I: pbuilder: network access will be disabled during build
I: Current time: Sun Apr 13 20:17:09 -12 2025
I: pbuilder-time-stamp: 1744618629
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [promod3_3.4.2+ds-1.dsc]
I: copying [./promod3_3.4.2+ds.orig.tar.xz]
I: copying [./promod3_3.4.2+ds-1.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./promod3_3.4.2+ds-1.dsc: unsupported subcommand
dpkg-source: info: extracting promod3 in promod3-3.4.2+ds
dpkg-source: info: unpacking promod3_3.4.2+ds.orig.tar.xz
dpkg-source: info: unpacking promod3_3.4.2+ds-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying find-OST.patch
dpkg-source: info: applying add-python3-shebangs.patch
dpkg-source: info: applying promod-executable.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/3287521/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='trixie'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='688656fa635340819bb19f70f7573724'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='3287521'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.u4Z7lRNN/pbuilderrc_zm5I --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.u4Z7lRNN/b1 --logfile b1/build.log promod3_3.4.2+ds-1.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
I: uname -a
  Linux infom01-amd64 6.1.0-33-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.133-1 (2025-04-10) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Mar  4 11:20 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/3287521/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: cmake, debhelper-compat (= 13), dh-python, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libboost-python-dev, libboost-test-dev, libeigen3-dev, libost-base-dev, libost-conop-dev, libost-geom-dev, libost-img-dev, libost-info-dev, libost-io-dev, libost-mol-alg-dev, libost-mol-dev, libost-mol-mm-dev, libost-seq-alg-dev, libost-seq-dev, libsqlite3-dev, openstructure (>= 2.5.0), python3-dev, python3-ost
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19830 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however:
  Package libboost-filesystem-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however:
  Package libboost-iostreams-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however:
  Package libboost-program-options-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-python-dev; however:
  Package libboost-python-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libboost-test-dev; however:
  Package libboost-test-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libeigen3-dev; however:
  Package libeigen3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-base-dev; however:
  Package libost-base-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-conop-dev; however:
  Package libost-conop-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-geom-dev; however:
  Package libost-geom-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-img-dev; however:
  Package libost-img-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-info-dev; however:
  Package libost-info-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-io-dev; however:
  Package libost-io-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-mol-alg-dev; however:
  Package libost-mol-alg-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-mol-dev; however:
  Package libost-mol-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-mol-mm-dev; however:
  Package libost-mol-mm-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-seq-alg-dev; however:
  Package libost-seq-alg-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libost-seq-dev; however:
  Package libost-seq-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however:
  Package libsqlite3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on openstructure (>= 2.5.0); however:
  Package openstructure is not installed.
 pbuilder-satisfydepends-dummy depends on python3-dev; however:
  Package python3-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-ost; however:
  Package python3-ost is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libblas3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-test-dev{a} libboost-test1.83-dev{a} libboost-test1.83.0{a} libboost-thread1.83.0{a} libboost1.83-dev{a} libbrotli1{a} libcom-err2{a} libcups2t64{a} libcurl4t64{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdouble-conversion3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm2{a} libedit2{a} libegl-mesa0{a} libegl1{a} libeigen3-dev{a} libelf1t64{a} libevdev2{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfftw3-single3{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgbm1{a} libgcrypt20{a} libgfortran5{a} libgl1{a} libgl1-mesa-dri{a} libglib2.0-0t64{a} libglu1-mesa{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgnutls30t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgudev-1.0-0{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu76{a} libidn2-0{a} libimagequant0{a} libinput-bin{a} libinput10{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblcms2-2{a} libldap2{a} liblerc4{a} libllvm19{a} libmagic-mgc{a} libmagic1t64{a} libmd4c0{a} libmtdev1t64{a} libnghttp2-14{a} libnghttp3-9{a} libopengl0{a} libopenjp2-7{a} libopenmm8.1{a} libost-base-dev{a} libost-base2.9{a} libost-bindings2.9{a} libost-conop-dev{a} libost-conop2.9{a} libost-db2.9{a} libost-geom-dev{a} libost-geom2.9{a} libost-gfx2.9{a} libost-gui2.9{a} libost-img-alg2.9{a} libost-img-dev{a} libost-img2.9{a} libost-info-dev{a} libost-info2.9{a} libost-io-dev{a} libost-io2.9{a} libost-mol-alg-dev{a} libost-mol-alg2.9{a} libost-mol-dev{a} libost-mol-mm-dev{a} libost-mol-mm2.9{a} libost-mol2.9{a} libost-seq-alg-dev{a} libost-seq-alg2.9{a} libost-seq-dev{a} libost-seq2.9{a} libp11-kit0{a} libparasail8{a} libpciaccess0{a} libpcre2-16-0{a} libpipeline1{a} libpkgconf3{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libqt5core5t64{a} libqt5dbus5t64{a} libqt5designer5{a} libqt5gui5t64{a} libqt5help5{a} libqt5network5t64{a} libqt5printsupport5t64{a} libqt5sql5t64{a} libqt5test5t64{a} libqt5widgets5t64{a} libqt5xml5t64{a} libraqm0{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsharpyuv0{a} libsm6{a} libsqlite3-dev{a} libssh2-1t64{a} libtasn1-6{a} libtcl8.6{a} libtiff6{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libvulkan1{a} libwacom-common{a} libwacom9{a} libwayland-client0{a} libwayland-server0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-icccm4{a} libxcb-image0{a} libxcb-keysyms1{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render-util0{a} libxcb-render0{a} libxcb-shape0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-util1{a} libxcb-xfixes0{a} libxcb-xinerama0{a} libxcb-xinput0{a} libxcb-xkb1{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxkbcommon-x11-0{a} libxkbcommon0{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxslt1.1{a} libxss1{a} libxxf86vm1{a} libz3-4{a} libzopfli1{a} m4{a} man-db{a} media-types{a} mesa-libgallium{a} netbase{a} openstructure{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} python-matplotlib-data{a} python3{a} python3-attr{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-fonttools{a} python3-fs{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-mpmath{a} python3-numpy{a} python3-numpy-dev{a} python3-ost{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-platformdirs{a} python3-pyparsing{a} python3-pyqt5{a} python3-pyqt5.sip{a} python3-scipy{a} python3-sympy{a} python3-tk{a} python3-ufolib2{a} python3-unicodedata2{a} python3-zopfli{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} shared-mime-info{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} xkb-data{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl dbus isympy-common javascript-common krb5-locales libarchive-cpio-perl libcifpp-data libglib2.0-data libgpg-error-l10n libldap-common libltdl-dev libmail-sendmail-perl libqt5sql5-ibase libqt5sql5-mysql libqt5sql5-odbc libqt5sql5-psql libqt5sql5-sqlite libqt5sql5-tds libqt5svg5 libsasl2-modules linux-sysctl-defaults lynx mesa-vulkan-drivers psmisc publicsuffix python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch python3-yaml qt5-gtk-platformtheme qttranslations5-l10n qtwayland5 wget xdg-user-dirs 
0 packages upgraded, 300 newly installed, 0 to remove and 0 not upgraded.
Need to get 339 MB of archives. After unpacking 1241 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main amd64 libpython3.13-minimal amd64 3.13.2-3 [861 kB]
Get: 2 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get: 3 http://deb.debian.org/debian trixie/main amd64 python3.13-minimal amd64 3.13.2-3 [2212 kB]
Get: 4 http://deb.debian.org/debian trixie/main amd64 python3-minimal amd64 3.13.2-2 [27.1 kB]
Get: 5 http://deb.debian.org/debian trixie/main amd64 media-types all 13.0.0 [29.3 kB]
Get: 6 http://deb.debian.org/debian trixie/main amd64 netbase all 6.5 [12.4 kB]
Get: 7 http://deb.debian.org/debian trixie/main amd64 tzdata all 2025b-2 [260 kB]
Get: 8 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian trixie/main amd64 libpython3.13-stdlib amd64 3.13.2-3 [1952 kB]
Get: 12 http://deb.debian.org/debian trixie/main amd64 python3.13 amd64 3.13.2-3 [746 kB]
Get: 13 http://deb.debian.org/debian trixie/main amd64 libpython3-stdlib amd64 3.13.2-2 [10.1 kB]
Get: 14 http://deb.debian.org/debian trixie/main amd64 python3 amd64 3.13.2-2 [28.1 kB]
Get: 15 http://deb.debian.org/debian trixie/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [139 kB]
Get: 16 http://deb.debian.org/debian trixie/main amd64 libblas3 amd64 3.12.1-2 [160 kB]
Get: 17 http://deb.debian.org/debian trixie/main amd64 libgfortran5 amd64 14.2.0-19 [836 kB]
Get: 18 http://deb.debian.org/debian trixie/main amd64 liblapack3 amd64 3.12.1-2 [2452 kB]
Get: 19 http://deb.debian.org/debian trixie/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5096 kB]
Get: 20 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB]
Get: 21 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB]
Get: 22 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 23 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 24 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 25 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 26 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 27 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 28 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 29 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.41-4 [94.6 kB]
Get: 30 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 31 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 32 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB]
Get: 33 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB]
Get: 34 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get: 35 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB]
