/ost_geom.dir/vec3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vec3.cc
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat2_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat2_op.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
[  0%] Built target ost_mol_alg_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat3_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat3_op.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/omf.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
[  0%] Built target ost_img_alg_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
[  0%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -MF CMakeFiles/ost_geom.dir/vecmat4_op.cc.o.d -o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/vecmat4_op.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
[  0%] Built target ost_img_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2.cc.o -MF CMakeFiles/ost_geom.dir/composite2.cc.o.d -o CMakeFiles/ost_geom.dir/composite2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite2.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh
[  1%] Built target ost_mol_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3.cc.o -MF CMakeFiles/ost_geom.dir/composite3.cc.o.d -o CMakeFiles/ost_geom.dir/composite3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite3.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite2_op.cc.o -MF CMakeFiles/ost_geom.dir/composite2_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite2_op.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/composite3_op.cc.o -MF CMakeFiles/ost_geom.dir/composite3_op.cc.o.d -o CMakeFiles/ost_geom.dir/composite3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite3_op.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
[  1%] Built target ost_gfx_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/quat.cc.o -MF CMakeFiles/ost_geom.dir/quat.cc.o.d -o CMakeFiles/ost_geom.dir/quat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/quat.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./omf.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/transform.cc.o -MF CMakeFiles/ost_geom.dir/transform.cc.o.d -o CMakeFiles/ost_geom.dir/transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/transform.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -MF CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o.d -o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/aligned_cuboid.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
/build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite3.cc: In member function 'geom::Quat geom::Rotation3::GetQuat() const':
/build/reproducible-path/openstructure-2.10.0/modules/geom/src/composite3.cc:218:27: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1
  218 | Quat Rotation3::GetQuat() const
      |                           ^~~~~
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
[  1%] Built target ost_io_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh
[  1%] Building CXX object modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/c++ -DOST_MODULE_OST_GEOM -Dost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/src/CMakeFiles/ost_geom.dir/point_cloud.cc.o -MF CMakeFiles/ost_geom.dir/point_cloud.cc.o.d -o CMakeFiles/ost_geom.dir/point_cloud.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/src/point_cloud.cc
/build/reproducible-path/openstructure-2.10.0/modules/geom/src/quat.cc: In function 'geom::Quat geom::{anonymous}::extract_from_rotmat(const geom::Mat3&)':
/build/reproducible-path/openstructure-2.10.0/modules/geom/src/quat.cc:185:41: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1
  185 | Quat extract_from_rotmat(const Mat3& rot)
      |                                         ^
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_gui_headers
[  1%] Linking CXX shared library ../../../stage/lib/libost_geom.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_geom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_geom.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_geom.so.2.10 -o ../../../stage/lib/libost_geom.so.2.10.0 CMakeFiles/ost_geom.dir/mat2.cc.o CMakeFiles/ost_geom.dir/mat3.cc.o CMakeFiles/ost_geom.dir/mat4.cc.o CMakeFiles/ost_geom.dir/vec3.cc.o CMakeFiles/ost_geom.dir/vecmat2_op.cc.o CMakeFiles/ost_geom.dir/vecmat3_op.cc.o CMakeFiles/ost_geom.dir/vecmat4_op.cc.o CMakeFiles/ost_geom.dir/composite2.cc.o CMakeFiles/ost_geom.dir/composite3.cc.o CMakeFiles/ost_geom.dir/composite2_op.cc.o CMakeFiles/ost_geom.dir/composite3_op.cc.o CMakeFiles/ost_geom.dir/quat.cc.o CMakeFiles/ost_geom.dir/transform.cc.o CMakeFiles/ost_geom.dir/aligned_cuboid.cc.o CMakeFiles/ost_geom.dir/point_cloud.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_geom.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10 ../../../stage/lib/libost_geom.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  1%] Built target ost_geom
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color="
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o
[  1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/generic_property.cc.o -MF CMakeFiles/ost_base.dir/generic_property.cc.o.d -o CMakeFiles/ost_base.dir/generic_property.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/generic_property.cc
[  1%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log.cc.o -MF CMakeFiles/ost_base.dir/log.cc.o.d -o CMakeFiles/ost_base.dir/log.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/log.cc
[  1%] Building CXX object modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/log_sink.cc.o -MF CMakeFiles/ost_base.dir/log_sink.cc.o.d -o CMakeFiles/ost_base.dir/log_sink.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/log_sink.cc
[  2%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec2.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec2.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vec2.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vecmat2_op.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/platform.cc.o -MF CMakeFiles/ost_base.dir/platform.cc.o.d -o CMakeFiles/ost_base.dir/platform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/platform.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vec3.cc.o -MF CMakeFiles/_ost_geom.dir/export_vec3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vec3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vec3.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/string_ref.cc.o -MF CMakeFiles/ost_base.dir/string_ref.cc.o.d -o CMakeFiles/ost_base.dir/string_ref.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/string_ref.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/message.cc.o -MF CMakeFiles/ost_base.dir/message.cc.o.d -o CMakeFiles/ost_base.dir/message.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/message.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_vecmat3_op.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DOST_MODULE_OST_BASE -Dost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/src/CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -MF CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o.d -o CMakeFiles/ost_base.dir/boost_filesystem_helper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/src/boost_filesystem_helper.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_impl.cc.o -MF CMakeFiles/ost_info.dir/info_impl.cc.o.d -o CMakeFiles/ost_info.dir/info_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_impl.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_composite3.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_composite2_op.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -MF CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o.d -o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_composite3_op.cc
[  5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_quat.cc.o -MF CMakeFiles/_ost_geom.dir/export_quat.cc.o.d -o CMakeFiles/_ost_geom.dir/export_quat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_quat.cc
[  5%] Building CXX object modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/c++ -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_geom_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/geom/pymod/CMakeFiles/_ost_geom.dir/export_transform.cc.o -MF CMakeFiles/_ost_geom.dir/export_transform.cc.o.d -o CMakeFiles/_ost_geom.dir/export_transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_transform.cc
[  5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_handle.cc.o -MF CMakeFiles/ost_info.dir/info_handle.cc.o.d -o CMakeFiles/ost_info.dir/info_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_handle.cc
[  5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_group.cc.o -MF CMakeFiles/ost_info.dir/info_group.cc.o.d -o CMakeFiles/ost_info.dir/info_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_group.cc
In file included from /usr/include/boost/preprocessor/iteration/detail/iter/limits/forward1_256.hpp:14,
                 from /usr/include/boost/preprocessor/iteration/detail/iter/forward1.hpp:1343,
                 from /usr/include/boost/python/detail/invoke.hpp:61,
                 from /usr/include/boost/python/detail/caller.hpp:16,
                 from /usr/include/boost/python/object/function_handle.hpp:8,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:19,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_composite3.cc:19:
/usr/include/boost/python/detail/invoke.hpp: In function 'PyObject* boost::python::detail::invoke(invoke_tag_<false, true>, const RC&, F&, TC&) [with RC = boost::python::to_python_value<const geom::Quat&>; F = geom::Quat (geom::Rotation3::*)() const; TC = boost::python::arg_from_python<geom::Rotation3&>]':
/usr/include/boost/python/detail/invoke.hpp:86:25: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1
   86 |     return rc( (tc().*f)(BOOST_PP_ENUM_BINARY_PARAMS_Z(1, N, ac, () BOOST_PP_INTERCEPT)) );
      |                ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_item.cc.o -MF CMakeFiles/ost_info.dir/info_item.cc.o.d -o CMakeFiles/ost_info.dir/info_item.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_item.cc
[  5%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_path.cc.o -MF CMakeFiles/ost_info.dir/info_path.cc.o.d -o CMakeFiles/ost_info.dir/info_path.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_path.cc
/build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_quat.cc: In function 'geom::Quat normalize(const geom::Quat&)':
/build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/export_quat.cc:24:42: note: parameter passing for argument of type 'geom::Quat' when C++17 is enabled changed to match C++14 in GCC 10.1
   24 | geom::Quat normalize (const geom::Quat& q)
      |                                          ^
[  6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_set.cc.o
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[  6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_visitor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_visitor.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -MF CMakeFiles/ost_info.dir/geom_info_conversion.cc.o.d -o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/geom_info_conversion.cc
[  6%] Building CXX object modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_INFO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/src/CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -MF CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o.d -o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/src/info_verbose_visitor.cc
[  6%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/geom/_ost_geom.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_geom.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_geom.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/geom/_ost_geom.so CMakeFiles/_ost_geom.dir/export_vec2.cc.o CMakeFiles/_ost_geom.dir/export_vecmat2_op.cc.o CMakeFiles/_ost_geom.dir/export_vec3.cc.o CMakeFiles/_ost_geom.dir/export_vecmat3_op.cc.o CMakeFiles/_ost_geom.dir/export_vec4.cc.o CMakeFiles/_ost_geom.dir/export_vecmat4_op.cc.o CMakeFiles/_ost_geom.dir/wrap_geom.cc.o CMakeFiles/_ost_geom.dir/export_mat2.cc.o CMakeFiles/_ost_geom.dir/export_mat3.cc.o CMakeFiles/_ost_geom.dir/export_mat4.cc.o CMakeFiles/_ost_geom.dir/export_composite2.cc.o CMakeFiles/_ost_geom.dir/export_composite3.cc.o CMakeFiles/_ost_geom.dir/export_composite2_op.cc.o CMakeFiles/_ost_geom.dir/export_composite3_op.cc.o CMakeFiles/_ost_geom.dir/export_quat.cc.o CMakeFiles/_ost_geom.dir/export_transform.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/geom/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/geom/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake "--color="
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[  6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/wrap_base.cc.o -MF CMakeFiles/_ost_base.dir/wrap_base.cc.o.d -o CMakeFiles/_ost_base.dir/wrap_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/wrap_base.cc
[  6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o
[  6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_logger.cc.o -MF CMakeFiles/_ost_base.dir/export_logger.cc.o.d -o CMakeFiles/_ost_base.dir/export_logger.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_logger.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_range.cc.o -MF CMakeFiles/_ost_base.dir/export_range.cc.o.d -o CMakeFiles/_ost_base.dir/export_range.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_range.cc
[  6%] Building CXX object modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -D_ost_base_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/pymod/CMakeFiles/_ost_base.dir/export_units.cc.o -MF CMakeFiles/_ost_base.dir/export_units.cc.o.d -o CMakeFiles/_ost_base.dir/export_units.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/pymod/export_units.cc
[  6%] Linking CXX shared library ../../../stage/lib/libost_info.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_info.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_info.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_info.so.2.10 -o ../../../stage/lib/libost_info.so.2.10.0 CMakeFiles/ost_info.dir/info_impl.cc.o CMakeFiles/ost_info.dir/info_handle.cc.o CMakeFiles/ost_info.dir/info_group.cc.o CMakeFiles/ost_info.dir/info_item.cc.o CMakeFiles/ost_info.dir/info_path.cc.o CMakeFiles/ost_info.dir/info_set.cc.o CMakeFiles/ost_info.dir/info_visitor.cc.o CMakeFiles/ost_info.dir/geom_info_conversion.cc.o CMakeFiles/ost_info.dir/info_verbose_visitor.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_info.so.2.10 ../../../stage/lib/libost_info.so
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_base.cc.o -MF CMakeFiles/ost_mol.dir/atom_base.cc.o.d -o CMakeFiles/ost_mol.dir/atom_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/atom_base.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_handle.cc.o -MF CMakeFiles/ost_mol.dir/atom_handle.cc.o.d -o CMakeFiles/ost_mol.dir/atom_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/atom_handle.cc
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/atom_view.cc.o -MF CMakeFiles/ost_mol.dir/atom_view.cc.o.d -o CMakeFiles/ost_mol.dir/atom_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/atom_view.cc
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/composite_mask.cc.o -MF CMakeFiles/ost_img.dir/composite_mask.cc.o.d -o CMakeFiles/ost_img.dir/composite_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/composite_mask.cc
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o
[  7%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o
[  7%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_base.cc.o -MF CMakeFiles/ost_mol.dir/chain_base.cc.o.d -o CMakeFiles/ost_mol.dir/chain_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_base.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/circle_mask.cc.o -MF CMakeFiles/ost_img.dir/circle_mask.cc.o.d -o CMakeFiles/ost_img.dir/circle_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/circle_mask.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bond_handle.cc.o -MF CMakeFiles/ost_mol.dir/bond_handle.cc.o.d -o CMakeFiles/ost_mol.dir/bond_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/bond_handle.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_algorithm.cc.o -MF CMakeFiles/ost_img.dir/data_algorithm.cc.o.d -o CMakeFiles/ost_img.dir/data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data_algorithm.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data_observer.cc.o -MF CMakeFiles/ost_img.dir/data_observer.cc.o.d -o CMakeFiles/ost_img.dir/data_observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data_observer.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/data.cc.o -MF CMakeFiles/ost_img.dir/data.cc.o.d -o CMakeFiles/ost_img.dir/data.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/data.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_iterator.cc.o -MF CMakeFiles/ost_img.dir/extent_iterator.cc.o.d -o CMakeFiles/ost_img.dir/extent_iterator.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/extent_iterator.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent_mask.cc.o -MF CMakeFiles/ost_img.dir/extent_mask.cc.o.d -o CMakeFiles/ost_img.dir/extent_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/extent_mask.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/extent.cc.o -MF CMakeFiles/ost_img.dir/extent.cc.o.d -o CMakeFiles/ost_img.dir/extent.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/extent.cc
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_factory.cc.o -MF CMakeFiles/ost_img.dir/image_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_factory.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_factory.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_handle.cc.o -MF CMakeFiles/ost_mol.dir/chain_handle.cc.o.d -o CMakeFiles/ost_mol.dir/chain_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_handle.cc
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_view.cc.o -MF CMakeFiles/ost_mol.dir/chain_view.cc.o.d -o CMakeFiles/ost_mol.dir/chain_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_view.cc
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/chain_type.cc.o -MF CMakeFiles/ost_mol.dir/chain_type.cc.o.d -o CMakeFiles/ost_mol.dir/chain_type.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/chain_type.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_handle.cc.o -MF CMakeFiles/ost_img.dir/image_handle.cc.o.d -o CMakeFiles/ost_img.dir/image_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_handle.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_impl.cc.o -MF CMakeFiles/ost_img.dir/image_impl.cc.o.d -o CMakeFiles/ost_img.dir/image_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_impl.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_list.cc.o -MF CMakeFiles/ost_img.dir/image_list.cc.o.d -o CMakeFiles/ost_img.dir/image_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_list.cc
[  8%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/inverted_mask.cc.o -MF CMakeFiles/ost_img.dir/inverted_mask.cc.o.d -o CMakeFiles/ost_img.dir/inverted_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/inverted_mask.cc
[  8%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_frame.cc.o -MF CMakeFiles/ost_mol.dir/coord_frame.cc.o.d -o CMakeFiles/ost_mol.dir/coord_frame.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_frame.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/map.cc.o -MF CMakeFiles/ost_img.dir/map.cc.o.d -o CMakeFiles/ost_img.dir/map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/map.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_base.cc.o -MF CMakeFiles/ost_img.dir/mask_base.cc.o.d -o CMakeFiles/ost_img.dir/mask_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_base.cc
[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_group.cc.o -MF CMakeFiles/ost_mol.dir/coord_group.cc.o.d -o CMakeFiles/ost_mol.dir/coord_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_group.cc
[ 10%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/editor_base.cc.o -MF CMakeFiles/ost_mol.dir/editor_base.cc.o.d -o CMakeFiles/ost_mol.dir/editor_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/editor_base.cc
[ 10%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_op.cc.o -MF CMakeFiles/ost_img.dir/mask_op.cc.o.d -o CMakeFiles/ost_img.dir/mask_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_op.cc
[ 11%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_base.cc.o -MF CMakeFiles/ost_mol.dir/entity_base.cc.o.d -o CMakeFiles/ost_mol.dir/entity_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_base.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask.cc.o -MF CMakeFiles/ost_img.dir/mask.cc.o.d -o CMakeFiles/ost_img.dir/mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/observable.cc.o -MF CMakeFiles/ost_img.dir/observable.cc.o.d -o CMakeFiles/ost_img.dir/observable.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/observable.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/paste_impl.cc.o -MF CMakeFiles/ost_img.dir/paste_impl.cc.o.d -o CMakeFiles/ost_img.dir/paste_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/paste_impl.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/peak.cc.o -MF CMakeFiles/ost_img.dir/peak.cc.o.d -o CMakeFiles/ost_img.dir/peak.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/peak.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/phase.cc.o -MF CMakeFiles/ost_img.dir/phase.cc.o.d -o CMakeFiles/ost_img.dir/phase.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/phase.cc
/build/reproducible-path/openstructure-2.10.0/modules/img/base/src/phase.cc: In member function 'const ost::img::Phase ost::img::Phase::operator+=(const ost::img::Phase&)':
/build/reproducible-path/openstructure-2.10.0/modules/img/base/src/phase.cc:49:47: note: parameter passing for argument of type 'ost::img::Phase' when C++17 is enabled changed to match C++14 in GCC 10.1
   49 | const Phase Phase::operator+=(const Phase& rhs)
      |                                               ^
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/physical_units.cc.o -MF CMakeFiles/ost_img.dir/physical_units.cc.o.d -o CMakeFiles/ost_img.dir/physical_units.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/physical_units.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/pixel_sampling.cc.o -MF CMakeFiles/ost_img.dir/pixel_sampling.cc.o.d -o CMakeFiles/ost_img.dir/pixel_sampling.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/pixel_sampling.cc
[ 11%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point_list.cc.o -MF CMakeFiles/ost_img.dir/point_list.cc.o.d -o CMakeFiles/ost_img.dir/point_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/point_list.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/point.cc.o -MF CMakeFiles/ost_img.dir/point.cc.o.d -o CMakeFiles/ost_img.dir/point.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/point.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_handle.cc.o -MF CMakeFiles/ost_mol.dir/entity_handle.cc.o.d -o CMakeFiles/ost_mol.dir/entity_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_handle.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_observer.cc.o -MF CMakeFiles/ost_mol.dir/entity_observer.cc.o.d -o CMakeFiles/ost_mol.dir/entity_observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_observer.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/polygon_mask.cc.o -MF CMakeFiles/ost_img.dir/polygon_mask.cc.o.d -o CMakeFiles/ost_img.dir/polygon_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/polygon_mask.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/progress.cc.o -MF CMakeFiles/ost_img.dir/progress.cc.o.d -o CMakeFiles/ost_img.dir/progress.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/progress.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -MF CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o.d -o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_property_mapper.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_view.cc.o -MF CMakeFiles/ost_mol.dir/entity_view.cc.o.d -o CMakeFiles/ost_mol.dir/entity_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_view.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/entity_visitor.cc.o -MF CMakeFiles/ost_mol.dir/entity_visitor.cc.o.d -o CMakeFiles/ost_mol.dir/entity_visitor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_visitor.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/ics_editor.cc.o -MF CMakeFiles/ost_mol.dir/ics_editor.cc.o.d -o CMakeFiles/ost_mol.dir/ics_editor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/ics_editor.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/size.cc.o -MF CMakeFiles/ost_img.dir/size.cc.o.d -o CMakeFiles/ost_img.dir/size.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/size.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/spherical_mask.cc.o -MF CMakeFiles/ost_img.dir/spherical_mask.cc.o.d -o CMakeFiles/ost_img.dir/spherical_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/spherical_mask.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/mask_info_convert.cc.o -MF CMakeFiles/ost_img.dir/mask_info_convert.cc.o.d -o CMakeFiles/ost_img.dir/mask_info_convert.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/mask_info_convert.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_factory.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/index.cc.o -MF CMakeFiles/ost_img.dir/image_state/index.cc.o.d -o CMakeFiles/ost_img.dir/image_state/index.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/not_connected_error.cc.o -MF CMakeFiles/ost_mol.dir/not_connected_error.cc.o.d -o CMakeFiles/ost_mol.dir/not_connected_error.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/not_connected_error.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -MF CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o.d -o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base.cc
[ 12%] Building CXX object modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/src/CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -MF CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o.d -o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/property_id.cc.o -MF CMakeFiles/ost_mol.dir/property_id.cc.o.d -o CMakeFiles/ost_mol.dir/property_id.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/property_id.cc
/build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_view.cc: In member function 'std::pair<float, float> ost::mol::EntityView::GetMinMax(const String&, ost::mol::Prop::Level) const':
/build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/entity_view.cc:662:62: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
  662 |                                            Prop::Level hint) const
      |                                                              ^~~~~
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query.cc.o -MF CMakeFiles/ost_mol.dir/query.cc.o.d -o CMakeFiles/ost_mol.dir/query.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query.cc
[ 12%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_error.cc.o -MF CMakeFiles/ost_mol.dir/query_error.cc.o.d -o CMakeFiles/ost_mol.dir/query_error.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query_error.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_state.cc.o -MF CMakeFiles/ost_mol.dir/query_state.cc.o.d -o CMakeFiles/ost_mol.dir/query_state.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query_state.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_base.cc.o -MF CMakeFiles/ost_mol.dir/residue_base.cc.o.d -o CMakeFiles/ost_mol.dir/residue_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_base.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_handle.cc.o -MF CMakeFiles/ost_mol.dir/residue_handle.cc.o.d -o CMakeFiles/ost_mol.dir/residue_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_handle.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/residue_view.cc.o -MF CMakeFiles/ost_mol.dir/residue_view.cc.o.d -o CMakeFiles/ost_mol.dir/residue_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/residue_view.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_builder.cc.o -MF CMakeFiles/ost_mol.dir/surface_builder.cc.o.d -o CMakeFiles/ost_mol.dir/surface_builder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/surface_builder.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/surface_handle.cc.o -MF CMakeFiles/ost_mol.dir/surface_handle.cc.o.d -o CMakeFiles/ost_mol.dir/surface_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/surface_handle.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -MF CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/transfer_connectivity.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/torsion_handle.cc.o -MF CMakeFiles/ost_mol.dir/torsion_handle.cc.o.d -o CMakeFiles/ost_mol.dir/torsion_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/torsion_handle.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -MF CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o.d -o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/query_view_wrapper.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/view_op.cc.o -MF CMakeFiles/ost_mol.dir/view_op.cc.o.d -o CMakeFiles/ost_mol.dir/view_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/view_op.cc
[ 13%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/coord_source.cc.o -MF CMakeFiles/ost_mol.dir/coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/coord_source.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/coord_source.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -MF CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o.d -o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/in_mem_coord_source.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/bounding_box.cc.o -MF CMakeFiles/ost_mol.dir/bounding_box.cc.o.d -o CMakeFiles/ost_mol.dir/bounding_box.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/bounding_box.cc
[ 15%] Linking CXX shared library ../../../../stage/lib/libost_img.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img.dir/link.txt --verbose=1
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/xcs_editor.cc.o -MF CMakeFiles/ost_mol.dir/xcs_editor.cc.o.d -o CMakeFiles/ost_mol.dir/xcs_editor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/xcs_editor.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl.cc
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img.so.2.10 -o ../../../../stage/lib/libost_img.so.2.10.0 CMakeFiles/ost_img.dir/circle_mask.cc.o CMakeFiles/ost_img.dir/composite_mask.cc.o CMakeFiles/ost_img.dir/data_algorithm.cc.o CMakeFiles/ost_img.dir/data_observer.cc.o CMakeFiles/ost_img.dir/data.cc.o CMakeFiles/ost_img.dir/extent_iterator.cc.o CMakeFiles/ost_img.dir/extent_mask.cc.o CMakeFiles/ost_img.dir/extent.cc.o CMakeFiles/ost_img.dir/image_factory.cc.o CMakeFiles/ost_img.dir/image_handle.cc.o CMakeFiles/ost_img.dir/image_impl.cc.o CMakeFiles/ost_img.dir/image_list.cc.o CMakeFiles/ost_img.dir/inverted_mask.cc.o CMakeFiles/ost_img.dir/map.cc.o CMakeFiles/ost_img.dir/mask_base.cc.o CMakeFiles/ost_img.dir/mask_op.cc.o CMakeFiles/ost_img.dir/mask.cc.o CMakeFiles/ost_img.dir/observable.cc.o CMakeFiles/ost_img.dir/paste_impl.cc.o CMakeFiles/ost_img.dir/peak.cc.o CMakeFiles/ost_img.dir/phase.cc.o CMakeFiles/ost_img.dir/physical_units.cc.o CMakeFiles/ost_img.dir/pixel_sampling.cc.o CMakeFiles/ost_img.dir/point_list.cc.o CMakeFiles/ost_img.dir/point.cc.o CMakeFiles/ost_img.dir/polygon_mask.cc.o CMakeFiles/ost_img.dir/progress.cc.o CMakeFiles/ost_img.dir/size.cc.o CMakeFiles/ost_img.dir/spherical_mask.cc.o CMakeFiles/ost_img.dir/mask_info_convert.cc.o CMakeFiles/ost_img.dir/image_state/image_state_factory.cc.o CMakeFiles/ost_img.dir/image_state/index.cc.o CMakeFiles/ost_img.dir/image_state/image_state_base.cc.o CMakeFiles/ost_img.dir/raster_image/raster_image.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10 ../../../../stage/lib/libost_img.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 15%] Built target ost_img
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake "--color="
[ 15%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -MF CMakeFiles/ost_mol.dir/impl/dihedral.cc.o.d -o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/dihedral.cc
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -MF CMakeFiles/ost_img_alg.dir/anisotropic.cc.o.d -o CMakeFiles/ost_img_alg.dir/anisotropic.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/anisotropic.cc
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl.cc
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl.cc
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_ast.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast.cc
[ 16%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/query_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl.cc
[ 16%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/auto_correlate.cc
[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl.cc
[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl.cc
[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -MF CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o.d -o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl.cc
[ 17%] Building CXX object modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_MOL -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/src/CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -MF CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o.d -o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_prop.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/convolute.cc.o -MF CMakeFiles/ost_img_alg.dir/convolute.cc.o.d -o CMakeFiles/ost_img_alg.dir/convolute.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/convolute.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/correlate.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -MF CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o.d -o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/cross_correlate.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/density_slice.cc.o -MF CMakeFiles/ost_img_alg.dir/density_slice.cc.o.d -o CMakeFiles/ost_img_alg.dir/density_slice.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/density_slice.cc
[ 17%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_base.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_base.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/_ost_base.so CMakeFiles/_ost_base.dir/wrap_base.cc.o CMakeFiles/_ost_base.dir/export_logger.cc.o CMakeFiles/_ost_base.dir/export_range.cc.o CMakeFiles/_ost_base.dir/export_units.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/settings.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./settings.pyc\",\"settings.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/stutil.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./stutil.pyc\",\"stutil.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/table.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table.pyc\",\"table.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/table_selector.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./table_selector.pyc\",\"table_selector.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/xmlrunner.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./xmlrunner.pyc\",\"xmlrunner.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/base/pymod/testutils.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/./testutils.pyc\",\"testutils.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 17%] Built target _ost_base
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 17%] Building CXX object modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_info_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/info/pymod/CMakeFiles/_ost_info.dir/wrap_info.cc.o -MF CMakeFiles/_ost_info.dir/wrap_info.cc.o.d -o CMakeFiles/_ost_info.dir/wrap_info.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/info/pymod/wrap_info.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/dft.cc.o -MF CMakeFiles/ost_img_alg.dir/dft.cc.o.d -o CMakeFiles/ost_img_alg.dir/dft.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/dft.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fft.cc.o -MF CMakeFiles/ost_img_alg.dir/fft.cc.o.d -o CMakeFiles/ost_img_alg.dir/fft.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fft.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -MF CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o.d -o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fourier_filters.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/gaussian.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/gaussian_gradient_magnitude.cc
[ 17%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -MF CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o.d -o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/gaussian_laplacian.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -MF CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o.d -o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/highest_peak_search_3d.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/histogram.cc.o -MF CMakeFiles/ost_img_alg.dir/histogram.cc.o.d -o CMakeFiles/ost_img_alg.dir/histogram.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/histogram.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -MF CMakeFiles/ost_img_alg.dir/line_iterator.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/line_iterator.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/local_sigma_threshold.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/mask_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/mask_image.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/normalizer.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -MF CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o.d -o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/normalizer_factory.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_linear.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/norm_linear.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_log.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_log.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_log.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/norm_log.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/norm_od.cc.o -MF CMakeFiles/ost_img_alg.dir/norm_od.cc.o.d -o CMakeFiles/ost_img_alg.dir/norm_od.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/norm_od.cc
[ 18%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -MF CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/power_spectrum.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/randomize.cc.o -MF CMakeFiles/ost_img_alg.dir/randomize.cc.o.d -o CMakeFiles/ost_img_alg.dir/randomize.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/randomize.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -MF CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o.d -o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/smooth_mask_image.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat.cc.o -MF CMakeFiles/ost_img_alg.dir/stat.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/stat.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -MF CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o.d -o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/stat_min_max.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_transform.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/alg_transform.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/alg_mirror.cc
[ 20%] Linking CXX shared library ../../../../stage/lib/libost_mol.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol.dir/link.txt --verbose=1
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/alg_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/alg_shift.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/threshold.cc.o -MF CMakeFiles/ost_img_alg.dir/threshold.cc.o.d -o CMakeFiles/ost_img_alg.dir/threshold.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/threshold.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -MF CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o.d -o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/discrete_shrink.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -MF CMakeFiles/ost_img_alg.dir/transformation_base.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/transformation_base.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol.so.2.10 -o ../../../../stage/lib/libost_mol.so.2.10.0 CMakeFiles/ost_mol.dir/atom_base.cc.o CMakeFiles/ost_mol.dir/atom_handle.cc.o CMakeFiles/ost_mol.dir/atom_view.cc.o CMakeFiles/ost_mol.dir/bond_handle.cc.o CMakeFiles/ost_mol.dir/chain_base.cc.o CMakeFiles/ost_mol.dir/chain_handle.cc.o CMakeFiles/ost_mol.dir/chain_view.cc.o CMakeFiles/ost_mol.dir/chain_type.cc.o CMakeFiles/ost_mol.dir/coord_frame.cc.o CMakeFiles/ost_mol.dir/coord_group.cc.o CMakeFiles/ost_mol.dir/editor_base.cc.o CMakeFiles/ost_mol.dir/entity_base.cc.o CMakeFiles/ost_mol.dir/entity_handle.cc.o CMakeFiles/ost_mol.dir/entity_observer.cc.o CMakeFiles/ost_mol.dir/entity_property_mapper.cc.o CMakeFiles/ost_mol.dir/entity_view.cc.o CMakeFiles/ost_mol.dir/entity_visitor.cc.o CMakeFiles/ost_mol.dir/ics_editor.cc.o CMakeFiles/ost_mol.dir/not_connected_error.cc.o CMakeFiles/ost_mol.dir/property_id.cc.o CMakeFiles/ost_mol.dir/query.cc.o CMakeFiles/ost_mol.dir/query_error.cc.o CMakeFiles/ost_mol.dir/query_state.cc.o CMakeFiles/ost_mol.dir/residue_base.cc.o CMakeFiles/ost_mol.dir/residue_handle.cc.o CMakeFiles/ost_mol.dir/residue_view.cc.o CMakeFiles/ost_mol.dir/surface_builder.cc.o CMakeFiles/ost_mol.dir/surface_handle.cc.o CMakeFiles/ost_mol.dir/transfer_connectivity.cc.o CMakeFiles/ost_mol.dir/torsion_handle.cc.o CMakeFiles/ost_mol.dir/query_view_wrapper.cc.o CMakeFiles/ost_mol.dir/view_op.cc.o CMakeFiles/ost_mol.dir/coord_source.cc.o CMakeFiles/ost_mol.dir/in_mem_coord_source.cc.o CMakeFiles/ost_mol.dir/bounding_box.cc.o CMakeFiles/ost_mol.dir/xcs_editor.cc.o CMakeFiles/ost_mol.dir/impl/atom_impl.cc.o CMakeFiles/ost_mol.dir/impl/chain_impl.cc.o CMakeFiles/ost_mol.dir/impl/connector_impl.cc.o CMakeFiles/ost_mol.dir/impl/dihedral.cc.o CMakeFiles/ost_mol.dir/impl/entity_impl.cc.o CMakeFiles/ost_mol.dir/impl/fragment_impl.cc.o CMakeFiles/ost_mol.dir/impl/query_ast.cc.o CMakeFiles/ost_mol.dir/impl/query_impl.cc.o CMakeFiles/ost_mol.dir/impl/residue_impl.cc.o CMakeFiles/ost_mol.dir/impl/surface_impl.cc.o CMakeFiles/ost_mol.dir/impl/torsion_impl.cc.o CMakeFiles/ost_mol.dir/impl/atom_prop.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10 ../../../../stage/lib/libost_mol.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 20%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl.cc
[ 20%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/transformations.cc.o -MF CMakeFiles/ost_img_alg.dir/transformations.cc.o.d -o CMakeFiles/ost_img_alg.dir/transformations.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/transformations.cc
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -MF CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o.d -o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/fractional_shift.cc
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/polar.cc.o -MF CMakeFiles/ost_img_alg.dir/polar.cc.o.d -o CMakeFiles/ost_img_alg.dir/polar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/polar.cc
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -MF CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o.d -o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/rscrosscorr.cc
[ 21%] Building CXX object modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_IMG_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/src/CMakeFiles/ost_img_alg.dir/line_average.cc.o -MF CMakeFiles/ost_img_alg.dir/line_average.cc.o.d -o CMakeFiles/ost_img_alg.dir/line_average.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/line_average.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -MF CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o.d -o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_handle.cc.o -MF CMakeFiles/ost_seq.dir/sequence_handle.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_handle.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_region.cc.o -MF CMakeFiles/ost_seq.dir/aligned_region.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_region.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/aligned_region.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/aligned_column.cc.o -MF CMakeFiles/ost_seq.dir/aligned_column.cc.o.d -o CMakeFiles/ost_seq.dir/aligned_column.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/aligned_column.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_list.cc.o -MF CMakeFiles/ost_seq.dir/sequence_list.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_list.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/alignment_handle.cc.o -MF CMakeFiles/ost_seq.dir/alignment_handle.cc.o.d -o CMakeFiles/ost_seq.dir/alignment_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/alignment_handle.cc
[ 21%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/sequence_op.cc.o -MF CMakeFiles/ost_seq.dir/sequence_op.cc.o.d -o CMakeFiles/ost_seq.dir/sequence_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/sequence_op.cc
[ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -MF CMakeFiles/ost_seq.dir/views_from_sequences.cc.o.d -o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/views_from_sequences.cc
[ 22%] Building CXX object modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/src/CMakeFiles/ost_seq.dir/profile_handle.cc.o -MF CMakeFiles/ost_seq.dir/profile_handle.cc.o.d -o CMakeFiles/ost_seq.dir/profile_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/profile_handle.cc
[ 22%] Linking CXX shared library ../../../../stage/lib/libost_img_alg.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_img_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_img_alg.so.2.10 -o ../../../../stage/lib/libost_img_alg.so.2.10.0 CMakeFiles/ost_img_alg.dir/anisotropic.cc.o CMakeFiles/ost_img_alg.dir/auto_correlate.cc.o CMakeFiles/ost_img_alg.dir/convolute.cc.o CMakeFiles/ost_img_alg.dir/correlate.cc.o CMakeFiles/ost_img_alg.dir/cross_correlate.cc.o CMakeFiles/ost_img_alg.dir/density_slice.cc.o CMakeFiles/ost_img_alg.dir/dft.cc.o CMakeFiles/ost_img_alg.dir/fft.cc.o CMakeFiles/ost_img_alg.dir/fourier_filters.cc.o CMakeFiles/ost_img_alg.dir/gaussian.cc.o CMakeFiles/ost_img_alg.dir/gaussian_gradient_magnitude.cc.o CMakeFiles/ost_img_alg.dir/gaussian_laplacian.cc.o CMakeFiles/ost_img_alg.dir/highest_peak_search_3d.cc.o CMakeFiles/ost_img_alg.dir/histogram.cc.o CMakeFiles/ost_img_alg.dir/line_iterator.cc.o CMakeFiles/ost_img_alg.dir/local_sigma_threshold.cc.o CMakeFiles/ost_img_alg.dir/mask_image.cc.o CMakeFiles/ost_img_alg.dir/normalizer.cc.o CMakeFiles/ost_img_alg.dir/normalizer_factory.cc.o CMakeFiles/ost_img_alg.dir/norm_linear.cc.o CMakeFiles/ost_img_alg.dir/norm_log.cc.o CMakeFiles/ost_img_alg.dir/norm_od.cc.o CMakeFiles/ost_img_alg.dir/power_spectrum.cc.o CMakeFiles/ost_img_alg.dir/randomize.cc.o CMakeFiles/ost_img_alg.dir/smooth_mask_image.cc.o CMakeFiles/ost_img_alg.dir/stat.cc.o CMakeFiles/ost_img_alg.dir/stat_min_max.cc.o CMakeFiles/ost_img_alg.dir/alg_transform.cc.o CMakeFiles/ost_img_alg.dir/alg_mirror.cc.o CMakeFiles/ost_img_alg.dir/alg_shift.cc.o CMakeFiles/ost_img_alg.dir/threshold.cc.o CMakeFiles/ost_img_alg.dir/discrete_shrink.cc.o CMakeFiles/ost_img_alg.dir/transformation_base.cc.o CMakeFiles/ost_img_alg.dir/transformations.cc.o CMakeFiles/ost_img_alg.dir/fractional_shift.cc.o CMakeFiles/ost_img_alg.dir/polar.cc.o CMakeFiles/ost_img_alg.dir/rscrosscorr.cc.o CMakeFiles/ost_img_alg.dir/line_average.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img_alg.so.2.10 ../../../../stage/lib/libost_img_alg.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 22%] Built target ost_img_alg
[ 22%] Linking CXX shared library ../../../../stage/lib/libost_seq.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_seq.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq.so.2.10 -o ../../../../stage/lib/libost_seq.so.2.10.0 CMakeFiles/ost_seq.dir/impl/sequence_impl.cc.o CMakeFiles/ost_seq.dir/impl/sequence_list_impl.cc.o CMakeFiles/ost_seq.dir/sequence_handle.cc.o CMakeFiles/ost_seq.dir/aligned_region.cc.o CMakeFiles/ost_seq.dir/aligned_column.cc.o CMakeFiles/ost_seq.dir/sequence_list.cc.o CMakeFiles/ost_seq.dir/alignment_handle.cc.o CMakeFiles/ost_seq.dir/sequence_op.cc.o CMakeFiles/ost_seq.dir/views_from_sequences.cc.o CMakeFiles/ost_seq.dir/profile_handle.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10 ../../../../stage/lib/libost_seq.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 22%] Built target ost_seq
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 22%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o
[ 22%] Building CXX object modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o
[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_BINDINGS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/src/CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -MF CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o.d -o CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -MF CMakeFiles/ost_db.dir/sqlite_wrap.cc.o.d -o CMakeFiles/ost_db.dir/sqlite_wrap.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/sqlite_wrap.cc
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/linear_indexer.cc.o -MF CMakeFiles/ost_db.dir/linear_indexer.cc.o.d -o CMakeFiles/ost_db.dir/linear_indexer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/linear_indexer.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -MF CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o.d -o CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/clip_alignment.cc
[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/binary_container.cc.o -MF CMakeFiles/ost_db.dir/binary_container.cc.o.d -o CMakeFiles/ost_db.dir/binary_container.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/binary_container.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/conservation.cc.o -MF CMakeFiles/ost_seq_alg.dir/conservation.cc.o.d -o CMakeFiles/ost_seq_alg.dir/conservation.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/contact_prediction_score.cc
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/contact_weight_matrix.cc
[ 23%] Building CXX object modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_DB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -DSQLITE_OMIT_LOAD_EXTENSION -Dost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/src/CMakeFiles/ost_db.dir/extract_data_helper.cc.o -MF CMakeFiles/ost_db.dir/extract_data_helper.cc.o.d -o CMakeFiles/ost_db.dir/extract_data_helper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/src/extract_data_helper.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -MF CMakeFiles/ost_seq_alg.dir/distance_map.cc.o.d -o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/distance_map.cc
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/entropy.cc.o -MF CMakeFiles/ost_seq_alg.dir/entropy.cc.o.d -o CMakeFiles/ost_seq_alg.dir/entropy.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/entropy.cc
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/global_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/global_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/global_align.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/global_align.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/param_set.h:7,
                 from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:6,
                 from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:20:
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h: In function 'void file2chainlist(std::vector<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:833:11: warning: unused variable 'b' [-Wunused-variable]
  833 |     int a,b;
      |           ^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h: In function 'void file2chainpairlist(std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&, const std::string&, const std::string&, const std::string&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:897:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  897 |             for (i=0;i<2;i++) line_vec[i].clear(); line_vec.clear();
      |             ^~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:897:52: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  897 |             for (i=0;i<2;i++) line_vec[i].clear(); line_vec.clear();
      |                                                    ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:901:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  901 |             for (i=0;i<line_vec.size();i++) line_vec[i].clear(); line_vec.clear();
      |             ^~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:901:66: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  901 |             for (i=0;i<line_vec.size();i++) line_vec[i].clear(); line_vec.clear();
      |                                                                  ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:907:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  907 |                 for (i=0;i<2;i++) line_vec[i].clear(); line_vec.clear();
      |                 ^~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:907:56: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  907 |                 for (i=0;i<2;i++) line_vec[i].clear(); line_vec.clear();
      |                                                        ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:912:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
  912 |                 for (i=0;i<line_vec.size();i++) line_vec[i].clear(); line_vec.clear();
      |                 ^~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:912:70: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
  912 |                 for (i=0;i<line_vec.size();i++) line_vec[i].clear(); line_vec.clear();
      |                                                                      ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:883:11: warning: unused variable 'b' [-Wunused-variable]
  883 |     int a,b;
      |           ^
In file included from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:7:
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NW.h: In function 'void NWDP_SE(bool**, double**, double**, double**, int, int, double, double, int*, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NW.h:275:9: warning: unused variable 'int_min' [-Wunused-variable]
  275 |     int int_min=L*(gap_open-1);
      |         ^~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NW.h:287:9: warning: unused variable 'k' [-Wunused-variable]
  287 |     int k=0;
      |         ^
In file included from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:9:
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h: In function 'int NWalign_main(const char*, const char*, int, int, std::string&, std::string&, int, int*, int, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:415:41: warning: array subscript has type 'char' [-Wchar-subscripts]
  415 |             else S[i][j]=BLOSUM[seqx[i-1]][seqy[j-1]];
      |                                 ~~~~~~~~^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:415:52: warning: array subscript has type 'char' [-Wchar-subscripts]
  415 |             else S[i][j]=BLOSUM[seqx[i-1]][seqy[j-1]];
      |                                            ~~~~~~~~^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h: In function 'void get_seqID(const std::string&, const std::string&, std::string&, double&, int&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:458:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  458 |     for (int i=0;i<seqxA.size();i++)
      |                  ~^~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector<std::__cxx11::basic_string<char> >&, char*, char*, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::vector<int>, std::vector<int>, int, int, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:715:14: warning: statement has no effect [-Wunused-value]
  715 |         for (i;i<xlen;i++)
      |              ^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:723:14: warning: statement has no effect [-Wunused-value]
  723 |         for (j;j<ylen;j++)
      |              ^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h: In function 'void make_sec(char*, double**, int, char*, std::string)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:878:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  878 |     for (i=0;i<A0_var.size();i++)
      |              ~^~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h: In function 'void output_pymol(std::string, std::string, std::string, double*, double (*)[3], int, int, int, int, const char*, const char*, const char*, const std::vector<std::__cxx11::basic_string<char> >&, const std::vector<std::__cxx11::basic_string<char> >&, std::string, std::string)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1604:38: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} [-Wsign-compare]
 1604 |                     if (atom_site_pos==_atom_site["Cartn_x"])
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1607:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} [-Wsign-compare]
 1607 |                     else if (atom_site_pos==_atom_site["Cartn_y"])
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1610:43: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'std::map<std::__cxx11::basic_string<char>, int>::mapped_type' {aka 'int'} [-Wsign-compare]
 1610 |                     else if (atom_site_pos==_atom_site["Cartn_z"])
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1653:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1653 |             for (i=1;i<chainID1.size();i++) if (chainID1[i]==',') break;
      |                      ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1655:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1655 |             for (i=1;i<chainID2.size();i++) if (chainID2[i]==',') break;
      |                      ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1677:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1677 |         for (i=0;i<strlen(seqM);i++)
      |                  ~^~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1716:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1716 |     for (int p=0;p<pml_list.size();p++)
      |                  ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h: In function 'void output_rasmol(std::string, std::string, std::string, double*, double (*)[3], int, int, int, int, const char*, const char*, const char*, const std::vector<std::__cxx11::basic_string<char> >&, const std::vector<std::__cxx11::basic_string<char> >&, std::string, std::string, int, int, double, int, double, double, double)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1855:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1855 |             for (i=1;i<chainID1.size();i++) if (chainID1[i]==',') break;
      |                      ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1857:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1857 |             for (i=1;i<chainID2.size();i++) if (chainID2[i]==',') break;
      |                      ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:1890:19: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare]
 1890 |         for (i=0;i<strlen(seqM);i++)
      |                  ~^~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:2162:28: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2162 |     if (!mm_opt) for (i=1;i<idx_vec.size();i++) buf<<"CONECT"
      |                           ~^~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:2372:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2372 |     for (i=1;i<idx_vec.size();i++) buf<<"CONECT"
      |              ~^~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h: In function 'int TMalign_main(double**, double**, const char*, const char*, const char*, const char*, double*, double (*)[3], double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, std::string&, std::string&, std::string&, double&, int&, double&, double&, double&, int&, int&, int, int, std::vector<std::__cxx11::basic_string<char> >, double, double, int, int, bool, bool, bool, int, double)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:3289:12: warning: variable 'Lnorm_d0' set but not used [-Wunused-but-set-variable]
 3289 |     double Lnorm_d0;
      |            ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h: In function 'int CPalign_main(double**, double**, const char*, const char*, const char*, const char*, double*, double (*)[3], double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, std::string&, std::string&, std::string&, double&, int&, double&, double&, double&, int&, int&, int, int, std::vector<std::__cxx11::basic_string<char> >, double, double, int, int, bool, bool, bool, int, double)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:3467:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 3467 |     for (i=0;i<seqxA_cp.size();i++)
      |              ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:3572:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 3572 |         for (i=0;i<seqxA_cp.size();i++)
      |                  ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h: In function 'bool output_cp(const std::string&, const std::string&, const std::string&, const std::string&, int, int&, int&, int&, int&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/TMalign.h:3606:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 3606 |     for (r=0;r<seqxA.size();r++)
      |              ~^~~~~~~~~~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:2,
                 from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:21:
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/se.h: In function 'int se_main(double**, double**, const char*, const char*, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, std::string&, std::string&, std::string&, double&, int&, double&, double&, double&, int&, int&, int, int, const std::vector<std::__cxx11::basic_string<char> >&, double, double, bool, bool, int, bool, int, int, int*, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/se.h:52:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
   52 |         for (int r=0;r<seqM.size();r++)
      |                      ~^~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/se.h:222:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::__cxx11::basic_string<char>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  222 |         for (int r=0;r<seqM.size();r++)
      |                      ~^~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/se.h:44:9: warning: unused variable 'i' [-Wunused-variable]
   44 |     int i,j;
      |         ^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'double homo_refined_greedy_search(double**, int*, int*, int, int, double**, double**, double, int, double**)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:440:12: warning: unused variable 'TMnow' [-Wunused-variable]
  440 |     double TMnow  =0;
      |            ^~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:441:12: warning: unused variable 'TMmax' [-Wunused-variable]
  441 |     double TMmax  =0;
      |            ^~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'void clear_full_PDB_lines(std::vector<std::vector<std::__cxx11::basic_string<char> > >, std::string)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:670:27: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::vector<std::__cxx11::basic_string<char> > >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  670 |     for (chain_i=0;chain_i<PDB_lines.size();chain_i++)
      |                    ~~~~~~~^~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:673:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  673 |         for (a=0;a<PDB_lines[chain_i].size();a++)
      |                  ~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:687:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
  687 |             for (a=0;a<PDB_lines[chain_i].size();a++)
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'void output_dock(const std::vector<std::__cxx11::basic_string<char> >&, int, int, int, std::string, int, double**, const std::string&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:1010:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1010 |             for (a=0;a<PDB_lines[chain_i].size();a++)
      |                      ~^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'int copy_chain_pair_data(const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&, double**, double**, char*, char*, char*, char*, int, int, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, int*, int*, std::vector<std::__cxx11::basic_string<char> >&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:1166:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1166 |     for (i=0;i<sequence.size();i++) sequence[i].clear();
      |              ~^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'void copy_chain_assign_data(int, int, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, int*, int*, double**, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, int*, int*, double**)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:1593:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 1593 |     for (i=0;i<sequence.size();i++) sequence[i].clear();
      |              ~^~~~~~~~~~~~~~~~
[ 23%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'int TMalign_dimer_main(double**, double**, const char*, const char*, const char*, const char*, double*, double (*)[3], double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, double&, std::string&, std::string&, std::string&, double&, int&, double&, double&, double&, int&, int&, int, int, bool**, std::vector<std::__cxx11::basic_string<char> >, double, double, int, int, bool, bool, bool, int, double)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:2542:12: warning: variable 'Lnorm_d0' set but not used [-Wunused-but-set-variable]
 2542 |     double Lnorm_d0;
      |            ^~~~~~~~
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -MF CMakeFiles/ost_seq_alg.dir/ins_del.cc.o.d -o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/ins_del.cc
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'void MMalign_dimer(double&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&, const std::vector<int>&, double**, double**, char*, char*, char*, char*, int, int, int, int, double**, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, std::vector<std::vector<std::__cxx11::basic_string<char> > >&, int*, int*, std::vector<std::__cxx11::basic_string<char> >&, double, bool)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:2694:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int>::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2694 |     for (c=0;c<xlen_dimer.size();c++)
      |              ~^~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'void writeTrimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<int>&, const std::string&, std::string)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:2993:15: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 2993 |     for (c=0;c<chainID_list.size();c++)
      |              ~^~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'void output_dock_rotation_matrix(const char*, const std::vector<std::__cxx11::basic_string<char> >&, const std::vector<std::__cxx11::basic_string<char> >&, double**, int*)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:3030:19: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<std::__cxx11::basic_string<char> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
 3030 |         for (i=0;i<xname_vec.size();i++)
      |                  ~^~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc: In function 'void ost::bindings::parse_chain_list_hacked(const std::vector<geom::Vec3List>&, const ost::seq::SequenceList&, const std::vector<bool>&, const std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, std::vector<int>&, std::vector<std::__cxx11::basic_string<char> >&, int, int, std::string, int, std::string, int, int, int&, int&, int, std::vector<std::__cxx11::basic_string<char> >&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:263:24: warning: possibly dangling reference to a temporary [-Wdangling-reference]
  263 |     const std::string& s = seq[i].GetString();
      |                        ^
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:263:44: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetString()'
  263 |     const std::string& s = seq[i].GetString();
      |                            ~~~~~~~~~~~~~~~~^~
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/local_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/local_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/local_align.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/local_align.cc
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/boost/assert/source_location.hpp:15,
                 from /usr/include/boost/exception/exception.hpp:9,
                 from /usr/include/boost/throw_exception.hpp:21,
                 from /usr/include/boost/smart_ptr/detail/shared_count.hpp:31,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh:27,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alignment_handle.hh:27,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/aligned_column.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc:20:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc:128:27:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/sequence_handle.hh:27,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alignment_handle.hh:28:
/usr/include/boost/variant/variant.hpp: In function 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/string:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc:128:27:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc:128:27:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/conservation.cc:128:27:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'std::vector<float> ost::seq::alg::Conservation(const ost::seq::AlignmentHandle&, bool, const String&, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/merge_pairwise_alignments.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -MF CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o.d -o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/pair_subst_weight_matrix.cc
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -MF CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o.d -o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/semiglobal_align.cc
[ 25%] Linking CXX shared library ../../../stage/lib/libost_db.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_db.dir/link.txt --verbose=1
[ 25%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/sequence_identity.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_db.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_db.so.2.10 -o ../../../stage/lib/libost_db.so.2.10.0 CMakeFiles/ost_db.dir/sqlite_wrap.cc.o CMakeFiles/ost_db.dir/linear_indexer.cc.o CMakeFiles/ost_db.dir/binary_container.cc.o CMakeFiles/ost_db.dir/extract_data_helper.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_db.so.2.10.0 ../../../stage/lib/libost_db.so.2.10 ../../../stage/lib/libost_db.so
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/processor.cc.o -MF CMakeFiles/ost_conop.dir/processor.cc.o.d -o CMakeFiles/ost_conop.dir/processor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/processor.cc
[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o
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[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o
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[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/hmm_pseudo_counts.cc
[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -MF CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o.d -o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/hmm_score.cc
[ 26%] Building CXX object modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_SEQ_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -MF CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o.d -o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/wrap_parasail.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/amino_acids.cc.o -MF CMakeFiles/ost_conop.dir/amino_acids.cc.o.d -o CMakeFiles/ost_conop.dir/amino_acids.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/amino_acids.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/conop.cc.o -MF CMakeFiles/ost_conop.dir/conop.cc.o.d -o CMakeFiles/ost_conop.dir/conop.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/conop.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib_base.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/compound_lib_base.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/minimal_compound_lib.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/heuristic.cc.o -MF CMakeFiles/ost_conop.dir/heuristic.cc.o.d -o CMakeFiles/ost_conop.dir/heuristic.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/heuristic.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/diag.cc.o -MF CMakeFiles/ost_conop.dir/diag.cc.o.d -o CMakeFiles/ost_conop.dir/diag.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/diag.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/rule_based.cc.o -MF CMakeFiles/ost_conop.dir/rule_based.cc.o.d -o CMakeFiles/ost_conop.dir/rule_based.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/rule_based.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/model_check.cc.o -MF CMakeFiles/ost_conop.dir/model_check.cc.o.d -o CMakeFiles/ost_conop.dir/model_check.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/model_check.cc
[ 26%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/info/_ost_info.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_info.dir/link.txt --verbose=1
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound.cc.o -MF CMakeFiles/ost_conop.dir/compound.cc.o.d -o CMakeFiles/ost_conop.dir/compound.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/compound.cc
[ 26%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/compound_lib.cc.o -MF CMakeFiles/ost_conop.dir/compound_lib.cc.o.d -o CMakeFiles/ost_conop.dir/compound_lib.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/compound_lib.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_info.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/info/_ost_info.so CMakeFiles/_ost_info.dir/wrap_info.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/info/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/info/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 26%] Built target _ost_info
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector<std::__cxx11::basic_string<char> >&, char*, char*, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, std::vector<int>, std::vector<int>, int, int, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:686:21: warning: 'invmap' may be used uninitialized [-Wmaybe-uninitialized]
  686 |         NWalign_main(seqx, seqy, xlen, ylen, sequence[0],sequence[1],
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  687 |             mol_type, invmap, 0, glocal);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:676:14: note: 'invmap' was declared here
  676 |         int *invmap;
      |              ^~~~~~
[ 26%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_atom.cc
[ 27%] Building CXX object modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_CONOP -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/src/CMakeFiles/ost_conop.dir/ring_finder.cc.o -MF CMakeFiles/ost_conop.dir/ring_finder.cc.o.d -o CMakeFiles/ost_conop.dir/ring_finder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/ring_finder.cc
[ 27%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_atom_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_atom_view.cc
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 27%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data.cc.o -MF CMakeFiles/_ost_img.dir/export_data.cc.o.d -o CMakeFiles/_ost_img.dir/export_data.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_data.cc
[ 27%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bond.cc.o -MF CMakeFiles/_ost_mol.dir/export_bond.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bond.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_bond.cc
[ 27%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_chain.cc
[ 27%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_chain_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_chain_view.cc
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /usr/include/c++/14/complex:45,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:24,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/module_config.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/conop/src/ring_finder.cc:19:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26:
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::BondHandle]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 27%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_group.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_coord_group.cc
[ 27%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -MF CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o.d -o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_coord_frame.cc
[ 28%] Linking CXX shared library ../../../../stage/lib/libost_seq_alg.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_seq_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_seq_alg.so.2.10 -o ../../../../stage/lib/libost_seq_alg.so.2.10.0 CMakeFiles/ost_seq_alg.dir/clip_alignment.cc.o CMakeFiles/ost_seq_alg.dir/conservation.cc.o CMakeFiles/ost_seq_alg.dir/contact_prediction_score.cc.o CMakeFiles/ost_seq_alg.dir/contact_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/distance_map.cc.o CMakeFiles/ost_seq_alg.dir/entropy.cc.o CMakeFiles/ost_seq_alg.dir/global_align.cc.o CMakeFiles/ost_seq_alg.dir/ins_del.cc.o CMakeFiles/ost_seq_alg.dir/local_align.cc.o CMakeFiles/ost_seq_alg.dir/merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg.dir/pair_subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/semiglobal_align.cc.o CMakeFiles/ost_seq_alg.dir/sequence_identity.cc.o CMakeFiles/ost_seq_alg.dir/sequence_similarity.cc.o CMakeFiles/ost_seq_alg.dir/subst_weight_matrix.cc.o CMakeFiles/ost_seq_alg.dir/variance_map.cc.o CMakeFiles/ost_seq_alg.dir/hmm_pseudo_counts.cc.o CMakeFiles/ost_seq_alg.dir/hmm_score.cc.o CMakeFiles/ost_seq_alg.dir/wrap_parasail.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_seq_alg.so.2.10 ../../../../stage/lib/libost_seq_alg.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 28%] Built target ost_seq_alg
[ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_editors.cc.o -MF CMakeFiles/_ost_mol.dir/export_editors.cc.o.d -o CMakeFiles/_ost_mol.dir/export_editors.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_editors.cc
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h: In function 'int extract_aln_from_resi(std::vector<std::__cxx11::basic_string<char> >&, char*, char*, std::vector<std::__cxx11::basic_string<char> >, std::vector<std::__cxx11::basic_string<char> >, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:545:21: warning: 'invmap' may be used uninitialized [-Wmaybe-uninitialized]
  545 |         NWalign_main(seqx, seqy, xlen, ylen, sequence[0],sequence[1],
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  546 |             mol_type, invmap, 0, glocal);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/NWalign.h:535:14: note: 'invmap' was declared here
  535 |         int *invmap;
      |              ^~~~~~
[ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_entity.cc
[ 28%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -MF CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o.d -o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_data_algorithm.cc
[ 28%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_entity_view.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_property_id.cc.o -MF CMakeFiles/_ost_mol.dir/export_property_id.cc.o.d -o CMakeFiles/_ost_mol.dir/export_property_id.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_property_id.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query.cc.o -MF CMakeFiles/_ost_mol.dir/export_query.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_query.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_residue.cc
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_extent.cc.o -MF CMakeFiles/_ost_img.dir/export_extent.cc.o.d -o CMakeFiles/_ost_img.dir/export_extent.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_extent.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -MF CMakeFiles/_ost_mol.dir/export_residue_view.cc.o.d -o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_residue_view.cc
[ 30%] Linking CXX shared library ../../../stage/lib/libost_conop.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_conop.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_conop.so.2.10 -o ../../../stage/lib/libost_conop.so.2.10.0 CMakeFiles/ost_conop.dir/processor.cc.o CMakeFiles/ost_conop.dir/amino_acids.cc.o CMakeFiles/ost_conop.dir/conop.cc.o CMakeFiles/ost_conop.dir/minimal_compound_lib.cc.o CMakeFiles/ost_conop.dir/compound_lib_base.cc.o CMakeFiles/ost_conop.dir/heuristic.cc.o CMakeFiles/ost_conop.dir/diag.cc.o CMakeFiles/ost_conop.dir/rule_based.cc.o CMakeFiles/ost_conop.dir/model_check.cc.o CMakeFiles/ost_conop.dir/compound.cc.o CMakeFiles/ost_conop.dir/compound_lib.cc.o CMakeFiles/ost_conop.dir/ring_finder.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10 ../../../stage/lib/libost_conop.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 30%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -MF CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o.d -o CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/svd_superpose.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_surface.cc.o -MF CMakeFiles/_ost_mol.dir/export_surface.cc.o.d -o CMakeFiles/_ost_mol.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_surface.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -MF CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o.d -o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_bounding_box.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_query_view_wrapper.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_torsion.cc.o -MF CMakeFiles/_ost_mol.dir/export_torsion.cc.o.d -o CMakeFiles/_ost_mol.dir/export_torsion.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_torsion.cc
