I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 23 14:59:28 -12 2024 I: pbuilder-time-stamp: 1732417168 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde.dsc] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz] I: copying [./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Jan 22 18:07:34 2023 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde.dsc: no acceptable signature found dpkg-source: info: extracting ngmlr in ngmlr-0.2.7+git20210816.a2a31fb+dfsg dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg.orig.tar.gz dpkg-source: info: unpacking ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-system-libs.patch dpkg-source: info: applying spellings.patch dpkg-source: info: applying simde.patch dpkg-source: info: applying VarArgsDefines.patch dpkg-source: info: applying AlignmentBuffer_noMatch.patch dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14201/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=3 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='ba05e66a91584e3eb90452893d47a246' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14201' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gTecviRB/pbuilderrc_lT6p --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gTecviRB/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:3142/' I: uname -a Linux virt64c 6.1.0-27-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/14201/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, zlib1g-dev, libssw-dev, libtclap-dev, libhts-dev, libsimde-dev (>= 0.7.3~0git20230118123246.d1e75cd) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libssw-dev; however: Package libssw-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libsimde-dev (>= 0.7.3~0git20230118123246.d1e75cd); however: Package libsimde-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libcurl4t64{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsimde-dev{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libssw-dev{a} libssw0{a} libtasn1-6-dev{a} libtclap-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libssl3 libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 48.9 MB of archives. After unpacking 177 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 2 http://deb.debian.org/debian unstable/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 3 http://deb.debian.org/debian unstable/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian unstable/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian unstable/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 8 http://deb.debian.org/debian unstable/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian unstable/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 10 http://deb.debian.org/debian unstable/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 11 http://deb.debian.org/debian unstable/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian unstable/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian unstable/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian unstable/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main armhf autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian unstable/main armhf cmake-data all 3.31.1-1 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 20 http://deb.debian.org/debian unstable/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian unstable/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian unstable/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 24 http://deb.debian.org/debian unstable/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 25 http://deb.debian.org/debian unstable/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 26 http://deb.debian.org/debian unstable/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian unstable/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 28 http://deb.debian.org/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 29 http://deb.debian.org/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 30 http://deb.debian.org/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 31 http://deb.debian.org/debian unstable/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 32 http://deb.debian.org/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 33 http://deb.debian.org/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 34 http://deb.debian.org/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 35 http://deb.debian.org/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 36 http://deb.debian.org/debian unstable/main armhf libcurl4t64 armhf 8.11.0-1 [303 kB] Get: 37 http://deb.debian.org/debian unstable/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 38 http://deb.debian.org/debian unstable/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 39 http://deb.debian.org/debian unstable/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 40 http://deb.debian.org/debian unstable/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 41 http://deb.debian.org/debian unstable/main armhf cmake armhf 3.31.1-1 [5747 kB] Get: 42 http://deb.debian.org/debian unstable/main armhf comerr-dev armhf 2.1-1.47.1-1+b1 [54.3 kB] Get: 43 http://deb.debian.org/debian