Get: 36 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 37 http://deb.debian.org/debian trixie/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1042 kB]
Get: 38 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get: 39 http://deb.debian.org/debian trixie/main amd64 libpng16-16t64 amd64 1.6.47-1.1 [282 kB]
Get: 40 http://deb.debian.org/debian trixie/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get: 41 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 42 http://deb.debian.org/debian trixie/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 43 http://deb.debian.org/debian trixie/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB]
Get: 44 http://deb.debian.org/debian trixie/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB]
Get: 45 http://deb.debian.org/debian trixie/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 46 http://deb.debian.org/debian trixie/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 47 http://deb.debian.org/debian trixie/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 48 http://deb.debian.org/debian trixie/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get: 49 http://deb.debian.org/debian trixie/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get: 50 http://deb.debian.org/debian trixie/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB]
Get: 51 http://deb.debian.org/debian trixie/main amd64 libxft2 amd64 2.3.6-1+b4 [54.5 kB]
Get: 52 http://deb.debian.org/debian trixie/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 53 http://deb.debian.org/debian trixie/main amd64 x11-common all 1:7.7+24 [217 kB]
Get: 54 http://deb.debian.org/debian trixie/main amd64 libxss1 amd64 1:1.2.3-1+b3 [17.0 kB]
Get: 55 http://deb.debian.org/debian trixie/main amd64 libtk8.6 amd64 8.6.16-1 [793 kB]
Get: 56 http://deb.debian.org/debian trixie/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [591 kB]
Get: 57 http://deb.debian.org/debian trixie/main amd64 blt amd64 2.5.3+dfsg-8 [5984 B]
Get: 58 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-2 [2268 kB]
Get: 59 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB]
Get: 60 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB]
Get: 61 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get: 62 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get: 63 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get: 64 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 65 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get: 66 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get: 67 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get: 68 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get: 69 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get: 70 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get: 71 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get: 72 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 73 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get: 74 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 75 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 76 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get: 77 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get: 78 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 79 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 80 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0-1 [381 kB]
Get: 81 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB]
Get: 82 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB]
Get: 83 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB]
Get: 84 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-2 [12.0 MB]
Get: 85 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB]
Get: 86 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB]
Get: 87 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 88 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 89 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 90 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 91 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 92 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 93 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 94 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 95 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 96 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB]
Get: 97 http://deb.debian.org/debian trixie/main amd64 dh-python all 6.20250308 [115 kB]
Get: 98 http://deb.debian.org/debian trixie/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB]
Get: 99 http://deb.debian.org/debian trixie/main amd64 fonts-lyx all 2.4.3-1 [190 kB]
Get: 100 http://deb.debian.org/debian trixie/main amd64 libicu76 amd64 76.1-3 [9721 kB]
Get: 101 http://deb.debian.org/debian trixie/main amd64 icu-devtools amd64 76.1-3 [215 kB]
Get: 102 http://deb.debian.org/debian trixie/main amd64 libavahi-common-data amd64 0.8-16 [112 kB]
Get: 103 http://deb.debian.org/debian trixie/main amd64 libavahi-common3 amd64 0.8-16 [44.2 kB]
Get: 104 http://deb.debian.org/debian trixie/main amd64 libdbus-1-3 amd64 1.16.2-2 [178 kB]
Get: 105 http://deb.debian.org/debian trixie/main amd64 libavahi-client3 amd64 0.8-16 [48.4 kB]
Get: 106 http://deb.debian.org/debian trixie/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB]
Get: 107 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4.2 [234 kB]
Get: 108 http://deb.debian.org/debian trixie/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4.2 [236 kB]
Get: 109 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4.2 [282 kB]
Get: 110 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83.0 amd64 1.83.0-4.2 [231 kB]
Get: 111 http://deb.debian.org/debian trixie/main amd64 libboost-system1.83-dev amd64 1.83.0-4.2 [232 kB]
Get: 112 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4.2 [297 kB]
Get: 113 http://deb.debian.org/debian trixie/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B]
Get: 114 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83.0 amd64 1.83.0-4.2 [330 kB]
Get: 115 http://deb.debian.org/debian trixie/main amd64 libicu-dev amd64 76.1-3 [10.8 MB]
Get: 116 http://deb.debian.org/debian trixie/main amd64 libboost-regex1.83-dev amd64 1.83.0-4.2 [346 kB]
Get: 117 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4.2 [261 kB]
Get: 118 http://deb.debian.org/debian trixie/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B]
Get: 119 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.2 [347 kB]
Get: 120 http://deb.debian.org/debian trixie/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.2 [375 kB]
Get: 121 http://deb.debian.org/debian trixie/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B]
Get: 122 http://deb.debian.org/debian trixie/main amd64 libboost-python1.83.0 amd64 1.83.0-4.2 [306 kB]
Get: 123 http://deb.debian.org/debian trixie/main amd64 libpython3.13 amd64 3.13.2-3 [2158 kB]
Get: 124 http://deb.debian.org/debian trixie/main amd64 libexpat1-dev amd64 2.7.1-1 [161 kB]
Get: 125 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 126 http://deb.debian.org/debian trixie/main amd64 libpython3.13-dev amd64 3.13.2-3 [5015 kB]
Get: 127 http://deb.debian.org/debian trixie/main amd64 libpython3-dev amd64 3.13.2-2 [10.3 kB]
Get: 128 http://deb.debian.org/debian trixie/main amd64 python3.13-dev amd64 3.13.2-3 [506 kB]
Get: 129 http://deb.debian.org/debian trixie/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 130 http://deb.debian.org/debian trixie/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 131 http://deb.debian.org/debian trixie/main amd64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB]
Get: 132 http://deb.debian.org/debian trixie/main amd64 python3-dev amd64 3.13.2-2 [26.1 kB]
Get: 133 http://deb.debian.org/debian trixie/main amd64 libboost-python1.83-dev amd64 1.83.0-4.2 [328 kB]
Get: 134 http://deb.debian.org/debian trixie/main amd64 libboost-python-dev amd64 1.83.0.2+b2 [3892 B]
Get: 135 http://deb.debian.org/debian trixie/main amd64 libboost-test1.83.0 amd64 1.83.0-4.2 [471 kB]
Get: 136 http://deb.debian.org/debian trixie/main amd64 libboost-test1.83-dev amd64 1.83.0-4.2 [541 kB]
Get: 137 http://deb.debian.org/debian trixie/main amd64 libboost-test-dev amd64 1.83.0.2+b2 [3628 B]
Get: 138 http://deb.debian.org/debian trixie/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.2 [270 kB]
Get: 139 http://deb.debian.org/debian trixie/main amd64 libcups2t64 amd64 2.4.10-2+b1 [251 kB]
Get: 140 http://deb.debian.org/debian trixie/main amd64 libdeflate0 amd64 1.23-1+b1 [47.5 kB]
Get: 141 http://deb.debian.org/debian trixie/main amd64 libdouble-conversion3 amd64 3.3.1-1 [41.8 kB]
Get: 142 http://deb.debian.org/debian trixie/main amd64 libdrm-common all 2.4.124-2 [8288 B]
Get: 143 http://deb.debian.org/debian trixie/main amd64 libdrm2 amd64 2.4.124-2 [39.0 kB]
Get: 144 http://deb.debian.org/debian trixie/main amd64 libdrm-amdgpu1 amd64 2.4.124-2 [22.6 kB]
Get: 145 http://deb.debian.org/debian trixie/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB]
Get: 146 http://deb.debian.org/debian trixie/main amd64 libdrm-intel1 amd64 2.4.124-2 [64.1 kB]
Get: 147 http://deb.debian.org/debian trixie/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB]
Get: 148 http://deb.debian.org/debian trixie/main amd64 libwayland-server0 amd64 1.23.1-3 [34.4 kB]
Get: 149 http://deb.debian.org/debian trixie/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB]
Get: 150 http://deb.debian.org/debian trixie/main amd64 libllvm19 amd64 1:19.1.7-3 [26.0 MB]
Get: 151 http://deb.debian.org/debian trixie/main amd64 libsensors-config all 1:3.6.0-10 [14.6 kB]
Get: 152 http://deb.debian.org/debian trixie/main amd64 libsensors5 amd64 1:3.6.0-10+b1 [35.1 kB]
Get: 153 http://deb.debian.org/debian trixie/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [247 kB]
Get: 154 http://deb.debian.org/debian trixie/main amd64 libxcb-dri3-0 amd64 1.17.0-2+b1 [107 kB]
Get: 155 http://deb.debian.org/debian trixie/main amd64 libxcb-present0 amd64 1.17.0-2+b1 [106 kB]
Get: 156 http://deb.debian.org/debian trixie/main amd64 libxcb-randr0 amd64 1.17.0-2+b1 [117 kB]
Get: 157 http://deb.debian.org/debian trixie/main amd64 libxcb-sync1 amd64 1.17.0-2+b1 [109 kB]
Get: 158 http://deb.debian.org/debian trixie/main amd64 libxcb-xfixes0 amd64 1.17.0-2+b1 [109 kB]
Get: 159 http://deb.debian.org/debian trixie/main amd64 libxshmfence1 amd64 1.3.3-1 [10.9 kB]
Get: 160 http://deb.debian.org/debian trixie/main amd64 mesa-libgallium amd64 25.0.3-1 [9624 kB]
Get: 161 http://deb.debian.org/debian trixie/main amd64 libgbm1 amd64 25.0.3-1 [44.2 kB]
Get: 162 http://deb.debian.org/debian trixie/main amd64 libwayland-client0 amd64 1.23.1-3 [26.8 kB]
Get: 163 http://deb.debian.org/debian trixie/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB]
Get: 164 http://deb.debian.org/debian trixie/main amd64 libegl-mesa0 amd64 25.0.3-1 [128 kB]
