I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 27 00:39:44 -12 2024 I: pbuilder-time-stamp: 1722083984 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [m2m-aligner_1.2-2.dsc] I: copying [./m2m-aligner_1.2.orig.tar.gz] I: copying [./m2m-aligner_1.2-2.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Apr 12 09:52:08 2016 gpgv: using RSA key F34F09744E9F5DD9 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./m2m-aligner_1.2-2.dsc: no acceptable signature found dpkg-source: info: extracting m2m-aligner in m2m-aligner-1.2 dpkg-source: info: unpacking m2m-aligner_1.2.orig.tar.gz dpkg-source: info: unpacking m2m-aligner_1.2-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 1001_fix_mispelling_errors.patch dpkg-source: info: applying 1002_fix_makefile_variables.patch dpkg-source: info: applying 1003_use_std_log_instead_of_logl.patch dpkg-source: info: applying 1004_fix_compilation_warnings.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5733/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='247413f0072f46e898f77ff73c01102e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5733' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.U4rzbzQd/pbuilderrc_j1pb --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.U4rzbzQd/b1 --logfile b1/build.log m2m-aligner_1.2-2.dsc' SUDO_GID='112' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt32b 6.1.0-23-armmp-lpae #1 SMP Debian 6.1.99-1 (2024-07-15) armv7l GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Jun 5 22:35 /bin -> usr/bin I: user script /srv/workspace/pbuilder/5733/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: cdbs, devscripts, debhelper (>= 9~), dh-buildinfo, libtclap-dev, dpkg-dev (>= 1.16.2) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on cdbs; however: Package cdbs is not installed. pbuilder-satisfydepends-dummy depends on devscripts; however: Package devscripts is not installed. pbuilder-satisfydepends-dummy depends on debhelper (>= 9~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-buildinfo; however: Package dh-buildinfo is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cdbs{a} debhelper{a} devscripts{a} dh-autoreconf{a} dh-buildinfo{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gpg{a} gpg-agent{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libassuan0{a} libb-hooks-op-check-perl{a} libclass-method-modifiers-perl{a} libclass-xsaccessor-perl{a} libclone-perl{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libksba8{a} libldap-2.5-0{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libmodule-runtime-perl{a} libmoo-perl{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0t64{a} libparams-classify-perl{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsub-quote-perl{a} libtclap-dev{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-minimal{a} python3-pkg-resources{a} python3-scour{a} python3.12{a} python3.12-minimal{a} readline-common{a} scour{a} sensible-utils{a} tzdata{a} wdiff{a} The following packages are RECOMMENDED but will NOT be installed: curl dctrl-tools debian-keyring dput dput-ng dupload equivs gnupg-utils gpg-wks-client libarchive-cpio-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libio-compress-brotli-perl libjson-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libxstring-perl licensecheck lintian lynx pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg strace unzip wget 0 packages upgraded, 106 newly installed, 0 to remove and 0 not upgraded. Need to get 35.9 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libpython3.12-minimal armhf 3.12.4-3 [798 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.2-1 [83.5 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf python3.12-minimal armhf 3.12.4-3 [1795 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf python3-minimal armhf 3.12.4-1 [26.5 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf readline-common all 8.2-4 [69.3 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf libreadline8t64 armhf 8.2-4 [145 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf libpython3.12-stdlib armhf 3.12.4-3 [1812 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf python3.12 armhf 3.12.4-3 [664 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf libpython3-stdlib armhf 3.12.4-1 [9500 B] Get: 13 http://deb.debian.org/debian unstable/main armhf python3 armhf 3.12.4-1 [27.6 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf openssl armhf 3.2.2-1 [1329 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf ca-certificates all 20240203 [158 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3 [314 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3 [98.1 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3 [42.0 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b1 [65.7 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-1 [87.8 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.7-2 [33.3 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.12.1-2 [1376 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 27 http://deb.debian.org/debian unstable/main armhf autoconf all 2.71-3 [332 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf python3-pkg-resources all 70.3.0-2 [264 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf python3-scour all 0.38.2-4.1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf scour all 0.38.2-4.1 [17.2 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf cdbs all 0.4.166 [47.3 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.16 [88.6 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-7 [517 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 41 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.191-2 [183 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5 [9075 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg-3+b1 [583 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf debhelper all 13.16 [891 kB] Get: 49 http://deb.debian.org/debian unstable/main armhf libassuan0 armhf 2.5.6-1+b1 [43.8 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf gpgconf armhf 2.2.43-8 [103 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf libksba8 armhf 1.6.7-2 [112 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-6 [18.0 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-6 [50.1 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-2 [162 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libnpth0t64 armhf 1.6-3.1 [16.9 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf dirmngr armhf 2.2.43-8 [320 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf gnupg-l10n all 2.2.43-8 [696 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf gpg armhf 2.2.43-8 [458 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf pinentry-curses armhf 1.2.1-3+b2 [74.2 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf gpg-agent armhf 2.2.43-8 [208 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf gpgsm armhf 2.2.43-8 [216 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf gnupg all 2.2.43-8 [375 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libfile-dirlist-perl all 0.05-3 [7600 B] Get: 64 http://deb.debian.org/debian unstable/main armhf libfile-which-perl all 1.27-2 [15.1 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libfile-homedir-perl all 1.006-2 [42.4 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libfile-touch-perl all 0.12-2 [8816 B] Get: 67 http://deb.debian.org/debian unstable/main armhf libio-pty-perl armhf 1:1.20-1+b1 [33.9 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libipc-run-perl all 20231003.0-2 [101 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libclass-xsaccessor-perl armhf 1.19-4+b3 [35.4 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libb-hooks-op-check-perl armhf 0.22-3+b1 [10.2 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libdevel-callchecker-perl armhf 0.009-1 [15.7 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libparams-classify-perl armhf 0.015-2+b3 [21.3 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libimport-into-perl all 1.002005-2 [11.3 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libsub-quote-perl all 2.006008-1 [21.8 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libmoo-perl all 2.005005-1 [58.0 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf libencode-locale-perl all 1.05-3 [12.9 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libhttp-date-perl all 6.06-1 [10.7 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libfile-listing-perl all 6.16-1 [12.4 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf liburi-perl all 5.28-1 [98.6 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libhtml-parser-perl armhf 3.82-1 [95.6 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf libhtml-tree-perl all 5.07-3 [211 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf libclone-perl armhf 0.46-1+b2 [13.1 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libio-html-perl all 1.004-3 [16.2 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libhttp-message-perl all 6.46-1 [79.7 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf perl-openssl-defaults armhf 7+b2 [6708 B] Get: 95 http://deb.debian.org/debian unstable/main armhf libnet-ssleay-perl armhf 1.94-1+b1 [319 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libio-socket-ssl-perl all 2.088-1 [222 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf libnet-http-perl all 6.23-1 [23.9 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libwww-perl all 6.77-1 [183 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf patchutils armhf 0.4.2-1 [72.5 kB] Get: 103 http://deb.debian.org/debian unstable/main armhf wdiff armhf 1.2.2-6 [118 kB] Get: 104 http://deb.debian.org/debian unstable/main armhf devscripts all 2.23.7 [1068 kB] Get: 105 http://deb.debian.org/debian unstable/main armhf dh-buildinfo all 0.11+nmu3 [17.1 kB] Get: 106 http://deb.debian.org/debian unstable/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] Fetched 35.9 MB in 1s (43.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19508 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.4-3_armhf.deb ... Unpacking libpython3.12-minimal:armhf (3.12.4-3) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../libexpat1_2.6.2-1_armhf.deb ... Unpacking libexpat1:armhf (2.6.2-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.4-3_armhf.deb ... Unpacking python3.12-minimal (3.12.4-3) ... Setting up libpython3.12-minimal:armhf (3.12.4-3) ... Setting up libexpat1:armhf (2.6.2-1) ... Setting up python3.12-minimal (3.12.4-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19828 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.12.4-1_armhf.deb ... Unpacking python3-minimal (3.12.4-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:armhf. Preparing to unpack .../5-libreadline8t64_8.2-4_armhf.deb ... Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8 to /lib/arm-linux-gnueabihf/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:armhf (8.2-4) ... Selecting previously unselected package libpython3.12-stdlib:armhf. Preparing to unpack .../6-libpython3.12-stdlib_3.12.4-3_armhf.deb ... Unpacking libpython3.12-stdlib:armhf (3.12.4-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../7-python3.12_3.12.4-3_armhf.deb ... Unpacking python3.12 (3.12.4-3) ... 