unstable/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian unstable/main armhf libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main armhf dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 50 http://deb.debian.org/debian unstable/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 51 http://deb.debian.org/debian unstable/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 52 http://deb.debian.org/debian unstable/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main armhf debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main armhf libgssrpc4t64 armhf 1.21.3-3 [52.5 kB] Get: 56 http://deb.debian.org/debian unstable/main armhf libkadm5clnt-mit12 armhf 1.21.3-3 [37.0 kB] Get: 57 http://deb.debian.org/debian unstable/main armhf libkdb5-10t64 armhf 1.21.3-3 [37.1 kB] Get: 58 http://deb.debian.org/debian unstable/main armhf libkadm5srv-mit12 armhf 1.21.3-3 [46.7 kB] Get: 59 http://deb.debian.org/debian unstable/main armhf krb5-multidev armhf 1.21.3-3 [126 kB] Get: 60 http://deb.debian.org/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b6 [293 kB] Get: 61 http://deb.debian.org/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB] Get: 62 http://deb.debian.org/debian unstable/main armhf libnghttp3-9 armhf 1.4.0-1+b1 [55.0 kB] Get: 63 http://deb.debian.org/debian unstable/main armhf libngtcp2-16 armhf 1.6.0-1 [118 kB] Get: 64 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.6.0-1 [17.1 kB] Get: 65 http://deb.debian.org/debian unstable/main armhf libcurl3t64-gnutls armhf 8.11.0-1 [310 kB] Get: 66 http://deb.debian.org/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB] Get: 67 http://deb.debian.org/debian unstable/main armhf libunbound8 armhf 1.22.0-1 [539 kB] Get: 68 http://deb.debian.org/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.8-2 [440 kB] Get: 69 http://deb.debian.org/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.8-2 [440 kB] Get: 70 http://deb.debian.org/debian unstable/main armhf libidn2-dev armhf 2.3.7-2+b1 [119 kB] Get: 71 http://deb.debian.org/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-2+b1 [208 kB] Get: 72 http://deb.debian.org/debian unstable/main armhf libtasn1-6-dev armhf 4.19.0-3+b3 [93.2 kB] Get: 73 http://deb.debian.org/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-2+b2 [328 kB] Get: 74 http://deb.debian.org/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-2+b2 [593 kB] Get: 75 http://deb.debian.org/debian unstable/main armhf nettle-dev armhf 3.10-1+b1 [1313 kB] Get: 76 http://deb.debian.org/debian unstable/main armhf libgnutls28-dev armhf 3.8.8-2 [1328 kB] Get: 77 http://deb.debian.org/debian unstable/main armhf libkrb5-dev armhf 1.21.3-3 [15.8 kB] Get: 78 http://deb.debian.org/debian unstable/main armhf libldap-dev armhf 2.5.18+dfsg-3+b1 [282 kB] Get: 79 http://deb.debian.org/debian unstable/main armhf libpkgconf3 armhf 1.8.1-4 [31.8 kB] Get: 80 http://deb.debian.org/debian unstable/main armhf pkgconf-bin armhf 1.8.1-4 [29.2 kB] Get: 81 http://deb.debian.org/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB] Get: 82 http://deb.debian.org/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1 [103 kB] Get: 83 http://deb.debian.org/debian unstable/main armhf libnghttp3-dev armhf 1.4.0-1+b1 [79.8 kB] Get: 84 http://deb.debian.org/debian unstable/main armhf libngtcp2-crypto-gnutls-dev armhf 1.6.0-1 [22.1 kB] Get: 85 http://deb.debian.org/debian unstable/main armhf libngtcp2-dev armhf 1.6.0-1 [168 kB] Get: 86 http://deb.debian.org/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB] Get: 87 http://deb.debian.org/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 88 http://deb.debian.org/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB] Get: 89 http://deb.debian.org/debian unstable/main armhf libssl-dev armhf 3.3.2-2 [2385 kB] Get: 90 http://deb.debian.org/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB] Get: 91 http://deb.debian.org/debian unstable/main armhf libzstd-dev armhf 1.5.6+dfsg-1+b1 [327 kB] Get: 92 http://deb.debian.org/debian unstable/main armhf libcurl4-gnutls-dev armhf 8.11.0-1 [434 kB] Get: 93 http://deb.debian.org/debian unstable/main armhf libdeflate0 armhf 1.22-1 [36.3 kB] Get: 94 http://deb.debian.org/debian unstable/main armhf libdeflate-dev armhf 1.22-1 [44.5 kB] Get: 95 http://deb.debian.org/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-1 [63.1 kB] Get: 96 http://deb.debian.org/debian unstable/main armhf libhts3t64 armhf 1.20+ds-2 [401 kB] Get: 97 http://deb.debian.org/debian unstable/main armhf liblzma-dev armhf 5.6.3-1+b1 [304 kB] Get: 98 http://deb.debian.org/debian unstable/main armhf libhts-dev armhf 1.20+ds-2 [1625 kB] Get: 99 http://deb.debian.org/debian unstable/main armhf libsimde-dev all 0.8.2-1 [465 kB] Get: 100 http://deb.debian.org/debian unstable/main armhf libssw0 armhf 1.1-15+b1 [21.6 kB] Get: 101 http://deb.debian.org/debian unstable/main armhf libssw-dev armhf 1.1-15+b1 [24.7 kB] Get: 102 http://deb.debian.org/debian unstable/main armhf libtclap-dev armhf 1.2.5-1+b1 [3359 kB] Fetched 48.9 MB in 2s (26.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19686 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-6_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-6_armhf.