I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 15 12:19:13 +14 2025 I: pbuilder-time-stamp: 1757888353 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan-needle_1.0.3+ds-1.dsc] I: copying [./seqan-needle_1.0.3+ds.orig.tar.xz] I: copying [./seqan-needle_1.0.3+ds-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.3+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting seqan-needle in seqan-needle-1.0.3+ds dpkg-source: info: unpacking seqan-needle_1.0.3+ds.orig.tar.xz dpkg-source: info: unpacking seqan-needle_1.0.3+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian-seqan3 dpkg-source: info: applying privacy dpkg-source: info: applying create_doc_without_previous_binary_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/D01_modify_environment starting debug: Running on ionos1-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 14 22:19 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=29b25dcce72c4650ada9c8497edc6aee LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3724350 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.zOgWcf94/pbuilderrc_0oRH --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.zOgWcf94/b2 --logfile b2/build.log seqan-needle_1.0.3+ds-1.dsc' SUDO_GID=110 SUDO_HOME=/var/lib/jenkins SUDO_UID=105 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), architecture-is-64-bit, architecture-is-little-endian, cmake, libseqan3-dev (>= 3.2.0+ds-5), libgtest-dev, libcereal-dev, pkgconf, git, doxygen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-little-endian; however: Package architecture-is-little-endian is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan3-dev (>= 3.2.0+ds-5); however: Package libseqan3-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on git; however: Package git is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} gettext{a} gettext-base{a} git{a} git-man{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcereal-dev{a} libclang-cpp19{a} libclang1-19{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdebhelper-perl{a} libedit2{a} libelf1t64{a} liberror-perl{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfmt10{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} libz3-4{a} m4{a} man-db{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales less libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx openssh-client psmisc publicsuffix wget 0 packages upgraded, 83 newly installed, 0 to remove and 0 not upgraded. Need to get 107 MB of archives. After unpacking 472 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main amd64 libexpat1 amd64 2.7.1-2 [108 kB] Get: 2 http://deb.debian.org/debian forky/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get: 3 http://deb.debian.org/debian forky/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get: 4 http://deb.debian.org/debian forky/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get: 5 http://deb.debian.org/debian forky/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get: 6 http://deb.debian.org/debian forky/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get: 7 http://deb.debian.org/debian forky/main amd64 file amd64 1:5.46-5 [43.6 kB] Get: 8 http://deb.debian.org/debian forky/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get: 9 http://deb.debian.org/debian forky/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get: 10 http://deb.debian.org/debian forky/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get: 11 http://deb.debian.org/debian forky/main amd64 bsdextrautils amd64 2.41.1-2 [95.0 kB] Get: 12 http://deb.debian.org/debian forky/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 13 http://deb.debian.org/debian forky/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get: 14 http://deb.debian.org/debian forky/main amd64 architecture-properties amd64 0.2.6 [2336 B] Get: 15 http://deb.debian.org/debian forky/main amd64 m4 amd64 1.4.20-1 [324 kB] Get: 16 http://deb.debian.org/debian forky/main amd64 autoconf all 2.72-3.1 [494 kB] Get: 17 http://deb.debian.org/debian forky/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 18 http://deb.debian.org/debian forky/main amd64 automake all 1:1.17-4 [862 kB] Get: 19 http://deb.debian.org/debian forky/main amd64 autopoint all 0.23.1-2 [770 kB] Get: 20 http://deb.debian.org/debian forky/main amd64 cmake-data all 4.1.1+really3.31.6-1 [2268 kB] Get: 21 http://deb.debian.org/debian forky/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get: 22 http://deb.debian.org/debian forky/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB] Get: 23 http://deb.debian.org/debian forky/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 24 http://deb.debian.org/debian forky/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 25 http://deb.debian.org/debian forky/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB] Get: 26 http://deb.debian.org/debian forky/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 27 http://deb.debian.org/debian forky/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get: 28 http://deb.debian.org/debian forky/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 29 http://deb.debian.org/debian forky/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 30 http://deb.debian.org/debian forky/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 31 http://deb.debian.org/debian forky/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB] Get: 32 http://deb.debian.org/debian forky/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 33 http://deb.debian.org/debian forky/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 34 http://deb.debian.org/debian forky/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get: 35 http://deb.debian.org/debian forky/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB] Get: 36 http://deb.debian.org/debian forky/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 37 http://deb.debian.org/debian forky/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 38 http://deb.debian.org/debian forky/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB] Get: 39 http://deb.debian.org/debian forky/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 40 http://deb.debian.org/debian forky/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 41 