In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33,
                 from /usr/include/c++/14/bits/allocator.h:46,
                 from /usr/include/c++/14/string:43,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/basic_fun.h:12:
In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = std::pair<double, int>; _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>]',
    inlined from 'static void std::allocator_traits<std::allocator<_CharT> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = std::pair<double, int>; _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>]' at /usr/include/c++/14/bits/alloc_traits.h:575:17,
    inlined from 'void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/vector.tcc:634:26,
    inlined from 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, int>}; _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/vector.tcc:123:21,
    inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = std::pair<double, int>; _Alloc = std::allocator<std::pair<double, int> >]' at /usr/include/c++/14/bits/stl_vector.h:1301:21,
    inlined from 'int trimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:2955:33:
/usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'dinter' may be used uninitialized [-Wmaybe-uninitialized]
  191 |         { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); }
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h: In function 'int trimComplex(std::vector<std::vector<std::vector<double> > >&, std::vector<std::vector<char> >&, std::vector<std::vector<char> >&, std::vector<int>&, const std::vector<std::vector<std::vector<double> > >&, const std::vector<std::vector<char> >&, const std::vector<std::vector<char> >&, const std::vector<int>&, const std::vector<int>&, int, int)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/USalign/MMalign.h:2908:12: note: 'dinter' was declared here
 2908 |     double dinter;
      |            ^~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc: In function 'ost::bindings::MMAlignResult ost::bindings::WrappedMMAlign(const std::vector<geom::Vec3List>&, const std::vector<geom::Vec3List>&, const ost::seq::SequenceList&, const ost::seq::SequenceList&, const std::vector<bool>&, const std::vector<bool>&, bool, const std::map<int, int>&)':
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqx' may be used uninitialized [-Wmaybe-uninitialized]
  904 |     if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  905 |         seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  906 |         ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  907 |         chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  908 |         sequence, d0_scale, fast_opt, chainmap);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:551:11: note: 'seqx' was declared here
  551 |   char   *seqx, *seqy;           // for the protein sequence
      |           ^~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'seqy' may be used uninitialized [-Wmaybe-uninitialized]
  904 |     if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  905 |         seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  906 |         ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  907 |         chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  908 |         sequence, d0_scale, fast_opt, chainmap);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:551:18: note: 'seqy' was declared here
  551 |   char   *seqx, *seqy;           // for the protein sequence
      |                  ^~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secx' may be used uninitialized [-Wmaybe-uninitialized]
  904 |     if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  905 |         seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  906 |         ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  907 |         chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  908 |         sequence, d0_scale, fast_opt, chainmap);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:552:11: note: 'secx' was declared here
  552 |   char   *secx, *secy;           // for the secondary structure
      |           ^~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:904:36: warning: 'secy' may be used uninitialized [-Wmaybe-uninitialized]
  904 |     if (byresi_opt==0) MMalign_iter(max_total_score, max_iter, xa_vec, ya_vec,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  905 |         seqx_vec, seqy_vec, secx_vec, secy_vec, mol_vec1, mol_vec2, xlen_vec,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  906 |         ylen_vec, xa, ya, seqx, seqy, secx, secy, len_aa, len_na, chain1_num,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  907 |         chain2_num, TMave_mat, seqxA_mat, seqyA_mat, assign1_list, assign2_list,
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  908 |         sequence, d0_scale, fast_opt, chainmap);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/bindings/src/wrap_tmalign.cc:552:18: note: 'secy' was declared here
  552 |   char   *secx, *secy;           // for the secondary structure
      |                  ^~~~
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_visitor.cc.o -MF CMakeFiles/_ost_mol.dir/export_visitor.cc.o.d -o CMakeFiles/_ost_mol.dir/export_visitor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_visitor.cc
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_handle.cc.o -MF CMakeFiles/_ost_img.dir/export_image_handle.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_image_handle.cc
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -MF CMakeFiles/_ost_mol.dir/wrap_mol.cc.o.d -o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/wrap_mol.cc
[ 30%] Linking CXX shared library ../../../stage/lib/libost_bindings.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_bindings.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_bindings.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_bindings.so.2.10 -o ../../../stage/lib/libost_bindings.so.2.10.0 CMakeFiles/ost_bindings.dir/wrap_tmalign.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_bindings.so.2.10.0 ../../../stage/lib/libost_bindings.so.2.10 ../../../stage/lib/libost_bindings.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 30%] Built target ost_bindings
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake "--color="
[ 30%] Building CXX object modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -MF CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o.d -o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/export_entity_property_mapper.cc
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/bitmap_io.cc.o
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[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_peak.cc.o -MF CMakeFiles/_ost_img.dir/export_peak.cc.o.d -o CMakeFiles/_ost_img.dir/export_peak.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_peak.cc
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_phase.cc.o -MF CMakeFiles/_ost_img.dir/export_phase.cc.o.d -o CMakeFiles/_ost_img.dir/export_phase.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_phase.cc
[ 30%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/exporter.cc.o -MF CMakeFiles/ost_gfx.dir/exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/exporter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/exporter.cc
[ 30%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_point.cc.o -MF CMakeFiles/_ost_img.dir/export_point.cc.o.d -o CMakeFiles/_ost_img.dir/export_point.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_point.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_progress.cc.o -MF CMakeFiles/_ost_img.dir/export_progress.cc.o.d -o CMakeFiles/_ost_img.dir/export_progress.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_progress.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_raster_image.cc.o -MF CMakeFiles/_ost_img.dir/export_raster_image.cc.o.d -o CMakeFiles/_ost_img.dir/export_raster_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_raster_image.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_size.cc.o -MF CMakeFiles/_ost_img.dir/export_size.cc.o.d -o CMakeFiles/_ost_img.dir/export_size.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_size.cc
In file included from /usr/include/boost/python/type_id.hpp:11,
                 from /usr/include/boost/python/instance_holder.hpp:11,
                 from /usr/include/boost/python/object/pointer_holder.hpp:14,
                 from /usr/include/boost/python/to_python_indirect.hpp:10,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:10,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/args.hpp:22,
                 from /usr/include/boost/python.hpp:11,
                 from /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_phase.cc:25:
/usr/include/boost/operators.hpp: In instantiation of 'ost::img::Phase boost::operators_impl::operator+(const ost::img::Phase&, const ost::img::Phase&)':
/usr/include/boost/python/operators.hpp:212:1:   required from 'static PyObject* boost::python::detail::operator_l<boost::python::detail::op_add>::apply<L, R>::execute(lhs&, const rhs&) [with L = ost::img::Phase; R = ost::img::Phase; PyObject = _object; lhs = ost::img::Phase; rhs = ost::img::Phase]'
  212 | BOOST_PYTHON_BINARY_OPERATOR(add, radd, +)
      | ^
/usr/include/boost/python/operators.hpp:154:15:   required from 'void boost::python::detail::operator_<id, L, R>::visit(ClassT&) const [with ClassT = boost::python::class_<ost::img::Phase>; boost::python::detail::operator_id id = boost::python::detail::op_add; L = boost::python::self_ns::self_t; R = boost::python::self_ns::self_t]'
  154 |             , &generator::template apply<
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~
  155 |                  BOOST_DEDUCED_TYPENAME ClassT::wrapped_type
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  156 |               >::execute
      |               ~~~~~~~~~~
/usr/include/boost/python/def_visitor.hpp:31:34:   required from 'static void boost::python::def_visitor_access::visit(const V&, classT&) [with V = boost::python::def_visitor<boost::python::detail::operator_<boost::python::detail::op_add, boost::python::self_ns::self_t, boost::python::self_ns::self_t> >; classT = boost::python::class_<ost::img::Phase>]'
   31 |         v.derived_visitor().visit(c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/boost/python/def_visitor.hpp:67:34:   required from 'void boost::python::def_visitor<DerivedVisitor>::visit(classT&) const [with classT = boost::python::class_<ost::img::Phase>; DerivedVisitor = boost::python::detail::operator_<boost::python::detail::op_add, boost::python::self_ns::self_t, boost::python::self_ns::self_t>]'
   67 |         def_visitor_access::visit(*this, c);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/boost/python/class.hpp:221:22:   required from 'boost::python::class_<T, X1, X2, X3>::self& boost::python::class_<T, X1, X2, X3>::def(const boost::python::def_visitor<Derived>&) [with Derived = boost::python::detail::operator_<boost::python::detail::op_add, boost::python::self_ns::self_t, boost::python::self_ns::self_t>; W = ost::img::Phase; X1 = boost::python::detail::not_specified; X2 = boost::python::detail::not_specified; X3 = boost::python::detail::not_specified; self = boost::python::class_<ost::img::Phase>]'
  221 |         visitor.visit(*this);
      |         ~~~~~~~~~~~~~^~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_phase.cc:40:9:   required from here
   36 |   class_<Phase> ("Phase" ,init<>())
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |     .def(init<Complex>())//init<Complex> has to be before init<Real> because of implicit Real->Complex conversion
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   38 |     .def(init<Real>())
      |     ~~~~~~~~~~~~~~~~~~
   39 |     .def(init<Phase>())
      |     ~~~~~~~~~~~~~~~~~~~
   40 |     .def(self+self)
      |     ~~~~^~~~~~~~~~~
/usr/include/boost/operators.hpp:269:1: note: parameter passing for argument of type 'ost::img::Phase' when C++17 is enabled changed to match C++14 in GCC 10.1
  269 | BOOST_BINARY_OPERATOR_COMMUTATIVE( addable, + )
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/collada_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/collada_exporter.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_mask.cc.o -MF CMakeFiles/_ost_img.dir/export_mask.cc.o.d -o CMakeFiles/_ost_img.dir/export_mask.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_mask.cc
[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -MF CMakeFiles/ost_mol_alg.dir/clash_score.cc.o.d -o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/clash_score.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_image_list.cc.o -MF CMakeFiles/_ost_img.dir/export_image_list.cc.o.d -o CMakeFiles/_ost_img.dir/export_image_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_image_list.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/export_map.cc.o -MF CMakeFiles/_ost_img.dir/export_map.cc.o.d -o CMakeFiles/_ost_img.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/export_map.cc
[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color.cc.o -MF CMakeFiles/ost_gfx.dir/color.cc.o.d -o CMakeFiles/ost_gfx.dir/color.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color.cc
[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/sec_structure_segments.cc
[ 31%] Building CXX object modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/base/pymod/CMakeFiles/_ost_img.dir/wrap_img.cc.o -MF CMakeFiles/_ost_img.dir/wrap_img.cc.o.d -o CMakeFiles/_ost_img.dir/wrap_img.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/wrap_img.cc
[ 31%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/local_dist_diff_test.cc
[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/primitives.cc.o -MF CMakeFiles/ost_gfx.dir/primitives.cc.o.d -o CMakeFiles/ost_gfx.dir/primitives.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/primitives.cc
[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/entity.cc.o -MF CMakeFiles/ost_gfx.dir/entity.cc.o.d -o CMakeFiles/ost_gfx.dir/entity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/entity.cc
[ 31%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -MF CMakeFiles/ost_gfx.dir/symmetry_node.cc.o.d -o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/symmetry_node.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/local_dist_diff_test.cc:6:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_node.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_node.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_node.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/distance_test_common.cc
[ 32%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -MF CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o.d -o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/distance_rmsd_test.cc
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_object.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_object.cc
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_prim.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_prim.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh:27,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh:31,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/entity.cc:39:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/entity.cc:52:
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -MF CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o.d -o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_test_object.cc
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/entity.cc: In member function 'void ost::gfx::Entity::ColorBy(const String&, const ost::gfx::Color&, const ost::gfx::Color&, ost::mol::Prop::Level)':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/entity.cc:965:72: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
  965 |   std::pair<float,float> minmax = this->GetView().GetMinMax(prop, level);
      |                                                                        ^
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/input.cc.o -MF CMakeFiles/ost_gfx.dir/input.cc.o.d -o CMakeFiles/ost_gfx.dir/input.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/input.cc
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/prim_list.cc.o -MF CMakeFiles/ost_gfx.dir/prim_list.cc.o.d -o CMakeFiles/ost_gfx.dir/prim_list.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/prim_list.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/distance_rmsd_test.hh:24,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/distance_rmsd_test.cc:3:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 32%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/scene.cc.o -MF CMakeFiles/ost_gfx.dir/scene.cc.o.d -o CMakeFiles/ost_gfx.dir/scene.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/scene.cc
[ 33%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -MF CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o.d -o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/superpose_frames.cc
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/selection.cc.o -MF CMakeFiles/ost_gfx.dir/selection.cc.o.d -o CMakeFiles/ost_gfx.dir/selection.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/selection.cc
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/distance_rmsd_test.cc:1:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/distance_rmsd_test.cc:2:
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_test_object.hh:28,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_test_object.cc:31:
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
  124 |   virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
      |                               ^~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_test_object.hh:40:31: note:   by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
   40 |   virtual geom::AlignedCuboid GetBoundingBox() const;
      |                               ^~~~~~~~~~~~~~
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/surface.cc.o -MF CMakeFiles/ost_gfx.dir/surface.cc.o.d -o CMakeFiles/ost_gfx.dir/surface.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/surface.cc
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient.cc.o -MF CMakeFiles/ost_gfx.dir/gradient.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gradient.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/scene.cc:49:
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
  124 |   virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
      |                               ^~~~~~~~~~~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/scene.cc:50:
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_test_object.hh:40:31: note:   by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
   40 |   virtual geom::AlignedCuboid GetBoundingBox() const;
      |                               ^~~~~~~~~~~~~~
[ 33%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -MF CMakeFiles/ost_gfx.dir/gradient_manager.cc.o.d -o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gradient_manager.cc
[ 33%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/img/_ost_img.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img.dir/link.txt --verbose=1
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/vertex_array.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_img.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/img/_ost_img.so CMakeFiles/_ost_img.dir/export_data.cc.o CMakeFiles/_ost_img.dir/export_data_algorithm.cc.o CMakeFiles/_ost_img.dir/export_extent.cc.o CMakeFiles/_ost_img.dir/export_image_handle.cc.o CMakeFiles/_ost_img.dir/export_peak.cc.o CMakeFiles/_ost_img.dir/export_phase.cc.o CMakeFiles/_ost_img.dir/export_point.cc.o CMakeFiles/_ost_img.dir/export_progress.cc.o CMakeFiles/_ost_img.dir/export_raster_image.cc.o CMakeFiles/_ost_img.dir/export_size.cc.o CMakeFiles/_ost_img.dir/export_mask.cc.o CMakeFiles/_ost_img.dir/export_image_list.cc.o CMakeFiles/_ost_img.dir/export_map.cc.o CMakeFiles/_ost_img.dir/wrap_img.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/./__init__.pyc\",\"__init__.py\",doraise=True)"
[ 35%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -MF CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o.d -o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/vertex_array_helper.cc
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 35%] Built target _ost_img
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 35%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -MF CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o.d -o CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/wrap_alg.cc
[ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -MF CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o.d -o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/filter_clashes.cc
[ 35%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -MF CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o.d -o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/construct_cbeta.cc
[ 36%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/mol/_ost_mol.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol.dir/link.txt --verbose=1
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/surface.hh:32,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/surface.cc:28:
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/material.cc.o -MF CMakeFiles/ost_gfx.dir/material.cc.o.d -o CMakeFiles/ost_gfx.dir/material.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/material.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/povray.cc.o -MF CMakeFiles/ost_gfx.dir/povray.cc.o.d -o CMakeFiles/ost_gfx.dir/povray.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/povray.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -MF CMakeFiles/ost_gfx.dir/gost_exporter.cc.o.d -o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/gost_exporter.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/filter_clashes.cc:24:
/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_mol.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/mol/_ost_mol.so CMakeFiles/_ost_mol.dir/export_atom.cc.o CMakeFiles/_ost_mol.dir/export_atom_view.cc.o CMakeFiles/_ost_mol.dir/export_bond.cc.o CMakeFiles/_ost_mol.dir/export_chain.cc.o CMakeFiles/_ost_mol.dir/export_chain_view.cc.o CMakeFiles/_ost_mol.dir/export_coord_group.cc.o CMakeFiles/_ost_mol.dir/export_coord_frame.cc.o CMakeFiles/_ost_mol.dir/export_editors.cc.o CMakeFiles/_ost_mol.dir/export_entity.cc.o CMakeFiles/_ost_mol.dir/export_entity_view.cc.o CMakeFiles/_ost_mol.dir/export_property_id.cc.o CMakeFiles/_ost_mol.dir/export_query.cc.o CMakeFiles/_ost_mol.dir/export_residue.cc.o CMakeFiles/_ost_mol.dir/export_residue_view.cc.o CMakeFiles/_ost_mol.dir/export_surface.cc.o CMakeFiles/_ost_mol.dir/export_bounding_box.cc.o CMakeFiles/_ost_mol.dir/export_query_view_wrapper.cc.o CMakeFiles/_ost_mol.dir/export_torsion.cc.o CMakeFiles/_ost_mol.dir/export_visitor.cc.o CMakeFiles/_ost_mol.dir/wrap_mol.cc.o CMakeFiles/_ost_mol.dir/export_entity_property_mapper.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 36%] Built target _ost_mol
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 36%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_sequence.cc.o -MF CMakeFiles/_ost_seq.dir/export_sequence.cc.o.d -o CMakeFiles/_ost_seq.dir/export_sequence.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/export_sequence.cc
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/vertex_array.cc:1311:8: warning: 'geom::Vec3 ost::gfx::{anonymous}::make_aaline_edge(const geom::Vec2&, const geom::Vec2&, float)' defined but not used [-Wunused-function]
 1311 |   Vec3 make_aaline_edge(const Vec2& c1, const Vec2& c0, float s)
      |        ^~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/vertex_array.cc:1239:8: warning: 'void ost::gfx::{anonymous}::render_aalines(AALineList&, float, float)' defined but not used [-Wunused-function]
 1239 |   void render_aalines(AALineList& line_list, float w, float r)
      |        ^~~~~~~~~~~~~~
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/texture.cc.o -MF CMakeFiles/ost_gfx.dir/texture.cc.o.d -o CMakeFiles/ost_gfx.dir/texture.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/texture.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/color_op.cc
[ 36%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/trajectory_analysis.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_element_color_op.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_chain_color_op.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/uniform_color_op.cc
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_color_op.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_element_color_op.cc:22:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/filter_clashes.cc:19:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/filter_clashes.cc:20:
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = bool; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:372:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetBoolProp(const String&, bool) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 36%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/entity_view_color_op.cc
[ 36%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -MF CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o.d -o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/structure_analysis.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_chain_color_op.cc:23:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_level_color_op.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -MF CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_detail.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cartoon_renderer.cc
[ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -MF CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o.d -o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/consistency_checks.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/custom_renderer.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/surface.hh:32,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/basic_gradient_color_op.cc:22:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/surface.hh:102:8: note:   by 'ost::gfx::Surface::Apply'
  102 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -MF CMakeFiles/ost_mol_alg.dir/pdbize.cc.o.d -o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/pdbize.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.cc
[ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -MF CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/adjacency_bitmap.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/simple_renderer.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/sline_renderer.cc
[ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -MF CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o.d -o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc
[ 37%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/line_trace_renderer.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.hh:24,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.cc:19:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.cc:23:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 37%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -MF CMakeFiles/ost_mol_alg.dir/domain_find.cc.o.d -o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/domain_find.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh:27,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.cc:19:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -MF CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/simple_renderer.cc:26:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/connect_renderer_base.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer_base.cc
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/ostream:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/log.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:1:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:2:
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:66:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::CalcContactNodeDegree(const ContactList&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 38%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -MF CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o.d -o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/similarity_matrix.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -MF CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/mapped_property.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh:35,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.hh:29,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.cc:22:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -MF CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/tabulated_trig.cc
[ 38%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -MF CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer.cc
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:445:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:448:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/contact_overlap.cc:453:23:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void ost::mol::alg::DomainsFromCOM(const SimilarityMatrix&, ost::seq::AlignmentHandle, Real, int, int)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 40%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -MF CMakeFiles/ost_mol_alg.dir/accessibility.cc.o.d -o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc
[ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -MF CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/fast_spheres.cc
[ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/render_options.cc
[ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_render_options.cc
[ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/custom_render_options.cc
[ 40%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cpk_render_options.cc
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
                 from /usr/include/c++/14/bits/specfun.h:43,
                 from /usr/include/c++/14/cmath:3906,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/module_config.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_view.hh:24,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/accessibility.hh:23,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:1:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:312:40:   required from here
  312 |           arcs.push_back(std::make_pair(arc_start, arc_end));
      |                          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.cc
[ 41%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -MF CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o.d -o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/sec_struct.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/sline_render_options.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_trace_render_options.cc
In file included from /usr/include/c++/14/bits/stl_tempbuf.h:62,
                 from /usr/include/c++/14/memory:66,
                 from /usr/include/boost/smart_ptr/detail/sp_counted_impl.hpp:35,
                 from /usr/include/boost/smart_ptr/detail/shared_count.hpp:27,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.cc:23:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.cc:81:31:   required from here
   81 |   blur_factors_=std::make_pair(bf1, bf2);
      |                 ~~~~~~~~~~~~~~^~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cartoon_render_options.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -MF CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o.d -o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/trace_render_options.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -MF CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o.d -o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/map_handle_color_op.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_iso.cc.o -MF CMakeFiles/ost_gfx.dir/map_iso.cc.o.d -o CMakeFiles/ost_gfx.dir/map_iso.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/map_iso.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/map_slab.cc.o -MF CMakeFiles/ost_gfx.dir/map_slab.cc.o.d -o CMakeFiles/ost_gfx.dir/map_slab.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/map_slab.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/domain_find.cc:11:
In member function 'void ost::mol::alg::AdjacencyBitmap::set(size_t, size_t, bool, bool)',
    inlined from 'ost::mol::alg::AdjacencyBitmap::AdjacencyBitmap(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, int, int)' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:49:16,
    inlined from 'static ost::mol::alg::DomainsPtr ost::mol::alg::Domains::FromDistMats(const ost::mol::alg::DistanceMatrix&, const ost::mol::alg::DistanceMatrix&, Real, Real, Real, int, bool, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/domain_find.cc:363:37:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/adjacency_bitmap.hh:109:23: warning: '*(uint64_t*)<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
  109 |       data_[byte_index] &= ~(one << bit_index);
      |       ~~~~~~~~~~~~~~~~^
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
                 from /usr/include/c++/14/vector:62,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/sec_struct.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/sec_struct.cc:1:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float; _T2 = float; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/sec_struct.cc:567:31:   required from here
  567 |                 std::make_pair(std::numeric_limits<Real>::max(),
      |                 ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  568 |                                std::numeric_limits<Real>::max());
      |                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.cc
[ 41%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_o.cc
[ 41%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -MF CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o.d -o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/nonstandard.cc
In file included from /usr/include/eigen3/Eigen/Core:341,
                 from /usr/include/eigen3/Eigen/QR:11,
                 from /usr/include/eigen3/Eigen/SVD:11,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cartoon_renderer.cc:26:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<float, float>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<float>, const Eigen::Matrix<float, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<float, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<float, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
  327 |     internal::triangular_matrix_vector_product
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  328 |       <Index,Mode,
      |       ~~~~~~~~~~~~
  329 |        LhsScalar, LhsBlasTraits::NeedToConjugate,
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  330 |        RhsScalar, RhsBlasTraits::NeedToConjugate,
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  331 |        RowMajor>
      |        ~~~~~~~~~
  332 |       ::run(actualLhs.rows(),actualLhs.cols(),
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  333 |             actualLhs.data(),actualLhs.outerStride(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  334 |             actualRhsPtr,1,
      |             ~~~~~~~~~~~~~~~
  335 |             dest.data(),dest.innerStride(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  336 |             actualAlpha);
      |             ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type 'const float*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = float; bool ConjLhs = false; RhsScalar = float; bool ConjRhs = false; int Version = 0]' declared here
  105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 41%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_filter.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/export_filter.cc
[ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -MF CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.cc
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/map_slab.cc: In function 'std::pair<float, float> ost::gfx::{anonymous}::calc_sr(float, float, float, float, float, float)':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/map_slab.cc:182:53: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
  182 |                                   float cx, float cy)
      |                                                     ^
[ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/molck.cc.o -MF CMakeFiles/ost_mol_alg.dir/molck.cc.o.d -o CMakeFiles/ost_mol_alg.dir/molck.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/molck.cc
[ 42%] Building CXX object modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DOST_MODULE_OST_GFX -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/src/CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -MF CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o.d -o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/octree_isocont.cc
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.cc: In member function 'std::pair<float, float> ost::gfx::impl::MapOctree::BuildOctreeRec(const ost::gfx::impl::OcRangeVector&, uint16_t, ost::img::image_state::RealSpatialImageState*, const ost::img::Extent&, ost::gfx::impl::OctreeNode&)':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.cc:84:68: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   84 |                                                  OctreeNode& parent)
      |                                                                    ^
[ 42%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -MF CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o.d -o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/find_membrane.cc
[ 42%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/export_normalizer.cc
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /usr/include/c++/14/complex:45,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:24:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_base.hh:25,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_view.hh:27:
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 43%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/export_transcendentals.cc
[ 43%] Building CXX object modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_img_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -MF CMakeFiles/_ost_img_alg.dir/export_polar.cc.o.d -o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/export_polar.cc
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:778:21:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:778:21:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:778:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:778:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:785:32:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:785:32:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:785:32:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:785:32:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:788:21:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:788:21:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:788:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:788:21:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:803:35:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:803:35:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:803:35:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:803:35:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:808:35:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:808:35:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:808:35:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/accessibility.cc:808:35:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'Real {anonymous}::SetAccessibilityProps(ost::mol::EntityView&, ost::mol::AtomViewList&, const std::vector<float>&, const String&, const String&, const String&, ost::mol::alg::AccessibilityAlgorithm)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 43%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -MF CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o.d -o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/entity_to_density.cc
[ 43%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/biounit.cc.o -MF CMakeFiles/ost_mol_alg.dir/biounit.cc.o.d -o CMakeFiles/ost_mol_alg.dir/biounit.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/biounit.cc
[ 43%] Building CXX object modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_ALG -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/gdt.cc.o -MF CMakeFiles/ost_mol_alg.dir/gdt.cc.o.d -o CMakeFiles/ost_mol_alg.dir/gdt.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/gdt.cc
[ 43%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -MF CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o.d -o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/export_profile_handle.cc
[ 43%] Building CXX object modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -MF CMakeFiles/_ost_seq.dir/wrap_seq.cc.o.d -o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/wrap_seq.cc
[ 43%] Linking CXX shared library ../../../stage/lib/libost_gfx.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/test_texture.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/textures/test_texture.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/glyph_texture.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/textures/glyph_texture.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_gfx.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_gfx.so.2.10 -o ../../../stage/lib/libost_gfx.so.2.10.0 CMakeFiles/ost_gfx.dir/bitmap_io.cc.o CMakeFiles/ost_gfx.dir/exporter.cc.o CMakeFiles/ost_gfx.dir/collada_exporter.cc.o CMakeFiles/ost_gfx.dir/color.cc.o CMakeFiles/ost_gfx.dir/primitives.cc.o CMakeFiles/ost_gfx.dir/entity.cc.o CMakeFiles/ost_gfx.dir/symmetry_node.cc.o CMakeFiles/ost_gfx.dir/gfx_node.cc.o CMakeFiles/ost_gfx.dir/gfx_object.cc.o CMakeFiles/ost_gfx.dir/gfx_prim.cc.o CMakeFiles/ost_gfx.dir/gfx_test_object.cc.o CMakeFiles/ost_gfx.dir/input.cc.o CMakeFiles/ost_gfx.dir/prim_list.cc.o CMakeFiles/ost_gfx.dir/scene.cc.o CMakeFiles/ost_gfx.dir/selection.cc.o CMakeFiles/ost_gfx.dir/surface.cc.o CMakeFiles/ost_gfx.dir/gradient.cc.o CMakeFiles/ost_gfx.dir/gradient_manager.cc.o CMakeFiles/ost_gfx.dir/vertex_array.cc.o CMakeFiles/ost_gfx.dir/vertex_array_helper.cc.o CMakeFiles/ost_gfx.dir/material.cc.o CMakeFiles/ost_gfx.dir/povray.cc.o CMakeFiles/ost_gfx.dir/gost_exporter.cc.o CMakeFiles/ost_gfx.dir/texture.cc.o CMakeFiles/ost_gfx.dir/color_ops/color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_element_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/by_chain_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/uniform_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/entity_view_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/basic_gradient_color_op.cc.o CMakeFiles/ost_gfx.dir/color_ops/gradient_level_color_op.cc.o CMakeFiles/ost_gfx.dir/impl/entity_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/entity_detail.cc.o CMakeFiles/ost_gfx.dir/impl/cartoon_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/custom_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/cpk_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/debug_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/simple_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/sline_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/line_trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/backbone_trace.cc.o CMakeFiles/ost_gfx.dir/impl/connect_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer_base.cc.o CMakeFiles/ost_gfx.dir/impl/mapped_property.cc.o CMakeFiles/ost_gfx.dir/impl/tabulated_trig.cc.o CMakeFiles/ost_gfx.dir/impl/trace_renderer.cc.o CMakeFiles/ost_gfx.dir/impl/fast_spheres.cc.o CMakeFiles/ost_gfx.dir/render_options/render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/custom_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cpk_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/simple_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/sline_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/line_trace_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/cartoon_render_options.cc.o CMakeFiles/ost_gfx.dir/render_options/trace_render_options.cc.o CMakeFiles/ost_gfx.dir/color_ops/map_handle_color_op.cc.o CMakeFiles/ost_gfx.dir/map_iso.cc.o CMakeFiles/ost_gfx.dir/map_slab.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_s.cc.o CMakeFiles/ost_gfx.dir/impl/map_iso_gen_o.cc.o CMakeFiles/ost_gfx.dir/impl/map_octree.cc.o CMakeFiles/ost_gfx.dir/impl/octree_isocont.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_img_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_db.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gfx.so.2.10.0 ../../../stage/lib/libost_gfx.so.2.10 ../../../stage/lib/libost_gfx.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 43%] Built target ost_gfx
[ 43%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/img/alg/_ost_img_alg.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_img_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_img_alg.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/img/alg/_ost_img_alg.so CMakeFiles/_ost_img_alg.dir/wrap_alg.cc.o CMakeFiles/_ost_img_alg.dir/export_filter.cc.o CMakeFiles/_ost_img_alg.dir/export_normalizer.cc.o CMakeFiles/_ost_img_alg.dir/export_transcendentals.cc.o CMakeFiles/_ost_img_alg.dir/export_polar.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_img_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/img/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 43%] Built target _ost_img_alg
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/c++/14/bits/locale_classes.h:40,
                 from /usr/include/c++/14/bits/ios_base.h:41,
                 from /usr/include/c++/14/ios:44,
                 from /usr/include/c++/14/istream:40,
                 from /usr/include/c++/14/sstream:40,
                 from /usr/include/c++/14/complex:45,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/base.hh:24,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/module_config.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/find_membrane.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/find_membrane.cc:1:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/find_membrane.cc:1053:20:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26:
/usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/ios:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/find_membrane.cc:1053:20:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/find_membrane.cc:1053:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)' at /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/find_membrane.cc:1053:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'ost::mol::alg::FindMemParam ost::mol::alg::FindMembrane(ost::mol::EntityView&, bool, bool)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 43%] Linking CXX shared library ../../../../stage/lib/libost_mol_alg.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/atom_scattering_properties.txt /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/atom_scattering_properties.txt
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/stereo_chemical_props.txt /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/stereo_chemical_props.txt
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol_alg.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol_alg.so.2.10 -o ../../../../stage/lib/libost_mol_alg.so.2.10.0 CMakeFiles/ost_mol_alg.dir/svd_superpose.cc.o CMakeFiles/ost_mol_alg.dir/clash_score.cc.o CMakeFiles/ost_mol_alg.dir/sec_structure_segments.cc.o CMakeFiles/ost_mol_alg.dir/local_dist_diff_test.cc.o CMakeFiles/ost_mol_alg.dir/distance_test_common.cc.o CMakeFiles/ost_mol_alg.dir/distance_rmsd_test.cc.o CMakeFiles/ost_mol_alg.dir/superpose_frames.cc.o CMakeFiles/ost_mol_alg.dir/filter_clashes.cc.o CMakeFiles/ost_mol_alg.dir/construct_cbeta.cc.o CMakeFiles/ost_mol_alg.dir/trajectory_analysis.cc.o CMakeFiles/ost_mol_alg.dir/structure_analysis.cc.o CMakeFiles/ost_mol_alg.dir/consistency_checks.cc.o CMakeFiles/ost_mol_alg.dir/pdbize.cc.o CMakeFiles/ost_mol_alg.dir/adjacency_bitmap.cc.o CMakeFiles/ost_mol_alg.dir/contact_overlap.cc.o CMakeFiles/ost_mol_alg.dir/domain_find.cc.o CMakeFiles/ost_mol_alg.dir/similarity_matrix.cc.o CMakeFiles/ost_mol_alg.dir/accessibility.cc.o CMakeFiles/ost_mol_alg.dir/sec_struct.cc.o CMakeFiles/ost_mol_alg.dir/nonstandard.cc.o CMakeFiles/ost_mol_alg.dir/molck.cc.o CMakeFiles/ost_mol_alg.dir/find_membrane.cc.o CMakeFiles/ost_mol_alg.dir/entity_to_density.cc.o CMakeFiles/ost_mol_alg.dir/biounit.cc.o CMakeFiles/ost_mol_alg.dir/gdt.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_db.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../../stage/lib/libost_mol_alg.so.2.10 ../../../../stage/lib/libost_mol_alg.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake "--color="
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[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/convert.cc.o
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[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_manager.cc.o -MF CMakeFiles/ost_io.dir/io_manager.cc.o.d -o CMakeFiles/ost_io.dir/io_manager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/io_manager.cc
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/io_utils.cc.o -MF CMakeFiles/ost_io.dir/io_utils.cc.o.d -o CMakeFiles/ost_io.dir/io_utils.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/io_utils.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_crd_handler.cc
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pqr_handler.cc
[ 43%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mae_handler.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_reader.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pdb_handler.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_writer.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_sdf_handler.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mmcif_handler.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_reader.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_writer.cc
[ 45%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/seq/_ost_seq.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_seq.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/seq/_ost_seq.so CMakeFiles/_ost_seq.dir/export_sequence.cc.o CMakeFiles/_ost_seq.dir/export_profile_handle.cc.o CMakeFiles/_ost_seq.dir/wrap_seq.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/./__init__.pyc\",\"__init__.py\",doraise=True)"
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[ 45%] Built target _ost_seq
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color="
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[ 45%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -MF CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o.d -o CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/export_tmalign.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/save_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/save_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/save_entity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/save_entity.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_entity.cc.o -MF CMakeFiles/ost_io.dir/mol/load_entity.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_entity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_entity.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -MF CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o.d -o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_msms_handler.cc
[ 45%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/load_surface.cc.o -MF CMakeFiles/ost_io.dir/mol/load_surface.cc.o.d -o CMakeFiles/ost_io.dir/mol/load_surface.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_surface.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/chemdict_parser.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/io_profile.cc.o -MF CMakeFiles/ost_io.dir/mol/io_profile.cc.o.d -o CMakeFiles/ost_io.dir/mol/io_profile.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/io_profile.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -MF CMakeFiles/ost_io.dir/mol/dcd_io.cc.o.d -o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/dcd_io.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_parser.cc.o -MF CMakeFiles/ost_io.dir/mol/star_parser.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_parser.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_parser.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/star_writer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/star_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/star_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/star_writer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_writer.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_reader.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_info.cc
[ 46%] Building CXX object modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_bindings_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -MF CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o.d -o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/wrap_bindings.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_writer.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -MF CMakeFiles/ost_io.dir/mol/pdb_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_str.cc
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/sdf_str.cc.o -MF CMakeFiles/ost_io.dir/mol/sdf_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/sdf_str.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_str.cc
[ 46%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/bindings/_ost_bindings.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_bindings.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_bindings.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/bindings/_ost_bindings.so CMakeFiles/_ost_bindings.dir/export_tmalign.cc.o CMakeFiles/_ost_bindings.dir/wrap_bindings.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_bindings.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./__init__.pyc\",\"__init__.py\",doraise=True)"
[ 46%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o -MF CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o.d -o CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_str.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/lga.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./lga.pyc\",\"lga.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/hbplus.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hbplus.pyc\",\"hbplus.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/msms.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./msms.pyc\",\"msms.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/tmtools.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./tmtools.pyc\",\"tmtools.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/dssp.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dssp.pyc\",\"dssp.py\",doraise=True)"
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -MF CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o.d -o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/stereochemical_params_reader.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/clustalw.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./clustalw.pyc\",\"clustalw.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/utils.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./utils.pyc\",\"utils.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/naccess.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./naccess.pyc\",\"naccess.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/hhblits.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits.pyc\",\"hhblits.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/hhblits2.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits2.pyc\",\"hhblits2.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/hhblits3.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./hhblits3.pyc\",\"hhblits3.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/blast.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./blast.pyc\",\"blast.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/cadscore.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./cadscore.pyc\",\"cadscore.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/kclust.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./kclust.pyc\",\"kclust.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/ialign.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./ialign.pyc\",\"ialign.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/mmseqs2.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./mmseqs2.pyc\",\"mmseqs2.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod/dockq.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/bindings/./dockq.pyc\",\"dockq.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 47%] Built target _ost_bindings
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 47%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/export_linear_db.cc.o -MF CMakeFiles/_ost_db.dir/export_linear_db.cc.o.d -o CMakeFiles/_ost_db.dir/export_linear_db.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/pymod/export_linear_db.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/mol/omf.cc.o -MF CMakeFiles/ost_io.dir/mol/omf.cc.o.d -o CMakeFiles/ost_io.dir/mol/omf.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/omf.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/clustal_io_handler.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/stereochemical_params_reader.hh:23,
                 from /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/stereochemical_params_reader.cc:21:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/load.cc.o -MF CMakeFiles/ost_io.dir/seq/load.cc.o.d -o CMakeFiles/ost_io.dir/seq/load.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/load.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/save.cc.o -MF CMakeFiles/ost_io.dir/seq/save.cc.o.d -o CMakeFiles/ost_io.dir/seq/save.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/save.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/fasta_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pir_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/promod_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/hhm_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -MF CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o.d -o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pssm_io_handler.cc
[ 47%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/load_map.cc.o -MF CMakeFiles/ost_io.dir/img/load_map.cc.o.d -o CMakeFiles/ost_io.dir/img/load_map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/load_map.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dx_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_spi_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_situs_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_mrc_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dm3_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_tiff_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dat_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_ipl_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_jpk_handler.cc
[ 48%] Building CXX object modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_db_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/db/pymod/CMakeFiles/_ost_db.dir/wrap_db.cc.o -MF CMakeFiles/_ost_db.dir/wrap_db.cc.o.d -o CMakeFiles/_ost_db.dir/wrap_db.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/db/pymod/wrap_db.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_nanoscope_handler.cc
[ 48%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_png_handler.cc
[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -MF CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o.d -o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_df3_handler.cc
[ 50%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/db/_ost_db.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_db.dir/link.txt --verbose=1
[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/image_format.cc.o -MF CMakeFiles/ost_io.dir/img/image_format.cc.o.d -o CMakeFiles/ost_io.dir/img/image_format.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/image_format.cc
[ 50%] Building CXX object modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_IO -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/src/CMakeFiles/ost_io.dir/img/tiff_util.cc.o -MF CMakeFiles/ost_io.dir/img/tiff_util.cc.o.d -o CMakeFiles/ost_io.dir/img/tiff_util.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/tiff_util.cc
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_db.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/db/_ost_db.so CMakeFiles/_ost_db.dir/export_linear_db.cc.o CMakeFiles/_ost_db.dir/wrap_db.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/db/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/db/./__init__.pyc\",\"__init__.py\",doraise=True)"
[ 50%] Building CXX object modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_seq_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -MF CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o.d -o CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/wrap_seq_alg.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color="
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[ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o
[ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_compound.cc.o -MF CMakeFiles/_ost_conop.dir/export_compound.cc.o.d -o CMakeFiles/_ost_conop.dir/export_compound.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_compound.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -MF CMakeFiles/_ost_conop.dir/wrap_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/wrap_conop.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/wrap_conop.cc
[ 50%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_processor.cc.o -MF CMakeFiles/_ost_conop.dir/export_processor.cc.o.d -o CMakeFiles/_ost_conop.dir/export_processor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_processor.cc
[ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -MF CMakeFiles/_ost_conop.dir/export_heuristic.cc.o.d -o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_heuristic.cc
[ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -MF CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o.d -o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_amino_acids.cc
[ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_conop.cc.o -MF CMakeFiles/_ost_conop.dir/export_conop.cc.o.d -o CMakeFiles/_ost_conop.dir/export_conop.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_conop.cc
[ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_diag.cc.o -MF CMakeFiles/_ost_conop.dir/export_diag.cc.o.d -o CMakeFiles/_ost_conop.dir/export_diag.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_diag.cc
[ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -MF CMakeFiles/_ost_conop.dir/export_rule_based.cc.o.d -o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_rule_based.cc
[ 51%] Building CXX object modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_conop_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/conop/pymod/CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -MF CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o.d -o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/export_ring_finder.cc
[ 51%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/conop/_ost_conop.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_conop.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_conop.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/conop/_ost_conop.so CMakeFiles/_ost_conop.dir/wrap_conop.cc.o CMakeFiles/_ost_conop.dir/export_compound.cc.o CMakeFiles/_ost_conop.dir/export_processor.cc.o CMakeFiles/_ost_conop.dir/export_heuristic.cc.o CMakeFiles/_ost_conop.dir/export_amino_acids.cc.o CMakeFiles/_ost_conop.dir/export_conop.cc.o CMakeFiles/_ost_conop.dir/export_diag.cc.o CMakeFiles/_ost_conop.dir/export_rule_based.cc.o CMakeFiles/_ost_conop.dir/export_ring_finder.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_conop.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/conop/pymod/cleanup.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/conop/./cleanup.pyc\",\"cleanup.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 51%] Built target _ost_conop
make  -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build.make modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -MF CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o.d -o CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/wrap_gfx.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_scene.cc
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_gfx_node.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -MF CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_symmetry_node.cc
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_gfx_obj.cc
[ 51%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_entity.cc.o -MF CMakeFiles/_ost_gfx.dir/export_entity.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_entity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_entity.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_surface.cc.o -MF CMakeFiles/_ost_gfx.dir/export_surface.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_surface.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_surface.cc
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primitives.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_primitives.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -MF CMakeFiles/_ost_gfx.dir/export_primlist.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_primlist.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -MF CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_scene_observer.cc
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
                 from /usr/include/c++/14/bits/specfun.h:43,
                 from /usr/include/c++/14/cmath:3906,
                 from /usr/include/c++/14/math.h:36,
                 from /usr/include/python3.13/Python.h:22,
                 from /usr/include/boost/python/detail/wrap_python.hpp:178,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_surface.cc:19:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/color_by_def.hh:124:49:   required from here
  124 |   std::pair<float,float> minmax = std::make_pair(min,max);
      |                                   ~~~~~~~~~~~~~~^~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
                 from /usr/include/c++/14/bits/specfun.h:43,
                 from /usr/include/c++/14/cmath:3906,
                 from /usr/include/c++/14/math.h:36,
                 from /usr/include/python3.13/Python.h:22,
                 from /usr/include/boost/python/detail/wrap_python.hpp:178,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_gfx_obj.cc:19:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/color_by_def.hh:124:49:   required from here
  124 |   std::pair<float,float> minmax = std::make_pair(min,max);
      |                                   ~~~~~~~~~~~~~~^~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -MF CMakeFiles/_ost_gfx.dir/export_render_options.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_render_options.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/prim_list.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/wrap_gfx.cc:27:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:124:31: warning: 'virtual geom::AlignedCuboid ost::gfx::GfxObj::GetBoundingBox(bool) const' was hidden [-Woverloaded-virtual=]
  124 |   virtual geom::AlignedCuboid GetBoundingBox(bool use_tf=false) const;
      |                               ^~~~~~~~~~~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/wrap_gfx.cc:28:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_test_object.hh:40:31: note:   by 'virtual geom::AlignedCuboid ost::gfx::GfxTestObj::GetBoundingBox() const'
   40 |   virtual geom::AlignedCuboid GetBoundingBox() const;
      |                               ^~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_algobase.h:64,
                 from /usr/include/c++/14/bits/specfun.h:43,
                 from /usr/include/c++/14/cmath:3906,
                 from /usr/include/c++/14/math.h:36,
                 from /usr/include/python3.13/Python.h:22,
                 from /usr/include/boost/python/detail/wrap_python.hpp:178,
                 from /usr/include/boost/python/detail/prefix.hpp:13,
                 from /usr/include/boost/python/args.hpp:8,
                 from /usr/include/boost/python.hpp:11,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_entity.cc:19:
/usr/include/c++/14/bits/stl_pair.h: In instantiation of 'constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = float&; _T2 = float&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = float; typename decay<_Tp>::type = float; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = float; typename decay<_Tp2>::type = float]':
/build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/color_by_def.hh:124:49:   required from here
  124 |   std::pair<float,float> minmax = std::make_pair(min,max);
      |                                   ~~~~~~~~~~~~~~^~~~~~~~~
/usr/include/c++/14/bits/stl_pair.h:1132:5: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
 1132 |     make_pair(_T1&& __x, _T2&& __y)
      |     ^~~~~~~~~
[ 52%] Linking CXX shared library ../../../stage/lib/libost_io.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_io.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_io.so.2.10 -o ../../../stage/lib/libost_io.so.2.10.0 CMakeFiles/ost_io.dir/io_manager.cc.o CMakeFiles/ost_io.dir/convert.cc.o CMakeFiles/ost_io.dir/io_utils.cc.o CMakeFiles/ost_io.dir/mol/entity_io_crd_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pqr_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mae_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_reader.cc.o CMakeFiles/ost_io.dir/mol/entity_io_pdb_handler.cc.o CMakeFiles/ost_io.dir/mol/pdb_writer.cc.o CMakeFiles/ost_io.dir/mol/entity_io_sdf_handler.cc.o CMakeFiles/ost_io.dir/mol/entity_io_mmcif_handler.cc.o CMakeFiles/ost_io.dir/mol/sdf_reader.cc.o CMakeFiles/ost_io.dir/mol/sdf_writer.cc.o CMakeFiles/ost_io.dir/mol/save_entity.cc.o CMakeFiles/ost_io.dir/mol/load_entity.cc.o CMakeFiles/ost_io.dir/mol/surface_io_msms_handler.cc.o CMakeFiles/ost_io.dir/mol/load_surface.cc.o CMakeFiles/ost_io.dir/mol/chemdict_parser.cc.o CMakeFiles/ost_io.dir/mol/io_profile.cc.o CMakeFiles/ost_io.dir/mol/dcd_io.cc.o CMakeFiles/ost_io.dir/mol/star_parser.cc.o CMakeFiles/ost_io.dir/mol/star_writer.cc.o CMakeFiles/ost_io.dir/mol/mmcif_reader.cc.o CMakeFiles/ost_io.dir/mol/mmcif_info.cc.o CMakeFiles/ost_io.dir/mol/mmcif_writer.cc.o CMakeFiles/ost_io.dir/mol/pdb_str.cc.o CMakeFiles/ost_io.dir/mol/sdf_str.cc.o CMakeFiles/ost_io.dir/mol/mmcif_str.cc.o CMakeFiles/ost_io.dir/mol/stereochemical_params_reader.cc.o CMakeFiles/ost_io.dir/mol/omf.cc.o CMakeFiles/ost_io.dir/seq/clustal_io_handler.cc.o CMakeFiles/ost_io.dir/seq/load.cc.o CMakeFiles/ost_io.dir/seq/save.cc.o CMakeFiles/ost_io.dir/seq/fasta_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pir_io_handler.cc.o CMakeFiles/ost_io.dir/seq/promod_io_handler.cc.o CMakeFiles/ost_io.dir/seq/hhm_io_handler.cc.o CMakeFiles/ost_io.dir/seq/pssm_io_handler.cc.o CMakeFiles/ost_io.dir/img/load_map.cc.o CMakeFiles/ost_io.dir/img/map_io_dx_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_spi_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_situs_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_mrc_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dm3_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_tiff_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_dat_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_ipl_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_jpk_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_nanoscope_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_png_handler.cc.o CMakeFiles/ost_io.dir/img/map_io_df3_handler.cc.o CMakeFiles/ost_io.dir/img/image_format.cc.o CMakeFiles/ost_io.dir/img/tiff_util.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/li[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_color.cc
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -MF CMakeFiles/_ost_gfx.dir/export_gradient.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_gradient.cc
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -MF CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_color_ops.cc
bQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_io.so.2.10.0 ../../../stage/lib/libost_io.so.2.10 ../../../stage/lib/libost_io.so
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/chemdict_tool.dir/DependInfo.cmake "--color="
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[ 52%] Building CXX object modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/src/CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -MF CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o.d -o CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/src/chemdict_tool.cc
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -MF CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_glwin_base.cc
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -MF CMakeFiles/_ost_gfx.dir/export_exporter.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_exporter.cc
[ 52%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -MF CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_bitmap.cc
[ 53%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/seq/alg/_ost_seq_alg.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_seq_alg.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_seq_alg.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/seq/alg/_ost_seq_alg.so CMakeFiles/_ost_seq_alg.dir/wrap_seq_alg.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_seq_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/mat.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./mat.pyc\",\"mat.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/renumber.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./renumber.pyc\",\"renumber.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod/aaindex.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/seq/alg/./aaindex.pyc\",\"aaindex.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 53%] Built target _ost_seq_alg
make  -f modules/gui/src/CMakeFiles/ost_gui.dir/build.make modules/gui/src/CMakeFiles/ost_gui.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 53%] Generating tools/moc_tool_options_win.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp_parameters
[ 53%] Generating data_viewer/moc_argand.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp_parameters
[ 53%] Generating data_viewer/moc_data_viewer.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp_parameters
[ 53%] Generating data_viewer/moc_data_viewer_panel_base.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp_parameters
[ 55%] Generating data_viewer/moc_fft_panel.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp_parameters
[ 55%] Generating data_viewer/moc_info_panel.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp_parameters
[ 55%] Generating data_viewer/moc_null_overlay.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp_parameters
[ 55%] Generating data_viewer/moc_overlay_base.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp_parameters
[ 55%] Generating data_viewer/moc_overlay_manager_gui.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp_parameters
[ 55%] Generating data_viewer/moc_pointlist_overlay_base.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp_parameters
[ 56%] Building CXX object modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gfx_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gfx/pymod/CMakeFiles/_ost_gfx.dir/export_map.cc.o -MF CMakeFiles/_ost_gfx.dir/export_map.cc.o.d -o CMakeFiles/_ost_gfx.dir/export_map.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/export_map.cc
[ 56%] Generating messages/moc_log_reader.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp_parameters
[ 56%] Generating messages/moc_message_box_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp_parameters
[ 56%] Generating messages/moc_message_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp_parameters
[ 56%] Generating moc_dock_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp_parameters
[ 56%] Generating moc_file_browser.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_browser.cpp_parameters
[ 57%] Generating moc_file_type_dialog.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp_parameters
[ 57%] Generating moc_file_viewer.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_viewer.cpp_parameters
[ 57%] Generating moc_gl_canvas.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp_parameters
[ 57%] Generating moc_gl_win.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_win.cpp_parameters
[ 57%] Generating moc_gosty_app.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp_parameters
[ 57%] Generating moc_main.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp_parameters
[ 57%] Generating moc_main_area.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_area.cpp_parameters
[ 57%] Generating moc_main_window.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp_parameters
[ 57%] Generating moc_perspective.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_perspective.cpp_parameters
[ 57%] Generating moc_scene_menu.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_menu.cpp_parameters
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 57%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -MF CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/wrap_mol_alg.cc
[ 57%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_svd_superpose.cc
[ 58%] Generating moc_scene_selection.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_selection.cpp_parameters
[ 58%] Linking CXX executable ../../../stage/bin/chemdict_tool
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chemdict_tool.dir/link.txt --verbose=1
[ 58%] Generating moc_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget.cpp_parameters
[ 58%] Generating moc_widget_geom_handler.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp_parameters
[ 58%] Generating moc_widget_pool.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_pool.cpp_parameters
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/chemdict_tool.dir/link.d CMakeFiles/chemdict_tool.dir/chemdict_tool.cc.o -o ../../../stage/bin/chemdict_tool   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 58%] Generating panels/moc_bottom_bar.cpp
[ 58%] Built target chemdict_tool
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp_parameters
make  -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_mae_standalone.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_mae_standalone.dir/build.make modules/io/tests/CMakeFiles/test_mae_standalone.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 58%] Generating panels/moc_button_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp_parameters
[ 58%] Building CXX object modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -MF CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o.d -o CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_mae_standalone.cc
[ 58%] Generating panels/moc_button_box.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp_parameters
[ 60%] Generating panels/moc_drop_box.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp_parameters
[ 60%] Generating panels/moc_event_button.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp_parameters
[ 60%] Generating panels/moc_panel_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp_parameters
[ 60%] Generating panels/moc_panel_bar_widget_holder.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp_parameters
[ 60%] Generating panels/moc_panel_manager.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp_parameters
[ 60%] Generating panels/moc_panel_widget_container.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp_parameters
[ 60%] Generating panels/moc_side_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp_parameters
[ 60%] Generating panels/moc_splitter_panel_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp_parameters
[ 60%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_clash.cc
[ 60%] Generating panels/moc_tabbed_panel_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp_parameters
[ 60%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_trajectory_analysis.cc
[ 60%] Generating python_shell/moc_completer_base.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp_parameters
[ 60%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o
[ 60%] Generating python_shell/moc_gutter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_structure_analysis.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp_parameters
[ 60%] Generating python_shell/moc_main_thread_runner.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp_parameters
[ 60%] Generating python_shell/moc_output_redirector.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp_parameters
[ 60%] Generating python_shell/moc_path_completer.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp_parameters
[ 60%] Generating python_shell/moc_python_completer.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp_parameters