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../003-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../004-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../005-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../006-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../007-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../008-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../009-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../010-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../012-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../013-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../014-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. 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Selecting previously unselected package libgnutls-dane0t64:armhf. Preparing to unpack .../067-libgnutls-dane0t64_3.8.8-2_armhf.deb ... Unpacking libgnutls-dane0t64:armhf (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:armhf. Preparing to unpack .../068-libgnutls-openssl27t64_3.8.8-2_armhf.deb ... Unpacking libgnutls-openssl27t64:armhf (3.8.8-2) ... Selecting previously unselected package libidn2-dev:armhf. Preparing to unpack .../069-libidn2-dev_2.3.7-2+b1_armhf.deb ... Unpacking libidn2-dev:armhf (2.3.7-2+b1) ... Selecting previously unselected package libp11-kit-dev:armhf. Preparing to unpack .../070-libp11-kit-dev_0.25.5-2+b1_armhf.deb ... Unpacking libp11-kit-dev:armhf (0.25.5-2+b1) ... Selecting previously unselected package libtasn1-6-dev:armhf. Preparing to unpack .../071-libtasn1-6-dev_4.19.0-3+b3_armhf.deb ... Unpacking libtasn1-6-dev:armhf (4.19.0-3+b3) ... Selecting previously unselected package libgmpxx4ldbl:armhf. 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Setting up libdeflate0:armhf (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ... Setting up libcom-err2:armhf (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:armhf (0.192-4) ... Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ... Setting up libkrb5support0:armhf (1.21.3-3) ... Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-8) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:armhf (1.22.0-1) ... Setting up libpkgconf3:armhf (1.8.1-4) ... Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-2+b2) ... Setting up libgnutls-dane0t64:armhf (3.8.8-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:armhf (1.9.6-3) ... Setting up libproc2-0:armhf (2:4.0.4-6) ... Setting up comerr-dev:armhf (2.1-1.47.1-1+b1) ... Setting up libssl-dev:armhf (3.3.2-2) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:armhf (1.21.3-3) ... Setting up libidn2-dev:armhf (2.3.7-2+b1) ... Setting up libsasl2-2:armhf (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up libtclap-dev (1.2.5-1+b1) ... Setting up libnghttp3-9:armhf (1.4.0-1+b1) ... Setting up libnghttp3-dev:armhf (1.4.0-1+b1) ... Setting up liblzma-dev:armhf (5.6.3-1+b1) ... Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b2) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:armhf (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libngtcp2-16:armhf (1.6.0-1) ... Setting up cmake-data (3.31.1-1) ... Setting up librhash1:armhf (1.4.5-1) ... Setting up libkrb5-3:armhf (1.21.3-3) ... Setting up libssh2-1t64:armhf (1.11.1-1) ... Setting up libtasn1-6-dev:armhf (4.19.0-3+b3) ... Setting up libdeflate-dev:armhf (1.22-1) ... Setting up libssw0:armhf (1.1-15+b1) ... Setting up libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_auto_clean rm -rf bin make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.3.1") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Performing Test COMPILER_SUPPORTS_CXX11 -- Performing Test COMPILER_SUPPORTS_CXX11 - Success CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. 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-I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp [ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp [ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp [ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp [ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp [ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:36: note: directive argument in the range [-2147483647, 2147483647] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:7: In function ‘int sprintf(char*, const char*, ...)’, inlined from ‘std::string add_timestamp(std::string)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:10: /usr/include/arm-linux-gnueabihf/bits/stdio2.h:30:34: note: ‘__builtin___sprintf_chk’ output between 20 and 72 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp [ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:108: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 56 | Log.Message("ngmlr %s%s (build: %s %s, start: %s)", version.str().c_str(), cDebug ? " debug" : "", __DATE__, __TIME__, currentDateTime().c_str()); | ^~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp [ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -MF CMakeFiles/ngmlr.dir/ReadProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ReadProvider.cpp [ 68%] Building CXX object src/CMakeFiles/ngmlr.dir/SamParser.