Get: 165 http://deb.debian.org/debian trixie/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get: 166 http://deb.debian.org/debian trixie/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get: 167 http://deb.debian.org/debian trixie/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get: 168 http://deb.debian.org/debian trixie/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB]
Get: 169 http://deb.debian.org/debian trixie/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB]
Get: 170 http://deb.debian.org/debian trixie/main amd64 libevdev2 amd64 1.13.4+dfsg-1 [32.4 kB]
Get: 171 http://deb.debian.org/debian trixie/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB]
Get: 172 http://deb.debian.org/debian trixie/main amd64 libfribidi0 amd64 1.0.16-1 [26.5 kB]
Get: 173 http://deb.debian.org/debian trixie/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB]
Get: 174 http://deb.debian.org/debian trixie/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get: 175 http://deb.debian.org/debian trixie/main amd64 libglvnd0 amd64 1.7.0-1+b2 [52.0 kB]
Get: 176 http://deb.debian.org/debian trixie/main amd64 libxcb-glx0 amd64 1.17.0-2+b1 [122 kB]
Get: 177 http://deb.debian.org/debian trixie/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b4 [19.3 kB]
Get: 178 http://deb.debian.org/debian trixie/main amd64 libvulkan1 amd64 1.4.309.0-1 [130 kB]
Get: 179 http://deb.debian.org/debian trixie/main amd64 libgl1-mesa-dri amd64 25.0.3-1 [45.7 kB]
Get: 180 http://deb.debian.org/debian trixie/main amd64 libglx-mesa0 amd64 25.0.3-1 [143 kB]
Get: 181 http://deb.debian.org/debian trixie/main amd64 libglx0 amd64 1.7.0-1+b2 [34.9 kB]
Get: 182 http://deb.debian.org/debian trixie/main amd64 libgl1 amd64 1.7.0-1+b2 [89.5 kB]
Get: 183 http://deb.debian.org/debian trixie/main amd64 libglib2.0-0t64 amd64 2.84.1-1 [1514 kB]
Get: 184 http://deb.debian.org/debian trixie/main amd64 libopengl0 amd64 1.7.0-1+b2 [30.9 kB]
Get: 185 http://deb.debian.org/debian trixie/main amd64 libglu1-mesa amd64 9.0.2-1.1+b3 [184 kB]
Get: 186 http://deb.debian.org/debian trixie/main amd64 libgraphite2-3 amd64 1.3.14-2+b1 [75.4 kB]
Get: 187 http://deb.debian.org/debian trixie/main amd64 libgudev-1.0-0 amd64 238-6 [14.5 kB]
Get: 188 http://deb.debian.org/debian trixie/main amd64 libharfbuzz0b amd64 10.2.0-1+b1 [479 kB]
Get: 189 http://deb.debian.org/debian trixie/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB]
Get: 190 http://deb.debian.org/debian trixie/main amd64 libimagequant0 amd64 2.18.0-1+b2 [35.2 kB]
Get: 191 http://deb.debian.org/debian trixie/main amd64 libwacom-common all 2.14.0-1 [103 kB]
Get: 192 http://deb.debian.org/debian trixie/main amd64 libwacom9 amd64 2.14.0-1 [25.3 kB]
Get: 193 http://deb.debian.org/debian trixie/main amd64 libinput-bin amd64 1.28.1-1 [26.3 kB]
Get: 194 http://deb.debian.org/debian trixie/main amd64 libmtdev1t64 amd64 1.1.7-1 [22.6 kB]
Get: 195 http://deb.debian.org/debian trixie/main amd64 libinput10 amd64 1.28.1-1 [143 kB]
Get: 196 http://deb.debian.org/debian trixie/main amd64 libjbig0 amd64 2.1-6.1+b2 [32.1 kB]
Get: 197 http://deb.debian.org/debian trixie/main amd64 libjpeg62-turbo amd64 1:2.1.5-3.1 [168 kB]
Get: 198 http://deb.debian.org/debian trixie/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 199 http://deb.debian.org/debian trixie/main amd64 liblcms2-2 amd64 2.16-2 [160 kB]
Get: 200 http://deb.debian.org/debian trixie/main amd64 liblerc4 amd64 4.0.0+ds-5 [183 kB]
Get: 201 http://deb.debian.org/debian trixie/main amd64 libmd4c0 amd64 0.5.2-2+b1 [49.0 kB]
Get: 202 http://deb.debian.org/debian trixie/main amd64 libopenjp2-7 amd64 2.5.3-2 [204 kB]
Get: 203 http://deb.debian.org/debian trixie/main amd64 libopenmm8.1 amd64 8.1.2+dfsg-11 [1059 kB]
Get: 204 http://deb.debian.org/debian trixie/main amd64 libost-base2.9 amd64 2.9.3-1 [34.9 kB]
Get: 205 http://deb.debian.org/debian trixie/main amd64 libost-base-dev amd64 2.9.3-1 [29.0 kB]
Get: 206 http://deb.debian.org/debian trixie/main amd64 libost-geom2.9 amd64 2.9.3-1 [66.4 kB]
Get: 207 http://deb.debian.org/debian trixie/main amd64 libost-mol2.9 amd64 2.9.3-1 [395 kB]
Get: 208 http://deb.debian.org/debian trixie/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB]
Get: 209 http://deb.debian.org/debian trixie/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB]
Get: 210 http://deb.debian.org/debian trixie/main amd64 libqt5core5t64 amd64 5.15.15+dfsg-5 [1872 kB]
Get: 211 http://deb.debian.org/debian trixie/main amd64 libqt5xml5t64 amd64 5.15.15+dfsg-5 [126 kB]
Get: 212 http://deb.debian.org/debian trixie/main amd64 libost-info2.9 amd64 2.9.3-1 [167 kB]
Get: 213 http://deb.debian.org/debian trixie/main amd64 libost-seq2.9 amd64 2.9.3-1 [91.0 kB]
Get: 214 http://deb.debian.org/debian trixie/main amd64 libost-bindings2.9 amd64 2.9.3-1 [204 kB]
Get: 215 http://deb.debian.org/debian trixie/main amd64 libost-conop2.9 amd64 2.9.3-1 [189 kB]
Get: 216 http://deb.debian.org/debian trixie/main amd64 libost-conop-dev amd64 2.9.3-1 [23.4 kB]
Get: 217 http://deb.debian.org/debian trixie/main amd64 libost-db2.9 amd64 2.9.3-1 [45.7 kB]
Get: 218 http://deb.debian.org/debian trixie/main amd64 libost-geom-dev amd64 2.9.3-1 [30.0 kB]
Get: 219 http://deb.debian.org/debian trixie/main amd64 libost-img2.9 amd64 2.9.3-1 [144 kB]
Get: 220 http://deb.debian.org/debian trixie/main amd64 libost-img-alg2.9 amd64 2.9.3-1 [170 kB]
Get: 221 http://deb.debian.org/debian trixie/main amd64 libost-gfx2.9 amd64 2.9.3-1 [432 kB]
Get: 222 http://deb.debian.org/debian trixie/main amd64 libost-mol-alg2.9 amd64 2.9.3-1 [370 kB]
Get: 223 http://deb.debian.org/debian trixie/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [116 kB]
Get: 224 http://deb.debian.org/debian trixie/main amd64 libwebp7 amd64 1.5.0-0.1 [318 kB]
Get: 225 http://deb.debian.org/debian trixie/main amd64 libtiff6 amd64 4.7.0-3 [346 kB]
Get: 226 http://deb.debian.org/debian trixie/main amd64 libost-io2.9 amd64 2.9.3-1 [883 kB]
Get: 227 http://deb.debian.org/debian trixie/main amd64 libparasail8 amd64 2.6.2+dfsg-2 [1890 kB]
Get: 228 http://deb.debian.org/debian trixie/main amd64 libost-seq-alg2.9 amd64 2.9.3-1 [255 kB]
Get: 229 http://deb.debian.org/debian trixie/main amd64 libegl1 amd64 1.7.0-1+b2 [34.6 kB]
Get: 230 http://deb.debian.org/debian trixie/main amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-5 [217 kB]
Get: 231 http://deb.debian.org/debian trixie/main amd64 libqt5network5t64 amd64 5.15.15+dfsg-5 [682 kB]
Get: 232 http://deb.debian.org/debian trixie/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB]
Get: 233 http://deb.debian.org/debian trixie/main amd64 libxcb-icccm4 amd64 0.4.2-1 [27.5 kB]
Get: 234 http://deb.debian.org/debian trixie/main amd64 libxcb-util1 amd64 0.4.1-1 [23.5 kB]
Get: 235 http://deb.debian.org/debian trixie/main amd64 libxcb-image0 amd64 0.4.0-2+b2 [22.2 kB]
Get: 236 http://deb.debian.org/debian trixie/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [16.7 kB]
Get: 237 http://deb.debian.org/debian trixie/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB]
Get: 238 http://deb.debian.org/debian trixie/main amd64 libxcb-render-util0 amd64 0.3.10-1 [18.4 kB]
Get: 239 http://deb.debian.org/debian trixie/main amd64 libxcb-shape0 amd64 1.17.0-2+b1 [106 kB]
Get: 240 http://deb.debian.org/debian trixie/main amd64 libxcb-xinerama0 amd64 1.17.0-2+b1 [105 kB]
Get: 241 http://deb.debian.org/debian trixie/main amd64 libxcb-xinput0 amd64 1.17.0-2+b1 [130 kB]
Get: 242 http://deb.debian.org/debian trixie/main amd64 libxcb-xkb1 amd64 1.17.0-2+b1 [130 kB]
Get: 243 http://deb.debian.org/debian trixie/main amd64 xkb-data all 2.42-1 [790 kB]
Get: 244 http://deb.debian.org/debian trixie/main amd64 libxkbcommon0 amd64 1.7.0-2 [113 kB]
Get: 245 http://deb.debian.org/debian trixie/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [16.2 kB]
Get: 246 http://deb.debian.org/debian trixie/main amd64 libqt5gui5t64 amd64 5.15.15+dfsg-5 [3497 kB]
Get: 247 http://deb.debian.org/debian trixie/main amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-5 [2398 kB]
Get: 248 http://deb.debian.org/debian trixie/main amd64 libost-gui2.9 amd64 2.9.3-1 [508 kB]
Get: 249 http://deb.debian.org/debian trixie/main amd64 libost-img-dev amd64 2.9.3-1 [44.6 kB]
Get: 250 http://deb.debian.org/debian trixie/main amd64 libost-info-dev amd64 2.9.3-1 [21.8 kB]
Get: 251 http://deb.debian.org/debian trixie/main amd64 libost-io-dev amd64 2.9.3-1 [53.4 kB]
Get: 252 http://deb.debian.org/debian trixie/main amd64 libost-mol-alg-dev amd64 2.9.3-1 [32.6 kB]
Get: 253 http://deb.debian.org/debian trixie/main amd64 libost-mol-dev amd64 2.9.3-1 [59.3 kB]
Get: 254 http://deb.debian.org/debian trixie/main amd64 libost-mol-mm2.9 amd64 2.9.3-1 [298 kB]
Get: 255 http://deb.debian.org/debian trixie/main amd64 libost-mol-mm-dev amd64 2.9.3-1 [29.7 kB]
Get: 256 http://deb.debian.org/debian trixie/main amd64 libost-seq-alg-dev amd64 2.9.3-1 [179 kB]
Get: 257 http://deb.debian.org/debian trixie/main amd64 libost-seq-dev amd64 2.9.3-1 [25.9 kB]
Get: 258 http://deb.debian.org/debian trixie/main amd64 libqhull-r8.0 amd64 2020.2-6+b2 [248 kB]
Get: 259 http://deb.debian.org/debian trixie/main amd64 libqt5designer5 amd64 5.15.15-6 [2758 kB]
Get: 260 http://deb.debian.org/debian trixie/main amd64 libqt5sql5t64 amd64 5.15.15+dfsg-5 [125 kB]
Get: 261 http://deb.debian.org/debian trixie/main amd64 libqt5help5 amd64 5.15.15-6 [151 kB]
Get: 262 http://deb.debian.org/debian trixie/main amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-5 [206 kB]
Get: 263 http://deb.debian.org/debian trixie/main amd64 libqt5test5t64 amd64 5.15.15+dfsg-5 [151 kB]
Get: 264 http://deb.debian.org/debian trixie/main amd64 libraqm0 amd64 0.10.2-1 [13.9 kB]
Get: 265 http://deb.debian.org/debian trixie/main amd64 libsqlite3-dev amd64 3.46.1-3 [1107 kB]
Get: 266 http://deb.debian.org/debian trixie/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [113 kB]
Get: 267 http://deb.debian.org/debian trixie/main amd64 libwebpmux3 amd64 1.5.0-0.1 [126 kB]
Get: 268 http://deb.debian.org/debian trixie/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB]
Get: 269 http://deb.debian.org/debian trixie/main amd64 libzopfli1 amd64 1.0.3-3 [106 kB]
Get: 270 http://deb.debian.org/debian trixie/main amd64 python-matplotlib-data all 3.10.1+dfsg1-2 [2736 kB]
Get: 271 http://deb.debian.org/debian trixie/main amd64 python3-dateutil all 2.9.0-4 [79.4 kB]
Get: 272 http://deb.debian.org/debian trixie/main amd64 python3-pil amd64 11.1.0-5+b1 [513 kB]
Get: 273 http://deb.debian.org/debian trixie/main amd64 python3.13-tk amd64 3.13.2-3 [107 kB]
Get: 274 http://deb.debian.org/debian trixie/main amd64 python3-tk amd64 3.13.3-1 [9548 B]
Get: 275 http://deb.debian.org/debian trixie/main amd64 python3-pil.imagetk amd64 11.1.0-5+b1 [81.6 kB]
Get: 276 http://deb.debian.org/debian trixie/main amd64 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 277 http://deb.debian.org/debian trixie/main amd64 python3-contourpy amd64 1.3.1-1+b1 [216 kB]