http://deb.debian.org/debian forky/main amd64 libgnutls30t64 amd64 3.8.9-3 [1465 kB] Get: 42 http://deb.debian.org/debian forky/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB] Get: 43 http://deb.debian.org/debian forky/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 44 http://deb.debian.org/debian forky/main amd64 libcurl4t64 amd64 8.15.0-1 [392 kB] Get: 45 http://deb.debian.org/debian forky/main amd64 libjsoncpp26 amd64 1.9.6-4 [89.4 kB] Get: 46 http://deb.debian.org/debian forky/main amd64 librhash1 amd64 1.4.6-1 [137 kB] Get: 47 http://deb.debian.org/debian forky/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB] Get: 48 http://deb.debian.org/debian forky/main amd64 cmake amd64 4.1.1+really3.31.6-1 [12.0 MB] Get: 49 http://deb.debian.org/debian forky/main amd64 libdebhelper-perl all 13.26 [91.8 kB] Get: 50 http://deb.debian.org/debian forky/main amd64 libtool all 2.5.4-5 [540 kB] Get: 51 http://deb.debian.org/debian forky/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian forky/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian forky/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 54 http://deb.debian.org/debian forky/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 55 http://deb.debian.org/debian forky/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get: 56 http://deb.debian.org/debian forky/main amd64 dwz amd64 0.16-2 [108 kB] Get: 57 http://deb.debian.org/debian forky/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get: 58 http://deb.debian.org/debian forky/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian forky/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian forky/main amd64 debhelper all 13.26 [939 kB] Get: 61 http://deb.debian.org/debian forky/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB] Get: 62 http://deb.debian.org/debian forky/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB] Get: 63 http://deb.debian.org/debian forky/main amd64 libllvm19 amd64 1:19.1.7-3+b2 [26.0 MB] Get: 64 http://deb.debian.org/debian forky/main amd64 libclang-cpp19 amd64 1:19.1.7-3+b2 [13.2 MB] Get: 65 http://deb.debian.org/debian forky/main amd64 libclang1-19 amd64 1:19.1.7-3+b2 [7620 kB] Get: 66 http://deb.debian.org/debian forky/main amd64 libfmt10 amd64 10.1.1+ds1-4 [127 kB] Get: 67 http://deb.debian.org/debian forky/main amd64 doxygen amd64 1.9.8+ds-2.1 [5017 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 libcurl3t64-gnutls amd64 8.15.0-1 [385 kB] Get: 71 http://deb.debian.org/debian forky/main amd64 liberror-perl all 0.17030-1 [26.9 kB] Get: 72 http://deb.debian.org/debian forky/main amd64 git-man all 1:2.51.0-1 [2286 kB] Get: 73 http://deb.debian.org/debian forky/main amd64 git amd64 1:2.51.0-1 [9259 kB] Get: 74 http://deb.debian.org/debian forky/main amd64 googletest all 1.17.0-1 [522 kB] Get: 75 http://deb.debian.org/debian forky/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get: 76 http://deb.debian.org/debian forky/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.4 [98.1 kB] Get: 77 http://deb.debian.org/debian forky/main amd64 libcereal-dev amd64 1.3.2+dfsg-6 [221 kB] Get: 78 http://deb.debian.org/debian forky/main amd64 libgtest-dev amd64 1.17.0-1 [259 kB] Get: 79 http://deb.debian.org/debian forky/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get: 80 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 81 http://deb.debian.org/debian forky/main amd64 libseqan3-dev all 3.4.0+ds-1 [665 kB] Get: 82 http://deb.debian.org/debian forky/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get: 83 http://deb.debian.org/debian forky/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Fetched 107 MB in 2s (50.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) Preparing to unpack .../00-libexpat1_2.7.1-2_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_amd64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_amd64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../08-libuchardet0_0.0.8-2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_amd64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.1-2_amd64.deb ... Unpacking bsdextrautils (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../11-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_amd64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package architecture-properties:amd64. Preparing to unpack .../13-architecture-properties_0.2.6_amd64.deb ... Unpacking architecture-properties:amd64 (0.2.6) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.20-1_amd64.deb ... Unpacking m4 (1.4.20-1) ... 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Setting up libcurl3t64-gnutls:amd64 (8.15.0-1) ... Setting up debhelper (13.26) ... Setting up git (1:2.51.0-1) ... Setting up cmake (4.1.1+really3.31.6-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/seqan-needle-1.0.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-needle_1.0.3+ds-1_source.changes dpkg-buildpackage: info: source package seqan-needle dpkg-buildpackage: info: source version 1.0.3+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_configure --arch -- -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN3_NO_LEMON=OFF -DCPM_USE_LOCAL_PACKAGES=On .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0 -- Found Git: /usr/bin/git (found version "2.51.0") CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") found components: CXX -- CPM: Using local package GTest@1.17.0 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (7.3s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY SEQAN3_NO_LEMON -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: No configuration needed for the docs I: No configuration needed for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_build --arch -- tests cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" tests VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 tests make[3]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 31 make -f CMakeFiles/Makefile2 test/CMakeFiles/tests.dir/all make[4]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src/CMakeFiles/needle_lib.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f src/CMakeFiles/needle_lib.dir/build.make src/CMakeFiles/needle_lib.