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Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up libio-pty-perl (1:1.20-1+b1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libclone-perl:armhf (0.46-1+b2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.16) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:armhf (1:5.45-3) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:armhf (7+b2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3) ... Setting up libassuan0:armhf (2.5.6-1+b1) ... Setting up libelf1t64:armhf (0.191-2) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-6) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 27 12:40:32 UTC 2024. Universal Time is now: Sat Jul 27 12:40:32 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up gnupg-l10n (2.2.43-8) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:armhf (0.22-3+b1) ... Setting up libipc-run-perl (20231003.0-2) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-6) ... Setting up autoconf (2.71-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up netbase (6.4) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libfile-dirlist-perl (0.05-3) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up openssl (3.2.2-1) ... Setting up readline-common (8.2-4) ... Setting up libxml2:armhf (2.12.7+dfsg-3+b1) ... Setting up liburi-perl (5.28-1) ... Setting up libfile-touch-perl (0.12-2) ... Setting up libnet-ssleay-perl:armhf (1.94-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up pinentry-curses (1.2.1-3+b2) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-7) ... Setting up libnet-http-perl (6.23-1) ... Setting up libdevel-callchecker-perl:armhf (0.009-1) ... Setting up libldap-2.5-0:armhf (2.5.18+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libreadline8t64:armhf (8.2-4) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:armhf (3.82-1) ... Setting up gpgconf (2.2.43-8) ... Setting up libio-socket-ssl-perl (2.088-1) ... Setting up gpg (2.2.43-8) ... Setting up libhttp-message-perl (6.46-1) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up gpg-agent (2.2.43-8) ... Setting up libpython3.12-stdlib:armhf (3.12.4-3) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up python3.12 (3.12.4-3) ... Setting up libparams-classify-perl:armhf (0.015-2+b3) ... Setting up gpgsm (2.2.43-8) ... Setting up man-db (2.12.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dirmngr (2.2.43-8) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up gnupg (2.2.43-8) ... Setting up libpython3-stdlib:armhf (3.12.4-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up debhelper (13.16) ... Setting up python3 (3.12.4-1) ... Setting up dh-buildinfo (0.11+nmu3) ... Setting up python3-pkg-resources (70.3.0-2) ... Setting up python3-scour (0.38.2-4.1) ... Setting up scour (0.38.2-4.1) ... Setting up cdbs (0.4.166) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up devscripts (2.23.7) ... Processing triggers for libc-bin (2.39-6) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.33-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/m2m-aligner-1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../m2m-aligner_1.2-2_source.changes dpkg-buildpackage: info: source package m2m-aligner dpkg-buildpackage: info: source version 1.2-2 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Giulio Paci dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean CDBS WARNING: copyright-check disabled - licensecheck is missing. test -x debian/rules rm -f debian/stamp-makefile-build debian/stamp-makefile-install /usr/bin/make -C . "GNUREC=-ffast-math -funroll-all-loops -fpeel-loops -ftracer -funswitch-loops" "CPPFLAGS=-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/m2m-aligner-1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wl,--no-undefined -c" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/m2m-aligner-1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -Wall -Wl,--no-undefined" -k clean make[1]: Entering directory '/build/reproducible-path/m2m-aligner-1.2' rm -f m2m-aligner mmAligner.o mmEM.o make[1]: Leaving directory '/build/reproducible-path/m2m-aligner-1.2' rm -f debian/copyright_newhints rm -f debian/cdbs-install-list debian/cdbs-package-list debian/stamp-copyright-check rm -rf "debian/upstream-cruft" rm -f debian/stamp-upstream-cruft dh_clean dh_clean: warning: Compatibility levels before 10 are deprecated (level 9 in use) debian/rules build CDBS WARNING: copyright-check disabled - licensecheck is missing. test -x debian/rules mkdir -p "." CDBS WARNING: DEB_COPYRIGHT_CHECK_IGNORE_REGEX is deprecated since 0.4.133 Scanning upstream source for new/changed copyright notices... set -e; LC_ALL=C.UTF-8 /usr/bin/licensecheck --check '.*' --recursive --copyright --deb-fmt --ignore '^debian/(changelog|copyright(_hints|_newhints)?)$|^.