[ 61%] Generating python_shell/moc_python_interpreter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp_parameters
[ 61%] Generating python_shell/moc_python_interpreter_worker.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp_parameters
[ 61%] Generating python_shell/moc_python_namespace_tree_model.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp_parameters
[ 61%] Generating python_shell/moc_python_shell.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp_parameters
[ 61%] Generating python_shell/moc_python_shell_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp_parameters
[ 61%] Generating python_shell/moc_state.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp_parameters
[ 61%] Generating python_shell/moc_state_machine.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp_parameters
[ 61%] Generating python_shell/moc_text_logger.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp_parameters
[ 61%] Generating python_shell/moc_transition.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp_parameters
[ 61%] Generating python_shell/moc_transition_guard.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp_parameters
[ 62%] Generating scene_win/moc_context_menu.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp_parameters
[ 62%] Generating scene_win/moc_current_selection_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp_parameters
[ 62%] Generating scene_win/moc_custom_part_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp_parameters
[ 62%] Generating scene_win/moc_entity_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp_parameters
[ 62%] Generating scene_win/moc_entity_part_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp_parameters
[ 62%] Generating scene_win/moc_gfx_scene_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp_parameters
[ 62%] Generating scene_win/moc_label_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp_parameters
[ 62%] Generating scene_win/moc_render_mode_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp_parameters
[ 62%] Linking CXX executable ../../../stage/bin/test_mae_standalone
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_mae_standalone.dir/link.txt --verbose=1
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/wrap_mol_alg.cc:25:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 62%] Generating scene_win/moc_render_modes_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp_parameters
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_mae_standalone.dir/link.d CMakeFiles/test_mae_standalone.dir/test_mae_standalone.cc.o -o ../../../stage/bin/test_mae_standalone   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 62%] Built target test_mae_standalone
make  -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/lddt.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/lddt.dir/build.make modules/mol/alg/src/CMakeFiles/lddt.dir/build
[ 62%] Generating scene_win/moc_root_node.cpp
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp_parameters
[ 62%] Building CXX object modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/src/CMakeFiles/lddt.dir/lddt.cc.o -MF CMakeFiles/lddt.dir/lddt.cc.o.d -o CMakeFiles/lddt.dir/lddt.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/lddt.cc
[ 62%] Generating scene_win/moc_scene_node.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp_parameters
[ 63%] Generating scene_win/moc_scene_win.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp_parameters
[ 63%] Generating scene_win/moc_scene_win_model.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp_parameters
[ 63%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_contact_overlap.cc
[ 63%] Generating sequence_viewer/moc_align_properties_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp_parameters
[ 63%] Generating sequence_viewer/moc_alignment_view_object.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp_parameters
[ 63%] Generating sequence_viewer/moc_background_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp_parameters
[ 63%] Generating sequence_viewer/moc_base_row.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp_parameters
[ 63%] Generating sequence_viewer/moc_base_view_object.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp_parameters
[ 63%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_accessibility.cc
[ 63%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_sec_structure.cc
[ 63%] Generating sequence_viewer/moc_conservation_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp_parameters
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/lddt.cc:31:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 65%] Generating sequence_viewer/moc_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp_parameters
[ 65%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_non_standard.cc
[ 65%] Generating sequence_viewer/moc_secstr_row.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp_parameters
[ 65%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_molck.cc
[ 65%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_membrane.cc
[ 65%] Generating sequence_viewer/moc_seq_secstr_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp_parameters
[ 65%] Generating sequence_viewer/moc_seq_selection_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp_parameters
[ 65%] Generating sequence_viewer/moc_seq_text_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_delegate.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_model.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_row.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_search_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_table_view.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_view_object.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp_parameters
[ 65%] Generating sequence_viewer/moc_sequence_viewer.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp_parameters
[ 66%] Generating sequence_viewer/moc_tick_painter.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp_parameters
[ 66%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/gfx/_ost_gfx.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/gradients.xml /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/gradients.xml
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gfx.dir/link.txt --verbose=1
[ 66%] Generating sequence_viewer/moc_title_row.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp_parameters
[ 66%] Generating tools/moc_measure_tool.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp_parameters
[ 67%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_entity_to_density.cc
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_gfx.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/gfx/_ost_gfx.so CMakeFiles/_ost_gfx.dir/wrap_gfx.cc.o CMakeFiles/_ost_gfx.dir/export_scene.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_node.cc.o CMakeFiles/_ost_gfx.dir/export_symmetry_node.cc.o CMakeFiles/_ost_gfx.dir/export_gfx_obj.cc.o CMakeFiles/_ost_gfx.dir/export_entity.cc.o CMakeFiles/_ost_gfx.dir/export_surface.cc.o CMakeFiles/_ost_gfx.dir/export_primitives.cc.o CMakeFiles/_ost_gfx.dir/export_primlist.cc.o CMakeFiles/_ost_gfx.dir/export_scene_observer.cc.o CMakeFiles/_ost_gfx.dir/export_render_options.cc.o CMakeFiles/_ost_gfx.dir/export_color.cc.o CMakeFiles/_ost_gfx.dir/export_gradient.cc.o CMakeFiles/_ost_gfx.dir/export_color_ops.cc.o CMakeFiles/_ost_gfx.dir/export_glwin_base.cc.o CMakeFiles/_ost_gfx.dir/export_exporter.cc.o CMakeFiles/_ost_gfx.dir/export_bitmap.cc.o CMakeFiles/_ost_gfx.dir/export_map.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gfx.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./__init__.pyc\",\"__init__.py\",doraise=True)"
[ 67%] Generating tools/moc_tool.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool.cpp_parameters
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gfx/pymod/py_gfx_obj.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gfx/./py_gfx_obj.pyc\",\"py_gfx_obj.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 67%] Generating tools/moc_tool_bar.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp_parameters
[ 67%] Built target _ost_gfx
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake "--color="
[ 67%] Generating tools/moc_tool_manager.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp_parameters
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 67%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -MF CMakeFiles/ost_mol_mm.dir/forcefield.cc.o.d -o CMakeFiles/ost_mol_mm.dir/forcefield.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/forcefield.cc
[ 67%] Generating tools/moc_tool_option.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp_parameters
[ 67%] Generating tools/moc_tool_option_group.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp_parameters
[ 67%] Generating tools/moc_tool_options.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp_parameters
[ 67%] Generating tools/moc_tool_options_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp_parameters
make  -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/tools/molck /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tools/molck /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tools/molck/CMakeFiles/molck.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f tools/molck/CMakeFiles/molck.dir/build.make tools/molck/CMakeFiles/molck.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 68%] Building CXX object tools/molck/CMakeFiles/molck.dir/main.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tools/molck && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT tools/molck/CMakeFiles/molck.dir/main.cc.o -MF CMakeFiles/molck.dir/main.cc.o.d -o CMakeFiles/molck.dir/main.cc.o -c /build/reproducible-path/openstructure-2.10.0/tools/molck/main.cc
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_browser.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_browser.cpp
[ 68%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o
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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/lddt.dir/link.d CMakeFiles/lddt.dir/lddt.cc.o -o ../../../../stage/bin/lddt   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.10.0 ../../../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_db.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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[ 68%] Building CXX object modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_alg_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -MF CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o.d -o CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/export_gdt.cc
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_type_dialog.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_type_dialog.cpp
[ 68%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_file_viewer.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_file_viewer.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_canvas.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_canvas.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gl_win.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gl_win.cpp
[ 70%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o
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[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_menu.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_menu.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -MF CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_gosty_app.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty_app.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_area.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_area.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_area.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -MF CMakeFiles/ost_gui.dir/moc_perspective.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_perspective.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_perspective.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_dock_widget.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_dock_widget.cpp
[ 70%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -MF CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o.d -o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/buildingblock.cc
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -MF CMakeFiles/ost_gui.dir/moc_main_window.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_main_window.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main_window.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -MF CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_scene_selection.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_scene_selection.cpp
[ 70%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_geom_handler.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_geom_handler.cpp
[ 71%] Linking CXX executable ../../stage/bin/molck
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tools/molck && /usr/bin/cmake -E cmake_link_script CMakeFiles/molck.dir/link.txt --verbose=1
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -MF CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o.d -o CMakeFiles/ost_gui.dir/moc_widget_pool.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_widget_pool.cpp
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/molck.dir/link.d CMakeFiles/molck.dir/main.cc.o -o ../../stage/bin/molck   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../stage/lib/libost_io.so.2.10.0 ../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../stage/lib/libost_seq_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../stage/lib/libost_conop.so.2.10.0 ../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib/libost_mol.so.2.10.0 ../../stage/lib/libost_img_alg.so.2.10.0 ../../stage/lib/libost_img.so.2.10.0 ../../stage/lib/libost_info.so.2.10.0 ../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 71%] Built target molck
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_box_widget.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_box_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_message_widget.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_message_widget.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -MF CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o.d -o CMakeFiles/ost_gui.dir/messages/moc_log_reader.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/messages/moc_log_reader.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_align_properties_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_align_properties_painter.cpp
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:28,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_main.cpp:10:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver<BASE>::~WidgetStateSaver() [with BASE = QMainWindow]':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/main.hh:40:25:   required from here
   40 | class DLLEXPORT_OST_GUI GostyMainWindow : public WidgetStateSaver<QMainWindow>
      |                         ^~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
  323 |     if(dynamic_cast<QMainWindow* >(this)){
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/../../../../modules/gui/src/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
  263 | class WidgetStateSaver<BASE>: public BASE
      |       ^~~~~~~~~~~~~~~~~~~~~~
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_background_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_background_painter.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_row.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_row.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_conservation_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_conservation_painter.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_painter.cpp
[ 71%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_secstr_row.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_secstr_row.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_secstr_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_secstr_painter.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_selection_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_selection_painter.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_seq_text_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_seq_text_painter.cpp
[ 72%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/gromacs_block_modifiers.cc
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_delegate.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_delegate.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_model.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_model.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_row.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_row.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_search_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_search_bar.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_table_view.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_table_view.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_viewer.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_viewer.cpp
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_tick_painter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_tick_painter.cpp
[ 72%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/heuristic_block_modifiers.cc
[ 72%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_title_row.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_title_row.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_alignment_view_object.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_alignment_view_object.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_base_view_object.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_base_view_object.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/moc_sequence_view_object.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_main_thread_runner.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_main_thread_runner.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_completer_base.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_completer_base.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_gutter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_gutter.cpp
[ 73%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_output_redirector.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_output_redirector.cpp
[ 73%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/interaction.cc.o -MF CMakeFiles/ost_mol_mm.dir/interaction.cc.o.d -o CMakeFiles/ost_mol_mm.dir/interaction.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/interaction.cc
[ 75%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/simulation.cc.o -MF CMakeFiles/ost_mol_mm.dir/simulation.cc.o.d -o CMakeFiles/ost_mol_mm.dir/simulation.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/simulation.cc
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_path_completer.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_path_completer.cpp
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_completer.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_completer.cpp
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter.cpp
[ 75%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_interpreter_worker.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_interpreter_worker.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_namespace_tree_model.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_namespace_tree_model.cpp
[ 76%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/mol/alg/_ost_mol_alg.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_alg.dir/link.txt --verbose=1
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/../../../../../modules/gui/src/sequence_viewer/sequence_view_object.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/sequence_viewer/moc_sequence_view_object.cpp:10:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_python_shell_widget.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_python_shell_widget.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_text_logger.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_text_logger.cpp
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_mol_alg.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/mol/alg/_ost_mol_alg.so CMakeFiles/_ost_mol_alg.dir/wrap_mol_alg.cc.o CMakeFiles/_ost_mol_alg.dir/export_svd_superpose.cc.o CMakeFiles/_ost_mol_alg.dir/export_clash.cc.o CMakeFiles/_ost_mol_alg.dir/export_trajectory_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_structure_analysis.cc.o CMakeFiles/_ost_mol_alg.dir/export_contact_overlap.cc.o CMakeFiles/_ost_mol_alg.dir/export_accessibility.cc.o CMakeFiles/_ost_mol_alg.dir/export_sec_structure.cc.o CMakeFiles/_ost_mol_alg.dir/export_non_standard.cc.o CMakeFiles/_ost_mol_alg.dir/export_molck.cc.o CMakeFiles/_ost_mol_alg.dir/export_membrane.cc.o CMakeFiles/_ost_mol_alg.dir/export_entity_to_density.cc.o CMakeFiles/_ost_mol_alg.dir/export_biounit.cc.o CMakeFiles/_ost_mol_alg.dir/export_gdt.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_db.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/views.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./views.pyc\",\"views.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/superpose.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./superpose.pyc\",\"superpose.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/qsscoring.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscoring.pyc\",\"qsscoring.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/trajectory_analysis.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./trajectory_analysis.pyc\",\"trajectory_analysis.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/structure_analysis.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./structure_analysis.pyc\",\"structure_analysis.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/helix_kinks.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./helix_kinks.pyc\",\"helix_kinks.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/hbond.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./hbond.pyc\",\"hbond.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/lddt.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./lddt.pyc\",\"lddt.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/qsscore.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./qsscore.pyc\",\"qsscore.py\",doraise=True)"
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state_machine.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state_machine.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/scoring.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring.pyc\",\"scoring.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/chain_mapping.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./chain_mapping.pyc\",\"chain_mapping.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/stereochemistry.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./stereochemistry.pyc\",\"stereochemistry.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/dockq.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./dockq.pyc\",\"dockq.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/contact_score.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./contact_score.pyc\",\"contact_score.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/ligand_scoring.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring.pyc\",\"ligand_scoring.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/ligand_scoring_base.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_base.pyc\",\"ligand_scoring_base.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/ligand_scoring_scrmsd.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_scrmsd.pyc\",\"ligand_scoring_scrmsd.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/ligand_scoring_lddtpli.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./ligand_scoring_lddtpli.pyc\",\"ligand_scoring_lddtpli.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/bb_lddt.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./bb_lddt.pyc\",\"bb_lddt.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod/scoring_base.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/alg/./scoring_base.pyc\",\"scoring_base.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 76%] Built target _ost_mol_alg
make  -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod/CMakeFiles/_ost_io.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/pymod/CMakeFiles/_ost_io.dir/build.make modules/io/pymod/CMakeFiles/_ost_io.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 76%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/wrap_io.cc.o -MF CMakeFiles/_ost_io.dir/wrap_io.cc.o.d -o CMakeFiles/_ost_io.dir/wrap_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/wrap_io.cc
[ 76%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/modeller.cc.o -MF CMakeFiles/ost_mol_mm.dir/modeller.cc.o.d -o CMakeFiles/ost_mol_mm.dir/modeller.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/modeller.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_state.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_state.cpp
[ 76%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -MF CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o.d -o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/state_extractor.cc
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -MF CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o.d -o CMakeFiles/ost_gui.dir/python_shell/moc_transition_guard.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/python_shell/moc_transition_guard.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_bar.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_drop_box.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_drop_box.cpp
[ 76%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_manager.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_manager.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_bottom_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_bottom_bar.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_button_box.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_button_box.cpp
[ 77%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/observer.cc.o -MF CMakeFiles/ost_mol_mm.dir/observer.cc.o.d -o CMakeFiles/ost_mol_mm.dir/observer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/observer.cc
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_event_button.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_event_button.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_widget_container.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_widget_container.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_panel_bar_widget_holder.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_panel_bar_widget_holder.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_side_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_side_bar.cpp
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/stereochemical_params_reader.hh:23,
                 from /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/wrap_io.cc:35:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_splitter_panel_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_splitter_panel_bar.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -MF CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/panels/moc_tabbed_panel_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/panels/moc_tabbed_panel_bar.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_context_menu.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_context_menu.cpp
[ 77%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_current_selection_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_current_selection_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_custom_part_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_custom_part_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_gfx_scene_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_gfx_scene_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_label_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_label_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_entity_part_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_part_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_mode_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_mode_node.cpp
[ 78%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/system_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/system_creator.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_render_modes_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_render_modes_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_root_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_root_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_node.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_node.cpp
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win.cpp
[ 78%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/topology_creator.cc
[ 78%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -MF CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o.d -o CMakeFiles/ost_gui.dir/scene_win/moc_scene_win_model.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_scene_win_model.cpp
[ 78%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/topology.cc.o -MF CMakeFiles/ost_mol_mm.dir/topology.cc.o.d -o CMakeFiles/ost_mol_mm.dir/topology.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/topology.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/../../../../../modules/gui/src/scene_win/entity_node.hh:28,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/scene_win/moc_entity_node.cpp:10:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option_group.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option_group.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_bar.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_bar.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_option.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_option.cpp
[ 80%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -MF CMakeFiles/_ost_io.dir/export_pdb_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/export_pdb_io.cc
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_manager.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_manager.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_widget.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_widget.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_measure_tool.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_measure_tool.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -MF CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o.d -o CMakeFiles/ost_gui.dir/tools/moc_tool_options_win.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/tools/moc_tool_options_win.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_argand.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_argand.cpp
[ 80%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_fft_panel.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_fft_panel.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_info_panel.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_info_panel.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_manager_gui.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_manager_gui.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_data_viewer_panel_base.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_data_viewer_panel_base.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_null_overlay.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_null_overlay.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_overlay_base.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_overlay_base.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -MF CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o.d -o CMakeFiles/ost_gui.dir/data_viewer/moc_pointlist_overlay_base.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/data_viewer/moc_pointlist_overlay_base.cpp
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/thin_splitter.cc.o -MF CMakeFiles/ost_gui.dir/thin_splitter.cc.o.d -o CMakeFiles/ost_gui.dir/thin_splitter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/thin_splitter.cc
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/perspective.cc.o -MF CMakeFiles/ost_gui.dir/perspective.cc.o.d -o CMakeFiles/ost_gui.dir/perspective.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/perspective.cc
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_registry.cc.o -MF CMakeFiles/ost_gui.dir/widget_registry.cc.o.d -o CMakeFiles/ost_gui.dir/widget_registry.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/widget_registry.cc
[ 81%] Building CXX object modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_MOL_MM -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/steep.cc.o -MF CMakeFiles/ost_mol_mm.dir/steep.cc.o.d -o CMakeFiles/ost_mol_mm.dir/steep.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/steep.cc
[ 81%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_browser.cc.o -MF CMakeFiles/ost_gui.dir/file_browser.cc.o.d -o CMakeFiles/ost_gui.dir/file_browser.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_browser.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -MF CMakeFiles/ost_gui.dir/file_type_dialog.cc.o.d -o CMakeFiles/ost_gui.dir/file_type_dialog.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_type_dialog.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_viewer.cc.o -MF CMakeFiles/ost_gui.dir/file_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/file_viewer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_viewer.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main.cc.o -MF CMakeFiles/ost_gui.dir/main.cc.o.d -o CMakeFiles/ost_gui.dir/main.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/main.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_canvas.cc.o -MF CMakeFiles/ost_gui.dir/gl_canvas.cc.o.d -o CMakeFiles/ost_gui.dir/gl_canvas.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/gl_canvas.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/dock_widget.cc.o -MF CMakeFiles/ost_gui.dir/dock_widget.cc.o.d -o CMakeFiles/ost_gui.dir/dock_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/dock_widget.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_window.cc.o -MF CMakeFiles/ost_gui.dir/main_window.cc.o.d -o CMakeFiles/ost_gui.dir/main_window.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/main_window.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gl_win.cc.o -MF CMakeFiles/ost_gui.dir/gl_win.cc.o.d -o CMakeFiles/ost_gui.dir/gl_win.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/gl_win.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_menu.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_menu.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget.cc.o -MF CMakeFiles/ost_gui.dir/widget.cc.o.d -o CMakeFiles/ost_gui.dir/widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/widget.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/admin.cc.o -MF CMakeFiles/ost_gui.dir/admin.cc.o.d -o CMakeFiles/ost_gui.dir/admin.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/admin.cc
[ 82%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_pool.cc.o -MF CMakeFiles/ost_gui.dir/widget_pool.cc.o.d -o CMakeFiles/ost_gui.dir/widget_pool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/widget_pool.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_widget.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -MF CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o.d -o CMakeFiles/ost_gui.dir/messages/message_box_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_box_widget.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -MF CMakeFiles/ost_gui.dir/messages/log_reader.cc.o.d -o CMakeFiles/ost_gui.dir/messages/log_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/log_reader.cc
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(QWidget*)':
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_browser.cc:62:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
   62 |  model_(new QDirModel),
      |             ^~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_browser.cc:53:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
   73 |     QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
      |                                                                   ^~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_browser.cc: In constructor 'ost::gui::FileBrowser::FileBrowser(const QString&, QWidget*)':
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_browser.cc:102:13: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
  102 |  model_(new QDirModel),
      |             ^~~~~~~~~
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
   73 |     QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
      |                                                                   ^~~~~~~~~
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/align_properties_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/align_properties_painter.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_row.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_row.cc
[ 83%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -MF CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/export_mmcif_io.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/main.hh:28,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/gosty_app.hh:28,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/main.cc:19:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'ost::gui::WidgetStateSaver<BASE>::~WidgetStateSaver() [with BASE = QMainWindow]':
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/main.cc:70:69:   required from here
   70 |                                 GostyMainWindow::GetDefaultSize(), 0)
      |                                                                     ^
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:323:8: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
  323 |     if(dynamic_cast<QMainWindow* >(this)){
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
  263 | class WidgetStateSaver<BASE>: public BASE
      |       ^~~~~~~~~~~~~~~~~~~~~~
[ 83%] Linking CXX shared library ../../../../stage/lib/libost_mol_mm.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/AMBER03.dat /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/forcefields/AMBER03.dat
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh: In instantiation of 'void ost::gui::WidgetStateSaver<BASE>::set_state_() [with BASE = QMainWindow]':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:286:5:   required from 'ost::gui::WidgetStateSaver<BASE>::WidgetStateSaver(const QString&, QPoint, QSize, QWidget*) [with BASE = QMainWindow]'
  286 |     set_state_();
      |     ^~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/main.cc:70:69:   required from here
   70 |                                 GostyMainWindow::GetDefaultSize(), 0)
      |                                                                     ^
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:305:10: warning: the address of 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' will never be NULL [-Waddress]
  305 |       if(dynamic_cast<QMainWindow* >(this)){
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/widget_state_saver.hh:263:7: note: 'ost::gui::WidgetStateSaver<QMainWindow>::QMainWindow' declared here
  263 | class WidgetStateSaver<BASE>: public BASE
      |       ^~~~~~~~~~~~~~~~~~~~~~
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/CHARMM27.dat /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/forcefields/CHARMM27.dat
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/background_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/background_painter.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_mm.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/ost_mol_mm.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libost_mol_mm.so.2.10 -o ../../../../stage/lib/libost_mol_mm.so.2.10.0 CMakeFiles/ost_mol_mm.dir/forcefield.cc.o CMakeFiles/ost_mol_mm.dir/ff_reader.cc.o CMakeFiles/ost_mol_mm.dir/buildingblock.cc.o CMakeFiles/ost_mol_mm.dir/gromacs_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/heuristic_block_modifiers.cc.o CMakeFiles/ost_mol_mm.dir/interaction.cc.o CMakeFiles/ost_mol_mm.dir/simulation.cc.o CMakeFiles/ost_mol_mm.dir/modeller.cc.o CMakeFiles/ost_mol_mm.dir/state_extractor.cc.o CMakeFiles/ost_mol_mm.dir/observer.cc.o CMakeFiles/ost_mol_mm.dir/system_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology_creator.cc.o CMakeFiles/ost_mol_mm.dir/topology.cc.o CMakeFiles/ost_mol_mm.dir/steep.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libOpenMM.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E cmake_symlink_library ../../../../stage/lib/libost_mol_mm.so.2.10.0 ../../../../stage/lib/libost_mol_mm.so.2.10 ../../../../stage/lib/libost_mol_mm.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 83%] Built target ost_mol_mm
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/conservation_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/conservation_painter.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/secstr_row.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/secstr_row.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_secstr_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_secstr_painter.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_selection_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_selection_painter.cc
[ 83%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/seq_text_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_text_painter.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_delegate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_delegate.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_model.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_row.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_row.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/secstr_row.cc:29:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_search_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_search_bar.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_table_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_table_view.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_row.cc:29:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_viewer.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/tick_painter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/tick_painter.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.hh:33,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.cc:30:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/title_row.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/title_row.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/alignment_view_object.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/base_view_object.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_view_object.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -MF CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o.d -o CMakeFiles/ost_gui.dir/sequence_viewer/sequence_view_object.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.cc
[ 85%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/gosty_app.cc.o -MF CMakeFiles/ost_gui.dir/gosty_app.cc.o.d -o CMakeFiles/ost_gui.dir/gosty_app.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/gosty_app.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/main_area.cc.o -MF CMakeFiles/ost_gui.dir/main_area.cc.o.d -o CMakeFiles/ost_gui.dir/main_area.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/main_area.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -MF CMakeFiles/ost_gui.dir/widget_state_saver.cc.o.d -o CMakeFiles/ost_gui.dir/widget_state_saver.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/widget_state_saver.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.hh:32,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.cc:41:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_selection.cc.o -MF CMakeFiles/ost_gui.dir/scene_selection.cc.o.d -o CMakeFiles/ost_gui.dir/scene_selection.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_selection.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.cc:32:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -MF CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o.d -o CMakeFiles/ost_gui.dir/widget_geom_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/widget_geom_handler.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/file_loader.cc.o -MF CMakeFiles/ost_gui.dir/file_loader.cc.o.d -o CMakeFiles/ost_gui.dir/file_loader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/file_loader.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_bar.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/drop_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/drop_box.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/drop_box.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/bottom_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/bottom_bar.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/button_box.cc.o -MF CMakeFiles/ost_gui.dir/panels/button_box.cc.o.d -o CMakeFiles/ost_gui.dir/panels/button_box.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_box.cc
[ 86%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/event_button.cc.o -MF CMakeFiles/ost_gui.dir/panels/event_button.cc.o.d -o CMakeFiles/ost_gui.dir/panels/event_button.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/event_button.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh:31,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/gosty_app.cc:29:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh:32:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_manager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_manager.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_widget_container.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_widget_container.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -MF CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o.d -o CMakeFiles/ost_gui.dir/panels/panel_bar_widget_holder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar_widget_holder.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/side_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/side_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/side_bar.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/splitter_panel_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/splitter_panel_bar.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -MF CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o.d -o CMakeFiles/ost_gui.dir/panels/tabbed_panel_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/tabbed_panel_bar.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_selection.cc:28:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_selection.cc:29:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option_group.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_option.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_option.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_manager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_manager.cc
[ 87%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_win.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_win.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -MF CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o.d -o CMakeFiles/ost_gui.dir/tools/mouse_event.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/mouse_event.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -MF CMakeFiles/ost_gui.dir/tools/manipulator.cc.o.d -o CMakeFiles/ost_gui.dir/tools/manipulator.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/manipulator.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_options_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_widget.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -MF CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o.d -o CMakeFiles/ost_gui.dir/tools/tool_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_bar.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/selection_tool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/selection_tool.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/measure_tool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/measure_tool.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/gutter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/gutter.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/main_thread_runner.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/main_thread_runner.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/output_redirector.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/output_redirector.cc
[ 88%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/completer_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/completer_base.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/dir_model.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/path_completer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/path_completer.cc
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.cc: In constructor 'ost::gui::OstDirModel::OstDirModel(QObject*)':
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.cc:31:18: warning: 'QDirModel::QDirModel(QObject*)' is deprecated: Use QFileSystemModel [-Wdeprecated-declarations]
   31 |  QDirModel(parent)
      |                  ^
In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDirModel:1,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.cc:23:
/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdirmodel.h:73:67: note: declared here
   73 |     QT_DEPRECATED_VERSION_X_5_15("Use QFileSystemModel") explicit QDirModel(QObject *parent = nullptr);
      |                                                                   ^~~~~~~~~
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_context_parser.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_context_parser.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_completer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_completer.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_interpreter_worker.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter_worker.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_model.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_namespace_tree_model.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_namespace_tree_item.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_namespace_tree_item.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_widget.cc
[ 90%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_shell_text_document_layout.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_text_document_layout.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_tokenizer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_tokenizer.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/python_syntax_highlighter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_syntax_highlighter.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/shell_history.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/shell_history.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/string_literal_positions.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/string_literal_positions.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/text_logger.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/text_logger.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state_machine.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state_machine.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/state.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/state.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/state.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -MF CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o.d -o CMakeFiles/ost_gui.dir/python_shell/transition_guard.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition_guard.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/context_menu.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.cc
[ 91%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/current_selection_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/current_selection_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/custom_part_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/custom_part_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/label_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/label_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/entity_part_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_part_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/gfx_scene_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/gfx_scene_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_mode_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_mode_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/render_modes_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_modes_node.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/map_iso.hh:33,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.cc:31:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_node.hh:28,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.cc:34:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/custom_part_node.cc:24:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/root_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/root_node.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.cc
[ 92%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -MF CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o.d -o CMakeFiles/ost_gui.dir/scene_win/scene_win_model.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win_model.cc
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -MF CMakeFiles/ost_gui.dir/tools/map_tool.cc.o.d -o CMakeFiles/ost_gui.dir/tools/map_tool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/map_tool.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_mode_node.cc:21:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/argand.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/argand.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_part_node.cc:22:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer.cc
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel.cc
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel_base.cc
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/draw_overlay.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object_base.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:40,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win_model.cc:28:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/drawing_functions.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_modes_node.cc:25:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:62:16: warning: 'virtual void ost::gfx::GfxObj::Apply(ost::gfx::GfxNodeVisitor&, ost::gfx::GfxNodeVisitor::Stack)' was hidden [-Woverloaded-virtual=]
   62 |   virtual void Apply(GfxNodeVisitor& v, GfxNodeVisitor::Stack st);
      |                ^~~~~
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:294:8: note:   by 'ost::gfx::Entity::Apply'
  294 |   void Apply(const gfx::MapHandleColorOp& op, bool store=true);
      |        ^~~~~
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/fft_panel.cc
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/info_panel.cc
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/img2qt.cc
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.cc: In member function 'void ost::gui::SceneWin::RowsInserted(const QModelIndex&, int, int)':
/build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.cc:117:31: warning: 'QModelIndex QModelIndex::child(int, int) const' is deprecated: Use QAbstractItemModel::index [-Wdeprecated-declarations]
  117 |     model->select(parent.child(start,0),QItemSelectionModel::ClearAndSelect|QItemSelectionModel::Rows);
      |                   ~~~~~~~~~~~~^~~~~~~~~
In file included from /usr/include/aarch64-linux-gnu/qt5/QtCore/QModelIndex:1,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh:34,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.cc:26:
/usr/include/aarch64-linux-gnu/qt5/QtCore/qabstractitemmodel.h:455:20: note: declared here
  455 | inline QModelIndex QModelIndex::child(int arow, int acolumn) const
      |                    ^~~~~~~~~~~
[ 93%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/mask_overlay.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/null_overlay.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_gui.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay_base.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DOST_MODULE_OST_GUI -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -Dost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/src/CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -MF CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o.d -o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/viewer_normalizer.cc
[ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_omf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_omf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_omf_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/export_omf_io.cc
[ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_map_io.cc.o -MF CMakeFiles/_ost_io.dir/export_map_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_map_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/export_map_io.cc
[ 95%] Building CXX object modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_io_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/io/pymod/CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -MF CMakeFiles/_ost_io.dir/export_sdf_io.cc.o.d -o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/pymod/export_sdf_io.cc
[ 95%] Linking CXX shared library ../../../stage/lib/libost_gui.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gui.dir/link.txt --verbose=1
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CMakeFiles/ost_gui.dir/data_viewer/data_viewer_panel_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/draw_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/drawing_functions.cc.o CMakeFiles/ost_gui.dir/data_viewer/fft_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/info_panel.cc.o CMakeFiles/ost_gui.dir/data_viewer/img2qt.cc.o CMakeFiles/ost_gui.dir/data_viewer/mask_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/null_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager.cc.o CMakeFiles/ost_gui.dir/data_viewer/overlay_manager_gui.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay.cc.o CMakeFiles/ost_gui.dir/data_viewer/pointlist_overlay_base.cc.o CMakeFiles/ost_gui.dir/data_viewer/strategies.cc.o CMakeFiles/ost_gui.dir/data_viewer/viewer_normalizer.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.10.0 ../../../stage/lib/libost_io.so.2.10.0 ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_symlink_library ../../../stage/lib/libost_gui.so.2.10.0 ../../../stage/lib/libost_gui.so.2.10 ../../../stage/lib/libost_gui.so
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/rcc --name dngr --output /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/qrc_dngr.cpp /build/reproducible-path/openstructure-2.10.0/modules/gui/src/dngr.qrc
[ 95%] Generating moc_gosty.cpp
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/lib/qt5/bin/moc @/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty.cpp_parameters
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/gosty.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/gosty.cc.o -MF CMakeFiles/gosty.dir/gosty.cc.o.d -o CMakeFiles/gosty.dir/gosty.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/src/gosty.cc
[ 95%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/moc_gosty.cpp.o -MF CMakeFiles/gosty.dir/moc_gosty.cpp.o.d -o CMakeFiles/gosty.dir/moc_gosty.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/moc_gosty.cpp
[ 95%] Building CXX object modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gui/src/CMakeFiles/gosty.dir/qrc_dngr.cpp.o -MF CMakeFiles/gosty.dir/qrc_dngr.cpp.o.d -o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -c /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/qrc_dngr.cpp
[ 95%] Linking CXX executable ../../../stage/lib/openstructure/libexec/gosty
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gosty.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/gosty.dir/link.d CMakeFiles/gosty.dir/gosty.cc.o CMakeFiles/gosty.dir/moc_gosty.cpp.o CMakeFiles/gosty.dir/qrc_dngr.cpp.o -o ../../../stage/lib/openstructure/libexec/gosty   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.10.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] Built target gosty
[ 96%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/io/_ost_io.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_io.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_io.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/io/_ost_io.so CMakeFiles/_ost_io.dir/wrap_io.cc.o CMakeFiles/_ost_io.dir/export_pdb_io.cc.o CMakeFiles/_ost_io.dir/export_mmcif_io.cc.o CMakeFiles/_ost_io.dir/export_omf_io.cc.o CMakeFiles/_ost_io.dir/export_map_io.cc.o CMakeFiles/_ost_io.dir/export_sdf_io.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/io/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/io/pymod/remote.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./remote.pyc\",\"remote.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/io/pymod/repository.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/io/./repository.pyc\",\"repository.py\",doraise=True)"
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -MF CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o.d -o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_alignment_view.cc
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o
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[ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -MF CMakeFiles/_ost_gui.dir/wrap_gui.cc.o.d -o CMakeFiles/_ost_gui.dir/wrap_gui.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/wrap_gui.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_forcefield.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_message_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_message_widget.cc
[ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_gl_win.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_settings.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_tool.cc.o -MF CMakeFiles/_ost_gui.dir/export_tool.cc.o.d -o CMakeFiles/_ost_gui.dir/export_tool.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_tool.cc
[ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o
[ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_simulation.cc
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_openmm.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -MF CMakeFiles/_ost_gui.dir/export_py_shell.cc.o.d -o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_py_shell.cc
[ 96%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gosty.cc.o -MF CMakeFiles/_ost_gui.dir/export_gosty.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gosty.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_gosty.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_observers.cc
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_win.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_scene_win.cc
[ 96%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_sequence_viewer.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_perspective.cc.o -MF CMakeFiles/_ost_gui.dir/export_perspective.cc.o.d -o CMakeFiles/_ost_gui.dir/export_perspective.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_perspective.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -MF CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o.d -o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_sip_handler.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -MF CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o.d -o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_scene_selection.cc
[ 97%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_ff_reader.cc
[ 97%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_interaction.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_main_area.cc.o -MF CMakeFiles/_ost_gui.dir/export_main_area.cc.o.d -o CMakeFiles/_ost_gui.dir/export_main_area.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_main_area.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_panels.cc.o -MF CMakeFiles/_ost_gui.dir/export_panels.cc.o.d -o CMakeFiles/_ost_gui.dir/export_panels.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_panels.cc
In file included from /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_scene_selection.cc:23:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_node.hh:55:16: warning: 'virtual void ost::gfx::GfxNode::DeepSwap(ost::gfx::GfxNode&)' was hidden [-Woverloaded-virtual=]
   55 |   virtual void DeepSwap(GfxNode& n);
      |                ^~~~~~~~
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh:38,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/entity.hh:41,
                 from /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_scene_selection.cc:24:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/gfx_object.hh:58:16: note:   by 'virtual void ost::gfx::GfxObj::DeepSwap(ost::gfx::GfxObj&)'
   58 |   virtual void DeepSwap(GfxObj& go);
      |                ^~~~~~~~
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -MF CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o.d -o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_menu_bar.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_loader.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_file_loader.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_file_viewer.cc
[ 97%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_widget.cc.o -MF CMakeFiles/_ost_gui.dir/export_widget.cc.o.d -o CMakeFiles/_ost_gui.dir/export_widget.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_widget.cc
[ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_buildingblock.cc
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -MF CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o.d -o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_gl_canvas.cc
[ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_block_modifiers.cc
[ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_topology.cc
[ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -MF CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/export_modeller.cc
[ 98%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -MF CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o.d -o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/data_viewer_proxy.cc
[ 98%] Building CXX object modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_mol_mm_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -MF CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o.d -o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/wrap_mol_mm.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -MF CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o.d -o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_data_viewer.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_overlay.cc
[100%] Building CXX object modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -D_ost_gui_EXPORTS -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -fPIC -MD -MT modules/gui/pymod/CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -MF CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o.d -o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/export_overlay_manager.cc
[100%] Linking CXX shared module ../../../stage/lib/python3.13/dist-packages/ost/gui/_ost_gui.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/presets.xml /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/presets.xml
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/icons/color_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/color_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/icons/preset_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/preset_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/icons/render_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/render_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/icons/tool_icon.png /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/share/openstructure/scene/icons/tool_icon.png
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_gui.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_gui.dir/link.d -Wl,-z,relro -shared  -o ../../../stage/lib/python3.13/dist-packages/ost/gui/_ost_gui.so CMakeFiles/_ost_gui.dir/wrap_gui.cc.o CMakeFiles/_ost_gui.dir/export_alignment_view.cc.o CMakeFiles/_ost_gui.dir/export_message_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_win.cc.o CMakeFiles/_ost_gui.dir/export_tool.cc.o CMakeFiles/_ost_gui.dir/export_py_shell.cc.o CMakeFiles/_ost_gui.dir/export_gosty.cc.o CMakeFiles/_ost_gui.dir/export_scene_win.cc.o CMakeFiles/_ost_gui.dir/export_sequence_viewer.cc.o CMakeFiles/_ost_gui.dir/export_perspective.cc.o CMakeFiles/_ost_gui.dir/export_sip_handler.cc.o CMakeFiles/_ost_gui.dir/export_scene_selection.cc.o CMakeFiles/_ost_gui.dir/export_main_area.cc.o CMakeFiles/_ost_gui.dir/export_panels.cc.o CMakeFiles/_ost_gui.dir/export_menu_bar.cc.o CMakeFiles/_ost_gui.dir/export_file_loader.cc.o CMakeFiles/_ost_gui.dir/export_file_viewer.cc.o CMakeFiles/_ost_gui.dir/export_widget.cc.o CMakeFiles/_ost_gui.dir/export_gl_canvas.cc.o CMakeFiles/_ost_gui.dir/data_viewer_proxy.cc.o CMakeFiles/_ost_gui.dir/export_data_viewer.cc.o CMakeFiles/_ost_gui.dir/export_overlay.cc.o CMakeFiles/_ost_gui.dir/export_overlay_manager.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../stage/lib/libost_gui.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.10.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_options_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_options_widget.pyc\",\"color_options_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/color_select_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/color_select_widget.pyc\",\"color_select_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/combo_options_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/combo_options_widget.pyc\",\"combo_options_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/cpk_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/cpk_widget.pyc\",\"cpk_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/custom_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/custom_widget.pyc\",\"custom_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_editor_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_editor_widget.pyc\",\"gradient_editor_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_info_handler.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_info_handler.pyc\",\"gradient_info_handler.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_list_model.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_list_model.pyc\",\"gradient_list_model.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/gradient_preset_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/gradient_preset_widget.pyc\",\"gradient_preset_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/hsc_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/hsc_widget.pyc\",\"hsc_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_gradient_info_handler.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_gradient_info_handler.pyc\",\"immutable_gradient_info_handler.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/immutable_preset_info_handler.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/immutable_preset_info_handler.pyc\",\"immutable_preset_info_handler.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/init_inspector.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/init_inspector.pyc\",\"init_inspector.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/inspector_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/inspector_widget.pyc\",\"inspector_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/map_level_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/map_level_widget.pyc\",\"map_level_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset.pyc\",\"preset.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/remote.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/remote.pyc\",\"remote.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_list_model.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_list_model.pyc\",\"preset_editor_list_model.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_editor_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_editor_widget.pyc\",\"preset_editor_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_info_handler.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_info_handler.pyc\",\"preset_info_handler.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_list_model.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_list_model.pyc\",\"preset_list_model.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/preset_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/preset_widget.pyc\",\"preset_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_mode_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_mode_widget.pyc\",\"render_mode_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_op.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_op.pyc\",\"render_op.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/render_options_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/render_options_widget.pyc\",\"render_options_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_observer_impl.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_observer_impl.pyc\",\"scene_observer_impl.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/scene_selection_helper.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/scene_selection_helper.pyc\",\"scene_selection_helper.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/simple_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/simple_widget.pyc\",\"simple_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/sline_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/sline_widget.pyc\",\"sline_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/toolbar_options_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/toolbar_options_widget.pyc\",\"toolbar_options_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/trace_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/trace_widget.pyc\",\"trace_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/tube_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/tube_widget.pyc\",\"tube_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/uniform_color_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/uniform_color_widget.pyc\",\"uniform_color_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/visibility_op.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/visibility_op.pyc\",\"visibility_op.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/line_trace_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/line_trace_widget.pyc\",\"line_trace_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/wireframe_widget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/wireframe_widget.pyc\",\"wireframe_widget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/scene/query_editor.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/scene/query_editor.pyc\",\"query_editor.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/termuse.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/termuse.pyc\",\"termuse.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/superpositiondialog.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/superpositiondialog.pyc\",\"superpositiondialog.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/init.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/init.pyc\",\"init.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/dng/menu.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/dng/menu.pyc\",\"menu.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/init_context_menu.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_context_menu.pyc\",\"init_context_menu.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/init_menubar.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_menubar.pyc\",\"init_menubar.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/init_spacenav.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_spacenav.pyc\",\"init_spacenav.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/init_splash.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./init_splash.pyc\",\"init_splash.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/trajectory_viewer.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./trajectory_viewer.pyc\",\"trajectory_viewer.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/helpwidget.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./helpwidget.pyc\",\"helpwidget.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/table.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./table.pyc\",\"table.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/gui/pymod/gosty_startup.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/gui/./gosty_startup.pyc\",\"gosty_startup.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[100%] Built target _ost_gui
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost_config
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/bin/ost
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/bin/dng
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/ost_startup.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/scripts/dng_startup.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/dng_startup.py
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[100%] Built target ost_scripts
[100%] Linking CXX shared module ../../../../stage/lib/python3.13/dist-packages/ost/mol/mm/_ost_mol_mm.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_ost_mol_mm.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_ost_mol_mm.dir/link.d -Wl,-z,relro -shared  -o ../../../../stage/lib/python3.13/dist-packages/ost/mol/mm/_ost_mol_mm.so CMakeFiles/_ost_mol_mm.dir/export_forcefield.cc.o CMakeFiles/_ost_mol_mm.dir/export_settings.cc.o CMakeFiles/_ost_mol_mm.dir/export_simulation.cc.o CMakeFiles/_ost_mol_mm.dir/export_openmm.cc.o CMakeFiles/_ost_mol_mm.dir/export_observers.cc.o CMakeFiles/_ost_mol_mm.dir/export_ff_reader.cc.o CMakeFiles/_ost_mol_mm.dir/export_interaction.cc.o CMakeFiles/_ost_mol_mm.dir/export_buildingblock.cc.o CMakeFiles/_ost_mol_mm.dir/export_block_modifiers.cc.o CMakeFiles/_ost_mol_mm.dir/export_topology.cc.o CMakeFiles/_ost_mol_mm.dir/export_modeller.cc.o CMakeFiles/_ost_mol_mm.dir/wrap_mol_mm.cc.o   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib: ../../../../stage/lib/libost_mol_mm.so.2.10.0 /usr/lib/aarch64-linux-gnu/libpython3.13.so /usr/lib/aarch64-linux-gnu/libboost_python313.so.1.83.0 ../../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libOpenMM.so
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/__init__.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./__init__.pyc\",\"__init__.py\",doraise=True)"
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod && /usr/bin/python3 -c "import py_compile;py_compile.compile(\"/build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod/antechamber.py\",\"/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/mol/mm/./antechamber.pyc\",\"antechamber.py\",doraise=True)"
make[3]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[100%] Built target _ost_mol_mm
make[2]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
   dh_auto_test
	cd obj-aarch64-linux-gnu && make -j12 check ARGS\+=--verbose ARGS\+=-j12
make[1]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/openstructure-2.10.0 -B/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 check
make[2]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/openstructure-2.10.0 -B/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/CMakeFiles 94
make  -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all
make[3]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_startup.py.dir/build.make scripts/CMakeFiles/subst_ost_startup.py.dir/depend
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_startup.py.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost_config.dir/DependInfo.cmake "--color="
make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/depend
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_ost.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost_startup.py.in -DOUT_FILE=ost_startup.py -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/subst_dng.dir/DependInfo.cmake "--color="
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/subst_ost_config.dir/build.make scripts/CMakeFiles/subst_ost_config.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost_config.in -DOUT_FILE=ost_config -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
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make  -f scripts/CMakeFiles/subst_ost.dir/build.make scripts/CMakeFiles/subst_ost.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/ost.in -DOUT_FILE=ost -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/bin
make  -f scripts/CMakeFiles/subst_dng.dir/build.make scripts/CMakeFiles/subst_dng.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/openstructure-2.10.0/scripts/dng.in -DOUT_FILE=dng -DBUILD_TYPE=Release -DPython_EXECUTABLE=/usr/bin/python3 -DPython_VERSION=3.13.3 -DLIBDIR=lib -DLIBEXEC_PATH=lib/openstructure/libexec -DPYTHON_MODULE_PATH=python3.13/dist-packages/ -P /build/reproducible-path/openstructure-2.10.0/cmake_support/substitute.cmake