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 3%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g 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-Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle_lib.dir/ibf.cpp.o -MF CMakeFiles/needle_lib.dir/ibf.cpp.o.d -o CMakeFiles/needle_lib.dir/ibf.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp [ 9%] Linking CXX static library ../lib/libneedle_lib.a cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/needle_lib.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_lib.dir/link.txt --verbose=1 "/usr/bin/gcc-ar-15" qc ../lib/libneedle_lib.a CMakeFiles/needle_lib.dir/estimate.cpp.o CMakeFiles/needle_lib.dir/ibf.cpp.o "/usr/bin/gcc-ranlib-15" ../lib/libneedle_lib.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 9%] 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src/CMakeFiles/needle.dir/main.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DNEEDLE_DATE=\"2024-11-07\" -DNEEDLE_VERSION=\"1.0.3\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -MD -MT src/CMakeFiles/needle.dir/main.cpp.o -MF CMakeFiles/needle.dir/main.cpp.o.d -o CMakeFiles/needle.dir/main.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp [ 16%] Linking CXX executable ../bin/needle cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle.dir/link.d CMakeFiles/needle.dir/main.cpp.o -o ../bin/needle ../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 16%] Built target needle make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/depend make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/depend make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/depend make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/depend make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/depend cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds 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test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/depend make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/depend make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/depend make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/depend make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibf_test.dir/build.make test/api/CMakeFiles/ibf_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 19%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && 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'/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/ibf_options_test.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api/CMakeFiles/ibfmin_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/minimiser_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/insert_options_test.dir/DependInfo.cmake "--color=" make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli/CMakeFiles/count_options_test.dir/DependInfo.cmake "--color=" make -f test/cli/CMakeFiles/delete_options_test.dir/build.make test/cli/CMakeFiles/delete_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o -MF CMakeFiles/ibf_test.dir/ibf_test.cpp.o.d -o CMakeFiles/ibf_test.dir/ibf_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibf_test.cpp make -f test/api/CMakeFiles/count_test.dir/build.make test/api/CMakeFiles/count_test.dir/build make -f test/api/CMakeFiles/insert_delete_test.dir/build.make test/api/CMakeFiles/insert_delete_test.dir/build make -f test/api/CMakeFiles/estimate_test.dir/build.make test/api/CMakeFiles/estimate_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/estimate_options_test.dir/build.make test/cli/CMakeFiles/estimate_options_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/minimiser_test.dir/build.make test/api/CMakeFiles/minimiser_test.dir/build make -f test/cli/CMakeFiles/insert_options_test.dir/build.make test/cli/CMakeFiles/insert_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/needle_options_test.dir/build.make test/cli/CMakeFiles/needle_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 22%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o make -f test/cli/CMakeFiles/minimiser_options_test.dir/build.make test/cli/CMakeFiles/minimiser_options_test.dir/build make -f test/cli/CMakeFiles/count_options_test.dir/build.make test/cli/CMakeFiles/count_options_test.dir/build make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/api/CMakeFiles/ibfmin_test.dir/build.make test/api/CMakeFiles/ibfmin_test.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 25%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -MF CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o.d -o CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/delete_options_test.cpp make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o -MF CMakeFiles/estimate_test.dir/estimate_test.cpp.o.d -o CMakeFiles/estimate_test.dir/estimate_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/estimate_test.cpp make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/cli/CMakeFiles/ibf_options_test.dir/build.make test/cli/CMakeFiles/ibf_options_test.dir/build [ 29%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o [ 32%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -MF CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o.d -o CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/estimate_options_test.cpp [ 35%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -MF CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o.d -o CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/insert_delete_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/api/CMakeFiles/count_test.dir/count_test.cpp.o -MF CMakeFiles/count_test.dir/count_test.cpp.o.d -o CMakeFiles/count_test.dir/count_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/count_test.cpp [ 38%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o [ 41%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -MF CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o.d -o CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/insert_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -MF CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o.d -o CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/minimiser_options_test.cpp [ 51%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o [ 51%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -MF CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o.d -o CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/minimiser_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -MF CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o.d -o CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/needle_options_test.cpp [ 54%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -MF CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o.d -o CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/api/ibfmin_test.cpp [ 58%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o [ 58%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o -MF CMakeFiles/count_options_test.dir/count_options_test.cpp.o.d -o CMakeFiles/count_options_test.dir/count_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/count_options_test.cpp cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/c++ -DAPPNAME=\"needle\" -DBINDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/output/\" -I/build/reproducible-path/seqan-needle-1.0.3+ds/src/../include -isystem /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/src/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++23 -flto=auto -fno-fat-lto-objects -Werror -pedantic -Wall -Wextra -Wnrvo -fopenmp -DGTEST_HAS_PTHREAD=1 -MD -MT test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -MF CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o.d -o CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -c /build/reproducible-path/seqan-needle-1.0.3+ds/test/cli/ibf_options_test.cpp [ 61%] Linking CXX executable ../../count_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_options_test.dir/link.txt --verbose=1 [ 64%] Linking CXX executable ../../minimiser_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_options_test.dir/link.txt --verbose=1 [ 67%] Linking CXX executable ../../needle_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/needle_options_test.dir/link.txt --verbose=1 [ 70%] Linking CXX executable ../../ibf_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_options_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/needle_options_test.dir/link.d CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o -o ../../needle_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target needle_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_options_test.dir/link.d CMakeFiles/count_options_test.dir/count_options_test.cpp.o -o ../../count_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target count_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_options_test.dir/link.d CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o -o ../../minimiser_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target minimiser_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_options_test.dir/link.d CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o -o ../../ibf_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 70%] Built target ibf_options_test [ 74%] Linking CXX executable ../../count_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/count_test.dir/link.txt --verbose=1 [ 77%] Linking CXX executable ../../insert_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_options_test.dir/link.txt --verbose=1 [ 80%] Linking CXX executable ../../delete_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/delete_options_test.dir/link.txt --verbose=1 [ 83%] Linking CXX executable ../../estimate_options_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_options_test.dir/link.txt --verbose=1 [ 87%] Linking CXX executable ../../estimate_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/estimate_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/count_test.dir/link.d CMakeFiles/count_test.dir/count_test.cpp.o -o ../../count_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 87%] Built target count_test [ 90%] Linking CXX executable ../../minimiser_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/minimiser_test.dir/link.txt --verbose=1 [ 93%] Linking CXX executable ../../ibfmin_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibfmin_test.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../../insert_delete_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/insert_delete_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_options_test.dir/link.d CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o -o ../../insert_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [ 96%] Built target insert_options_test [100%] Linking CXX executable ../../ibf_test cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/ibf_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/delete_options_test.dir/link.d CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o -o ../../delete_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target delete_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_options_test.dir/link.d CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o -o ../../estimate_options_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_options_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/estimate_test.dir/link.d CMakeFiles/estimate_test.dir/estimate_test.cpp.o -o ../../estimate_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target estimate_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/minimiser_test.dir/link.d CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o -o ../../minimiser_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibfmin_test.dir/link.d CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o -o ../../ibfmin_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target minimiser_test [100%] Built target ibfmin_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/insert_delete_test.dir/link.d CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o -o ../../insert_delete_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target insert_delete_test /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-needle-1.0.3+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -flto=auto -fno-fat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/ibf_test.dir/link.d CMakeFiles/ibf_test.dir/ibf_test.cpp.o -o ../../ibf_test ../../lib/libneedle_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/gcc/x86_64-linux-gnu/15/libgomp.