I: pbuilder: network access will be disabled during build I: Current time: Wed Oct 21 09:22:02 -12 2026 I: pbuilder-time-stamp: 1792617722 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [augur_24.4.0-3.dsc] I: copying [./augur_24.4.0.orig.tar.gz] I: copying [./augur_24.4.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./augur_24.4.0-3.dsc: no acceptable signature found dpkg-source: info: extracting augur in augur-24.4.0 dpkg-source: info: unpacking augur_24.4.0.orig.tar.gz dpkg-source: info: unpacking augur_24.4.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying missing-imports.patch dpkg-source: info: applying pandas-2.2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3136133/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='fe113c4448ec456eac2f0a2945f5788a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3136133' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A2FZEiWQ/pbuilderrc_Ki58 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A2FZEiWQ/b1 --logfile b1/build.log augur_24.4.0-3.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3136133/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, mafft, python3-all, python3-setuptools, python3-pytest, python3-pytest-mock, python3-biopython, python3-jsonschema, python3-networkx, python3-packaging, python3-pandas, python3-pyfastx, python3-treetime (>= 0.9.4), python3-typeshed, python3-freezegun, python3-isodate, python3-zstandard, vcftools, python3-xopen (>= 1.7.0-1~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-networkx; however: Package python3-networkx is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-pyfastx; however: Package python3-pyfastx is not installed. pbuilder-satisfydepends-dummy depends on python3-treetime (>= 0.9.4); however: Package python3-treetime is not installed. pbuilder-satisfydepends-dummy depends on python3-typeshed; however: Package python3-typeshed is not installed. pbuilder-satisfydepends-dummy depends on python3-freezegun; however: Package python3-freezegun is not installed. pbuilder-satisfydepends-dummy depends on python3-isodate; however: Package python3-isodate is not installed. pbuilder-satisfydepends-dummy depends on python3-zstandard; however: Package python3-zstandard is not installed. pbuilder-satisfydepends-dummy depends on vcftools; however: Package vcftools is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen (>= 1.7.0-1~); however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} fonts-urw-base35{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libabsl20240722{a} libaom3{a} libarchive-zip-perl{a} libavif16{a} libblas3{a} libbrotli1{a} libcairo2{a} libdav1d7{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontenc1{a} libfreetype6{a} libfribidi0{a} libgav1-1{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libharfbuzz0b{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libopenjp2-7{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} librav1e0.7{a} libreadline8t64{a} libsharpyuv0{a} libsvtav1enc2{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2-16{a} libxrender1{a} libxslt1.1{a} libxss1{a} libyuv0{a} libzopfli1{a} m4{a} mafft{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-biopython{a} python3-brotli{a} python3-cairo{a} python3-charset-normalizer{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-freetype{a} python3-freezegun{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-isodate{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jsonschema{a} python3-jsonschema-specifications{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-networkx{a} python3-numpy{a} python3-numpy-dev{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pyfaidx{a} python3-pyfastx{a} python3-pygments{a} python3-pyparsing{a} python3-pytest{a} python3-pytest-mock{a} python3-pytz{a} python3-referencing{a} python3-reportlab{a} python3-rlpycairo{a} python3-rpds-py{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-treetime{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3-zopfli{a} python3-zstandard{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} sgml-base{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} vcftools{a} w3c-sgml-lib{a} x11-common{a} xfonts-encodings{a} xfonts-utils{a} xml-core{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl fonts-dejavu-extra isympy-common libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl libwww-perl lynx ncbi-blast+ python-biopython-doc python3-bottleneck python3-bs4 python3-cssselect python3-fqdn python3-gdal python3-html5lib python3-idna python3-isal python3-isoduration python3-jinja2 python3-json-pointer python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pooch python3-pydot python3-pygraphviz python3-rfc3339-validator python3-rfc3986-validator python3-rfc3987 python3-tables python3-tz python3-uritemplate python3-webcolors python3-yaml ruby shared-mime-info tabix wget xdg-user-dirs 0 packages upgraded, 180 newly installed, 0 to remove and 0 not upgraded. Need to get 144 MB of archives. After unpacking 609 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 python3-numpy-dev arm64 1:2.2.4+ds-1.2 [138 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libblas3 arm64 3.12.1-7 [135 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libgfortran5 arm64 15.2.0-4 [371 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 python3-numpy arm64 1:2.2.4+ds-1.2 [3620 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libtcl8.6 arm64 8.6.17+dfsg-1 [982 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libpng16-16t64 arm64 1.6.50-1 [275 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libfontenc1 arm64 1:1.1.8-1+b2 [22.5 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 x11-common all 1:7.7+25 [217 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 xfonts-encodings all 1:1.0.4-2.2 [577 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 xfonts-utils arm64 1:7.7+7 [89.3 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 fonts-urw-base35 all 20200910-8 [10.8 MB] Get: 47 http://deb.debian.org/debian forky/main arm64 fontconfig-config arm64 2.15.0-2.4 [318 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libfontconfig1 arm64 2.15.0-2.4 [387 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libxrender1 arm64 1:0.9.12-1 [27.0 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libxft2 arm64 2.3.6-1+b4 [51.6 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libxss1 arm64 1:1.2.3-1+b3 [17.