*[.](gif)$' --lines 0 -- * | /usr/lib/cdbs/licensecheck2dep5 > debian/copyright_newhints /bin/sh: 1: /usr/bin/licensecheck: not found 0 combinations of copyright and licensing found. WARNING: New or changed notices discovered: Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ To fix the situation please do the following: 1) Examine debian/copyright_* and referenced files 2) Update debian/copyright as needed 3) Replace debian/copyright_hints with debian/copyright_newhints touch debian/stamp-copyright-check touch debian/stamp-upstream-cruft /usr/bin/make -C . "GNUREC=-ffast-math -funroll-all-loops -fpeel-loops -ftracer -funswitch-loops" "CPPFLAGS=-D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/m2m-aligner-1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wall -Wl,--no-undefined -c" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/m2m-aligner-1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -Wall -Wl,--no-undefined" make[1]: Entering directory '/build/reproducible-path/m2m-aligner-1.2' g++ -ffast-math -funroll-all-loops -fpeel-loops -ftracer -funswitch-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/m2m-aligner-1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -Wall -Wl,--no-undefined mmAligner.cpp -o mmAligner.o g++ -ffast-math -funroll-all-loops -fpeel-loops -ftracer -funswitch-loops -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/m2m-aligner-1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -Wall -Wl,--no-undefined mmEM.cpp -o mmEM.o mmEM.cpp: In member function 'vector_2Double mmEM::backwardEval(param, vector_str, vector_str)': mmEM.cpp:323:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 323 | if ((xl < x.size()) || (yl < y.size())) | ~~~^~~~~~~~~~ mmEM.cpp:323:52: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 323 | if ((xl < x.size()) || (yl < y.size())) | ~~~^~~~~~~~~~ mmEM.cpp:328:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 328 | if ((xl < x.size()) && (myParam.delX)) | ~~~^~~~~~~~~~ mmEM.cpp:338:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 338 | if ((yl < y.size()) && (myParam.delY)) | ~~~^~~~~~~~~~ mmEM.cpp:348:33: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 348 | if ((xl < x.size()) && (yl < y.size())) | ~~~^~~~~~~~~~ mmEM.cpp:348:52: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector >::size_type' {aka 'unsigned int'} [-Wsign-compare] 348 | if ((xl < x.size()) && (yl < y.size())) | ~~~^~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algobase.h:71, from /usr/include/c++/14/string:51, from param.h:23, from mmEM.h:23, from mmEM.cpp:21: /usr/include/c++/14/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(QTABLE, QTABLE)]': /usr/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 157 | operator()(_Iterator1 __it1, _Iterator2 __it2) | ^~~~~~~~ /usr/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/predefined_ops.h: In function 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = __gnu_cxx::__normal_iterator >; _Iterator2 = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(INITTABLE, INITTABLE)]': /usr/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/predefined_ops.h:157:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In file included from /usr/include/c++/14/map:62, from mmEM.h:25: /usr/include/c++/14/bits/stl_tree.h: In function 'std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >&>, std::tuple<>}; _Key = std::__cxx11::basic_string; _Val = std::pair, long double>; _KeyOfValue = std::_Select1st, long double> >; _Compare = std::less >; _Alloc = std::allocator, long double> >]': /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: /usr/include/c++/14/bits/stl_map.h: In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]': /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'long double mmEM::maximization(param)' at mmEM.cpp:254:26: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'long double mmEM::maximization(param)' at mmEM.cpp:260:25: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'long double mmEM::maximization(param)' at mmEM.cpp:283:53: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'long double mmEM::maximization(param)' at mmEM.cpp:284:36: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'vector_2Double mmEM::forwardEval(param, vector_str, vector_str)' at mmEM.cpp:440:38: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'vector_2Double mmEM::backwardEval(param, vector_str, vector_str)' at mmEM.cpp:368:37: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'bool mmEM::expectation(param, vector_str, vector_str)' at mmEM.cpp:539:56: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'bool mmEM::expectation(param, vector_str, vector_str)' at mmEM.cpp:543:23: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'long double mmEM::viterbi_align(param, vector_str, vector_str, std::vector >*, std::vector >*)' at mmEM.cpp:997:65: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/bits/stl_algo.h:61, from /usr/include/c++/14/algorithm:61, from mmEM.h:32: /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = QTABLE; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h:1777:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1777 | if (__comp(__i, __first)) | ~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1750:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1750 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1770 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1770:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1868:25, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1884:27: /usr/include/c++/14/bits/stl_algo.h:1593:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1593 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1855:34, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1889:38: /usr/include/c++/14/bits/stl_algo.h:90:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 90 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:92:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 92 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:97:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 97 