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make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target subst_ost_startup.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target subst_ost
[  0%] Built target subst_ost_config
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E make_directory /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests
[  0%] Built target subst_dng
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target create_stage
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg_headers.dir/DependInfo.cmake "--color="
make  -f modules/geom/src/CMakeFiles/ost_geom_headers.dir/build.make modules/geom/src/CMakeFiles/ost_geom_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom_headers.dir/DependInfo.cmake "--color="
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config_headers.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base_headers.dir/DependInfo.cmake "--color="
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make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./alignment_opts.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./alignment_opts.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/export_helper/vector.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/export_helper/vector.hh
make  -f modules/config/CMakeFiles/ost_config_headers.dir/build.make modules/config/CMakeFiles/ost_config_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./base.hh
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info_headers.dir/DependInfo.cmake "--color="
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base_headers.dir/build.make modules/base/src/CMakeFiles/ost_base_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./def.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./def.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/generic_property_def.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/generic_property_def.hh
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./clip_alignment.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./clip_alignment.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./config.hh
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop_headers.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/info/src/CMakeFiles/ost_info_headers.dir/build.make modules/info/src/CMakeFiles/ost_info_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./conservation.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./conservation.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info.hh
make  -f modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/pair_to_tuple_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/pair_to_tuple_conv.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/pointer_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/pointer_iterator.hh
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./exc.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./exc.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db_headers.dir/DependInfo.cmake "--color="
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/depend
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_group.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_error.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_prediction_score.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_prediction_score.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./dllexport.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/export_helper/vec_to_list_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/export_helper/vec_to_list_conv.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl.hh
make  -f modules/conop/src/CMakeFiles/ost_conop_headers.dir/build.make modules/conop/src/CMakeFiles/ost_conop_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./conop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./conop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_prop.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./contact_weight_matrix.hh
make  -f modules/img/base/src/CMakeFiles/ost_img_headers.dir/build.make modules/img/base/src/CMakeFiles/ost_img_headers.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./geom.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./geom.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/test_utils/compare_files.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/test_utils/compare_files.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/raster_image/raster_image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/raster_image/raster_image.hh
make  -f modules/db/src/CMakeFiles/ost_db_headers.dir/build.make modules/db/src/CMakeFiles/ost_db_headers.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./distance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./distance_map.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_wrap.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_wrap.hh
make  -f modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/config/./version.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./version.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./generic_property.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./generic_property.hh
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./processor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./processor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_impl_fw.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./sqlite_conv.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./sqlite_conv.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./integrity_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./integrity_error.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/dispatch.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/dispatch.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/atom_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/atom_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./entropy.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./entropy.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat2.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat2.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_impl_fw.hh
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./anisotropic.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./anisotropic.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./global_align.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./global_align.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat3.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat3.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./amino_acids.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./amino_acids.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./invalid_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./invalid_handle.hh
[  0%] Built target ost_config_headers
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_handle.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src/CMakeFiles/ost_gui_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./linear_indexer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./linear_indexer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./auto_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./auto_correlate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_gen_s.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_gen_s.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./ptr_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./ptr_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./ins_del.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./ins_del.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./mat4.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./mat4.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gui/src/CMakeFiles/ost_gui_headers.dir/build.make modules/gui/src/CMakeFiles/ost_gui_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./diag.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./diag.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clear.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clear.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/chain_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/chain_impl_fw.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_iso_spec.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_iso_spec.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./binary_container.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./binary_container.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./log.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/impl/sequence_list_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/impl/sequence_list_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_item.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_item.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./log_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./log_sink.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/db/src/./extract_data_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/db/./extract_data_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./local_align.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./local_align.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_list.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_base_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./clip_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./clip_min_max.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/connector_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/connector_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./model_check.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./model_check.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_def.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_def.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec2.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec2.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./conjugate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./conjugate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/dihedral.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/dihedral.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./profile.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./profile.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./merge_pairwise_alignments.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./merge_pairwise_alignments.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_factory.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./convolute.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./convolute.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./heuristic.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./heuristic.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec3.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec3.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./alignment_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./alignment_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_bar.hh
[  0%] Built target ost_db_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./correlate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound.hh
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./dyn_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./dyn_cast.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec4.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec4.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./pair_subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_path.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_path.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/entity_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/entity_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/selection_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/selection_tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./cross_correlate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./cross_correlate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_frequency_domain.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_set.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_set.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat_op.hh
make  -f modules/io/src/CMakeFiles/ost_io_headers.dir/build.make modules/io/src/CMakeFiles/ost_io_headers.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./semiglobal_align.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./semiglobal_align.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./density_slice.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./density_slice.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/chemdict_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_half_frequency_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_half_frequency_domain.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./stdint.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./sequence_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./sequence_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./dft.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./dft.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/fragment_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/fragment_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat2_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_identity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_identity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./stdint_msc.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./stdint_msc.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/measure_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/measure_tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_region.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_region.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fft.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fft.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./sequence_similarity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./sequence_similarity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./info_verbose_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./info_verbose_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fftw_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fftw_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fill.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fill.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat3_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_spatial_domain.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_spatial_domain.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./rule_based.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./rule_based.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_ast_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_ast_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/star_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_option.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_option.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./range.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./range.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vecmat4_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vecmat4_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./filter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./filter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./variance_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./variance_map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./minimal_compound_lib.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./minimal_compound_lib.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./circular_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./circular_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./aligned_column_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./aligned_column_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fourier_filters.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fourier_filters.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_contact_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_contact_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./geom_info_conversion.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./geom_info_conversion.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./constants.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./constants.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_info.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_info.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/map_octree.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/map_octree.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_gradient_magnitude.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_gradient_magnitude.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./data/default_pair_subst_weight_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./default_pair_subst_weight_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./units.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./units.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./compound_lib_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./compound_lib_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/query_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/query_impl_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/manipulator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/manipulator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./message.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./message.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/octree_isocont.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/octree_isocont.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/info/src/./item_type_cast.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/info/./item_type_cast.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/conop/src/./ring_finder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/conop/./ring_finder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_pseudo_counts.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_pseudo_counts.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./invalid_sequence.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./invalid_sequence.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_algorithm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./platform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./platform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./gaussian_laplacian.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./gaussian_laplacian.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cartoon_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cartoon_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/tool_options_win.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/tool_options_win.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./hmm_score.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./hmm_score.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/io_profile.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/io_profile.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./string_ref.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./string_ref.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/residue_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/residue_impl_fw.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/image_state_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/image_state_visitor_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./highest_peak_search_3d.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./highest_peak_search_3d.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/mouse_event.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/mouse_event.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./views_from_sequences.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./views_from_sequences.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/custom_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/custom_renderer.hh
[  0%] Built target ost_info_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/cpk_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/cpk_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/dcd_io.hh
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/debug_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/debug_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src/./wrap_parasail.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/alg/./wrap_parasail.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/tools/map_tool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/tools/map_tool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./pod_vector.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./pod_vector.hh
[  0%] Built target ost_conop_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src/./profile_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/seq/./profile_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_crd_handler.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./svd_superpose.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./svd_superpose.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/surface_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/surface_impl_fw.hh
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/simple_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/simple_renderer.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/align_properties_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/align_properties_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./histogram.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./histogram.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/index.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/index.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pqr_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./fixed_string.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./fixed_string.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/sline_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/sline_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite2_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite2_op.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./module_config.hh
[  0%] Built target ost_seq_headers
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  0%] Built target ost_seq_alg_headers
make  -f modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings_headers.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/bindings/src/./wrap_tmalign.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/bindings/./wrap_tmalign.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/image_state/value_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/image_state/value_holder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./line_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mae_handler.hh
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/impl/torsion_impl_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/impl/torsion_impl_fw.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/config/CMakeFiles/ost_config.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./algorithm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./local_sigma_threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./local_sigma_threshold.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./composite3_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./composite3_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_mmcif_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/line_trace_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/line_trace_renderer.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./tri_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./tri_matrix.hh
make  -f modules/config/CMakeFiles/ost_config.dir/build.make modules/config/CMakeFiles/ost_config.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/background_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/background_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./mask_image.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./circle_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./circle_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_structure_segments.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_structure_segments.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/config/CMakeFiles/ost_config.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build.make modules/mol/mm/src/CMakeFiles/ost_mol_mm_headers.dir/build
[  0%] Built target ost_bindings_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./negate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./negate.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./forcefield.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./forcefield.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./aligned_cuboid.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./aligned_cuboid.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/conservation_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/conservation_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./boost_filesystem_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./boost_filesystem_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer_factory.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./composite_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./composite_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/backbone_trace.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/backbone_trace.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./local_dist_diff_test.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./local_dist_diff_test.hh
[  0%] Built target ost_config
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./vec_mat_predicates.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./vec_mat_predicates.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/base/src/./paged_array.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/./paged_array.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_detail.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_detail.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./normalizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_algorithm.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_algorithm.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_test_common.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_test_common.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./ff_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./ff_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_pdb_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/secstr_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/secstr_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_linear.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_linear.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./quat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./quat.hh
[  0%] Built target ost_base_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./atom_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./atom_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./distance_rmsd_test.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./distance_rmsd_test.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_log.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_log.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_secstr_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_secstr_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./buildingblock.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./buildingblock.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./point_cloud.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./point_cloud.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data_types.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data_types.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/trace_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/trace_renderer_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./superpose_frames.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./superpose_frames.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_selection_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_selection_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/geom/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/geom/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/entity_io_sdf_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./block_modifiers.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./data.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./data.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./norm_od.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./norm_od.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/connect_renderer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/connect_renderer_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bond_table.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bond_table.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/seq_text_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/seq_text_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./filter_clashes.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./filter_clashes.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./gromacs_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./gromacs_block_modifiers.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./debug.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./debug.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./construct_cbeta.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./construct_cbeta.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/mapped_property.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/mapped_property.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./power_spectrum.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./power_spectrum.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_delegate.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_delegate.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./clash_score.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./clash_score.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./heuristic_block_modifiers.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./heuristic_block_modifiers.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./dllexport.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./dllexport.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_model.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_model.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/entity_renderer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/entity_renderer_fw.hh
[  0%] Built target ost_geom_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./trajectory_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./trajectory_analysis.hh
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./randomize.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./randomize.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./interaction.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./interaction.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_writer.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/src/CMakeFiles/ost_geom.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_iterator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_iterator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./structure_analysis.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./structure_analysis.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/save_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./settings.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./settings.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/tabulated_trig.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/tabulated_trig.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./extent.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./extent.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_search_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_search_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/impl/fast_spheres.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/impl/fast_spheres.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./simulation.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./simulation.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./smooth_mask_image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./smooth_mask_image.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_factory.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_factory.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./pdbize.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./pdbize.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chain_type.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chain_type.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./modeller.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./modeller.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_table_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_table_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chem_class.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_class.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./adjacency_bitmap.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./adjacency_bitmap.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_viewer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/load_surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./state_extractor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./state_extractor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./chem_type.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./chem_type.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/surface_io_msms_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./consistency_checks.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./consistency_checks.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/custom_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/custom_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_accumulator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_accumulator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cpk_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cpk_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_group.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_group.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./contact_overlap.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./contact_overlap.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/tick_painter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/tick_painter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./system_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./system_creator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/pdb_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./stat_min_max.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./stat_min_max.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/simple_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/simple_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./domain_find.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./domain_find.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology_creator.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology_creator.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/title_row.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/title_row.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/sdf_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./threshold.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./threshold.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_list.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/mmcif_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/alignment_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/alignment_view_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_source.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transcendentals.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transcendentals.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/sline_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/sline_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./index.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./index.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./similarity_matrix.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./similarity_matrix.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/base_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/base_view_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./in_mem_coord_source.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./in_mem_coord_source.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./accessibility.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./accessibility.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image_state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image_state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/stereochemical_params_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/line_trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/line_trace_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./topology.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./topology.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./image.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./image.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./sec_struct.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./sec_struct.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./inverted_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./inverted_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transform_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transform_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/sequence_viewer/sequence_view_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/sequence_viewer/sequence_view_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./coord_frame.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./coord_frame.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/mol/omf.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src/./steep.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mm/./steep.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/cartoon_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/cartoon_render_options.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./nonstandard.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./nonstandard.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/load_map.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/main_thread_runner.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/main_thread_runner.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./map.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./editor_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/render_options/trace_render_options.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/render_options/trace_render_options.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_transform.hh
make  -f modules/geom/src/CMakeFiles/ost_geom.dir/build.make modules/geom/src/CMakeFiles/ost_geom.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/output_redirector.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/output_redirector.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_df3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./molck.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./molck.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base_fw.hh
[  0%] Built target ost_mol_mm_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/color_op.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/geom/src/CMakeFiles/ost_geom.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_mirror.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_mirror.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/completer_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/completer_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_element_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_element_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/image_format.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./editor_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./editor_type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./find_membrane.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./find_membrane.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./alg_shift.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./alg_shift.hh
[  1%] Built target ost_geom
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dx_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/by_chain_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/by_chain_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./mol.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./mol.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/src/CMakeFiles/ost_base.dir/DependInfo.cmake "--color="
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/dir_model.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/dir_model.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./entity_to_density.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./entity_to_density.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/pymod/CMakeFiles/_ost_geom.dir/DependInfo.cmake "--color="
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./biounit.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./biounit.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./discrete_shrink.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./discrete_shrink.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/uniform_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/uniform_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_spi_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/gutter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/gutter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_situs_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src/./gdt.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/./gdt.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformation_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformation_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/path_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/path_completer.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_mrc_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./transformations.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./transformations.hh
[  1%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/entity_view_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/entity_view_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./normalizer_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./normalizer_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_context_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_context_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_composite3.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  1%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_composite2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_composite2.cc
[  2%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/src/CMakeFiles/ost_base.dir/build.make modules/base/src/CMakeFiles/ost_base.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_observer_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_observer_fw.hh
[  2%] Built target ost_mol_alg_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./null_data.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./null_data.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_mat2.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./fractional_shift.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./fractional_shift.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/basic_gradient_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/basic_gradient_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dat_handler.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/base/src/CMakeFiles/ost_base.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_completer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_completer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_ipl_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./observable.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./observable.hh
[  3%] Built target ost_base
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/gradient_level_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/gradient_level_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_property_mapper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_property_mapper.hh
[  3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_mat3.cc
make  -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/src/CMakeFiles/ost_info.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_jpk_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./paste_impl.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./paste_impl.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/color_ops/map_handle_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./polar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./polar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./line_average.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./line_average.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./peak.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./peak.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src/./rscrosscorr.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/alg/./rscrosscorr.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_nanoscope_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_pass.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_pass.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_widget.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_tokenizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_tokenizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./phase.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./phase.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_png_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./entity_visitor_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./entity_visitor_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./bitmap_io.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./bitmap_io.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_syntax_highlighter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_syntax_highlighter.hh
[  3%] Built target ost_img_alg_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./collada_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./collada_exporter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./handle_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./handle_type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_dm3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./physical_units.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./physical_units.hh
[  3%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_mat4.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_mat4.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/geom/pymod/CMakeFiles/_ost_geom.dir/build.make modules/geom/pymod/CMakeFiles/_ost_geom.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/text_logger.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/text_logger.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/map_io_tiff_handler.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter.hh
make  -f modules/info/src/CMakeFiles/ost_info.dir/build.make modules/info/src/CMakeFiles/ost_info.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./pixel_sampling.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./pixel_sampling.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./ics_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./ics_editor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./color.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_interpreter_worker.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_interpreter_worker.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/info/src/CMakeFiles/ost_info.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./point_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point_list.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/geom/pymod/CMakeFiles/_ost_geom.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./not_connected_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./not_connected_error.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/tiff_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/python_shell_text_document_layout.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/python_shell_text_document_layout.hh
[  4%] Built target ost_info
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/img/jpk_util.hh
[  6%] Built target _ost_geom
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./property_id.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./property_id.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/shell_history.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/shell_history.hh
make  -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/depend
[  6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_op2.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./entity_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./entity_fw.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/pymod/CMakeFiles/_ost_base.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/sequence_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./point.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./point.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_error.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_error.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/fasta_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state_machine.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state_machine.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./polygon_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./polygon_mask.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pir_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./progress.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./progress.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/state.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/state.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/promod_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./size.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./size.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./spherical_mask.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./spherical_mask.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/pymod/CMakeFiles/_ost_base.dir/build.make modules/base/pymod/CMakeFiles/_ost_base.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/profile_io_handler.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/base/pymod/CMakeFiles/_ost_base.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/python_shell/transition_guard.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/python_shell/transition_guard.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_fw.hh
[  6%] Built target _ost_base
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_prop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./residue_view.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./residue_view.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_node_visitor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_node_visitor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/hhm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_bar.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/info/pymod/CMakeFiles/_ost_info.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./util.cc /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./sec_structure.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./sec_structure.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./spatial_organizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./spatial_organizer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/drop_box.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/drop_box.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/pssm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./util.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/info/pymod/CMakeFiles/_ost_info.dir/build.make modules/info/pymod/CMakeFiles/_ost_info.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/info/pymod/CMakeFiles/_ost_info.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/clustal_io_handler.hh
[  6%] Built target _ost_info
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_object_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_object_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/load.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./value_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./value_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_builder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_builder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./vecmat.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./vecmat.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/bottom_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/bottom_bar.hh
[  6%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_prim.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_prim.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/seq/save.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_op3.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./builder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./builder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/button_box.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/button_box.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_sink.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_sink.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./symmetry_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./symmetry_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/img/base/src/./mask_info_convert.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/img/./mask_info_convert.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/event_button.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/event_button.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gfx_test_object.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gfx_test_object.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glwin_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glwin_base.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./surface_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./surface_prop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./input.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./input.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./binary_data_source.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./binary_data_source.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_widget_container.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_widget_container.hh
[  6%] Built target ost_img_headers
make  -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./torsion_handle.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./torsion_handle.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./prim_list.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./prim_list.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/src/CMakeFiles/ost_img.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/panel_bar_widget_holder.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/panel_bar_widget_holder.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transfer_connectivity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transfer_connectivity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/side_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/side_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./query_view_wrapper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./query_view_wrapper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./selection.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./selection.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./container_serialization.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./container_serialization.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/splitter_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/splitter_panel_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./swap_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./swap_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_type_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_type_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/panels/tabbed_panel_bar.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/panels/tabbed_panel_bar.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_utils.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_utils.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./io_exception.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_exception.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./texture.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./texture.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/context_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/context_menu.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./view_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./view_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/current_selection_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/current_selection_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./convert.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./convert.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./xcs_editor.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./xcs_editor.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/custom_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/custom_part_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./converting_streams.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./converting_streams.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./vertex_array_helper.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./vertex_array_helper.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./formatted_line.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./formatted_line.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./bounding_box.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./bounding_box.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./scene_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./scene_observer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/chemdict_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./chemdict_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gl_include.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gl_include.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./transform.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./transform.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/entity_part_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/entity_part_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_parser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_parser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./glext_include.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./glext_include.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/gfx_scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/gfx_scene_node.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/star_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./star_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./render_mode.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./render_mode.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/label_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/label_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./material.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./material.hh
[  6%] Built target ost_mol_headers
make  -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/src/CMakeFiles/ost_mol.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/root_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/root_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_mode_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_mode_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gradient_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gradient_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_info.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_info.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/render_modes_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/render_modes_node.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_node.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_node.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/src/CMakeFiles/ost_img.dir/build.make modules/img/base/src/CMakeFiles/ost_img.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/io_profile.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./io_profile.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./primitives.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./primitives.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/scene_win/scene_win_model.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/scene_win/scene_win_model.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/dcd_io.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./dcd_io.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/base/src/CMakeFiles/ost_img.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[  9%] Built target ost_img
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./povray.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./povray.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_crd_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_crd_handler.hh
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/src/CMakeFiles/ost_img_alg.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_pqr_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pqr_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/message_box_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/message_box_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/messages/log_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/messages/log_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_mae_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mae_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./exporter_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./exporter_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_mmcif_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_mmcif_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/argand.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/argand.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./gost_exporter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./gost_exporter.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./color_ops/map_handle_color_op.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_handle_color_op.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_iso.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_pdb_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_pdb_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_writer.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_slab.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_slab.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/data_viewer_panel_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/data_viewer_panel_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/entity_io_sdf_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./entity_io_sdf_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gfx/src/./map_iso_prop.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gfx/./map_iso_prop.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/draw_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/draw_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_reader.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/drawing_functions.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/drawing_functions.hh
[  9%] Built target ost_gfx_headers
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_writer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_writer.hh
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/pymod/CMakeFiles/_ost_img.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/fft_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/fft_panel.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/save_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/info_panel.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/info_panel.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_entity.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_entity.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/img2qt.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/img2qt.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/mask_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/mask_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/load_surface.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_surface.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/null_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/null_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/surface_io_msms_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./surface_io_msms_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/pdb_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pdb_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/sdf_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sdf_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_base_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_base_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/mmcif_str.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./mmcif_str.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/stereochemical_params_reader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./stereochemical_params_reader.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./mol/omf.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./omf.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_gui.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_gui.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/sequence_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./sequence_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/overlay_manager_observer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/overlay_manager_observer.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/pymod/CMakeFiles/_ost_img.dir/build.make modules/img/base/pymod/CMakeFiles/_ost_img.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/fasta_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./fasta_io_handler.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/base/pymod/CMakeFiles/_ost_img.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/pointlist_overlay_base.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/pointlist_overlay_base.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pir_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pir_io_handler.hh
[ 10%] Built target _ost_img
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/src/CMakeFiles/ost_mol.dir/build.make modules/mol/base/src/CMakeFiles/ost_mol.dir/build
[ 10%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_op4.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_op4.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_op4.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/promod_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./promod_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/strategies_fw.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/strategies_fw.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/profile_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./profile_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/data_viewer/viewer_normalizer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/data_viewer/viewer_normalizer.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/base/src/CMakeFiles/ost_mol.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/hhm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./hhm_io_handler.hh
[ 15%] Built target ost_mol
make  -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/src/CMakeFiles/ost_seq.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_browser.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_browser.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/pssm_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./pssm_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/clustal_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./clustal_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_type_dialog.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_type_dialog.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build.make modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/load.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_viewer.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_viewer.hh
make[4]: Nothing to be done for 'modules/img/alg/src/CMakeFiles/ost_img_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./seq/save.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./save.hh
[ 20%] Built target ost_img_alg
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gl_canvas.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_canvas.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/load_map.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./load_map.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gl_win.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gl_win.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_df3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_df3_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./scene_menu.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_menu.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/image_format.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./image_format.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./gosty_app.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./gosty_app.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./admin.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./admin.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dx_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dx_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./module_config.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./module_config.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_spi_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_spi_handler.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/src/CMakeFiles/ost_seq.dir/build.make modules/seq/base/src/CMakeFiles/ost_seq.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/base/src/CMakeFiles/ost_seq.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_situs_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_situs_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main_area.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_area.hh
[ 21%] Built target ost_seq
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./perspective.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./perspective.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_mrc_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_mrc_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./scene_selection.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./scene_selection.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dat_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dat_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./main_window.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./main_window.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_ipl_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_ipl_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_jpk_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_jpk_handler.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build.make modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_nanoscope_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_nanoscope_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./dock_widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./dock_widget.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/img/alg/pymod/CMakeFiles/_ost_img_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_png_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_png_handler.hh
[ 22%] Built target _ost_img_alg
make  -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./thin_splitter.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./thin_splitter.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/ost_base_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/ost_base_tests.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests.dir/build
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_dm3_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_dm3_handler.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget.hh
[ 22%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -MF CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/tests/test_generic_property.cc
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/map_io_tiff_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./map_io_tiff_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_geom_handler.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_geom_handler.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/tiff_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./tiff_util.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_pool.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_pool.hh
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/io/src/./img/jpk_util.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/io/./jpk_util.hh
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_registry.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_registry.hh
make  -f modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build.make modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./widget_state_saver.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./widget_state_saver.hh
[ 22%] Built target ost_io_headers
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/base/pymod/CMakeFiles/_ost_mol.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/depend
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/modules/gui/src/./file_loader.hh /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/gui/./file_loader.hh
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/src/CMakeFiles/ost_bindings.dir/DependInfo.cmake "--color="
[ 24%] Built target _ost_mol
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/depend
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests.dir/DependInfo.cmake "--color="
[ 24%] Built target ost_gui_headers
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/depend
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/src/CMakeFiles/ost_bindings.dir/build.make modules/bindings/src/CMakeFiles/ost_bindings.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/bindings/src/CMakeFiles/ost_bindings.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 24%] Built target ost_bindings
make  -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/depend
[ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_data.cc.o -MF CMakeFiles/ost_img_tests.dir/test_data.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_data.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests/test_data.cc
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 24%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_clear.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build.make modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 24%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_atom_groups.cc
[ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_quat.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_quat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_quat.cc
[ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec2.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_vec2.cc
[ 24%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_vec3.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_vec3.cc
[ 24%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_extent.cc.o -MF CMakeFiles/ost_img_tests.dir/test_extent.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_extent.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests/test_extent.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -MF CMakeFiles/ost_geom_tests.dir/test_transform.cc.o.d -o CMakeFiles/ost_geom_tests.dir/test_transform.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_transform.cc
[ 25%] Building CXX object modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests && /usr/bin/c++ -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modules/geom/tests/CMakeFiles/ost_geom_tests.dir/tests.cc.o -MF CMakeFiles/ost_geom_tests.dir/tests.cc.o.d -o CMakeFiles/ost_geom_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/tests.cc
[ 25%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_image.cc.o -MF CMakeFiles/ost_img_tests.dir/test_image.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_image.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests/test_image.cc
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[ 25%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_point.cc.o -MF CMakeFiles/ost_img_tests.dir/test_point.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_point.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests/test_point.cc
[ 25%] Building CXX object modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -MF CMakeFiles/ost_img_tests.dir/test_sampling.cc.o.d -o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests/test_sampling.cc
[ 25%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_convolute.cc
[ 25%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o
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[ 25%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_chain.cc.o
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[ 25%] Linking CXX executable ../../../tests/ost_geom_tests
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[ 25%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/base/tests/CMakeFiles/ost_img_tests.dir/tests.cc.o -MF CMakeFiles/ost_img_tests.dir/tests.cc.o.d -o CMakeFiles/ost_img_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests/tests.cc
[ 26%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -MF CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o.d -o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/tests/test_pod_vector.cc
[ 26%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_fill.cc
[ 27%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_filter.cc
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build.make modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/alg/src/CMakeFiles/ost_seq_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/DependInfo.cmake "--color="
[ 29%] Built target ost_seq_alg
make  -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/src/CMakeFiles/ost_db.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build.make modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build
[ 29%] Building CXX object modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/base/tests/CMakeFiles/ost_base_tests.dir/tests.cc.o -MF CMakeFiles/ost_base_tests.dir/tests.cc.o.d -o CMakeFiles/ost_base_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/base/tests/tests.cc
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/base/pymod/CMakeFiles/_ost_seq.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 29%] Built target _ost_seq
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/db/src/CMakeFiles/ost_db.dir/build.make modules/db/src/CMakeFiles/ost_db.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/db/src/CMakeFiles/ost_db.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build.make modules/geom/tests/CMakeFiles/ost_geom_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 30%] Built target ost_db
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/DependInfo.cmake "--color="
[ 30%] running checks for module geom
cd /build/reproducible-path/openstructure-2.10.0/modules/geom/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_geom_tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build.make modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/seq/alg/pymod/CMakeFiles/_ost_seq_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 31%] Built target _ost_seq_alg
make  -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/src/CMakeFiles/ost_conop.dir/DependInfo.cmake "--color="
Running 25 test cases...