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 libtk8.6 arm64 8.6.17-1 [740 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [537 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 blt arm64 2.5.3+dfsg-8 [5984 B] Get: 61 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 67 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 fonts-lyx all 2.4.4-1 [190 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libabsl20240722 arm64 20240722.0-4 [452 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libaom3 arm64 3.12.1-1 [1670 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libdav1d7 arm64 1.5.1-1 [252 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libgav1-1 arm64 0.19.0-3+b1 [491 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 librav1e0.7 arm64 0.7.1-9+b2 [662 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 libsvtav1enc2 arm64 2.3.0+dfsg-1 [1558 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 libjpeg62-turbo arm64 1:2.1.5-4 [173 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libyuv0 arm64 0.0.1916.20250814-1 [137 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libavif16 arm64 1.3.0-1 [127 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libcairo2 arm64 1.18.4-1+b1 [483 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libfribidi0 arm64 1.0.16-1 [26.5 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 libgpg-error0 arm64 1.55-2 [83.9 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libgcrypt20 arm64 1.11.2-2 [772 kB] Get: 94 http://deb.debian.org/debian forky/main arm64 libglib2.0-0t64 arm64 2.84.4-3 [1428 kB] Get: 95 http://deb.debian.org/debian forky/main arm64 libgraphite2-3 arm64 1.3.14-3 [70.3 kB] Get: 96 http://deb.debian.org/debian forky/main arm64 libharfbuzz0b arm64 11.4.5-1 [465 kB] Get: 97 http://deb.debian.org/debian forky/main arm64 libimagequant0 arm64 4.4.0-3 [216 kB] Get: 98 http://deb.debian.org/debian forky/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 99 http://deb.debian.org/debian forky/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 100 http://deb.debian.org/debian forky/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 101 http://deb.debian.org/debian forky/main arm64 libopenjp2-7 arm64 2.5.3-2.1 [189 kB] Get: 102 http://deb.debian.org/debian forky/main arm64 libqhull-r8.0 arm64 2020.2-7 [229 kB] Get: 103 http://deb.debian.org/debian forky/main arm64 libraqm0 arm64 0.10.3-1 [13.6 kB] Get: 104 http://deb.debian.org/debian forky/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [114 kB] Get: 105 http://deb.debian.org/debian forky/main arm64 libwebp7 arm64 1.5.0-0.1 [271 kB] Get: 106 http://deb.debian.org/debian forky/main arm64 libtiff6 arm64 4.7.0-5 [331 kB] Get: 107 http://deb.debian.org/debian forky/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [113 kB] Get: 108 http://deb.debian.org/debian forky/main arm64 libwebpmux3 arm64 1.5.0-0.1 [125 kB] Get: 109 http://deb.debian.org/debian forky/main arm64 libxslt1.1 arm64 1.1.43-0.2 [145 kB] Get: 110 http://deb.debian.org/debian forky/main arm64 libzopfli1 arm64 1.0.3-3 [95.2 kB] Get: 111 http://deb.debian.org/debian forky/main arm64 mafft arm64 7.525-1 [981 kB] Get: 112 http://deb.debian.org/debian forky/main arm64 python-matplotlib-data all 3.10.1+dfsg1-5 [2737 kB] Get: 113 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 114 http://deb.debian.org/debian forky/main arm64 python3-attr all 25.3.0-1 [69.5 kB] Get: 115 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 116 http://deb.debian.org/debian forky/main arm64 python3-charset-normalizer arm64 3.4.3-1 [123 kB] Get: 117 http://deb.debian.org/debian forky/main arm64 python3.13-tk arm64 3.13.7-1 [105 kB] Get: 118 http://deb.debian.org/debian forky/main arm64 python3-tk arm64 3.13.5-1 [9604 B] Get: 119 http://deb.debian.org/debian forky/main arm64 python3-pil.imagetk arm64 11.3.0-1 [81.3 kB] Get: 120 http://deb.debian.org/debian forky/main arm64 python3-pil arm64 11.3.0-1 [507 kB] Get: 121 http://deb.debian.org/debian forky/main arm64 python3-cairo arm64 1.27.0-2 [114 kB] Get: 122 http://deb.debian.org/debian forky/main arm64 python3-freetype all 2.5.1-2 [89.4 kB] Get: 123 http://deb.debian.org/debian forky/main arm64 python3-rlpycairo all 0.3.0-3 [9904 B] Get: 124 http://deb.debian.org/debian forky/main arm64 python3-reportlab all 4.4.3-1 [1168 kB] Get: 125 http://deb.debian.org/debian forky/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get: 126 http://deb.debian.org/debian forky/main arm64 xml-core all 0.19 [20.1 kB] Get: 127 http://deb.debian.org/debian forky/main arm64 w3c-sgml-lib all 1.3-3 [273 kB] Get: 128 http://deb.debian.org/debian forky/main arm64 python3-biopython arm64 1.85+dfsg-5 [1660 kB] Get: 129 http://deb.debian.org/debian forky/main arm64 python3-brotli arm64 1.1.0-2+b7 [300 kB] Get: 130 http://deb.debian.org/debian forky/main arm64 python3-contourpy arm64 1.3.1-2 [191 kB] Get: 131 http://deb.debian.org/debian forky/main arm64 python3-cycler all 0.12.1-2 [9616 B] Get: 132 http://deb.debian.org/debian forky/main arm64 