Get: 278 http://deb.debian.org/debian trixie/main amd64 python3-cycler all 0.12.1-1 [9496 B]
Get: 279 http://deb.debian.org/debian trixie/main amd64 python3-brotli amd64 1.1.0-2+b7 [320 kB]
Get: 280 http://deb.debian.org/debian trixie/main amd64 python3-platformdirs all 4.3.7-1 [16.6 kB]
Get: 281 http://deb.debian.org/debian trixie/main amd64 python3-fs all 2.4.16-7 [95.2 kB]
Get: 282 http://deb.debian.org/debian trixie/main amd64 python3-lxml amd64 5.3.2-1 [1297 kB]
Get: 283 http://deb.debian.org/debian trixie/main amd64 python3-lz4 amd64 4.4.0+dfsg-2 [25.3 kB]
Get: 284 http://deb.debian.org/debian trixie/main amd64 python3-decorator all 5.1.1-5 [15.1 kB]
Get: 285 http://deb.debian.org/debian trixie/main amd64 python3-scipy amd64 1.15.2-7 [16.3 MB]
Get: 286 http://deb.debian.org/debian trixie/main amd64 python3-mpmath all 1.3.0-1 [419 kB]
Get: 287 http://deb.debian.org/debian trixie/main amd64 python3-sympy all 1.13.3-5 [4148 kB]
Get: 288 http://deb.debian.org/debian trixie/main amd64 python3-attr all 25.3.0-1 [69.5 kB]
Get: 289 http://deb.debian.org/debian trixie/main amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.0 kB]
Get: 290 http://deb.debian.org/debian trixie/main amd64 python3-unicodedata2 amd64 15.1.0+ds-1+b4 [299 kB]
Get: 291 http://deb.debian.org/debian trixie/main amd64 python3-zopfli amd64 0.2.3.post1-1+b1 [10.5 kB]
Get: 292 http://deb.debian.org/debian trixie/main amd64 unicode-data all 15.1.0-1 [8547 kB]
Get: 293 http://deb.debian.org/debian trixie/main amd64 python3-fonttools amd64 4.57.0-1 [1438 kB]
Get: 294 http://deb.debian.org/debian trixie/main amd64 python3-kiwisolver amd64 1.4.7-3+b1 [62.0 kB]
Get: 295 http://deb.debian.org/debian trixie/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 296 http://deb.debian.org/debian trixie/main amd64 python3-matplotlib amd64 3.10.1+dfsg1-2 [23.8 MB]
Get: 297 http://deb.debian.org/debian trixie/main amd64 python3-pyqt5.sip amd64 12.17.0-1+b1 [61.6 kB]
Get: 298 http://deb.debian.org/debian trixie/main amd64 python3-pyqt5 amd64 5.15.11+dfsg-2 [2508 kB]
Get: 299 http://deb.debian.org/debian trixie/main amd64 python3-ost amd64 2.9.3-1 [3992 kB]
Get: 300 http://deb.debian.org/debian trixie/main amd64 openstructure amd64 2.9.3-1 [93.1 MB]
Fetched 339 MB in 5s (72.1 MB/s)
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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Current default time zone: 'Etc/UTC'
Local time is now:      Mon Apr 14 08:19:16 UTC 2025.
Universal Time is now:  Mon Apr 14 08:19:16 UTC 2025.
Run 'dpkg-reconfigure tzdata' if you wish to change it.

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Regenerating fonts cache... done.
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Not building database; man-db/auto-update is not 'true'.
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Setting up libost-info-dev (2.9.3-1) ...
Setting up libost-seq2.9 (2.9.3-1) ...
Setting up libost-img2.9 (2.9.3-1) ...
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Setting up libboost-python-dev (1.83.0.2+b2) ...
Setting up libgl1:amd64 (1.7.0-1+b2) ...
Setting up libost-img-alg2.9 (2.9.3-1) ...
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Setting up libost-db2.9 (2.9.3-1) ...
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Setting up libqt5designer5:amd64 (5.15.15-6) ...
Setting up python3-pyqt5 (5.15.11+dfsg-2) ...
Setting up python3-fonttools (4.57.0-1) ...
Setting up python3-ufolib2 (0.17.1+dfsg1-1) ...
Setting up python3-matplotlib (3.10.1+dfsg1-2) ...
Setting up python3-ost (2.9.3-1) ...
Setting up openstructure (2.9.3-1) ...
Building compounds library, this may take a while... 0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZ
Processing triggers for libc-bin (2.41-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/promod3-3.4.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../promod3_3.4.2+ds-1_source.changes
dpkg-buildpackage: info: source package promod3
dpkg-buildpackage: info: source version 3.4.2+ds-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
dh clean --with python3
   dh_clean
 debian/rules binary
dh binary --with python3
   dh_update_autotools_config
   dh_autoreconf
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds'
dh_auto_configure -- \
	-DOPTIMIZE=ON -DDISABLE_DOCUMENTATION=ON -DOST_ROOT=/usr -DCOMPOUND_LIB=/var/cache/openstructure/compounds.chemlib
	cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DOPTIMIZE=ON -DDISABLE_DOCUMENTATION=ON -DOST_ROOT=/usr -DCOMPOUND_LIB=/var/cache/openstructure/compounds.chemlib ..
-- The CXX compiler identification is GNU 14.2.0
-- The C compiler identification is GNU 14.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
CMake Warning (dev) at CMakeLists.txt:58 (exec_program):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
CMake Warning (dev) at cmake_support/PROMOD3.cmake:980 (exec_program):
  Policy CMP0153 is not set: The exec_program command should not be called.
  Run "cmake --help-policy CMP0153" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.

  Use execute_process() instead.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:997 (get_compiler_version)
  CMakeLists.txt:87 (setup_compiler_flags)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Python: /usr/bin/python3 (found suitable version "3.13.2", minimum required is "3.6") found components: Interpreter Development Development.Module Development.Embed
CMake Warning (dev) at cmake_support/PROMOD3.cmake:1029 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:98 (setup_boost)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost package: python313
CMake Warning (dev) at cmake_support/PROMOD3.cmake:1043 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:98 (setup_boost)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: unit_test_framework
CMake Warning (dev) at cmake_support/PROMOD3.cmake:1050 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:98 (setup_boost)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: filesystem system
CMake Warning (dev) at cmake_support/PROMOD3.cmake:1054 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:98 (setup_boost)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: iostreams
CMake Warning (dev) at cmake_support/PROMOD3.cmake:1057 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:98 (setup_boost)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: program_options
CMake Warning (dev) at cmake_support/PROMOD3.cmake:1060 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:98 (setup_boost)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.53") found components: regex
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.3.0")
CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  config/src/CMakeLists.txt:8 (copy_if_different)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:593 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  core/init/CMakeLists.txt:9 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  core/src/CMakeLists.txt:33 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  core/pymod/CMakeLists.txt:15 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  core/pymod/CMakeLists.txt:15 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  core/pymod/CMakeLists.txt:15 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  core/pymod/CMakeLists.txt:15 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  core/pymod/CMakeLists.txt:15 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  core/tests/CMakeLists.txt:41 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  loop/src/CMakeLists.txt:52 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  loop/pymod/CMakeLists.txt:21 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  loop/pymod/CMakeLists.txt:21 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  loop/pymod/CMakeLists.txt:21 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  loop/tests/CMakeLists.txt:33 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  scoring/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  scoring/pymod/CMakeLists.txt:16 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  scoring/pymod/CMakeLists.txt:16 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  scoring/pymod/CMakeLists.txt:16 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  scoring/tests/CMakeLists.txt:14 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  scoring/tests/CMakeLists.txt:14 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  scoring/tests/CMakeLists.txt:14 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  sidechain/src/CMakeLists.txt:56 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  sidechain/pymod/CMakeLists.txt:22 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  sidechain/pymod/CMakeLists.txt:22 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  sidechain/pymod/CMakeLists.txt:22 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  sidechain/tests/CMakeLists.txt:11 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:315 (copy_if_different)
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:317 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:292 (stage_and_install_headers)
  modelling/src/CMakeLists.txt:50 (module)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:553 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:641 (copy_if_different)
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:645 (install):
  Policy CMP0177 is not set: install() DESTINATION paths are normalized.  Run
  "cmake --help-policy CMP0177" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  modelling/pymod/CMakeLists.txt:35 (pymod)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  modelling/tests/CMakeLists.txt:76 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:464 (copy_if_different)
  scripts/CMakeLists.txt:12 (script)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  scripts/CMakeLists.txt:15 (copy_if_different)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  actions/tests/CMakeLists.txt:14 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  actions/tests/CMakeLists.txt:14 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:724 (copy_if_different)
  actions/tests/CMakeLists.txt:14 (promod3_unittest)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:1230 (copy_if_different)
  actions/CMakeLists.txt:6 (pm_action)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:1230 (copy_if_different)
  actions/CMakeLists.txt:7 (pm_action)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:1230 (copy_if_different)
  actions/CMakeLists.txt:8 (pm_action)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake_support/PROMOD3.cmake:142 (add_custom_command):
  The following keywords are not supported when using
  add_custom_command(TARGET): DEPENDS.