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 31%] Built target ost_geom_tests_run
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/pymod/CMakeFiles/_ost_db.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/db/pymod/CMakeFiles/_ost_db.dir/build.make modules/db/pymod/CMakeFiles/_ost_db.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/conop/src/CMakeFiles/ost_conop.dir/build.make modules/conop/src/CMakeFiles/ost_conop.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/db/pymod/CMakeFiles/_ost_db.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 31%] Built target _ost_db
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/conop/src/CMakeFiles/ost_conop.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/DependInfo.cmake "--color="
[ 34%] Built target ost_conop
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/src/CMakeFiles/ost_gfx.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build.make modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/bindings/pymod/CMakeFiles/_ost_bindings.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 34%] Built target _ost_bindings
make  -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/pymod/CMakeFiles/_ost_conop.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/conop/pymod/CMakeFiles/_ost_conop.dir/build.make modules/conop/pymod/CMakeFiles/_ost_conop.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/conop/pymod/CMakeFiles/_ost_conop.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 34%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_histogram.cc
[ 35%] Built target _ost_conop
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build.make modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/src/CMakeFiles/ost_gfx.dir/build.make modules/gfx/src/CMakeFiles/ost_gfx.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/alg/src/CMakeFiles/ost_mol_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 37%] Built target ost_mol_alg
make  -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/gfx/src/CMakeFiles/ost_gfx.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 43%] Built target ost_gfx
make  -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/src/CMakeFiles/ost_io.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 43%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/tests/test_amino_acids.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/src/CMakeFiles/ost_io.dir/build.make modules/io/src/CMakeFiles/ost_io.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/io/src/CMakeFiles/ost_io.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 48%] Built target ost_io
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/depend
[ 48%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests/test_aligned_column.cc
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build.make modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/alg/pymod/CMakeFiles/_ost_mol_alg.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 50%] Built target _ost_mol_alg
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 50%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/tests.cc.o -MF CMakeFiles/ost_gfx_tests.dir/tests.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests/tests.cc
[ 50%] Linking CXX executable ../../../../tests/ost_img_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_tests.dir/link.txt --verbose=1
make  -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/ost_io_tests.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 50%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -MF CMakeFiles/ost_io_tests.dir/test_clustal.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_clustal.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_clustal.cc
[ 50%] Linking CXX executable ../../../tests/ost_base_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_base_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_img_tests.dir/link.d CMakeFiles/ost_img_tests.dir/test_data.cc.o CMakeFiles/ost_img_tests.dir/test_extent.cc.o CMakeFiles/ost_img_tests.dir/test_image.cc.o CMakeFiles/ost_img_tests.dir/test_image_state.cc.o CMakeFiles/ost_img_tests.dir/test_image_state_visitor.cc.o CMakeFiles/ost_img_tests.dir/test_index.cc.o CMakeFiles/ost_img_tests.dir/test_point.cc.o CMakeFiles/ost_img_tests.dir/test_sampling.cc.o CMakeFiles/ost_img_tests.dir/test_domains.cc.o CMakeFiles/ost_img_tests.dir/test_size.cc.o CMakeFiles/ost_img_tests.dir/test_value_holder.cc.o CMakeFiles/ost_img_tests.dir/tests.cc.o -o ../../../../tests/ost_img_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 50%] Built target ost_img_tests
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_base_tests.dir/link.d CMakeFiles/ost_base_tests.dir/test_generic_property.cc.o CMakeFiles/ost_base_tests.dir/test_string_ref.cc.o CMakeFiles/ost_base_tests.dir/test_pod_vector.cc.o CMakeFiles/ost_base_tests.dir/tests.cc.o -o ../../../tests/ost_base_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/depend
[ 50%] Built target ost_base_tests
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/src/CMakeFiles/ost_mol_mm.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_superposition.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_distance_analysis.cc
[ 51%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests/test_gfx_node.cc
[ 51%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_mirror.cc
[ 51%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_negate.cc
[ 51%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_power_spectrum.cc
In file included from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/local_dist_diff_test.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_distance_analysis.cc:34:
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh: In member function 'std::pair<float, float> ost::mol::alg::StereoChemicalBondViolation::GetAllowedRange() const':
/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/alg/filter_clashes.hh:91:48: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
   91 |   std::pair<Real,Real> GetAllowedRange() const { return allowed_range_; }
      |                                                ^
[ 51%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests/test_aligned_region.cc
[ 51%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_pdb.cc
[ 51%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_shift.cc
[ 51%] Building CXX object modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/img/alg/tests/CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -MF CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o.d -o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests/test_stat.cc
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
                 from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
                 from /usr/include/boost/test/detail/global_typedef.hpp:15,
                 from /usr/include/boost/test/tools/detail/print_helper.hpp:20,
                 from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
                 from /usr/include/boost/test/tools/context.hpp:19,
                 from /usr/include/boost/test/test_tools.hpp:42,
                 from /usr/include/boost/test/unit_test.hpp:18,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_chain.cc:23:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_chain.cc:114:18:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_chain.cc:25:
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/string:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_chain.cc:114:18:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_chain.cc:114:18:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ResidueBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::throw_invalid_chain_handle::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_chain.cc:114:18:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::throw_invalid_chain_handle::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 52%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_merge_pairwise_alignments.cc
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_sequence_identity.cc
[ 53%] Building CXX object modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/tests.cc
[ 54%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_coord_group.cc
[ 54%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_builder.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_builder.cc
[ 54%] Linking CXX executable ../../../../tests/ost_img_alg_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_img_alg_tests.dir/link.txt --verbose=1
[ 54%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -MF CMakeFiles/ost_seq_tests.dir/test_profile.cc.o.d -o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests/test_profile.cc
[ 54%] Building CXX object modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_img_alg_tests.dir/link.d CMakeFiles/ost_img_alg_tests.dir/test_clear.cc.o CMakeFiles/ost_img_alg_tests.dir/test_conj.cc.o CMakeFiles/ost_img_alg_tests.dir/test_convolute.cc.o CMakeFiles/ost_img_alg_tests.dir/test_discrete_shrink.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fft.cc.o CMakeFiles/ost_img_alg_tests.dir/test_fill.cc.o CMakeFiles/ost_img_alg_tests.dir/test_filter.cc.o CMakeFiles/ost_img_alg_tests.dir/test_histogram.cc.o CMakeFiles/ost_img_alg_tests.dir/test_mirror.cc.o CMakeFiles/ost_img_alg_tests.dir/test_negate.cc.o CMakeFiles/ost_img_alg_tests.dir/test_power_spectrum.cc.o CMakeFiles/ost_img_alg_tests.dir/test_shift.cc.o CMakeFiles/ost_img_alg_tests.dir/test_stat.cc.o CMakeFiles/ost_img_alg_tests.dir/test_transform.cc.o CMakeFiles/ost_img_alg_tests.dir/test_normalizer.cc.o CMakeFiles/ost_img_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_img_alg_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/seq/base/tests/CMakeFiles/ost_seq_tests.dir/tests.cc.o -MF CMakeFiles/ost_seq_tests.dir/tests.cc.o.d -o CMakeFiles/ost_seq_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests/tests.cc
[ 54%] Built target ost_img_alg_tests
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cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -MF CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o.d -o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_partial_sec_struct_assignment.cc
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make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build.make modules/base/tests/CMakeFiles/ost_base_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/DependInfo.cmake "--color="
[ 88%] running checks for module base
cd /build/reproducible-path/openstructure-2.10.0/modules/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_base_tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build.make modules/img/base/tests/CMakeFiles/ost_img_tests_run.dir/build
Running 5 test cases...

