I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 2 19:53:11 +14 2026 I: pbuilder-time-stamp: 1790920391 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D01_modify_environment starting debug: Running on ionos5-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 2 05:53 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=2e06034207574cb1a54c245f6483f5f4 LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3944353 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.drDu2kpA/pbuilderrc_Bmj6 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.drDu2kpA/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 33.6 MB of archives. After unpacking 123 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-1 [94.7 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.19-8 [294 kB] Get: 15 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 cmake-data all 3.31.6-2 [2268 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 27 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 28 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 cmake amd64 3.31.6-2 [12.0 MB] Get: 48 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 49 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.14.2-1 [19.8 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.14.2-1 [8768 B] Get: 54 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 googletest all 1.16.0-1 [517 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libbiosoup-dev all 0.11.0-3 [7972 B] Get: 62 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libbioparser-dev all 3.1.0-2 [9208 B] Get: 64 http://deb.debian.org/debian forky/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.4 [98.1 kB] Get: 65 http://deb.debian.org/debian forky/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libedlib1 amd64 1.2.7-6+b3 [18.1 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 libedlib-dev amd64 1.2.7-6+b3 [23.3 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 71 http://deb.debian.org/debian forky/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 72 http://deb.debian.org/debian forky/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 33.6 MB in 1s (22.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19855 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-1_amd64.deb ... Unpacking bsdextrautils (2.41.1-1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_amd64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2-16:amd64. Preparing to unpack .../19-libxml2-16_2.14.5+dfsg-0.2_amd64.deb ... Unpacking libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../20-libarchive13t64_3.7.4-4+b1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../22-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../23-libcom-err2_1.47.2-3+b3_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../24-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../25-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../26-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory 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CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd 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-c /build/reproducible-path/racon-1.5.0/src/main.cpp /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (11 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000506 s [racon::Polisher::initialize] loaded sequences 0.031218 s [racon::Polisher::initialize] loaded overlaps 0.000367 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.020484 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.030249 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039951 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048771 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.059328 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.069175 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.093261 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.105020 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.114516 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.122923 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.134532 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.144695 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.155669 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.161159 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.170705 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.193680 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.200790 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.209895 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.222551 s [racon::Polisher::initialize] aligning overlaps [====================] 0.231603 s [racon::Polisher::initialize] transformed data into windows 0.001709 s [racon::Polisher::polish] generating consensus [=> ] 0.018530 s [racon::Polisher::polish] generating consensus [==> ] 0.033150 s [racon::Polisher::polish] generating consensus [===> ] 0.047306 s [racon::Polisher::polish] generating consensus [====> ] 0.059249 s [racon::Polisher::polish] generating consensus [=====> ] 0.065544 s [racon::Polisher::polish] generating consensus [======> ] 0.073309 s [racon::Polisher::polish] generating consensus [=======> ] 0.080924 s [racon::Polisher::polish] generating consensus [========> ] 0.095625 s [racon::Polisher::polish] generating consensus [=========> ] 0.107786 s [racon::Polisher::polish] generating consensus [==========> ] 0.122234 s [racon::Polisher::polish] generating consensus [===========> ] 0.143108 s [racon::Polisher::polish] generating consensus [============> ] 0.159506 s [racon::Polisher::polish] generating consensus [=============> ] 0.188426 s [racon::Polisher::polish] generating consensus [==============> ] 0.219978 s [racon::Polisher::polish] generating consensus [===============> ] 0.246237 s [racon::Polisher::polish] generating consensus [================> ] 0.264038 s [racon::Polisher::polish] generating consensus [=================> ] 0.288308 s [racon::Polisher::polish] generating consensus [==================> ] 0.302259 s [racon::Polisher::polish] generating consensus [===================>] 0.315929 s [racon::Polisher::polish] generating consensus [====================] 0.392043 s [racon::Polisher::] total = 0.670405 s [ OK ] RaconPolishingTest.ConsensusWithQualities (683 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000408 s [racon::Polisher::initialize] loaded sequences 0.012608 s [racon::Polisher::initialize] loaded overlaps 0.000264 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.017121 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026125 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038218 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046796 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057572 