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target ibf_test make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/depend make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-needle-1.0.3+ds /build/reproducible-path/seqan-needle-1.0.3+ds/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/CMakeFiles/tests.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make -f test/CMakeFiles/tests.dir/build.make test/CMakeFiles/tests.dir/build make[5]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'test/CMakeFiles/tests.dir/build'. make[5]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' [100%] Built target tests make[4]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' doxygen doc/doxygen_cfg warning: Tag 'HTML_TIMESTAMP' at line 224 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 260 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_TIMESTAMP' at line 295 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 364 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 365 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 393 of file 'doc/doxygen_cfg' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: tag INCLUDE_PATH: include path '${CMAKE_SOURCE_DIR}/include' does not exist warning: source '${CMAKE_SOURCE_DIR}/include' is not a readable file or directory... skipping. Doxygen version used: 1.9.8 Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/include Searching for files in directory /build/reproducible-path/seqan-needle-1.0.3+ds/src Reading and parsing tag files Parsing files Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Preprocessing /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Parsing file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Reading /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating code for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating file documentation... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/estimate.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/ibf.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/include/shared.hpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/LICENSE.md... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/CMakeLists.txt... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/estimate.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/ibf.cpp... Generating docs for file /build/reproducible-path/seqan-needle-1.0.3+ds/src/main.cpp... Generating page documentation... Generating docs for page md__2build_2reproducible-path_2seqan-needle-1_80_83_09ds_2_l_i_c_e_n_s_e... Generating group documentation... Generating class documentation... Generating docs for compound all_arguments... Generating docs for compound estimate_arguments... Generating docs for compound estimate_ibf_arguments... Generating docs for compound min_arguments... Generating docs for compound minimiser_arguments... Generating docs for compound my_traits... Generating docs for compound RandomGenerator... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... type lookup cache used 125/65536 hits=272 misses=132 symbol lookup cache used 135/65536 hits=345 misses=135 finished... make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules execute_after_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' obj-*/bin/needle --export-help man > debian/needle.1 obj-*/bin/needle count --export-help man > debian/needle-count.1 obj-*/bin/needle estimate --export-help man > debian/needle-estimate.1 obj-*/bin/needle ibf --export-help man > debian/needle-ibf.1 obj-*/bin/needle minimiser --export-help man > debian/needle-minimiser.1 make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' debian/rules override_dh_auto_test-indep make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' echo I: Not running tests for the docs I: Not running tests for the docs make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' dh_auto_test -Nseqan-needle-doc cd obj-x86_64-linux-gnu && make -j40 test ARGS\+=--verbose ARGS\+=-j40 make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process --output-on-failure --no-tests=error --verbose -j40 UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl UpdateCTestConfiguration from :/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/DartConfiguration.tcl Test project /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end Connected to MAKE jobserver test 1 Start 1: count_test 1: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_test 1: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 1: Test timeout computed to be: 10000000 test 2 Start 2: insert_delete_test 2: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_delete_test 2: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 2: Test timeout computed to be: 10000000 test 3 Start 3: estimate_test 3: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_test 3: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 3: Test timeout computed to be: 10000000 test 4 Start 4: ibf_test 4: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_test 4: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 4: Test timeout computed to be: 10000000 test 5 Start 5: ibfmin_test 5: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibfmin_test 5: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 5: Test timeout computed to be: 10000000 test 6 Start 6: minimiser_test 6: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_test 6: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/api 6: Test timeout computed to be: 10000000 test 7 Start 7: needle_options_test 7: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/needle_options_test 7: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 7: Test timeout computed to be: 10000000 test 8 Start 8: ibf_options_test 8: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/ibf_options_test 8: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 8: Test timeout computed to be: 10000000 test 9 Start 9: insert_options_test 9: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/insert_options_test 9: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 9: Test timeout computed to be: 10000000 test 10 Start 10: minimiser_options_test 10: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/minimiser_options_test 10: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 10: Test timeout computed to be: 10000000 test 11 Start 11: estimate_options_test 11: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/estimate_options_test 11: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 11: Test timeout computed to be: 10000000 test 12 Start 12: count_options_test 12: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/count_options_test 12: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 12: Test timeout computed to be: 10000000 test 13 Start 13: delete_options_test 13: Test command: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/delete_options_test 13: Working Directory: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/test/cli 13: Test timeout computed to be: 10000000 1: Running main() from ./googletest/src/gtest_main.cc 1: [==========] Running 4 tests from 1 test suite. 