  Policy CMP0175 is not set: add_custom_command() rejects invalid arguments.
  Run "cmake --help-policy CMP0175" for policy details.  Use the cmake_policy
  command to set the policy and suppress this warning.
Call Stack (most recent call first):
  cmake_support/PROMOD3.cmake:1230 (copy_if_different)
  actions/CMakeLists.txt:9 (pm_action)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- ProMod3 will be built with the following options:
   OpenStructure (-DOST_ROOT)       : /usr
   Compound library (-DCOMPOUND_LIB): /var/cache/openstructure/compounds.chemlib
   Optimized     (-DOPTIMIZE)       : ON
   Python                           : /usr/bin/python3
   Eigen3                           : /usr/include/eigen3

-- Configuring done (1.1s)
-- Generating done (0.2s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds'
   dh_auto_build
	cd obj-x86_64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/modelling_pymod.dir/DependInfo.cmake "--color="
make  -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/depend
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
make  -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/depend
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/CMakeFiles/config_header.dir/DependInfo.cmake "--color="
make  -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/depend
make  -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/loop_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/core_pymod.dir/DependInfo.cmake "--color="
make  -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/depend
make  -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/sidechain_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/scoring_pymod.dir/DependInfo.cmake "--color="
make  -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data_dir.dir/DependInfo.cmake "--color="
make  -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data_dir.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_pm.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data_dir.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init___init__.py_pymod.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/__init__.py
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64
make  -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/build
make  -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/build
make  -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/build
make  -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/config.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/config.hh
make  -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/build
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/loop/__init__.py
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/scoring/__init__.py
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/build
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/__init__.py
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/sidechain/__init__.py
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/scripts/pm.in -DOUT_FILE=pm -DOST_ROOT="/usr" -DLIBDIR=lib64 -DLIBEXECPATH=libexec/promod3 -DPYTHON_MODULE_PATH=python3.13/site-packages/ -DOST_PYMOD_PATH=/usr/lib/python3/dist-packages -DPython_EXECUTABLE=/usr/bin/python3 -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/build
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_closegaps.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_closegaps.py
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/build
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/helper.py
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  0%] Built target loop_pymod
[  1%] Generating ../../stage/lib64/python3.13/site-packages/promod3/__init__.py
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_molprobity.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_molprobity.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/core/init/__init__.py.in -DOUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/__init__.py -DOST_COMPOUNDS_CHEMLIB_PATH="\"/var/cache/openstructure/compounds.chemlib\"" -DOST_ROOT=/usr -DPROMOD3_VERSION_STRING=3.4.2 -DGIT_BRANCH= -DGIT_COMMIT_HASH= -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target scoring_data_dir
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color="
make  -f extras/CMakeFiles/bash-completion.dir/build.make extras/CMakeFiles/bash-completion.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/extras /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/extras /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/extras/CMakeFiles/bash-completion.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3
[  1%] Built target sidechain_data_dir
[  1%] Built target config_header
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/pm3argparse.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/pm3argparse.py
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target sidechain_pymod
[  1%] Built target subst_pm
[  1%] Built target scoring_pymod
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/depend
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f extras/CMakeFiles/bash-completion.dir/build.make extras/CMakeFiles/bash-completion.dir/build
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-model /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-model
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/promod3_scripts.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_pipeline.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_pipeline.py
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target loop_data_dir
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Generating ../stage/etc/bash_completion.d/pm-completion.bash
[  1%] Built target init___init__.py_pymod
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/extras && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/extras/pm-completion.bash.in -DOUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/etc/bash_completion.d/pm-completion.bash -DPM3_ACTION_NAMES=build-model\ build-rawmodel\ help\ build-sidechains -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake
make  -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/depend
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_ring_punches.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_ring_punches.py
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/build
[  1%] Built target core_pymod
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-rawmodel /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-rawmodel
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init_pymod.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm
[  1%] Built target create_stage
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-help /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-help
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/build
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_denovo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_denovo.py
make  -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Nothing to be done for 'core/init/CMakeFiles/init_pymod.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/depend
make  -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/depend
make  -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/depend
make  -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling_headers.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_fragger_handle.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_fragger_handle.py
[  1%] Built target init_pymod
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-sidechains /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-sidechains
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/build
make  -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./check_io.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./check_io.hh
make  -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_score_base.hh
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./extension_scheme.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./extension_scheme.hh
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_env.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_env.hh
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./bb_dep_rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./bb_dep_rotamer_lib.hh
[  1%] Built target bash-completion
[  1%] Built target promod3_scripts
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_reconstruct_sidechains.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_reconstruct_sidechains.py
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_positions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_positions.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_overall_scorer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./cluster.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./cluster.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./disulfid.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./disulfid.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_monte_carlo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_monte_carlo.py
[  1%] Built target actions
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scoring_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scoring_object_loader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./frame.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./frame.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./dynamic_spatial_organizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./dynamic_spatial_organizer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap_extender.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap_extender.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./amino_acid_atoms.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./amino_acid_atoms.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_mhandle_helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_mhandle_helper.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_graph.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./export_helper.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./export_helper.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_alignment_fiddling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_alignment_fiddling.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./backbone.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./backbone.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./model.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./model.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cb_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cb_packing_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_raw_model.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_raw_model.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./bb_trace_param.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./bb_trace_param.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./all_atom_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./all_atom_relaxer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_stems.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_stems.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_planar_rings.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_planar_rings.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./backbone_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./backbone_relaxer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./data_bag.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./data_bag.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./message.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./message.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_afdb_modelling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_afdb_modelling.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./ccd.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./ccd.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_sink.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_sink.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_hash_table.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_hash_table.hh
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./kic.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./kic.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_source.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_source.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_env_listener.hh
[  1%] Built target modelling_pymod
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./loop_candidate.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./loop_candidate.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_serializer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_serializer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./density_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./density_creator.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./runtime_profiling.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./runtime_profiling.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./density_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./density_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_closer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_closer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_cruncher.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_cruncher.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./forcefield_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./forcefield_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./superpose.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./superpose.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_density.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_density.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_cooler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_cooler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./enumerator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./enumerator.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./frag_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./frag_db.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_sampler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_group.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_group.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./fragger.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./fragger.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tree.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tree.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_id.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_id.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_scorer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./rigid_blocks.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./rigid_blocks.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tetrahedral_polytope.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tetrahedral_polytope.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_rule_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph_minimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph_minimizer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_entry.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_entry.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./torsion_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./torsion_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./idx_handler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./idx_handler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./score_container.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./score_container.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_reader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_reader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./loop_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./loop_object_loader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./eigen_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./eigen_types.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_scoring_function.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_scoring_function.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./scoring_weights.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./scoring_weights.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_reconstructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_reconstructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_score.hh