python3-dateutil all 2.9.0-4 [79.4 kB] Get: 133 http://deb.debian.org/debian forky/main arm64 python3-decorator all 5.2.1-2 [33.0 kB] Get: 134 http://deb.debian.org/debian forky/main arm64 python3-platformdirs all 4.4.0-1 [16.7 kB] Get: 135 http://deb.debian.org/debian forky/main arm64 python3-fs all 2.4.16-8 [95.2 kB] Get: 136 http://deb.debian.org/debian forky/main arm64 python3-lxml arm64 6.0.1-1 [1265 kB] Get: 137 http://deb.debian.org/debian forky/main arm64 python3-lz4 arm64 4.4.4+dfsg-1 [25.5 kB] Get: 138 http://deb.debian.org/debian forky/main arm64 python3-scipy arm64 1.15.3-1.1 [15.1 MB] Get: 139 http://deb.debian.org/debian forky/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 140 http://deb.debian.org/debian forky/main arm64 python3-sympy all 1.14.0-2 [4228 kB] Get: 141 http://deb.debian.org/debian forky/main arm64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB] Get: 142 http://deb.debian.org/debian forky/main arm64 python3-zopfli arm64 0.2.3.post1-1 [10.2 kB] Get: 143 http://deb.debian.org/debian forky/main arm64 unicode-data all 16.0.0-1 [9197 kB] Get: 144 http://deb.debian.org/debian forky/main arm64 python3-fonttools arm64 4.57.0-2 [1368 kB] Get: 145 http://deb.debian.org/debian forky/main arm64 python3-freezegun all 1.5.1-1.2 [17.2 kB] Get: 146 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 147 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 148 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 149 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 150 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 151 http://deb.debian.org/debian forky/main arm64 python3-isodate all 0.7.2-1 [19.5 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 154 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 155 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 156 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 157 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 158 http://deb.debian.org/debian forky/main arm64 python3-rpds-py arm64 0.21.0-2+b1 [226 kB] Get: 159 http://deb.debian.org/debian forky/main arm64 python3-referencing all 0.36.2-1 [23.7 kB] Get: 160 http://deb.debian.org/debian forky/main arm64 python3-jsonschema-specifications all 2023.12.1-2 [9020 B] Get: 161 http://deb.debian.org/debian forky/main arm64 python3-jsonschema all 4.19.2-6 [71.4 kB] Get: 162 http://deb.debian.org/debian forky/main arm64 python3-kiwisolver arm64 1.4.7-3+b1 [57.8 kB] Get: 163 http://deb.debian.org/debian forky/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 164 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 165 http://deb.debian.org/debian forky/main arm64 python3-matplotlib arm64 3.10.1+dfsg1-5 [23.7 MB] Get: 166 http://deb.debian.org/debian forky/main arm64 python3-networkx all 3.2.1-5 [13.0 MB] Get: 167 http://deb.debian.org/debian forky/main arm64 python3-pytz all 2025.2-3 [152 kB] Get: 168 http://deb.debian.org/debian forky/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-9 [3877 kB] Get: 169 http://deb.debian.org/debian forky/main arm64 python3-pandas all 2.2.3+dfsg-9 [3097 kB] Get: 170 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 171 http://deb.debian.org/debian forky/main arm64 python3-pyfaidx all 0.8.1.3-2 [29.1 kB] Get: 172 http://deb.debian.org/debian forky/main arm64 python3-pyfastx arm64 2.2.0-1+b1 [55.2 kB] Get: 173 http://deb.debian.org/debian forky/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get: 174 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.4.2-1 [266 kB] Get: 175 http://deb.debian.org/debian forky/main arm64 python3-pytest-mock all 3.15.0-1 [18.6 kB] Get: 176 http://deb.debian.org/debian forky/main arm64 python3-treetime all 0.11.4-1 [938 kB] Get: 177 http://deb.debian.org/debian forky/main arm64 python3-typeshed all 0.0~git20241223.ea91db2-4 [1531 kB] Get: 178 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 179 http://deb.debian.org/debian forky/main arm64 python3-zstandard arm64 0.24.0-1 [310 kB] Get: 180 http://deb.debian.org/debian forky/main arm64 vcftools arm64 0.1.17-1 [409 kB] Fetched 144 MB in 2s (67.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20364 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21379 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package python3-numpy-dev:arm64. Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1.2_arm64.deb ... Unpacking python3-numpy-dev:arm64 (1:2.2.4+ds-1.2) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../002-libblas3_3.12.1-7_arm64.deb ... Unpacking libblas3:arm64 (3.12.1-7) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../003-libgfortran5_15.2.0-4_arm64.deb ... Unpacking libgfortran5:arm64 (15.2.0-4) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../004-liblapack3_3.12.1-7_arm64.deb ... Unpacking liblapack3:arm64 (3.12.1-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1.2_arm64.deb ... Unpacking python3-numpy (1:2.2.4+ds-1.2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../008-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../011-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.41.1-3_arm64.deb ... Unpacking bsdextrautils (2.41.1-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../014-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.20-1_arm64.deb ... Unpacking m4 (1.4.20-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../021-libtcl8.6_8.6.17+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.17+dfsg-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../022-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../023-libpng16-16t64_1.6.50-1_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.50-1) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../024-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../025-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../026-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package libfontenc1:arm64. Preparing to unpack .../027-libfontenc1_1%3a1.1.8-1+b2_arm64.deb ... Unpacking libfontenc1:arm64 (1:1.1.8-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../028-x11-common_1%3a7.7+25_all.deb ... Unpacking x11-common (1:7.7+25) ... Selecting previously unselected package xfonts-encodings. Preparing to unpack .../029-xfonts-encodings_1%3a1.0.4-2.2_all.deb ... Unpacking xfonts-encodings (1:1.0.4-2.2) ... Selecting previously unselected package xfonts-utils. Preparing to unpack .../030-xfonts-utils_1%3a7.7+7_arm64.deb ... Unpacking xfonts-utils (1:7.7+7) ... Selecting previously unselected package fonts-urw-base35. 