1: [----------] Global test environment set-up. 1: [----------] 4 tests from count_test 1: [ RUN ] count_test.small_example 1: [ OK ] count_test.small_example (2 ms) 1: [ RUN ] count_test.small_example_paired 1: [ OK ] count_test.small_example_paired (6 ms) 1: [ RUN ] count_test.small_example_exclude 1: [ OK ] count_test.small_example_exclude (0 ms) 1: [ RUN ] count_test.genome_small_example 1: [ OK ] count_test.genome_small_example (0 ms) 1: [----------] 4 tests from count_test (9 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 4 tests from 1 test suite ran. (10 ms total) 1: [ PASSED ] 4 tests. 2: Running main() from ./googletest/src/gtest_main.cc 2: [==========] Running 9 tests from 2 test suites. 2: [----------] Global test environment set-up. 2: [----------] 1 test from delete_test 2: [ RUN ] delete_test.no_given_thresholds 3: Running main() from ./googletest/src/gtest_main.cc 3: [==========] Running 10 tests from 1 test suite. 3: [----------] Global test environment set-up. 3: [----------] 10 tests from estimate_test 3: [ RUN ] estimate_test.small_example 3: [ OK ] estimate_test.small_example (3 ms) 3: [ RUN ] estimate_test.small_example_uncompressed 3: [ OK ] estimate_test.small_example_uncompressed (5 ms) 3: [ RUN ] estimate_test.small_example_gene_not_found 3: [ OK ] estimate_test.small_example_gene_not_found (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level 3: [ OK ] estimate_test.small_example_different_expressions_per_level (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1 (0 ms) 3: [ RUN ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed 3: [ OK ] estimate_test.small_example_different_expressions_per_level_normalization_1_uncompressed (5 ms) 3: [ RUN ] estimate_test.example 4: Running main() from ./googletest/src/gtest_main.cc 4: [==========] Running 8 tests from 1 test suite. 4: [----------] Global test environment set-up. 4: [----------] 8 tests from ibf_test 4: [ RUN ] ibf_test.given_expression_thresholds 4: [ OK ] ibf_test.given_expression_thresholds (1 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_include_file 4: [ OK ] ibf_test.given_expression_thresholds_include_file (5 ms) 4: [ RUN ] ibf_test.given_expression_thresholds_exclude_file 4: [ OK ] ibf_test.given_expression_thresholds_exclude_file (0 ms) 4: [ RUN ] ibf_test.no_given_expression_thresholds 4: [ OK ] ibf_test.no_given_expression_thresholds (0 ms) 4: [ RUN ] ibf_test.expression_thresholds_by_genome 4: [ OK ] ibf_test.expression_thresholds_by_genome (0 ms) 4: [ RUN ] ibf_test.throws 4: [ OK ] ibf_test.throws (0 ms) 4: [ RUN ] ibf_test.given_cutoffs 4: [ OK ] ibf_test.given_cutoffs (0 ms) 4: [ RUN ] ibf_test.different_file_sizes 5: Running main() from ./googletest/src/gtest_main.cc 5: [==========] Running 6 tests from 1 test suite. 5: [----------] Global test environment set-up. 5: [----------] 6 tests from ibfmin_test 5: [ RUN ] ibfmin_test.given_expression_thresholds 5: [ OK ] ibfmin_test.given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.given_expression_thresholds_multiple_threads (37 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds 5: [ OK ] ibfmin_test.no_given_expression_thresholds (0 ms) 5: [ RUN ] ibfmin_test.expression_thresholds_by_genome 5: [ OK ] ibfmin_test.expression_thresholds_by_genome (1 ms) 5: [ RUN ] ibfmin_test.no_given_expression_thresholds_multiple_threads 5: [ OK ] ibfmin_test.no_given_expression_thresholds_multiple_threads (12 ms) 5: [ RUN ] ibfmin_test.different_shape 6: Running main() from ./googletest/src/gtest_main.cc 6: [==========] Running 8 tests from 1 test suite. 6: [----------] Global test environment set-up. 6: [----------] 8 tests from minimiser_test 6: [ RUN ] minimiser_test.small_example 6: [ OK ] minimiser_test.small_example (7 ms) 6: [ RUN ] minimiser_test.small_example_different_shape 6: [ OK ] minimiser_test.small_example_different_shape (0 ms) 6: [ RUN ] minimiser_test.small_example_samplewise 6: [ OK ] minimiser_test.small_example_samplewise (0 ms) 6: [ RUN ] minimiser_test.cutoff_by_filesize 6: [ OK ] minimiser_test.cutoff_by_filesize (0 ms) 6: [ RUN ] minimiser_test.small_example_two_threads 6: [ OK ] minimiser_test.small_example_two_threads (5 ms) 6: [ RUN ] minimiser_test.small_example_include 6: [ OK ] minimiser_test.small_example_include (0 ms) 6: [ RUN ] minimiser_test.small_example_exclude 6: [ OK ] minimiser_test.small_example_exclude (0 ms) 6: [ RUN ] minimiser_test.small_example_shape 6: [ OK ] minimiser_test.small_example_shape (0 ms) 6: [----------] 8 tests from minimiser_test (16 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 8 tests from 1 test suite ran. (16 ms total) 6: [ PASSED ] 8 tests. 7: Running main() from ./googletest/src/gtest_main.cc 7: [==========] Running 2 tests from 1 test suite. 7: [----------] Global test environment set-up. 7: [----------] 2 tests from needle_options_test 7: [ RUN ] needle_options_test.no_options 7: [ OK ] needle_options_test.no_options (15 ms) 7: [ RUN ] needle_options_test.fail_no_argument 7: [ OK ] needle_options_test.fail_no_argument (15 ms) 7: [----------] 2 tests from needle_options_test (31 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 2 tests from 1 test suite ran. (31 ms total) 7: [ PASSED ] 2 tests. 8: Running main() from ./googletest/src/gtest_main.cc 8: [==========] Running 19 tests from 1 test suite. 