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067297 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.090931 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102650 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112234 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120562 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132200 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142333 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153257 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.158689 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.166112 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.181675 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.187276 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.196210 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.209378 s [racon::Polisher::initialize] aligning overlaps [====================] 0.225111 s [racon::Polisher::initialize] transformed data into windows 0.000493 s [racon::Polisher::polish] generating consensus [=> ] 0.020802 s [racon::Polisher::polish] generating consensus [==> ] 0.039278 s [racon::Polisher::polish] generating consensus [===> ] 0.059015 s [racon::Polisher::polish] generating consensus [====> ] 0.075074 s [racon::Polisher::polish] generating consensus [=====> ] 0.086938 s [racon::Polisher::polish] generating consensus [======> ] 0.098626 s [racon::Polisher::polish] generating consensus [=======> ] 0.109416 s [racon::Polisher::polish] generating consensus [========> ] 0.118326 s [racon::Polisher::polish] generating consensus [=========> ] 0.129667 s [racon::Polisher::polish] generating consensus [==========> ] 0.150416 s [racon::Polisher::polish] generating consensus [===========> ] 0.183416 s [racon::Polisher::polish] generating consensus [============> ] 0.221225 s [racon::Polisher::polish] generating consensus [=============> ] 0.251186 s [racon::Polisher::polish] generating consensus [==============> ] 0.292256 s [racon::Polisher::polish] generating consensus [===============> ] 0.326930 s [racon::Polisher::polish] generating consensus [================> ] 0.359435 s [racon::Polisher::polish] generating consensus [=================> ] 0.385399 s [racon::Polisher::polish] generating consensus [==================> ] 0.405349 s [racon::Polisher::polish] generating consensus [===================>] 0.427577 s [racon::Polisher::polish] generating consensus [====================] 0.533501 s [racon::Polisher::] total = 0.784948 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (796 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000424 s [racon::Polisher::initialize] loaded sequences 0.029357 s [racon::Polisher::initialize] loaded overlaps 0.017133 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.002319 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002412 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002514 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002628 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002653 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002730 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002850 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003016 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003064 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003194 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003333 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003409 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003482 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003591 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003710 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003855 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003913 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003969 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004045 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004058 s [racon::Polisher::initialize] transformed data into windows 0.001612 s [racon::Polisher::polish] generating consensus [=> ] 0.018912 s [racon::Polisher::polish] generating consensus [==> ] 0.033862 s [racon::Polisher::polish] generating consensus [===> ] 0.047367 s [racon::Polisher::polish] generating consensus [====> ] 0.059049 s [racon::Polisher::polish] generating consensus [=====> ] 0.066173 s [racon::Polisher::polish] generating consensus [======> ] 0.073424 s [racon::Polisher::polish] generating consensus [=======> ] 0.081195 s [racon::Polisher::polish] generating consensus [========> ] 0.089664 s [racon::Polisher::polish] generating consensus [=========> ] 0.099258 s [racon::Polisher::polish] generating consensus [==========> ] 0.114683 s [racon::Polisher::polish] generating consensus [===========> ] 0.133820 s [racon::Polisher::polish] generating consensus [============> ] 0.157665 s [racon::Polisher::polish] generating consensus [=============> ] 0.190807 s [racon::Polisher::polish] generating consensus [==============> ] 0.223966 s [racon::Polisher::polish] generating consensus [===============> ] 0.254637 s [racon::Polisher::polish] generating consensus [================> ] 0.274401 s [racon::Polisher::polish] generating consensus [=================> ] 0.300454 s [racon::Polisher::polish] generating consensus [==================> ] 0.314851 s [racon::Polisher::polish] generating consensus [===================>] 0.328240 s [racon::Polisher::polish] generating consensus [====================] 0.386956 s [racon::Polisher::] total = 0.453115 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (463 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000413 s [racon::Polisher::initialize] loaded sequences 0.012662 s [racon::Polisher::initialize] loaded overlaps 0.016843 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.001908 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002041 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002164 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002218 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002332 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002440 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002480 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002553 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002649 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002706 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002824 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.002919 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003035 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003047 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003168 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003317 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003371 