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Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-3) ... Setting up liblcms2-2:arm64 (2.16-2) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up vcftools (0.1.17-1) ... Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... Setting up libaom3:arm64 (3.12.1-1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libgpg-error0:arm64 (1.55-2) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up mafft (7.525-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up fonts-lyx (2.4.4-1) ... Setting up libdebhelper-perl (13.26) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... 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Setting up libblas3:arm64 (3.12.1-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.1.5-4) ... Setting up libzopfli1 (1.0.3-3) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libsvtav1enc2:arm64 (2.3.0+dfsg-1) ... Setting up xfonts-encodings (1:1.0.4-2.2) ... Setting up libfribidi0:arm64 (1.0.16-1) ... Setting up libimagequant0:arm64 (4.4.0-3) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.50-1) ... Setting up python3-numpy-dev:arm64 (1:2.2.4+ds-1.2) ... Setting up libtcl8.6:arm64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libgav1-1:arm64 (0.19.0-3+b1) ... Setting up libgfortran5:arm64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... 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Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libxft2:arm64 (2.3.6-1+b4) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.17-1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-freetype (2.5.1-2) ... Setting up xfonts-utils (1:7.7+7) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:arm64 (1.18.4-1+b1) ... Setting up python3.13-tk (3.13.7-1) ... Setting up python3-platformdirs (4.4.0-1) ... Setting up python3-zopfli (0.2.3.post1-1) ... Setting up python3-fs (2.4.16-8) ... Setting up python3-isodate (0.7.2-1) ... Setting up python3-decorator (5.2.1-2) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up python3-xopen (1.7.0-3) ... Setting up python3-zstandard (0.24.0-1) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-typeshed (0.0~git20241223.ea91db2-4) ... Setting up python3-brotli (1.1.0-2+b7) ... Setting up libraqm0:arm64 (0.10.3-1) ... Setting up python3-cycler (0.12.1-2) ... Setting up python3-kiwisolver (1.4.7-3+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-numpy (1:2.2.4+ds-1.2) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-rpds-py (0.21.0-2+b1) ... Setting up python3-lxml:arm64 (6.0.1-1) ... Setting up python3-dateutil (2.9.0-4) ... Setting up python3-contourpy (1.3.1-2) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-freezegun (1.5.1-1.2) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-pyfaidx (0.8.1.3-2) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.14.0-2) ... Setting up python3-attr (25.3.0-1) ... 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Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-reportlab (4.4.3-1) ... Setting up python3-pytest-mock (3.15.0-1) ... Setting up python3-referencing (0.36.2-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-networkx (3.2.1-5) ... Setting up python3-jsonschema-specifications (2023.12.1-2) ... Setting up python3-jsonschema (4.19.2-6) ... Setting up python3-fonttools (4.57.0-2) ... Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... Setting up python3-matplotlib (3.10.1+dfsg1-5) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.85+dfsg-5) ... Setting up python3-treetime (0.11.4-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/augur-24.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../augur_24.4.0-3_source.changes dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 24.4.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache nextstrain_augur.egg-info make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/parse.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/version.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/validate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/utils.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/types.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/tree.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/translate.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titers.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/refine.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/mask.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/lbi.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/index.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/filenames.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/distance.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/clades.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/align.