*** No errors detected
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 88%] Built target ost_base_tests_run
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/depend
[ 88%] running checks for module img
cd /build/reproducible-path/openstructure-2.10.0/modules/img/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_img_tests
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build.make modules/img/alg/tests/CMakeFiles/ost_img_alg_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 89%] running checks for module img_alg
cd /build/reproducible-path/openstructure-2.10.0/modules/img/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_img_alg_tests
[ 89%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_delete.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_delete.cc
Running 44 test cases...

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 89%] Built target ost_img_tests_run
make  -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build.make modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 89%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_interaction.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_interaction.cc
Running 25 test cases...

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 89%] Built target ost_img_alg_tests_run
make  -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build.make modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/mol/mm/pymod/CMakeFiles/_ost_mol_mm.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 90%] Built target _ost_mol_mm
make  -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gui/pymod/CMakeFiles/_ost_gui.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gui/pymod/CMakeFiles/_ost_gui.dir/build.make modules/gui/pymod/CMakeFiles/_ost_gui.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Nothing to be done for 'modules/gui/pymod/CMakeFiles/_ost_gui.dir/build'.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 92%] Built target _ost_gui
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts/CMakeFiles/ost_scripts.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f scripts/CMakeFiles/ost_scripts.dir/build.make scripts/CMakeFiles/ost_scripts.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_config /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/openstructure/libexec/ost_config
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/bin/ost
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different dng /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/bin/dng
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different ost_startup.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/ost_startup.py
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/openstructure-2.10.0/scripts/dng_startup.py /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages//ost/dng_startup.py
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 92%] Built target ost_scripts
make  -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_aaindex.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 92%] running checks test_aaindex.py
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_aaindex.py"
[ 92%] Building CXX object modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/gfx/tests/CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -MF CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o.d -o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests/test_map_octree.cc
[ 92%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/tests.cc.o -MF CMakeFiles/ost_conop_tests.dir/tests.cc.o.d -o CMakeFiles/ost_conop_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/tests/tests.cc
Compound library not available. Some functionality may not work as expected.
[ 92%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_entity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc
[ 92%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -MF CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o.d -o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/tests/test_rule_based_conop.cc
.
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Ran 1 test in 0.593s