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003519 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003664 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003791 s [racon::Polisher::initialize] transformed data into windows 0.000486 s [racon::Polisher::polish] generating consensus [=> ] 0.018955 s [racon::Polisher::polish] generating consensus [==> ] 0.037666 s [racon::Polisher::polish] generating consensus [===> ] 0.055898 s [racon::Polisher::polish] generating consensus [====> ] 0.070980 s [racon::Polisher::polish] generating consensus [=====> ] 0.079663 s [racon::Polisher::polish] generating consensus [======> ] 0.086823 s [racon::Polisher::polish] generating consensus [=======> ] 0.096985 s [racon::Polisher::polish] generating consensus [========> ] 0.108630 s [racon::Polisher::polish] generating consensus [=========> ] 0.120437 s [racon::Polisher::polish] generating consensus [==========> ] 0.139657 s [racon::Polisher::polish] generating consensus [===========> ] 0.162783 s [racon::Polisher::polish] generating consensus [============> ] 0.191065 s [racon::Polisher::polish] generating consensus [=============> ] 0.234020 s [racon::Polisher::polish] generating consensus [==============> ] 0.266268 s [racon::Polisher::polish] generating consensus [===============> ] 0.297047 s [racon::Polisher::polish] generating consensus [================> ] 0.327309 s [racon::Polisher::polish] generating consensus [=================> ] 0.359417 s [racon::Polisher::polish] generating consensus [==================> ] 0.375192 s [racon::Polisher::polish] generating consensus [===================>] 0.392858 s [racon::Polisher::polish] generating consensus [====================] 0.491546 s [racon::Polisher::] total = 0.532834 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (535 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000443 s [racon::Polisher::initialize] loaded sequences 0.029571 s [racon::Polisher::initialize] loaded overlaps 0.000309 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.017949 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026926 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038664 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.047209 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058123 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067819 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091542 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.103392 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112938 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.121517 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.133261 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.143440 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.154483 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.160116 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.167646 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.183416 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.189051 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.198006 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.210462 s [racon::Polisher::initialize] aligning overlaps [====================] 0.226105 s [racon::Polisher::initialize] transformed data into windows 0.001596 s [racon::Polisher::polish] generating consensus [=> ] 0.074688 s [racon::Polisher::polish] generating consensus [==> ] 0.074917 s [racon::Polisher::polish] generating consensus [===> ] 0.126289 s [racon::Polisher::polish] generating consensus [====> ] 0.126345 s [racon::Polisher::polish] generating consensus [=====> ] 0.153538 s [racon::Polisher::polish] generating consensus [======> ] 0.153575 s [racon::Polisher::polish] generating consensus [=======> ] 0.176431 s [racon::Polisher::polish] generating consensus [========> ] 0.176484 s [racon::Polisher::polish] generating consensus [=========> ] 0.212115 s [racon::Polisher::polish] generating consensus [==========> ] 0.212146 s [racon::Polisher::polish] generating consensus [===========> ] 0.278440 s [racon::Polisher::polish] generating consensus [============> ] 0.278476 s [racon::Polisher::polish] generating consensus [=============> ] 0.425780 s [racon::Polisher::polish] generating consensus [==============> ] 0.425816 s [racon::Polisher::polish] generating consensus [===============> ] 0.501444 s [racon::Polisher::polish] generating consensus [================> ] 0.502161 s [racon::Polisher::polish] generating consensus [=================> ] 0.565910 s [racon::Polisher::polish] generating consensus [==================> ] 0.566452 s [racon::Polisher::polish] generating consensus [===================>] 0.622184 s [racon::Polisher::polish] generating consensus [====================] 0.706809 s [racon::Polisher::] total = 0.975268 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1009 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000419 s [racon::Polisher::initialize] loaded sequences 0.029458 s [racon::Polisher::initialize] loaded overlaps 0.000318 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.017815 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026727 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038825 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.047301 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058103 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091342 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102991 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112514 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120891 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132602 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142743 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153768 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.159343 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.166815 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.187226 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.192925 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.201852 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.214263 s [racon::Polisher::initialize] aligning overlaps [====================] 0.225706 s [racon::Polisher::initialize] transformed data into windows 0.001774 s [racon::Polisher::polish] generating consensus [=> ] 0.017474 s [racon::Polisher::polish] generating consensus [==> ] 0.031817 s [racon::Polisher::polish] generating consensus [===> ] 0.044791 s [racon::Polisher::polish] generating consensus [====> ] 0.056212 s [racon::Polisher::polish] generating consensus [=====> ] 0.063000 s [racon::Polisher::polish] generating consensus [======> ] 0.070629 s [racon::Polisher::polish] generating consensus [=======> ] 0.077906 s [racon::Polisher::polish] generating