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./mm_system_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./mm_system_creator.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_connector.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_connector.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_env_listener.hh
[  1%] Built target promod3_core_headers
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./constraint_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./constraint_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_object_loader.hh
make  -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/depend
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./psipred_prediction.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./psipred_prediction.hh
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_score_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./motif_finder.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./motif_finder.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./stem_geom.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./stem_geom.hh
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./robin_hood.h /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./robin_hood.h
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_overall_scorer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lookup.hh
[  1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/geom_base.cc.o
[  1%] Building CXX object core/src/CMakeFiles/promod3_core.dir/superpose.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/geom_base.cc.o -MF CMakeFiles/promod3_core.dir/geom_base.cc.o.d -o CMakeFiles/promod3_core.dir/geom_base.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/geom_base.cc
[  4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/geom_stems.cc.o
[  4%] Building CXX object core/src/CMakeFiles/promod3_core.dir/cluster.cc.o
[  5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/graph.cc.o
[  5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/tree.cc.o
[  5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/graph_minimizer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/superpose.cc.o -MF CMakeFiles/promod3_core.dir/superpose.cc.o.d -o CMakeFiles/promod3_core.dir/superpose.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/superpose.cc
[  5%] Building CXX object core/src/CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/graph.cc.o -MF CMakeFiles/promod3_core.dir/graph.cc.o.d -o CMakeFiles/promod3_core.dir/graph.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/graph.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/cluster.cc.o -MF CMakeFiles/promod3_core.dir/cluster.cc.o.d -o CMakeFiles/promod3_core.dir/cluster.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/cluster.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/geom_stems.cc.o -MF CMakeFiles/promod3_core.dir/geom_stems.cc.o.d -o CMakeFiles/promod3_core.dir/geom_stems.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/geom_stems.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/tree.cc.o -MF CMakeFiles/promod3_core.dir/tree.cc.o.d -o CMakeFiles/promod3_core.dir/tree.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/tree.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o -MF CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o.d -o CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/tetrahedral_polytope.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_CORE -Dpromod3_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/src/CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -MF CMakeFiles/promod3_core.dir/graph_minimizer.cc.o.d -o CMakeFiles/promod3_core.dir/graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/src/graph_minimizer.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./afdb.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./afdb.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./torsion_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./torsion_sampler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_score.hh
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./ushort_vec.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./ushort_vec.hh
[  5%] Built target promod3_modelling_headers
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_packing_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_rule_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_clash_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./subrotamer_optimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./subrotamer_optimizer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scwrl3_energy_functions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scwrl3_energy_functions.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db_custom_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db_custom_types.hh
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  5%] Built target promod3_sidechain_headers
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  5%] Built target promod3_scoring_headers
[  5%] Built target promod3_loop_headers
[  5%] Linking CXX shared library ../../stage/lib64/libpromod3_core.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_core.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_core.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_core.so.3.4 -o ../../stage/lib64/libpromod3_core.so.3.4.2 CMakeFiles/promod3_core.dir/cluster.cc.o CMakeFiles/promod3_core.dir/geom_base.cc.o CMakeFiles/promod3_core.dir/geom_stems.cc.o CMakeFiles/promod3_core.dir/superpose.cc.o CMakeFiles/promod3_core.dir/graph.cc.o CMakeFiles/promod3_core.dir/tree.cc.o CMakeFiles/promod3_core.dir/tetrahedral_polytope.cc.o CMakeFiles/promod3_core.dir/graph_minimizer.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_core.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4 ../../stage/lib64/libpromod3_core.so
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  5%] Built target promod3_core
make  -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/depend
make  -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/_core.dir/DependInfo.cmake "--color="
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
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make  -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  7%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_graph_minimizer.cc.o
[  7%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_geom.cc.o
[  7%] Building CXX object core/pymod/CMakeFiles/_core.dir/wrap_core.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_geom.cc.o -MF CMakeFiles/_core.dir/export_geom.cc.o.d -o CMakeFiles/_core.dir/export_geom.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/export_geom.cc
[  7%] Building CXX object core/pymod/CMakeFiles/_core.dir/export_runtime_profiling.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_graph_minimizer.cc.o -MF CMakeFiles/_core.dir/export_graph_minimizer.cc.o.d -o CMakeFiles/_core.dir/export_graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/export_graph_minimizer.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/wrap_core.cc.o -MF CMakeFiles/_core.dir/wrap_core.cc.o.d -o CMakeFiles/_core.dir/wrap_core.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/wrap_core.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_core_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT core/pymod/CMakeFiles/_core.dir/export_runtime_profiling.cc.o -MF CMakeFiles/_core.dir/export_runtime_profiling.cc.o.d -o CMakeFiles/_core.dir/export_runtime_profiling.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/pymod/export_runtime_profiling.cc
[  8%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o
[  9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/backbone.cc.o
[  9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o
[  9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/all_atom_env.cc.o
[  9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o
[  9%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o -MF CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o.d -o CMakeFiles/promod3_loop.dir/all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/all_atom_positions.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/all_atom_env.cc.o -MF CMakeFiles/promod3_loop.dir/all_atom_env.cc.o.d -o CMakeFiles/promod3_loop.dir/all_atom_env.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/all_atom_env.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o -MF CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o.d -o CMakeFiles/promod3_loop.dir/amino_acid_atoms.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/amino_acid_atoms.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/backbone.cc.o -MF CMakeFiles/promod3_loop.dir/backbone.cc.o.d -o CMakeFiles/promod3_loop.dir/backbone.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/backbone.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o -MF CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o.d -o CMakeFiles/promod3_loop.dir/bb_trace_param.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/bb_trace_param.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/forcefield_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/forcefield_lookup.cc
[ 11%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/density_creator.cc.o
[ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/frag_db.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/density_creator.cc.o -MF CMakeFiles/promod3_loop.dir/density_creator.cc.o.d -o CMakeFiles/promod3_loop.dir/density_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/density_creator.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/frag_db.cc.o -MF CMakeFiles/promod3_loop.dir/frag_db.cc.o.d -o CMakeFiles/promod3_loop.dir/frag_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/frag_db.cc
[ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/fragger.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/fragger.cc.o -MF CMakeFiles/promod3_loop.dir/fragger.cc.o.d -o CMakeFiles/promod3_loop.dir/fragger.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/fragger.cc
[ 12%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o -MF CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o.d -o CMakeFiles/promod3_loop.dir/hydrogen_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/hydrogen_constructor.cc
[ 14%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/hydrogen_rule_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/hydrogen_rule_lookup.cc
[ 14%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/idx_handler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/idx_handler.cc.o -MF CMakeFiles/promod3_loop.dir/idx_handler.cc.o.d -o CMakeFiles/promod3_loop.dir/idx_handler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/idx_handler.cc
[ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o -MF CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o.d -o CMakeFiles/promod3_loop.dir/loop_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/loop_object_loader.cc
[ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o -MF CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o.d -o CMakeFiles/promod3_loop.dir/mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/mm_system_creator.cc
[ 15%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o -MF CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o.d -o CMakeFiles/promod3_loop.dir/psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/psipred_prediction.cc
[ 16%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/structure_db.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/structure_db.cc.o -MF CMakeFiles/promod3_loop.dir/structure_db.cc.o.d -o CMakeFiles/promod3_loop.dir/structure_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc
[ 16%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o -MF CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o.d -o CMakeFiles/promod3_loop.dir/torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/torsion_sampler.cc
[ 18%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o -MF CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o.d -o CMakeFiles/promod3_loop.dir/sidechain_atom_rule_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/sidechain_atom_rule_lookup.cc
[ 18%] Building CXX object loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_LOOP -Dpromod3_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/src/CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -MF CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o.d -o CMakeFiles/promod3_loop.dir/sidechain_atom_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/src/sidechain_atom_constructor.cc
[ 19%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/core/_core.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_core.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_core.dir/link.d -Wl,-z,relro -shared  -o ../../stage/lib64/python3.13/site-packages/promod3/core/_core.so CMakeFiles/_core.dir/export_geom.cc.o CMakeFiles/_core.dir/export_runtime_profiling.cc.o CMakeFiles/_core.dir/export_graph_minimizer.cc.o CMakeFiles/_core.dir/wrap_core.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 19%] Built target _core
In file included from /usr/include/c++/14/string:54,
                 from /usr/include/boost/assert/source_location.hpp:15,
                 from /usr/include/boost/exception/exception.hpp:9,
                 from /usr/include/boost/throw_exception.hpp:21,
                 from /usr/include/boost/smart_ptr/detail/shared_count.hpp:31,
                 from /usr/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /usr/include/boost/shared_ptr.hpp:17,
                 from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/structure_db.hh:22,
                 from /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:17:
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::length() const [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:904:15,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38,
    inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25:
/usr/include/c++/14/bits/basic_string.h:1084:16: warning: '*(const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::_M_string_length' may be used uninitialized [-Wmaybe-uninitialized]
 1084 |       { return _M_string_length; }
      |                ^~~~~~~~~~~~~~~~
In file included from /usr/include/boost/variant.hpp:17,
                 from /usr/include/ost/generic_property.hh:34,
                 from /usr/include/ost/mol/entity_base.hh:25,
                 from /usr/include/ost/mol/entity_view.hh:27,
                 from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/structure_db.hh:29:
/usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In file included from /usr/include/c++/14/string:42:
In static member function 'static void std::char_traits<char>::assign(char_type&, const char_type&)',
    inlined from 'static void std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::_S_copy(_CharT*, const _CharT*, size_type) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:433:23,
    inlined from 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]' at /usr/include/c++/14/bits/basic_string.h:882:18,
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38,
    inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25:
/usr/include/c++/14/bits/char_traits.h:350:16: warning: '((const std::char_traits<char>::char_type*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)))[16]' may be used uninitialized [-Wmaybe-uninitialized]