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[ 92%] Built target test_aaindex.py_run
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_stutil.py_run.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/base/tests/test_stutil.py"
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_table.py_run.dir/DependInfo.cmake "--color="
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[ 92%] running checks test_table.py
cd /build/reproducible-path/openstructure-2.10.0/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/base/tests/test_table.py"
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[ 92%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_ics.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_ics.cc
[ 92%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_query.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_query.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_query.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_query.cc
[ 92%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_block.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_block.cc
[ 92%] Linking CXX executable ../../../../tests/ost_mol_alg_tests
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[ 92%] Linking CXX executable ../../../../tests/ost_seq_alg_tests
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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_mol_alg_tests.dir/link.d CMakeFiles/ost_mol_alg_tests.dir/test_superposition.cc.o CMakeFiles/ost_mol_alg_tests.dir/tests.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_consistency_checks.cc.o CMakeFiles/ost_mol_alg_tests.dir/test_partial_sec_struct_assignment.cc.o -o ../../../../tests/ost_mol_alg_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.10.0 ../../../../stage/lib/libost_mol_alg.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_db.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../../stage/lib/libost_geom.so.2.10.0
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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make  -f modules/base/tests/CMakeFiles/test_log.py_run.dir/build.make modules/base/tests/CMakeFiles/test_log.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/base/tests/CMakeFiles/test_log.py_run.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/modules/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/base/tests/test_log.py"
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/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_seq_alg_tests.dir/link.d CMakeFiles/ost_seq_alg_tests.dir/test_distance_analysis.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_merge_pairwise_alignments.cc.o CMakeFiles/ost_seq_alg_tests.dir/test_sequence_identity.cc.o CMakeFiles/ost_seq_alg_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_alg_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../../stage/lib/libost_conop.so.2.10.0 ../../../../stage/lib/libost_db.so.2.10.0 ../../../../stage/lib/libost_seq.so.2.10.0 ../../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../../stage/lib/libost_img_alg.so.2.10.0 ../../../../stage/lib/libost_img.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
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[ 93%] Built target ost_seq_alg_tests
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 93%] running checks test_msms.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_msms.py"
[ 94%] running checks test_clustalw.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_clustalw.py"
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
[ 94%] Linking CXX executable ../../../../tests/ost_seq_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_seq_tests.dir/link.txt --verbose=1
/build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc: In member function 'void mol_base::minmax::test_method()':
/build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:438:66: note: parameter passing for argument of type 'std::pair<float, float>' when C++17 is enabled changed to match C++14 in GCC 10.1
  438 |   std::pair<float,float> minmax = ev.GetMinMax("test", Prop::ATOM);
      |                                                                  ^
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_seq_tests.dir/link.d CMakeFiles/ost_seq_tests.dir/test_sequence.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_column.cc.o CMakeFiles/ost_seq_tests.dir/test_aligned_region.cc.o CMakeFiles/ost_seq_tests.dir/test_alignment.cc.o CMakeFiles/ost_seq_tests.dir/test_profile.cc.o CMakeFiles/ost_seq_tests.dir/tests.cc.o -o ../../../../tests/ost_seq_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 94%] Built target ost_seq_tests
make  -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hhblits.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 94%] running checks test_hhblits.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_hhblits.py"
Compound library not available. Some functionality may not work as expected.
No HHblits installation found: skip unit tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 94%] Built target test_hhblits.py_run
make  -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_blast.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 94%] running checks test_blast.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_blast.py"
/build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_blast.py:81: SyntaxWarning: invalid escape sequence '\d'
  re_v = re.compile('\d+\.\d+\.\d+')
Compound library not available. Some functionality may not work as expected.
Could not find msms executable: ignoring unit tests
Could not find blast executable: ignoring unit tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 94%] Built target test_blast.py_run
[ 94%] Built target test_msms.py_run
make  -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/depend
[ 95%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_block_modifiers.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_block_modifiers.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_kclust.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_kclust.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_kclust.py"
Compound library not available. Some functionality may not work as expected.
.[ 95%] Linking CXX executable ../../../tests/ost_gfx_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_gfx_tests.dir/link.txt --verbose=1
Could not find kClust executable: ignoring unit tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] Built target test_kclust.py_run
make  -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_naccess.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_naccess.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_naccess.py"
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_gfx_tests.dir/link.d CMakeFiles/ost_gfx_tests.dir/tests.cc.o CMakeFiles/ost_gfx_tests.dir/test_gfx_node.cc.o CMakeFiles/ost_gfx_tests.dir/test_color.cc.o CMakeFiles/ost_gfx_tests.dir/test_map_octree.cc.o -o ../../../tests/ost_gfx_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_gfx.so.2.10.0 ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libOpenGL.so /usr/lib/aarch64-linux-gnu/libGLX.so /usr/lib/aarch64-linux-gnu/libGLU.so /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] Built target ost_gfx_tests
make  -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/DependInfo.cmake "--color="
Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_cadscore.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] running checks test_cadscore.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_cadscore.py"
Could not find NACCESS, could not test binding...
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] Built target test_naccess.py_run
make  -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/DependInfo.cmake "--color="
Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_tmtools.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
.[ 95%] running checks test_tmtools.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_tmtools.py"
.Compound library not available. Some functionality may not work as expected.
.s...
----------------------------------------------------------------------
Ran 7 tests in 2.165s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 95%] Built target test_clustalw.py_run
make  -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/DependInfo.cmake "--color="
..make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_ialign.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_ialign.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_ialign.py"
Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
Ran 3 tests in 0.417s