consensus [========> ] 0.086314 s [racon::Polisher::polish] generating consensus [=========> ] 0.096944 s [racon::Polisher::polish] generating consensus [==========> ] 0.108480 s [racon::Polisher::polish] generating consensus [===========> ] 0.128251 s [racon::Polisher::polish] generating consensus [============> ] 0.152527 s [racon::Polisher::polish] generating consensus [=============> ] 0.184380 s [racon::Polisher::polish] generating consensus [==============> ] 0.216422 s [racon::Polisher::polish] generating consensus [===============> ] 0.239640 s [racon::Polisher::polish] generating consensus [================> ] 0.255711 s [racon::Polisher::polish] generating consensus [=================> ] 0.277300 s [racon::Polisher::polish] generating consensus [==================> ] 0.289300 s [racon::Polisher::polish] generating consensus [===================>] 0.305731 s [racon::Polisher::polish] generating consensus [====================] 0.375895 s [racon::Polisher::] total = 0.643525 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (646 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.029522 s [racon::Polisher::initialize] loaded sequences 0.029698 s [racon::Polisher::initialize] loaded overlaps 0.006926 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.019496 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.034433 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039920 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.049786 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.059025 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.068817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.085737 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.095279 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.110257 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.122526 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.135761 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.156077 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.170332 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.186828 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.197543 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.215149 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.225993 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.228371 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240755 s [racon::Polisher::initialize] aligning overlaps [====================] 0.256214 s [racon::Polisher::initialize] transformed data into windows 0.002820 s [racon::Polisher::polish] generating consensus [=> ] 0.016423 s [racon::Polisher::polish] generating consensus [==> ] 0.033552 s [racon::Polisher::polish] generating consensus [===> ] 0.050582 s [racon::Polisher::polish] generating consensus [====> ] 0.050914 s [racon::Polisher::polish] generating consensus [=====> ] 0.061192 s [racon::Polisher::polish] generating consensus [======> ] 0.067625 s [racon::Polisher::polish] generating consensus [=======> ] 0.077619 s [racon::Polisher::polish] generating consensus [========> ] 0.079163 s [racon::Polisher::polish] generating consensus [=========> ] 0.099104 s [racon::Polisher::polish] generating consensus [==========> ] 0.108601 s [racon::Polisher::polish] generating consensus [===========> ] 0.116907 s [racon::Polisher::polish] generating consensus [============> ] 0.120005 s [racon::Polisher::polish] generating consensus [=============> ] 0.129646 s [racon::Polisher::polish] generating consensus [==============> ] 0.129951 s [racon::Polisher::polish] generating consensus [===============> ] 0.151623 s [racon::Polisher::polish] generating consensus [================> ] 0.152024 s [racon::Polisher::polish] generating consensus [=================> ] 0.190509 s [racon::Polisher::polish] generating consensus [==================> ] 0.204676 s [racon::Polisher::polish] generating consensus [===================>] 0.217681 s [racon::Polisher::polish] generating consensus [====================] 0.220763 s [racon::Polisher::] total = 0.546433 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (548 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.029566 s [racon::Polisher::initialize] loaded sequences 0.029797 s [racon::Polisher::initialize] loaded overlaps 0.006958 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.286421 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.472328 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.648210 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.899661 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.119372 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.272418 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.475263 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.743887 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.990645 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.238305 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.427008 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.695233 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.968112 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.195373 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.507561 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.791885 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.044256 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.317473 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.619189 s [racon::Polisher::initialize] aligning overlaps [====================] 4.858000 s [racon::Polisher::initialize] transformed data into windows 0.044691 s [racon::Polisher::polish] generating consensus [=> ] 0.686640 s [racon::Polisher::polish] generating consensus [==> ] 1.200459 s [racon::Polisher::polish] generating consensus [===> ] 1.743502 s [racon::Polisher::polish] generating consensus [====> ] 2.189954 s [racon::Polisher::polish] generating consensus [=====> ] 2.700025 s [racon::Polisher::polish] generating consensus [======> ] 3.273456 s [racon::Polisher::polish] generating consensus [=======> ] 3.848932 s [racon::Polisher::polish] generating consensus [========> ] 4.271046 s [racon::Polisher::polish] generating consensus [=========> ] 4.820214 s [racon::Polisher::polish] generating consensus [==========> ] 5.457150 s [racon::Polisher::polish] generating consensus [===========> ] 5.996821 s [racon::Polisher::polish] generating consensus [============> ] 6.566800 s [racon::Polisher::polish] generating consensus [=============> ] 7.058239 s [racon::Polisher::polish] generating consensus [==============> ] 7.594192 s [racon::Polisher::polish] generating consensus [===============> ] 8.173677 s [racon::Polisher::polish] generating consensus [================> ] 8.488940 s [racon::Polisher::polish] generating consensus [=================> ] 9.133471 s [racon::Polisher::polish] generating consensus [==================> ] 9.737302 s [racon::Polisher::polish] generating consensus [===================>] 10.318074 s [racon::Polisher::polish] generating consensus [====================] 10.769100 s [racon::Polisher::] total = 15.740949 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (15743 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.012474 s [racon::Polisher::initialize] loaded sequences 0.012614 s [racon::Polisher::initialize] loaded overlaps 0.006618 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.282204 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.466904 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.640739 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.888781 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.104924 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.256163 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.461752 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.744437 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.986436 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.225161 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.415687 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.682722 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.952186 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.184475 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.483605 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.765806 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.014942 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.295278 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.598934 s [racon::Polisher::initialize] aligning overlaps [====================] 4.843486 s [racon::Polisher::initialize] transformed data into windows 0.012037 s [racon::Polisher::polish] generating consensus [=> ] 0.956299 s [racon::Polisher::polish] generating consensus [==> ] 1.699368 s [racon::Polisher::polish] generating consensus [===> ] 2.427047 s [racon::Polisher::polish] generating consensus [====> ] 2.975848 s [racon::Polisher::polish] generating consensus [=====> ] 3.662782 s [racon::Polisher::polish] generating consensus [======> ] 4.412986 s [racon::Polisher::polish] generating consensus [=======> ] 5.203938 s [racon::Polisher::polish] generating consensus [========> ] 5.775383 s [racon::Polisher::polish] generating consensus [=========> ] 6.560912 s [racon::Polisher::polish] generating consensus [==========> ] 7.431776 s [racon::Polisher::polish] generating consensus [===========> ] 8.162112 s [racon::Polisher::polish] generating consensus [============> ] 8.949582 s [racon::Polisher::polish] generating consensus [=============> ] 9.679713 s [racon::Polisher::polish] generating consensus [==============> ] 10.423337 s [racon::Polisher::polish] generating consensus [===============> ] 11.169740 s [racon::Polisher::polish] generating consensus [================> ] 11.569154 s [racon::Polisher::polish] generating consensus [=================> ] 12.526036 s [racon::Polisher::polish] generating consensus [==================> ] 13.412491 s [racon::Polisher::polish] generating consensus [===================>] 14.217364 s [racon::Polisher::polish] generating consensus [====================] 14.705077 s [racon::Polisher::] total = 19.593993 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (19596 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.029349 s [racon::Polisher::initialize] loaded sequences 0.029261 s [racon::Polisher::initialize] loaded overlaps 0.006340 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.282979 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.469522 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.642999 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.892254 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.108744 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.260120 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.465610 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.729555 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.973076 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.216913 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.405795 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.672303 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.941828 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.185315 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.486240 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.767337 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.004380 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.301483 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.607986 s [racon::Polisher::initialize] aligning overlaps [====================] 4.831661 s [racon::Polisher::initialize] transformed data into windows 0.044216 s [racon::Polisher::polish] generating consensus [=> ] 0.682761 s [racon::Polisher::polish] generating consensus [==> ] 1.192428 s [racon::Polisher::polish] generating consensus [===> ] 1.735759 s [racon::Polisher::polish] generating consensus [====> ] 2.182939 s [racon::Polisher::polish] generating consensus [=====> ] 2.681226 s [racon::Polisher::polish] generating consensus [======> ] 3.256907 s [racon::Polisher::polish] generating consensus [=======> ] 3.834081 s [racon::Polisher::polish] generating consensus [========> ] 4.257362 s [racon::Polisher::polish] generating consensus [=========> ] 4.806999 s [racon::Polisher::polish] generating consensus [==========> ] 5.446078 s [racon::Polisher::polish] generating consensus [===========> ] 5.990409 s [racon::Polisher::polish] generating consensus [============> ] 6.566087 s [racon::Polisher::polish] generating consensus [=============> ] 7.063898 s [racon::Polisher::polish] generating consensus [==============> ] 7.605650 s [racon::Polisher::polish] generating consensus [===============> ] 8.189449 s [racon::Polisher::polish] generating consensus [================> ] 8.508066 s [racon::Polisher::polish] generating consensus [=================> ] 9.358852 s [racon::Polisher::polish] generating consensus [==================> ] 10.906656 s [racon::Polisher::polish] generating consensus [===================>] 11.789042 s [racon::Polisher::polish] generating consensus [====================] 12.138283 s [racon::Polisher::] total = 17.081418 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (17092 ms) [----------] 10 tests from RaconPolishingTest (57117 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (57129 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3944353 and its subdirectories I: Current time: Fri Oct 2 19:55:09 +14 2026 I: pbuilder-time-stamp: 1790920509