  350 |         __c1 = __c2;
      |                ^~~~
/usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38,
    inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
In member function 'std::__cxx11::basic_string<_CharT, _Traits, _Alloc>& std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator=(std::__cxx11::basic_string<_CharT, _Traits, _Alloc>&&) [with _CharT = char; _Traits = std::char_traits<char>; _Alloc = std::allocator<char>]',
    inlined from 'void boost::detail::variant::move_storage::internal_visit(T&, int) const [with T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/variant.hpp:597:21,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke_impl(int, Visitor&, VoidPtrCV, T*, mpl_::true_) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>]' at /usr/include/boost/variant/detail/visitation_impl.hpp:117:34,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl_invoke(int, Visitor&, VoidPtrCV, T*, NoBackupFlag, int) [with Visitor = move_storage; VoidPtrCV = void*; T = std::__cxx11::basic_string<char>; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:157:41,
    inlined from 'typename Visitor::result_type boost::detail::variant::visitation_impl(int, int, Visitor&, VoidPtrCV, mpl_::false_, NoBackupFlag, Which*, step0*) [with Which = mpl_::int_<0>; step0 = visitation_impl_step<boost::mpl::l_iter<boost::mpl::l_item<mpl_::long_<5>, std::__cxx11::basic_string<char>, boost::mpl::l_item<mpl_::long_<4>, float, boost::mpl::l_item<mpl_::long_<3>, int, boost::mpl::l_item<mpl_::long_<2>, bool, boost::mpl::l_item<mpl_::long_<1>, geom::Vec3, boost::mpl::l_end> > > > > >, boost::mpl::l_iter<boost::mpl::l_end> >; Visitor = move_storage; VoidPtrCV = void*; NoBackupFlag = boost::variant<std::__cxx11::basic_string<char>, float, int, bool, geom::Vec3>::has_fallback_type_]' at /usr/include/boost/variant/detail/visitation_impl.hpp:238:5,
    inlined from 'static typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor_impl(int, int, Visitor&, VoidPtrCV) [with Visitor = boost::detail::variant::move_storage; VoidPtrCV = void*; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2338:48,
    inlined from 'typename Visitor::result_type boost::variant<T0, TN>::internal_apply_visitor(Visitor&) [with Visitor = boost::detail::variant::move_storage; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2350:43,
    inlined from 'void boost::variant<T0, TN>::variant_assign(boost::variant<T0, TN>&&) [with T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2081:41,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2108:27,
    inlined from 'void boost::variant<T0, TN>::assign(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2095:10,
    inlined from 'typename boost::enable_if<boost::mpl::or_<boost::is_same<T, boost::variant<T0, TN> >, boost::detail::variant::is_variant_constructible_from<const T&, typename boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, boost::mpl::transform<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type, boost::mpl::protect<boost::detail::variant::quoted_enable_recursive<boost::variant<T0, TN> > > >, boost::mpl::identity<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_sequence_based_, typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, boost::detail::variant::make_variant_list<typename boost::mpl::eval_if<boost::variant<T0, TN>::is_recursive_, T0_, boost::mpl::identity<T> >::type, TN ...> >::type> >::type, boost::mpl::protect<boost::detail::make_reference_content<boost::detail::void_type> > >::type> >, boost::variant<T0, TN>&>::type boost::variant<T0, TN>::operator=(const T&) [with T = float; T0_ = std::__cxx11::basic_string<char>; TN = {float, int, bool, geom::Vec3}]' at /usr/include/boost/variant/variant.hpp:2160:15,
    inlined from 'void ost::GenericPropContainer<H>::SetFloatProp(const String&, Real) [with H = ost::mol::ResidueBase]' at /usr/include/ost/generic_property.hh:358:38,
    inlined from 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)' at /build/reproducible-path/promod3-3.4.2+ds/loop/src/structure_db.cc:331:25:
/usr/include/c++/14/bits/basic_string.h:905:24: warning: '*(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >*)((char*)&temp + offsetof(boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>,boost::variant<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, float, int, bool, geom::Vec3>::storage_.boost::aligned_storage<32, 8>::<unnamed>.boost::detail::aligned_storage::aligned_storage_imp<32, 8>::data_)).std::__cxx11::basic_string<char>::<anonymous>.std::__cxx11::basic_string<char>::<unnamed union>::_M_allocated_capacity' may be used uninitialized [-Wmaybe-uninitialized]
  905 |             _M_capacity(__str._M_allocated_capacity);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/boost/variant/variant.hpp: In function 'void {anonymous}::AssignResidueDepths(const ost::mol::EntityView&, const ost::mol::ChainView&)':
/usr/include/boost/variant/variant.hpp:2107:21: note: 'temp' declared here
 2107 |             variant temp(rhs);
      |                     ^~~~
[ 19%] Linking CXX shared library ../../stage/lib64/libpromod3_loop.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_loop.dir/link.txt --verbose=1
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4 ../../stage/lib64/libpromod3_loop.so
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_all_atom_positions.cc.o -MF CMakeFiles/_loop.dir/export_all_atom_positions.cc.o.d -o CMakeFiles/_loop.dir/export_all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_all_atom_positions.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/disulfid.cc.o -MF CMakeFiles/promod3_sidechain.dir/disulfid.cc.o.d -o CMakeFiles/promod3_sidechain.dir/disulfid.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/disulfid.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_backbone.cc.o -MF CMakeFiles/_loop.dir/export_backbone.cc.o.d -o CMakeFiles/_loop.dir/export_backbone.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_backbone.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o -MF CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o.d -o CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/bb_dep_rotamer_lib.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/frame.cc.o -MF CMakeFiles/promod3_sidechain.dir/frame.cc.o.d -o CMakeFiles/promod3_sidechain.dir/frame.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/frame.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o -MF CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o.d -o CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_amino_acid_atoms.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o -MF CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o.d -o CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/backbone_score_base.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o -MF CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o.d -o CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_forcefield_lookup.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_frag_db.cc.o -MF CMakeFiles/_loop.dir/export_frag_db.cc.o.d -o CMakeFiles/_loop.dir/export_frag_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_frag_db.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_fragger.cc.o -MF CMakeFiles/_loop.dir/export_fragger.cc.o.d -o CMakeFiles/_loop.dir/export_fragger.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_fragger.cc
[ 26%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_loop_object_loader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_loop_object_loader.cc.o -MF CMakeFiles/_loop.dir/export_loop_object_loader.cc.o.d -o CMakeFiles/_loop.dir/export_loop_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_loop_object_loader.cc
[ 28%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/particle_scoring.cc
[ 28%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl4_particle_scoring.cc
[ 28%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl3_particle_scoring.cc
[ 29%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o -MF CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o.d -o CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/vina_particle_scoring.cc
[ 29%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer.cc
[ 29%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_mm_system_creator.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_mm_system_creator.cc.o -MF CMakeFiles/_loop.dir/export_mm_system_creator.cc.o.d -o CMakeFiles/_loop.dir/export_mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_mm_system_creator.cc
[ 30%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_cruncher.cc
[ 30%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_density.cc
[ 32%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_psipred_prediction.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_psipred_prediction.cc.o -MF CMakeFiles/_loop.dir/export_psipred_prediction.cc.o.d -o CMakeFiles/_loop.dir/export_psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_psipred_prediction.cc
[ 32%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_structure_db.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_structure_db.cc.o -MF CMakeFiles/_loop.dir/export_structure_db.cc.o.d -o CMakeFiles/_loop.dir/export_structure_db.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_structure_db.cc
[ 32%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o -MF CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o.d -o CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/backbone_overall_scorer.cc
[ 32%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/export_torsion_sampler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/export_torsion_sampler.cc.o -MF CMakeFiles/_loop.dir/export_torsion_sampler.cc.o.d -o CMakeFiles/_loop.dir/export_torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_torsion_sampler.cc
[ 32%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_group.cc
[ 33%] Building CXX object loop/pymod/CMakeFiles/_loop.dir/wrap_loop.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_loop_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT loop/pymod/CMakeFiles/_loop.dir/wrap_loop.cc.o -MF CMakeFiles/_loop.dir/wrap_loop.cc.o.d -o CMakeFiles/_loop.dir/wrap_loop.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/wrap_loop.cc
[ 35%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_id.cc
[ 35%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lib.cc
[ 36%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lib_entry.cc
[ 36%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lib_reader.cc
[ 38%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o -MF CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o.d -o CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/scoring_object_loader.cc
[ 38%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/cbeta_env_listener.cc
[ 38%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o -MF CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/cb_packing_score.cc
[ 39%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o -MF CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/cbeta_score.cc
[ 40%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o -MF CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o.d -o CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/sidechain_connector.cc
[ 40%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o -MF CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o.d -o CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/sidechain_object_loader.cc
In file included from /usr/include/boost/python/override.hpp:13,
                 from /usr/include/boost/python/wrapper.hpp:8,
                 from /usr/include/boost/python/object/value_holder.hpp:15,
                 from /usr/include/boost/python/object/class_metadata.hpp:14,
                 from /usr/include/boost/python/class.hpp:23,
                 from /usr/include/boost/python.hpp:18,
                 from /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_mm_system_creator.cc:17:
In member function 'boost::python::converter::extract_rvalue<T>::result_type boost::python::converter::extract_rvalue<T>::operator()() const [with T = bool]',
    inlined from 'boost::python::extract<T>::operator result_type() const [with T = bool]' at /usr/include/boost/python/extract.hpp:136:23,
    inlined from 'void promod3::core::ConvertListToVector(const boost::python::list&, std::vector<T>&) [with T = bool]' at /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh:66:16:
/usr/include/boost/python/extract.hpp:185:11: warning: '*(bool*)((char*)&<unnamed> + offsetof(boost::python::extract<bool>,boost::python::extract<bool>::<unnamed>.boost::python::converter::extract_rvalue<bool>::m_data.boost::python::converter::rvalue_from_python_data<bool>::<unnamed>.boost::python::converter::rvalue_from_python_storage<bool>::storage))' may be used uninitialized [-Wmaybe-uninitialized]
  185 |           );
      |           ^
In file included from /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/export_mm_system_creator.cc:18:
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh: In function 'void promod3::core::ConvertListToVector(const boost::python::list&, std::vector<T>&) [with T = bool]':
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/export_helper.hh:66:32: note: '<anonymous>' declared here
   66 |     v.push_back(boost::python::extract<T>(l[i]));
      |                                ^~~~~~~~~~~~~~~~
[ 40%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_constructor.cc
[ 42%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o -MF CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o.d -o CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/rotamer_lookup.cc
[ 42%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/reduced_env_listener.cc
[ 43%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/reduced_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/reduced_score.cc.o -MF CMakeFiles/promod3_scoring.dir/reduced_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/reduced_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/reduced_score.cc
[ 43%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl4_rotamer_constructor.cc
[ 45%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/scwrl3_rotamer_constructor.cc
[ 45%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o -MF CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o.d -o CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/vina_rotamer_constructor.cc
[ 45%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/clash_env_listener.cc
[ 45%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/clash_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/clash_score.cc.o -MF CMakeFiles/promod3_scoring.dir/clash_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/clash_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/clash_score.cc
[ 46%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/density_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/density_score.cc.o -MF CMakeFiles/promod3_scoring.dir/density_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/density_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/density_score.cc
[ 46%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/hbond_env_listener.cc
[ 46%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/loop/_loop.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_loop.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_loop.dir/link.d -Wl,-z,relro -shared  -o ../../stage/lib64/python3.13/site-packages/promod3/loop/_loop.so CMakeFiles/_loop.dir/export_all_atom_env.cc.o CMakeFiles/_loop.dir/export_all_atom_positions.cc.o CMakeFiles/_loop.dir/export_amino_acid_atoms.cc.o CMakeFiles/_loop.dir/export_backbone.cc.o CMakeFiles/_loop.dir/export_forcefield_lookup.cc.o CMakeFiles/_loop.dir/export_frag_db.cc.o CMakeFiles/_loop.dir/export_fragger.cc.o CMakeFiles/_loop.dir/export_loop_object_loader.cc.o CMakeFiles/_loop.dir/export_mm_system_creator.cc.o CMakeFiles/_loop.dir/export_psipred_prediction.cc.o CMakeFiles/_loop.dir/export_structure_db.cc.o CMakeFiles/_loop.dir/export_torsion_sampler.cc.o CMakeFiles/_loop.dir/wrap_loop.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_loop.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 46%] Built target _loop