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SamParser.cpp.o -MF CMakeFiles/ngmlr.dir/SamParser.cpp.o.d -o CMakeFiles/ngmlr.dir/SamParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SamParser.cpp [ 72%] Building CXX object src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -MF CMakeFiles/ngmlr.dir/SAMWriter.cpp.o.d -o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SAMWriter.cpp [ 76%] Building CXX object src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -MF CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o.d -o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp [ 80%] Building CXX object src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.h:9, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:5: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:349:16: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:350:16: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:351:16: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:354:24: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:355:16: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = _SequenceProvider::RefIdx; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘virtual void _SequenceProvider::Init(bool)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/SequenceProvider.cpp:394:31: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o -MF CMakeFiles/ngmlr.dir/unix_threads.cpp.o.d -o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix_threads.cpp In file included from /usr/include/c++/14/map:62, from /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:17: /usr/include/c++/14/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/14/bits/stl_tree.h:2454:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2454 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/map:63: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘const int CreateMapping(const char*, const char*&)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:121:15: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘uloc GetMapLength(int)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:133:24: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void Remap(int, const char*&)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:144:40: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void Remap(int, const char*&)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:145:31: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void Remap(int, const char*&)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:156:20: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void CloseMapping(int)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:164:35: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = std::pair; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘void CloseMapping(int)’ at /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp:164:62: /usr/include/c++/14/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [100%] Linking CXX executable /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/ngmlr.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/ngmlr.dir/link.d CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o CMakeFiles/ngmlr.dir/ArgParser.cpp.o CMakeFiles/ngmlr.dir/CS.cpp.o CMakeFiles/ngmlr.dir/CSstatic.cpp.o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o CMakeFiles/ngmlr.dir/Logging.cpp.o CMakeFiles/ngmlr.dir/MappedRead.cpp.o CMakeFiles/ngmlr.dir/main.cpp.o CMakeFiles/ngmlr.dir/NGM.cpp.o CMakeFiles/ngmlr.dir/NGMTask.cpp.o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o CMakeFiles/ngmlr.dir/ReadProvider.cpp.o CMakeFiles/ngmlr.dir/SamParser.cpp.o CMakeFiles/ngmlr.dir/SAMWriter.cpp.o CMakeFiles/ngmlr.dir/SequenceProvider.cpp.o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o CMakeFiles/ngmlr.dir/unix.cpp.o CMakeFiles/ngmlr.dir/unix_threads.cpp.o -o /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/bin/ngmlr-0.2.8/ngmlr -lz -lssw make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' [100%] Built target ngmlr make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' dh_auto_test -O--buildsystem=cmake create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/ngmlr/ -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j3 install DESTDIR=/build/reproducible-path/ngmlr-0.2.7\+git20210816.a2a31fb\+dfsg/debian/ngmlr AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg -B/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/debian/ngmlr/usr/bin/ngmlr make[1]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-arm-linux-gnueabihf' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/ngmlr/usr/bin/ngmlr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'ngmlr' in '../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde_armhf.deb'. dpkg-deb: building package 'ngmlr-dbgsym' in '../ngmlr-dbgsym_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde_armhf.deb'. dpkg-genbuildinfo --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde_armhf.buildinfo dpkg-genchanges --build=binary -O../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-4~0exp0simde_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14201 and its subdirectories I: Current time: Sat Nov 23 15:01:20 -12 2024 I: pbuilder-time-stamp: 1732417280