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__version__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__main__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur copying augur/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support copying augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements copying augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/print.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/json.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/file.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io copying augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ copying augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_ creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter copying augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates copying augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data creating /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate copying augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data copying augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data debian/rules execute_before_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' cp -v mypy.ini /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : 'mypy.ini' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' cp -v .flake8 /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build && : '.flake8' -> '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build; python3.13 -m pytest -k 'not (test_mypy or test_flake8)' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.4.2, pluggy-1.6.0 rootdir: /build/reproducible-path/augur-24.4.0 plugins: mock-3.15.0, typeguard-4.4.4 collected 351 items / 2 deselected / 349 selected tests/dates/test_ambiguous_date.py ............................. [ 8%] tests/dates/test_dates.py ....... [ 10%] tests/filter/test_relative_dates.py ................ [ 14%] tests/filter/test_subsample.py ................ [ 19%] tests/io/test_file.py ............. [ 23%] tests/io/test_metadata.py .......................................... [ 35%] tests/io/test_sequences.py .................... [ 40%] tests/io/test_shell_command_runner.py .......... [ 43%] tests/io/test_strains.py . [ 44%] tests/io/test_vcf.py ....... [ 46%] tests/test_align.py ............................................... [ 59%] tests/test_ancestral.py ... [ 60%] tests/test_clades.py ......... [ 63%] tests/test_frequencies.py ........................ [ 69%] tests/test_mask.py ....................................... [ 81%] tests/test_parse.py ... [ 81%] tests/test_schemas.py .......... [ 84%] tests/test_titer_models.py . [ 85%] tests/test_translate.py .. [ 85%] tests/test_utils.py .......... [ 88%] tests/test_validate.py ................... [ 93%] tests/test_validate_export.py .. [ 94%] tests/util_support/test_color_parser.py .... [ 95%] tests/util_support/test_node_data.py ... [ 96%] tests/util_support/test_node_data_file.py ...... [ 98%] tests/util_support/test_node_data_reader.py ...... [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.13/build/tests/test_validate.py: 10 warnings .pybuild/cpython3_3.13/build/tests/util_support/test_node_data_file.py: 2 warnings /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py:65: DeprecationWarning: Accessing Draft6Validator.resolver is deprecated as of v4.18.0, in favor of the https://github.com/python-jsonschema/referencing library, which provides more compliant referencing behavior as well as more flexible APIs for customization. schema_validator.resolver.resolve_remote = resolve_remote -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html =============== 349 passed, 2 deselected, 12 warnings in 12.72s ================ debian/rules execute_after_dh_auto_test make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/mypy.ini' rm -v /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8 && : removed '/build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/.flake8' make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/augur/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/augur-24.4.0/debian/augur /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v1.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequencies.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titer_model.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/titers.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/frequency_estimators.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/distance.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/lbi.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/sequence_traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/traits.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/clades.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/reconstruct_sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/translate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/export_v2.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/ancestral.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/refine.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/tree.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/align.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/mask.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/index.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/parse.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/argparse_.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate_export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__version__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/types.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__pycache__ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/titlecase.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/passthru.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/normalize_strings.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates_directives.