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:99:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 99 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'std::vector mmEM::nViterbi_align(param, vector_str, vector_str, vector_2str&, vector_2str&)' at mmEM.cpp:815:77: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function '_RandomAccessIterator std::__partial_sort_copy(_InputIterator, _InputIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _InputIterator = __gnu_cxx::__normal_iterator >; _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from '_RAIter std::partial_sort_copy(_IIter, _IIter, _RAIter, _RAIter, _Compare) [with _IIter = __gnu_cxx::__normal_iterator >; _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(QTABLE, QTABLE)]' at /usr/include/c++/14/bits/stl_algo.h:1739:38, inlined from 'std::vector mmEM::nViterbi_align(param, vector_str, vector_str, vector_2str&, vector_2str&)' at mmEM.cpp:832:22: /usr/include/c++/14/bits/stl_algo.h:1625:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1625 | std::__make_heap(__result_first, __result_real_last, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1625:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(QTABLE, QTABLE)]' at /usr/include/c++/14/bits/stl_algo.h:4804:18, inlined from 'std::vector mmEM::nViterbi_align(param, vector_str, vector_str, vector_2str&, vector_2str&)' at mmEM.cpp:839:6: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(QTABLE, QTABLE)]' at /usr/include/c++/14/bits/stl_algo.h:4804:18, inlined from 'std::vector mmEM::nViterbi_align(param, vector_str, vector_str, vector_2str&, vector_2str&)' at mmEM.cpp:839:6: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__push_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = INITTABLE; _Compare = __gnu_cxx::__ops::_Iter_comp_val]': /usr/include/c++/14/bits/stl_heap.h:135:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 135 | __push_heap(_RandomAccessIterator __first, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = INITTABLE; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:224:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:232:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 232 | if (__comp(__first + __secondChild, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ 233 | __first + (__secondChild - 1))) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 340 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:340:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_heap.h: In function 'void std::__pop_heap(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_heap.h:254:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 254 | __pop_heap(_RandomAccessIterator __first, _RandomAccessIterator __last, | ^~~~~~~~~~ /usr/include/c++/14/bits/stl_heap.h:254:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_heap.h:254:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1876 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1876:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 In function 'void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__partial_sort(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1868:25, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1884:27: /usr/include/c++/14/bits/stl_algo.h:1593:23: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1593 | std::__make_heap(__first, __middle, __comp); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In function 'void std::__move_median_to_first(_Iterator, _Iterator, _Iterator, _Iterator, _Compare) [with _Iterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1855:34, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1889:38: /usr/include/c++/14/bits/stl_algo.h:88:17: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 88 | if (__comp(__a, __b)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:90:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 90 | if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:92:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 92 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:97:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 97 | else if (__comp(__a, __c)) | ~~~~~~^~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:99:22: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 99 | else if (__comp(__b, __c)) | ~~~~~~^~~~~~~~~~ In function '_RandomAccessIterator std::__unguarded_partition(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from '_RandomAccessIterator std::__unguarded_partition_pivot(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1857:40, inlined from 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1889:38: /usr/include/c++/14/bits/stl_algo.h:1835:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1835 | while (__comp(__first, __pivot)) | ~~~~~~^~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1838:24: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1838 | while (__comp(__pivot, __last)) | ~~~~~~^~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h: In function 'void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]': /usr/include/c++/14/bits/stl_algo.h:1890:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1890 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'void mmEM::initialization(param, vector_2str, vector_2str)' at mmEM.cpp:118:35: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'void mmEM::initialization(param, vector_2str, vector_2str)' at mmEM.cpp:128:35: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function 'std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string; _Tp = long