8: [----------] Global test environment set-up. 8: [----------] 19 tests from ibf_options_test 8: [ RUN ] ibf_options_test.ibf_no_options 9: Running main() from ./googletest/src/gtest_main.cc 9: [==========] Running 3 tests from 1 test suite. 9: [----------] Global test environment set-up. 9: [----------] 3 tests from insert_options_test 9: [ RUN ] insert_options_test.insert_no_options 9: [ OK ] insert_options_test.insert_no_options (23 ms) 9: [ RUN ] insert_options_test.insert_fail_no_argument 10: Running main() from ./googletest/src/gtest_main.cc 10: [==========] Running 8 tests from 1 test suite. 10: [----------] Global test environment set-up. 10: [----------] 8 tests from minimiser_options_test 10: [ RUN ] minimiser_options_test.no_options 10: [ OK ] minimiser_options_test.no_options (16 ms) 10: [ RUN ] minimiser_options_test.fail_no_argument 11: Running main() from ./googletest/src/gtest_main.cc 11: [==========] Running 5 tests from 1 test suite. 11: [----------] Global test environment set-up. 11: [----------] 5 tests from estimate_options_test 11: [ RUN ] estimate_options_test.no_options 12: Running main() from ./googletest/src/gtest_main.cc 12: [==========] Running 8 tests from 2 test suites. 12: [----------] Global test environment set-up. 12: [----------] 5 tests from count_options_test 12: [ RUN ] count_options_test.no_options 1/13 Test #1: count_test ....................... Passed 0.08 sec 2/13 Test #6: minimiser_test ................... Passed 0.06 sec 3/13 Test #7: needle_options_test .............. Passed 0.06 sec 5: [ OK ] ibfmin_test.different_shape (5 ms) 5: [----------] 6 tests from ibfmin_test (58 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 6 tests from 1 test suite ran. (58 ms total) 5: [ PASSED ] 6 tests. 4/13 Test #5: ibfmin_test ...................... Passed 0.07 sec 12: [ OK ] count_options_test.no_options (15 ms) 12: [ RUN ] count_options_test.fail_no_argument 9: [ OK ] insert_options_test.insert_fail_no_argument (14 ms) 9: [ RUN ] insert_options_test.with_argument 8: [ OK ] ibf_options_test.ibf_no_options (48 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_argument 13: Running main() from ./googletest/src/gtest_main.cc 13: [==========] Running 2 tests from 1 test suite. 13: [----------] Global test environment set-up. 13: [----------] 2 tests from delete_options_test 13: [ RUN ] delete_options_test.delete_no_options 11: [ OK ] estimate_options_test.no_options (17 ms) 11: [ RUN ] estimate_options_test.fail_no_argument 10: [ OK ] minimiser_options_test.fail_no_argument (12 ms) 10: [ RUN ] minimiser_options_test.with_arguments 11: [ OK ] estimate_options_test.fail_no_argument (10 ms) 11: [ RUN ] estimate_options_test.with_argument 13: [ OK ] delete_options_test.delete_no_options (11 ms) 13: [ RUN ] delete_options_test.with_argument 12: [ OK ] count_options_test.fail_no_argument (17 ms) 12: [ RUN ] count_options_test.with_arguments 8: [ OK ] ibf_options_test.ibf_fail_no_argument (14 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction 10: [ OK ] minimiser_options_test.with_arguments (21 ms) 10: [ RUN ] minimiser_options_test.cutoff 8: [ OK ] ibf_options_test.ibf_fail_contradiction (17 ms) 8: [ RUN ] ibf_options_test.ibf_fail_contradiction2 12: [ OK ] count_options_test.with_arguments (21 ms) 12: [ RUN ] count_options_test.multithreads 10: [ OK ] minimiser_options_test.cutoff (19 ms) 10: [ RUN ] minimiser_options_test.multiple_sample 12: [ OK ] count_options_test.multithreads (13 ms) 12: [ RUN ] count_options_test.paired 8: [ OK ] ibf_options_test.ibf_fail_contradiction2 (19 ms) 8: [ RUN ] ibf_options_test.ibf_fail_no_fpr 8: [ OK ] ibf_options_test.ibf_fail_no_fpr (11 ms) 8: [ RUN ] ibf_options_test.ibf_fail_incorrect_number_of_fprs 10: [ OK ] minimiser_options_test.multiple_sample (18 ms) 10: [ RUN ] minimiser_options_test.multithreads 12: [ OK ] count_options_test.paired (23 ms) 12: [----------] 5 tests from count_options_test (91 ms total) 12: 12: [----------] 3 tests from genome_options_test 12: [ RUN ] genome_options_test.no_options 8: [ OK ] ibf_options_test.ibf_fail_incorrect_number_of_fprs (18 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument 12: [ OK ] genome_options_test.no_options (17 ms) 12: [ RUN ] genome_options_test.fail_no_argument 12: [ OK ] genome_options_test.fail_no_argument (15 ms) 12: [ RUN ] genome_options_test.with_arguments 12: [ OK ] genome_options_test.with_arguments (17 ms) 12: [----------] 3 tests from genome_options_test (50 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 8 tests from 2 test suites ran. (142 ms total) 12: [ PASSED ] 8 tests. 5/13 Test #12: count_options_test ............... Passed 0.15 sec 2: [ OK ] delete_test.no_given_thresholds (355 ms) 2: [----------] 1 test from delete_test (355 ms total) 2: 2: [----------] 8 tests from insert_test 2: [ RUN ] insert_test.ibf 10: [ OK ] minimiser_options_test.multithreads (427 ms) 10: [ RUN ] minimiser_options_test.paired 2: [ OK ] insert_test.ibf (332 ms) 2: [ RUN ] insert_test.ibf_no_given_thresholds 10: [ OK ] minimiser_options_test.paired (122 ms) 10: [ RUN ] minimiser_options_test.invalid_argument 10: [ OK ] minimiser_options_test.invalid_argument (248 ms) 10: [----------] 8 tests from minimiser_options_test (890 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 8 tests from 1 test suite ran. (890 ms total) 10: [ PASSED ] 8 tests. 6/13 Test #10: minimiser_options_test ........... Passed 0.90 sec 2: [ OK ] insert_test.ibf_no_given_thresholds (429 ms) 2: [ RUN ] insert_test.ibf_delete 2: [ OK ] insert_test.ibf_delete (708 ms) 2: [ RUN ] insert_test.ibf_delete_no_given_threshold 2: [ OK ] insert_test.ibf_delete_no_given_threshold (2270 ms) 2: [ RUN ] insert_test.ibfmin 2: [ OK ] insert_test.ibfmin (587 ms) 2: [ RUN ] insert_test.ibfmin_delete 2: [ OK ] insert_test.ibfmin_delete (147 ms) 2: [ RUN ] insert_test.ibfmin_no_given_thresholds 4: [ OK ] ibf_test.different_file_sizes (4840 ms) 4: [----------] 8 tests from ibf_test (4855 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 8 tests from 1 test suite ran. (4855 ms total) 4: [ PASSED ] 8 tests. 7/13 Test #4: ibf_test ......................... Passed 4.87 sec 2: [ OK ] insert_test.ibfmin_no_given_thresholds (370 ms) 2: [ RUN ] insert_test.delete_ibfmin_no_given_thresholds 2: [ OK ] insert_test.delete_ibfmin_no_given_thresholds (747 ms) 2: [----------] 8 tests from insert_test (5594 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 9 tests from 2 test suites ran. (5950 ms total) 2: [ PASSED ] 9 tests. 