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/format_dates.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/format_dates_directives.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/normalize_strings.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/passthru.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/curate/titlecase.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/colors.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/lat_longs.tsv -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-annotations.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-auspice-config-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-root-sequence.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-meta.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v1-tree.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-export-v2.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements-collection-config.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-measurements.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/schema-tip-frequencies.json -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/data/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/ambiguous_date.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/errors.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/ambiguous_date.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/dates/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/subsample.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/_run.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/include_exclude_rules.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/constants.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/io.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/_run.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/constants.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/include_exclude_rules.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/io.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/subsample.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filter/validate_arguments.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/beast.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/import_/beast.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_ creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/shell_command_runner.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/vcf.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/strains.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/sequences.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/print.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/metadata.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/json.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/metadata.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/print.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/shell_command_runner.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/strains.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/io/vcf.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/concat.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/export.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/concat.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/measurements/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support creating /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_file.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/node_data_reader.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser_line.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/color_parser.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__pycache__ copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/color_parser_line.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_file.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/util_support/node_data_reader.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__init__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__main__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/__version__.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/align.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/ancestral.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/argparse_.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/clades.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/distance.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/errors.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v1.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/export_v2.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/filenames.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequencies.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/frequency_estimators.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/index.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/lbi.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/mask.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/reconstruct_sequences.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/refine.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/sequence_traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titer_model.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/titers.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/traits.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/translate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/tree.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/types.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/utils.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/validate_export.