double; _Compare = std::less >; _Alloc = std::allocator, long double> >]', inlined from 'void mmEM::initialization(param, vector_2str, vector_2str)' at mmEM.cpp:149:22: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type 'std::_Rb_tree, std::pair, long double>, std::_Select1st, long double> >, std::less >, std::allocator, long double> > >::const_iterator' changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In function 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(INITTABLE, INITTABLE)]' at /usr/include/c++/14/bits/stl_algo.h:4804:18, inlined from 'void mmEM::initialization(param, vector_2str, vector_2str)' at mmEM.cpp:207:7: /usr/include/c++/14/bits/stl_algo.h:1905:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1905 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1906 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1907 | __comp); | ~~~~~~~ In function 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]', inlined from 'void std::__sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter]' at /usr/include/c++/14/bits/stl_algo.h:1908:31, inlined from 'void std::sort(_RAIter, _RAIter, _Compare) [with _RAIter = __gnu_cxx::__normal_iterator >; _Compare = bool (*)(INITTABLE, INITTABLE)]' at /usr/include/c++/14/bits/stl_algo.h:4804:18, inlined from 'void mmEM::initialization(param, vector_2str, vector_2str)' at mmEM.cpp:207:7: /usr/include/c++/14/bits/stl_algo.h:1817:32: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1817 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_algo.h:1822:30: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator >' changed in GCC 7.1 1822 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ g++ -ffast-math -funroll-all-loops -fpeel-loops -ftracer -funswitch-loops mmAligner.o mmEM.o -Wl,-z,relro -Wl,-z,now -o m2m-aligner -lgcc_s -lpthread -lc -lm make[1]: Leaving directory '/build/reproducible-path/m2m-aligner-1.2' touch debian/stamp-makefile-build CDBS WARNING: DEB_MAKE_CHECK_TARGET unset, not running checks fakeroot debian/rules binary CDBS WARNING: copyright-check disabled - licensecheck is missing. test -x debian/rules dh_testroot dh_prep dh_installdirs -A dh_installdirs: warning: Compatibility levels before 10 are deprecated (level 9 in use) mkdir -p "." CDBS WARNING: DEB_COPYRIGHT_CHECK_IGNORE_REGEX is deprecated since 0.4.133 CDBS WARNING: DEB_MAKE_CHECK_TARGET unset, not running checks CDBS WARNING: DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk common-install target Adding cdbs dependencies to debian/m2m-aligner.substvars dh_installdirs -pm2m-aligner \ dh_installdirs: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installdocs -pm2m-aligner ./README dh_installdocs: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installexamples -pm2m-aligner toAlignEx dh_installexamples: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installman -pm2m-aligner dh_installman: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installinfo -pm2m-aligner dh_installinfo: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installmenu -pm2m-aligner dh_installcron -pm2m-aligner dh_systemd_enable -pm2m-aligner dh_systemd_enable: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installinit -pm2m-aligner dh_installinit: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installdebconf -pm2m-aligner dh_installemacsen -pm2m-aligner dh_installcatalogs -pm2m-aligner dh_installpam -pm2m-aligner dh_installpam: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installlogrotate -pm2m-aligner dh_installlogcheck -pm2m-aligner dh_installchangelogs -pm2m-aligner dh_installchangelogs: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installudev -pm2m-aligner dh_lintian -pm2m-aligner dh_bugfiles -pm2m-aligner dh_install -pm2m-aligner dh_install: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_systemd_start -pm2m-aligner dh_systemd_start: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_link -pm2m-aligner dh_buildinfo -pm2m-aligner dh_installmime -pm2m-aligner dh_installgsettings -pm2m-aligner dh_strip -pm2m-aligner dh_strip: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_strip_nondeterminism -pm2m-aligner dh_compress -pm2m-aligner dh_compress: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_fixperms -pm2m-aligner dh_makeshlibs -pm2m-aligner dh_makeshlibs: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_installdeb -pm2m-aligner dh_installdeb: warning: Compatibility levels before 10 are deprecated (level 9 in use) dh_perl -pm2m-aligner dh_shlibdeps -pm2m-aligner dh_shlibdeps: warning: Compatibility levels before 10 are deprecated (level 9 in use) dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/m2m-aligner/usr/bin/m2m-aligner contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_gencontrol -pm2m-aligner -- '-Vmisc:Built-Using=tclap (= 1.2.5-1)' dh_gencontrol: warning: Compatibility levels before 10 are deprecated (level 9 in use) # only call dh_scour for packages in main if grep -q '^Component:[[:space:]]*main' /CurrentlyBuilding 2>/dev/null; then dh_scour -pm2m-aligner ; fi dh_md5sums -pm2m-aligner dh_builddeb -pm2m-aligner dpkg-deb: building package 'm2m-aligner-dbgsym' in '../m2m-aligner-dbgsym_1.2-2_armhf.deb'. dpkg-deb: building package 'm2m-aligner' in '../m2m-aligner_1.2-2_armhf.deb'. dpkg-genbuildinfo --build=binary -O../m2m-aligner_1.2-2_armhf.buildinfo dpkg-genchanges --build=binary -O../m2m-aligner_1.2-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5733 and its subdirectories I: Current time: Sat Jul 27 00:41:53 -12 2024 I: pbuilder-time-stamp: 1722084113