OK
Could not find tmalign executable: ignoring unit tests
Could not find tmalign executable: ignoring unit tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_tmtools.py_run
.make  -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/depend

----------------------------------------------------------------------
Ran 1 test in 0.039s

OK
Could not find ialign master perl script: ignoring unit tests
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_lga.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_lga.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_lga.py"
[ 96%] Built target test_ialign.py_run
make  -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_hbplus.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[ 96%] running checks test_hbplus.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_hbplus.py"
Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
Ran 1 test in 0.052s

OK
Could not find lga executable: ignoring unit tests
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Building CXX object modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/conop/tests/CMakeFiles/ost_conop_tests.dir/helper.cc.o -MF CMakeFiles/ost_conop_tests.dir/helper.cc.o.d -o CMakeFiles/ost_conop_tests.dir/helper.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/conop/tests/helper.cc
[ 96%] Built target test_lga.py_run
make  -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build.make modules/bindings/tests/CMakeFiles/test_dockq.py_run.dir/build
Could not find hbplus, could not test binding...
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_dockq.py
cd /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/bindings/tests/test_dockq.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[ 96%] Built target test_hbplus.py_run
make  -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/test_processor.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_processor.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_processor.py
cd /build/reproducible-path/openstructure-2.10.0/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/conop/tests/test_processor.py"
Could not find DockQ.py, could not test binding...
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[ 96%] Built target test_dockq.py_run
make  -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/test_complib.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build.make modules/conop/tests/CMakeFiles/test_complib.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_complib.py
cd /build/reproducible-path/openstructure-2.10.0/modules/conop/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/conop/tests/test_complib.py"
.
----------------------------------------------------------------------
Ran 1 test in 0.000s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_processor.py_run
make  -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/db/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build.make modules/db/tests/CMakeFiles/test_linear_db.py_run.dir/build
Compound library not available. Some functionality may not work as expected.
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_linear_db.py
cd /build/reproducible-path/openstructure-2.10.0/modules/db/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/db/tests/test_linear_db.py"
Compound library not available. Some functionality may not work as expected.
...
----------------------------------------------------------------------
Ran 3 tests in 0.006s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_linear_db.py_run
make  -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/depend
../build/reproducible-path/openstructure-2.10.0/modules/conop/tests/test_complib.py:71: UserWarning: Compound library not available. Some functionality may not work as expected.
  warnings.warn("Compound library not available. Some functionality may not work as expected.")
.make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/geom/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/geom/tests/CMakeFiles/test_geom.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build.make modules/geom/tests/CMakeFiles/test_geom.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
.[ 96%] running checks test_geom.py
cd /build/reproducible-path/openstructure-2.10.0/modules/geom/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/geom/tests/test_geom.py"
....
----------------------------------------------------------------------
Ran 8 tests in 0.392s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_complib.py_run
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/depend
Compound library not available. Some functionality may not work as expected.
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build.make modules/gfx/tests/CMakeFiles/ost_gfx_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks for module gfx
cd /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_gfx_tests
........
----------------------------------------------------------------------
Ran 8 tests in 0.001s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_geom.py_run
make  -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build.make modules/gfx/tests/CMakeFiles/test_gfx.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_gfx.py
cd /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/gfx/tests/test_gfx.py"
Compound library not available. Some functionality may not work as expected.
......
----------------------------------------------------------------------
Ran 6 tests in 0.007s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_gfx.py_run
make  -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_pdb.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_io_pdb.py
cd /build/reproducible-path/openstructure-2.10.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_pdb.py"
Compound library not available. Some functionality may not work as expected.
....s
----------------------------------------------------------------------
Ran 5 tests in 0.032s

OK (skipped=1)
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_io_pdb.py_run
make  -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_mmcif.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_io_mmcif.py
cd /build/reproducible-path/openstructure-2.10.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_mmcif.py"
Compound library not available. Some functionality may not work as expected.
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/boost/test/utils/basic_cstring/bcs_char_traits.hpp:25,
                 from /usr/include/boost/test/utils/basic_cstring/basic_cstring.hpp:21,
                 from /usr/include/boost/test/detail/global_typedef.hpp:15,
                 from /usr/include/boost/test/tools/detail/print_helper.hpp:20,
                 from /usr/include/boost/test/utils/lazy_ostream.hpp:16,
                 from /usr/include/boost/test/tools/context.hpp:19,
                 from /usr/include/boost/test/test_tools.hpp:42,
                 from /usr/include/boost/test/unit_test.hpp:18,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:24:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:436:20:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/query.hh:30,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/entity_handle.hh:26,
                 from /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/mol/mol.hh:22,
                 from /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:27:
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/string:42:
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:436:20:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:436:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::AtomBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:358:38,
    inlined from 'void mol_base::minmax::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:436:20:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::minmax::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
.No citation for identifier '1' found. Couldn't set author list.
SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
..SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
[ 96%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_surface.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_surface.cc
...../build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2696: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
  return np.trapz(enr[1], enr[0])
../build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2807: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
  return np.trapz(roc[1], roc[0])
.................SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'LYZ' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
unknown residue 'HYP' in SEQRES record. Setting one-letter-code to 'X'
.SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
No SEQRES found for chain 'A'. Most likely the entity_poly_seq category was missing from the input file.
No SEQRES found for chain 'B'. Most likely the entity_poly_seq category was missing from the input file.
No SEQRES found for chain 'C'. Most likely the entity_poly_seq category was missing from the input file.
......s
----------------------------------------------------------------------
Ran 12 tests in 2.000s

OK (skipped=1)
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_io_mmcif.py_run
make  -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_omf.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_io_omf.py
cd /build/reproducible-path/openstructure-2.10.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_omf.py"
Compound library not available. Some functionality may not work as expected.
No compound library available. Ignoring test_stereochemistry.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_io_omf.py_run
make  -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build.make modules/io/tests/CMakeFiles/test_io_sdf.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_io_sdf.py
cd /build/reproducible-path/openstructure-2.10.0/modules/io/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_sdf.py"
Compound library not available. Some functionality may not work as expected.
.....
----------------------------------------------------------------------
Ran 5 tests in 0.032s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_io_sdf.py_run
make  -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build.make modules/mol/base/tests/CMakeFiles/test_invalid.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:140:19:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In static member function 'static constexpr void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:140:19:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:140:19:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = int; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetIntProp(const String&, int) [with H = ost::mol::ChainBase]' at /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include/ost/generic_property.hh:365:38,
    inlined from 'void mol_base::entity_creator::test_method()' at /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_entity.cc:140:19:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In member function 'void mol_base::entity_creator::test_method()':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 96%] running checks test_invalid.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_invalid.py"
[ 96%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_topology.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_topology.cc
Compound library not available. Some functionality may not work as expected.
.......
----------------------------------------------------------------------
Ran 7 tests in 0.002s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_invalid.py_run
make  -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build.make modules/mol/alg/tests/CMakeFiles/ost_mol_alg_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks for module mol_alg
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_mol_alg_tests
...../build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/ost/table.py:2807: DeprecationWarning: `trapz` is deprecated. Use `trapezoid` instead, or one of the numerical integration functions in `scipy.integrate`.
  return np.trapz(roc[1], roc[0])
..........Running 4 test cases...

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target ost_mol_alg_tests_run
make  -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_pdbize.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_pdbize.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_pdbize.py"
Compound library not available. Some functionality may not work as expected.
........
----------------------------------------------------------------------
Ran 8 tests in 0.004s

OK
/usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/enrichment-out.png'>
  if method() is not None:
ResourceWarning: Enable tracemalloc to get the object allocation traceback
.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_pdbize.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_convenient_superpose.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_convenient_superpose.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_convenient_superpose.py"
Compound library not available. Some functionality may not work as expected.
../usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-out.png'>
  if method() is not None:
ResourceWarning: Enable tracemalloc to get the object allocation traceback
.[ 96%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_residue.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_residue.cc
/usr/lib/python3.13/unittest/case.py:606: ResourceWarning: unclosed file <_io.BufferedReader name='testfiles/roc-same-val-out.png'>
  if method() is not None:
ResourceWarning: Enable tracemalloc to get the object allocation traceback
..........................................
----------------------------------------------------------------------
Ran 83 tests in 4.911s

OK
[ 96%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_forcefield.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_forcefield.cc
.make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
.[ 96%] Built target test_table.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_hbond.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_hbond.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_hbond.py"
Compound library not available. Some functionality may not work as expected.
....
----------------------------------------------------------------------
Ran 2 tests in 0.029s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_hbond.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_accessibility.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_accessibility.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_accessibility.py"
[ 96%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_view.cc
Compound library not available. Some functionality may not work as expected.
..s[ 96%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -MF CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o.d -o CMakeFiles/ost_mol_mm_tests.dir/test_simulation.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_simulation.cc
..
----------------------------------------------------------------------
Ran 9 tests in 2.201s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_convenient_superpose.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_sec_struct.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_sec_struct.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_sec_struct.py"
Compound library not available. Some functionality may not work as expected.
[ 96%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_transfer_connectivity.cc
s
----------------------------------------------------------------------
Ran 1 test in 0.000s

OK (skipped=1)
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_sec_struct.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_lddt.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_lddt.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_lddt.py"
Compound library not available. Some functionality may not work as expected.
[ 96%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_crd.cc
No compound library available. Ignoring test_lddt.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_lddt.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_qsscore.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_qsscore.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_qsscore.py"
Compound library not available. Some functionality may not work as expected.
No compound lib available. Ignoring test_qsscore.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_qsscore.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/DependInfo.cmake "--color="
.
----------------------------------------------------------------------
Ran 2 tests in 3.859s

OK (skipped=1)
Could not find NACCESS, could not compare Accessiblity function...
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_stereochemistry.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_stereochemistry.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_stereochemistry.py"
[ 96%] Built target test_accessibility.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_contact_score.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_contact_score.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_contact_score.py"
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
No compound library available. Ignoring test_stereochemistry.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_stereochemistry.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_biounit.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_biounit.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_biounit.py"
No compound lib available. Ignoring contact_score.py tests.
Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_contact_score.py_run
Ignoring struct_ref_seq_dif with missing data item seq_num
Ignoring struct_ref_seq_dif with missing data item seq_num
make  -f modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/DependInfo.cmake "--color="
SEQRES requires a valid compound library to handle non standard compounds. Their One letter codes will be set to X.
unknown residue 'ACE' in SEQRES record. Setting one-letter-code to 'X'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_ost_dockq.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_ost_dockq.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_ost_dockq.py"
.
----------------------------------------------------------------------
Ran 1 test in 0.262s

OK
Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_biounit.py_run
make  -f modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build.make modules/mol/alg/tests/CMakeFiles/test_bblddt.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_bblddt.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/alg/tests/test_bblddt.py"
Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
Ran 1 test in 0.551s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target test_ost_dockq.py_run
make  -f modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build.make modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/DependInfo.cmake "--color="
No compound lib available. Ignoring test_bblddt.py tests.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build.make modules/mol/mm/tests/CMakeFiles/test_antechamber.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks test_antechamber.py
cd /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests/test_antechamber.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[ 96%] Built target test_bblddt.py_run
make  -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build.make modules/seq/base/tests/CMakeFiles/ost_seq_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] running checks for module seq
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_seq_tests
Running 32 test cases...

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 96%] Built target ost_seq_tests_run
make  -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build.make modules/seq/base/tests/CMakeFiles/test_seq.py_run.dir/build
.make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
..
----------------------------------------------------------------------
Ran 3 tests in 0.051s

OK
[ 97%] running checks test_seq.py
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/base/tests/test_seq.py"
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] Built target test_antechamber.py_run
make  -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/DependInfo.cmake "--color="
Compound library not available. Some functionality may not work as expected.
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build.make modules/seq/alg/tests/CMakeFiles/ost_seq_alg_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] running checks for module seq_alg
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_seq_alg_tests
Running 19 test cases...

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
.....[ 97%] Built target ost_seq_alg_tests_run
.......make  -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/depend
..
----------------------------------------------------------------------
Ran 14 tests in 0.008s

OK
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_renumber.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] running checks test_renumber.py
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_renumber.py"
[ 97%] Built target test_seq.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_local_align.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[ 97%] running checks test_local_align.py
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_local_align.py"
Compound library not available. Some functionality may not work as expected.
........
----------------------------------------------------------------------
Ran 8 tests in 0.105s

OK
...
----------------------------------------------------------------------
Ran 3 tests in 0.001s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] Built target test_renumber.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/depend
[ 97%] Built target test_local_align.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/DependInfo.cmake "--color="
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_global_align.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_semiglobal_align.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] running checks test_semiglobal_align.py
[ 97%] running checks test_global_align.py
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_semiglobal_align.py"
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_global_align.py"
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
Ran 1 test in 0.001s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
...
----------------------------------------------------------------------
Ran 3 tests in 0.001s

OK
[ 97%] Built target test_semiglobal_align.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_weight_matrix.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] Linking CXX executable ../../../tests/ost_conop_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_conop_tests.dir/link.txt --verbose=1
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] Built target test_global_align.py_run
make  -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/depend
[ 97%] running checks test_weight_matrix.py
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_weight_matrix.py"
[ 97%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -MF CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o.d -o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/test_view_op.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build.make modules/seq/alg/tests/CMakeFiles/test_alignment_from_chain_view.py_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 97%] running checks test_alignment_from_chain_view.py
cd /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests && sh -c "PYTHONPATH=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib/python3.13/dist-packages/  /usr/bin/python3 /build/reproducible-path/openstructure-2.10.0/modules/seq/alg/tests/test_alignment_from_chain_view.py"
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
Ran 1 test in 0.006s

OK
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
..
----------------------------------------------------------------------
Ran 2 tests in 0.000s

OK
[ 97%] Built target test_alignment_from_chain_view.py_run
[ 98%] Building CXX object modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/mol/base/tests/CMakeFiles/ost_mol_tests.dir/tests.cc.o -MF CMakeFiles/ost_mol_tests.dir/tests.cc.o.d -o CMakeFiles/ost_mol_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests/tests.cc
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_conop_tests.dir/link.d CMakeFiles/ost_conop_tests.dir/test_amino_acids.cc.o CMakeFiles/ost_conop_tests.dir/test_heuristic_conop.cc.o CMakeFiles/ost_conop_tests.dir/tests.cc.o CMakeFiles/ost_conop_tests.dir/test_rule_based_conop.cc.o CMakeFiles/ost_conop_tests.dir/helper.cc.o -o ../../../tests/ost_conop_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 98%] Built target ost_conop_tests
[ 98%] Built target test_weight_matrix.py_run
make  -f modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/build.make modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/conop/tests/CMakeFiles/ost_conop_tests_run.dir/DependInfo.cmake "--color="
[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_dcd.cc
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 98%] running checks for module conop
cd /build/reproducible-path/openstructure-2.10.0/modules/conop/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_conop_tests
Running 18 test cases...
unable to open database file
unable to open database file
unable to open database file
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*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[ 98%] Built target ost_conop_tests_run
[ 98%] Building CXX object modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests.dir/tests.cc.o
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[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_sdf.cc
.
----------------------------------------------------------------------
Ran 2 tests in 24.720s

OK (skipped=1)
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o
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[ 98%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_sequence_profile.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_pir.cc.o -MF CMakeFiles/ost_io_tests.dir/test_pir.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_pir.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_pir.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -MF CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_iomanager.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/tests.cc.o -MF CMakeFiles/ost_io_tests.dir/tests.cc.o.d -o CMakeFiles/ost_io_tests.dir/tests.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/tests.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -MF CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_star_parser.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_mmcif_reader.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_mmcif_writer.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -MF CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_mmcif_info.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -MF CMakeFiles/ost_io_tests.dir/test_io_img.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_img.cc
[100%] Building CXX object modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_XML_LIB -I/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/include -I/usr/include/eigen3 -isystem /usr/include/aarch64-linux-gnu/qt5 -isystem /usr/include/aarch64-linux-gnu/qt5/QtXml -isystem /usr/include/aarch64-linux-gnu/qt5/QtCore -isystem /usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/aarch64-linux-gnu/qt5/QtGui -isystem /usr/include/aarch64-linux-gnu/qt5/QtWidgets -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modules/io/tests/CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -MF CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o.d -o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -c /build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_exceptions.cc
/build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_img.cc: In member function 'void io::test_io_img::test_method()':
/build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_img.cc:105:10: warning: variable 'failed' set but not used [-Wunused-but-set-variable]
  105 |     bool failed=false;
      |          ^~~~~~
/build/reproducible-path/openstructure-2.10.0/modules/io/tests/test_io_img.cc:130:10: warning: variable 'failed' set but not used [-Wunused-but-set-variable]
  130 |     bool failed=false;
      |          ^~~~~~
[100%] Linking CXX executable ../../../../tests/ost_mol_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/base/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_mol_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_mol_tests.dir/link.d CMakeFiles/ost_mol_tests.dir/test_atom_groups.cc.o CMakeFiles/ost_mol_tests.dir/test_chain.cc.o CMakeFiles/ost_mol_tests.dir/test_conn.cc.o CMakeFiles/ost_mol_tests.dir/test_coord_group.cc.o CMakeFiles/ost_mol_tests.dir/test_builder.cc.o CMakeFiles/ost_mol_tests.dir/test_delete.cc.o CMakeFiles/ost_mol_tests.dir/test_entity.cc.o CMakeFiles/ost_mol_tests.dir/test_ics.cc.o CMakeFiles/ost_mol_tests.dir/test_query.cc.o CMakeFiles/ost_mol_tests.dir/test_surface.cc.o CMakeFiles/ost_mol_tests.dir/test_residue.cc.o CMakeFiles/ost_mol_tests.dir/test_view.cc.o CMakeFiles/ost_mol_tests.dir/test_transfer_connectivity.cc.o CMakeFiles/ost_mol_tests.dir/test_view_op.cc.o CMakeFiles/ost_mol_tests.dir/tests.cc.o -o ../../../../tests/ost_mol_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../../stage/lib/libost_mol.so.2.10.0 ../../../../stage/lib/libost_info.so.2.10.0 ../../../../stage/lib/libost_base.so.2.10.0 ../../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15
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cd /build/reproducible-path/openstructure-2.10.0/modules/mol/base/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_mol_tests
Running 71 test cases...

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make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
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make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/mol/mm/tests/CMakeFiles/ost_mol_mm_tests_run.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/openstructure-2.10.0/modules/mol/mm/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_mol_mm_tests
Running 13 test cases...

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[100%] Linking CXX executable ../../../tests/ost_io_tests
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ost_io_tests.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/openstructure-2.10.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/ost_io_tests.dir/link.d CMakeFiles/ost_io_tests.dir/test_clustal.cc.o CMakeFiles/ost_io_tests.dir/test_io_pdb.cc.o CMakeFiles/ost_io_tests.dir/test_io_crd.cc.o CMakeFiles/ost_io_tests.dir/test_io_dcd.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf.cc.o CMakeFiles/ost_io_tests.dir/test_io_sdf_v3000.cc.o CMakeFiles/ost_io_tests.dir/test_io_sequence_profile.cc.o CMakeFiles/ost_io_tests.dir/test_pir.cc.o CMakeFiles/ost_io_tests.dir/test_iomanager.cc.o CMakeFiles/ost_io_tests.dir/tests.cc.o CMakeFiles/ost_io_tests.dir/test_star_parser.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_reader.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_writer.cc.o CMakeFiles/ost_io_tests.dir/test_mmcif_info.cc.o CMakeFiles/ost_io_tests.dir/test_io_img.cc.o CMakeFiles/ost_io_tests.dir/test_exceptions.cc.o -o ../../../tests/ost_io_tests   -L/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib  -Wl,-rpath,/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage/lib /usr/lib/aarch64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../../stage/lib/libost_io.so.2.10.0 /usr/lib/aarch64-linux-gnu/libtiff.so /usr/lib/aarch64-linux-gnu/libpng.so /usr/lib/aarch64-linux-gnu/libz.so ../../../stage/lib/libost_mol_alg.so.2.10.0 ../../../stage/lib/libost_conop.so.2.10.0 ../../../stage/lib/libost_db.so.2.10.0 /usr/lib/aarch64-linux-gnu/libsqlite3.so /usr/lib/aarch64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_thread.so.1.83.0 ../../../stage/lib/libost_seq_alg.so.2.10.0 ../../../stage/lib/libost_seq.so.2.10.0 ../../../stage/lib/libost_mol.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_iostreams.so.1.83.0 ../../../stage/lib/libost_img_alg.so.2.10.0 ../../../stage/lib/libost_img.so.2.10.0 ../../../stage/lib/libost_info.so.2.10.0 ../../../stage/lib/libost_base.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/aarch64-linux-gnu/libboost_atomic.so.1.83.0 ../../../stage/lib/libost_geom.so.2.10.0 /usr/lib/aarch64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/aarch64-linux-gnu/libQt5Xml.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Widgets.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Gui.so.5.15.15 /usr/lib/aarch64-linux-gnu/libQt5Core.so.5.15.15 /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libfftw3f_threads.so
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[100%] Built target ost_io_tests
make  -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/depend
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
cd /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/openstructure-2.10.0 /build/reproducible-path/openstructure-2.10.0/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/modules/io/tests/CMakeFiles/ost_io_tests_run.dir/DependInfo.cmake "--color="
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
make  -f modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build.make modules/io/tests/CMakeFiles/ost_io_tests_run.dir/build
make[4]: Entering directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[100%] running checks for module io
cd /build/reproducible-path/openstructure-2.10.0/modules/io/tests && env OST_ROOT=/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/stage /build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu/tests/ost_io_tests
Running 182 test cases...
unable to open database file
WARNING: skipping SEQRES import unit test. Compound lib is required
unable to open database file
WARNING: skipping mmcif_entity_poly_tests unit test. Compound library is required
unable to open database file
unable to open database file
unable to open database file
unable to open database file
unable to open database file

*** No errors detected
make[4]: Leaving directory '/build/reproducible-path/openstructure-2.10.0/obj-aarch64-linux-gnu'
[100%] Built target ost_io_tests_run
Mon Jul  6 15:07:23 UTC 2026 - pbuilder was killed by timeout after 18h.