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/version.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur copying /build/reproducible-path/augur-24.4.0/.pybuild/cpython3_3.13/build/augur/parse.py -> /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates.py to format_dates.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/format_dates_directives.py to format_dates_directives.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/normalize_strings.py to normalize_strings.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/passthru.py to passthru.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/curate/titlecase.py to titlecase.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/ambiguous_date.py to ambiguous_date.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/dates/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/_run.py to _run.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/constants.py to constants.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/include_exclude_rules.py to include_exclude_rules.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/io.py to io.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/subsample.py to subsample.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filter/validate_arguments.py to validate_arguments.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/import_/beast.py to beast.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/file.py to file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/json.py to json.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/metadata.py to metadata.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/print.py to print.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/sequences.py to sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/shell_command_runner.py to shell_command_runner.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/strains.py to strains.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/io/vcf.py to vcf.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/concat.py to concat.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/measurements/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data.py to node_data.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__main__.py to __main__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/__version__.py to __version__.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/align.py to align.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/ancestral.py to ancestral.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/argparse_.py to argparse_.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/clades.py to clades.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/distance.py to distance.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/errors.py to errors.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export.py to export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v1.py to export_v1.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/export_v2.py to export_v2.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/filenames.py to filenames.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequencies.py to frequencies.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/index.py to index.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/lbi.py to lbi.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/mask.py to mask.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/refine.py to refine.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titer_model.py to titer_model.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/titers.py to titers.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/traits.py to traits.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/translate.py to translate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/tree.py to tree.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/types.py to types.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/utils.py to utils.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/validate_export.py to validate_export.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/augur/parse.py to parse.cpython-313.pyc running install_egg_info running egg_info creating nextstrain_augur.egg-info writing nextstrain_augur.egg-info/PKG-INFO writing dependency_links to nextstrain_augur.egg-info/dependency_links.txt writing entry points to nextstrain_augur.egg-info/entry_points.txt writing requirements to nextstrain_augur.egg-info/requires.txt writing top-level names to nextstrain_augur.egg-info/top_level.txt writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.nextstrain-cli' adding license file 'LICENSE.txt' writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' Copying nextstrain_augur.egg-info to /build/reproducible-path/augur-24.4.0/debian/augur/usr/lib/python3.13/dist-packages/nextstrain_augur-24.4.0.egg-info Skipping SOURCES.txt running install_scripts Installing augur script to /build/reproducible-path/augur-24.4.0/debian/augur/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/augur-24.4.0' dh_install find debian -name LICENSE.txt -delete find debian -name '*.fasta' -delete rm -f -r debian/augur/usr/lib/python3.*/dist-packages/.mypy_cache make[1]: Leaving directory '/build/reproducible-path/augur-24.4.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/augur/usr/bin/augur dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'augur' in '../augur_24.4.0-3_all.deb'. dpkg-genbuildinfo --build=binary -O../augur_24.4.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../augur_24.4.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3136133 and its subdirectories I: Current time: Wed Oct 21 09:24:53 -12 2026 I: pbuilder-time-stamp: 1792617893