8/13 Test #2: insert_delete_test ............... Passed 5.96 sec 8: [ OK ] ibf_options_test.ibf_with_argument (50170 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_options 3: [ OK ] estimate_test.example (171085 ms) 3: [ RUN ] estimate_test.example_multiple_threads 9: [ OK ] insert_options_test.with_argument (188465 ms) 9: [----------] 3 tests from insert_options_test (188504 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 3 tests from 1 test suite ran. (188504 ms total) 9: [ PASSED ] 3 tests. 9/13 Test #9: insert_options_test .............. Passed 188.51 sec 11: [ OK ] estimate_options_test.with_argument (228092 ms) 11: [ RUN ] estimate_options_test.with_argument_normalization_method 3: [ OK ] estimate_test.example_multiple_threads (84326 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level 3: [ OK ] estimate_test.example_different_expressions_per_level (2236 ms) 3: [ RUN ] estimate_test.example_different_expressions_per_level_multiple_threads 3: [ OK ] estimate_test.example_different_expressions_per_level_multiple_threads (4198 ms) 3: [----------] 10 tests from estimate_test (261864 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 10 tests from 1 test suite ran. (261864 ms total) 3: [ PASSED ] 10 tests. 10/13 Test #3: estimate_test .................... Passed 261.88 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_options (220677 ms) 8: [ RUN ] ibf_options_test.ibf_with_argument_with_userdefined_shape 11: [ OK ] estimate_options_test.with_argument_normalization_method (77387 ms) 11: [ RUN ] estimate_options_test.with_argument_out 13: [ OK ] delete_options_test.with_argument (306505 ms) 13: [----------] 2 tests from delete_options_test (306516 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 2 tests from 1 test suite ran. (306516 ms total) 13: [ PASSED ] 2 tests. 11/13 Test #13: delete_options_test .............. Passed 306.53 sec 8: [ OK ] ibf_options_test.ibf_with_argument_with_userdefined_shape (44003 ms) 8: [ RUN ] ibf_options_test.ibfmin_no_options 8: [ OK ] ibf_options_test.ibfmin_no_options (6 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_argument 8: [ OK ] ibf_options_test.ibfmin_fail_no_argument (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_contradiction2 8: [ OK ] ibf_options_test.ibfmin_fail_contradiction2 (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_no_fpr 8: [ OK ] ibf_options_test.ibfmin_fail_no_fpr (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs 8: [ OK ] ibf_options_test.ibfmin_fail_incorrect_number_of_fprs (7 ms) 8: [ RUN ] ibf_options_test.ibfmin_with_argument 8: [ OK ] ibf_options_test.ibfmin_with_argument (7 ms) 8: [ RUN ] ibf_options_test.compressed 8: [ OK ] ibf_options_test.compressed (7 ms) 8: [ RUN ] ibf_options_test.more_hash_functions 8: [ OK ] ibf_options_test.more_hash_functions (7 ms) 8: [ RUN ] ibf_options_test.expression_thresholds 8: [ OK ] ibf_options_test.expression_thresholds (11 ms) 8: [----------] 19 tests from ibf_options_test (315065 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 19 tests from 1 test suite ran. (315066 ms total) 8: [ PASSED ] 19 tests. 12/13 Test #8: ibf_options_test ................. Passed 315.08 sec 11: [ OK ] estimate_options_test.with_argument_out (19590 ms) 11: [----------] 5 tests from estimate_options_test (325099 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 5 tests from 1 test suite ran. (325099 ms total) 11: [ PASSED ] 5 tests. 13/13 Test #11: estimate_options_test ............ Passed 325.11 sec 100% tests passed, 0 tests failed out of 13 Total Test time (real) = 325.18 sec make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds' rm -Rf obj-*/test make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/seqan-needle-1.0.3\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -P /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu/CMakeFiles/VerifyGlobs.cmake /usr/bin/cmake -S/build/reproducible-path/seqan-needle-1.0.3+ds -B/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 -- CPM: Adding package use_ccache@0 (d2a54ef555b6fc2d496a4c9506dbeb7cf899ce37 to /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d) CMake Warning at /usr/share/cmake-3.31/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency use_ccache to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/use_ccache/7aab611fa016d10516c0081eb38725f4e188f61d Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/share/cmake-3.31/Modules/FetchContent.cmake:2384 (__FetchContent_Populate) vendor/cpm/CPM_0.40.2.cmake:1114 (FetchContent_MakeAvailable) vendor/cpm/CPM_0.40.2.cmake:895 (cpm_fetch_package) vendor/cpm/CPM_0.40.2.cmake:711 (CPMAddPackage) vendor/cpm/CPM_0.40.2.cmake:920 (CPMAddPackage) CMakeLists.txt:61 (CPMGetPackage) -- CPM: Using local package seqan3@3.4.0 CMake Deprecation Warning at vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CPM: Adding package robin-hood@0 (7697343363af4cc3f42cab17be49e6af9ab181e2 at /build/reproducible-path/seqan-needle-1.0.3+ds/vendor/robin-hood/1c87b2a63d3c9a4c89a4da9d2468db0e82ddd789) -- CPM: Using local package GTest@1.17.0 -- You can run `make tests` to build tests. -- You can run `make test` to run tests. -- You can run `make check` to build and run tests. -- Configuring done (2.8s) -- Generating done (0.3s) -- Build files have been written to: /build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/seqan-needle-1.0.3+ds/debian/tmp/usr/bin/needle make[1]: Leaving directory '/build/reproducible-path/seqan-needle-1.0.3+ds/obj-x86_64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'seqan-needle' in '../seqan-needle_1.0.3+ds-1_amd64.deb'. dpkg-deb: building package 'seqan-needle-doc' in '../seqan-needle-doc_1.0.3+ds-1_all.deb'. dpkg-deb: building package 'seqan-needle-dbgsym' in '../seqan-needle-dbgsym_1.0.3+ds-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-needle_1.0.3+ds-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3724350/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3724350 and its subdirectories I: Current time: Mon Sep 15 12:30:43 +14 2025 I: pbuilder-time-stamp: 1757889043