[ 47%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/hbond_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/hbond_score.cc.o -MF CMakeFiles/promod3_scoring.dir/hbond_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/hbond_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/hbond_score.cc
[ 47%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o -MF CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/ss_agreement_score.cc
[ 47%] Building CXX object sidechain/src/CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SIDECHAIN -Dpromod3_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/src/CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -MF CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o.d -o CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/subrotamer_optimizer.cc
[ 47%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/ss_agreement_env_listener.cc
[ 49%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/torsion_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/torsion_score.cc.o -MF CMakeFiles/promod3_scoring.dir/torsion_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/torsion_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/torsion_score.cc
[ 49%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o -MF CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/pairwise_score.cc
[ 50%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o -MF CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o.d -o CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/constraint_constructor.cc
[ 50%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_overall_scorer.cc
[ 50%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_interaction_env_listener.cc
[ 52%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_interaction_score.cc
[ 52%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_packing_score.cc
[ 53%] Building CXX object scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_SCORING -Dpromod3_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/src/CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -MF CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o.d -o CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/src/all_atom_clash_score.cc
[ 54%] Linking CXX shared library ../../stage/lib64/libpromod3_sidechain.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_sidechain.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_sidechain.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_sidechain.so.3.4 -o ../../stage/lib64/libpromod3_sidechain.so.3.4.2 CMakeFiles/promod3_sidechain.dir/bb_dep_rotamer_lib.cc.o CMakeFiles/promod3_sidechain.dir/disulfid.cc.o CMakeFiles/promod3_sidechain.dir/frame.cc.o CMakeFiles/promod3_sidechain.dir/particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/scwrl4_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/scwrl3_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/vina_particle_scoring.cc.o CMakeFiles/promod3_sidechain.dir/rotamer.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_cruncher.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_density.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_group.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_id.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib_entry.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lib_reader.cc.o CMakeFiles/promod3_sidechain.dir/sidechain_connector.cc.o CMakeFiles/promod3_sidechain.dir/sidechain_object_loader.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/rotamer_lookup.cc.o CMakeFiles/promod3_sidechain.dir/scwrl4_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/scwrl3_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/vina_rotamer_constructor.cc.o CMakeFiles/promod3_sidechain.dir/subrotamer_optimizer.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4 ../../stage/lib64/libpromod3_sidechain.so
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/_sidechain.dir/DependInfo.cmake "--color="
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make  -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 56%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_disulfid.cc.o
[ 56%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_frame.cc.o
[ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_disulfid.cc.o -MF CMakeFiles/_sidechain.dir/export_disulfid.cc.o.d -o CMakeFiles/_sidechain.dir/export_disulfid.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_disulfid.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_frame.cc.o -MF CMakeFiles/_sidechain.dir/export_frame.cc.o.d -o CMakeFiles/_sidechain.dir/export_frame.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_frame.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_graph.cc
[ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_connector.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_connector.cc.o -MF CMakeFiles/_sidechain.dir/export_connector.cc.o.d -o CMakeFiles/_sidechain.dir/export_connector.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_connector.cc
[ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_particle.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_particle.cc.o -MF CMakeFiles/_sidechain.dir/export_particle.cc.o.d -o CMakeFiles/_sidechain.dir/export_particle.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_particle.cc
[ 57%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer.cc
[ 59%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_cruncher.cc
[ 59%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_density.cc
[ 60%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_ids.cc
[ 60%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_lib.cc
[ 60%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o -MF CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o.d -o CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_sidechain_object_loader.cc
[ 60%] Linking CXX shared library ../../stage/lib64/libpromod3_scoring.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_scoring.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_scoring.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_scoring.so.3.4 -o ../../stage/lib64/libpromod3_scoring.so.3.4.2 CMakeFiles/promod3_scoring.dir/backbone_score_base.cc.o CMakeFiles/promod3_scoring.dir/backbone_overall_scorer.cc.o CMakeFiles/promod3_scoring.dir/scoring_object_loader.cc.o CMakeFiles/promod3_scoring.dir/cbeta_env_listener.cc.o CMakeFiles/promod3_scoring.dir/cb_packing_score.cc.o CMakeFiles/promod3_scoring.dir/cbeta_score.cc.o CMakeFiles/promod3_scoring.dir/reduced_env_listener.cc.o CMakeFiles/promod3_scoring.dir/reduced_score.cc.o CMakeFiles/promod3_scoring.dir/clash_env_listener.cc.o CMakeFiles/promod3_scoring.dir/clash_score.cc.o CMakeFiles/promod3_scoring.dir/density_score.cc.o CMakeFiles/promod3_scoring.dir/hbond_env_listener.cc.o CMakeFiles/promod3_scoring.dir/hbond_score.cc.o CMakeFiles/promod3_scoring.dir/ss_agreement_score.cc.o CMakeFiles/promod3_scoring.dir/ss_agreement_env_listener.cc.o CMakeFiles/promod3_scoring.dir/torsion_score.cc.o CMakeFiles/promod3_scoring.dir/pairwise_score.cc.o CMakeFiles/promod3_scoring.dir/constraint_constructor.cc.o CMakeFiles/promod3_scoring.dir/all_atom_overall_scorer.cc.o CMakeFiles/promod3_scoring.dir/all_atom_interaction_env_listener.cc.o CMakeFiles/promod3_scoring.dir/all_atom_interaction_score.cc.o CMakeFiles/promod3_scoring.dir/all_atom_packing_score.cc.o CMakeFiles/promod3_scoring.dir/all_atom_clash_score.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_scoring.so.3.4 ../../stage/lib64/libpromod3_scoring.so
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/_scoring.dir/DependInfo.cmake "--color="
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[ 61%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_backbone_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_backbone_score.cc.o -MF CMakeFiles/_scoring.dir/export_backbone_score.cc.o.d -o CMakeFiles/_scoring.dir/export_backbone_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_backbone_score.cc
[ 63%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o -MF CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o.d -o CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_rotamer_constructor.cc
[ 63%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o -MF CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o.d -o CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/export_subrotamer_optimizer.cc
[ 64%] Building CXX object sidechain/pymod/CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_sidechain_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT sidechain/pymod/CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o -MF CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o.d -o CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/wrap_sidechain.cc
[ 64%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_all_atom_score.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_all_atom_score.cc.o -MF CMakeFiles/_scoring.dir/export_all_atom_score.cc.o.d -o CMakeFiles/_scoring.dir/export_all_atom_score.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_all_atom_score.cc
[ 64%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_object_loader.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_object_loader.cc.o -MF CMakeFiles/_scoring.dir/export_object_loader.cc.o.d -o CMakeFiles/_scoring.dir/export_object_loader.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_object_loader.cc
[ 66%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o -MF CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o.d -o CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_pairwise_functions.cc
[ 66%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o -MF CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o.d -o CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_constraint_constructor.cc
[ 67%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o -MF CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o.d -o CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_scwrl3_energy_functions.cc
[ 67%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/export_density_scorer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/export_density_scorer.cc.o -MF CMakeFiles/_scoring.dir/export_density_scorer.cc.o.d -o CMakeFiles/_scoring.dir/export_density_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/export_density_scorer.cc
[ 69%] Building CXX object scoring/pymod/CMakeFiles/_scoring.dir/wrap_scoring.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_scoring_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT scoring/pymod/CMakeFiles/_scoring.dir/wrap_scoring.cc.o -MF CMakeFiles/_scoring.dir/wrap_scoring.cc.o.d -o CMakeFiles/_scoring.dir/wrap_scoring.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/wrap_scoring.cc
make  -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/depend
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling.dir/DependInfo.cmake "--color="
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make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o -MF CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o.d -o CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/extension_scheme.cc
[ 70%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/gap.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/gap.cc.o -MF CMakeFiles/promod3_modelling.dir/gap.cc.o.d -o CMakeFiles/promod3_modelling.dir/gap.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/gap.cc
[ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/gap_extender.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/gap_extender.cc.o -MF CMakeFiles/promod3_modelling.dir/gap_extender.cc.o.d -o CMakeFiles/promod3_modelling.dir/gap_extender.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/gap_extender.cc
[ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/model.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/model.cc.o -MF CMakeFiles/promod3_modelling.dir/model.cc.o.d -o CMakeFiles/promod3_modelling.dir/model.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc
[ 71%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o -MF CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o.d -o CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/all_atom_relaxer.cc
[ 73%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o -MF CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o.d -o CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/backbone_relaxer.cc
[ 73%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/ccd.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/ccd.cc.o -MF CMakeFiles/promod3_modelling.dir/ccd.cc.o.d -o CMakeFiles/promod3_modelling.dir/ccd.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/ccd.cc
[ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/kic.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/kic.cc.o -MF CMakeFiles/promod3_modelling.dir/kic.cc.o.d -o CMakeFiles/promod3_modelling.dir/kic.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/kic.cc
[ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o -MF CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o.d -o CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/loop_candidate.cc
[ 74%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo.cc
[ 76%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_closer.cc
/build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc: In function 'void promod3::modelling::MergeMHandle(const ModellingHandle&, ModellingHandle&, uint, uint, uint, uint, const geom::Mat4&)':
/build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc:402:17: warning: possibly dangling reference to a temporary [-Wdangling-reference]
  402 |   const String& seqres = source_mhandle.seqres[source_chain_idx].GetString();
      |                 ^~~~~~
/build/reproducible-path/promod3-3.4.2+ds/modelling/src/model.cc:402:75: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(((int)source_chain_idx)).ost::seq::SequenceHandle::GetString()'
  402 |   const String& seqres = source_mhandle.seqres[source_chain_idx].GetString();
      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
[ 76%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_cooler.cc
[ 77%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_sampler.cc
[ 77%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o -MF CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o.d -o CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/monte_carlo_scorer.cc
[ 77%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o -MF CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o.d -o CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/rigid_blocks.cc
[ 78%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/score_container.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/score_container.cc.o -MF CMakeFiles/promod3_modelling.dir/score_container.cc.o.d -o CMakeFiles/promod3_modelling.dir/score_container.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/score_container.cc
[ 78%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o -MF CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o.d -o CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/scoring_weights.cc
[ 80%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o -MF CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o.d -o CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/sidechain_reconstructor.cc
[ 80%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o -MF CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o.d -o CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/sidechain_env_listener.cc
[ 81%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/motif_finder.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/motif_finder.cc.o -MF CMakeFiles/promod3_modelling.dir/motif_finder.cc.o.d -o CMakeFiles/promod3_modelling.dir/motif_finder.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/motif_finder.cc
[ 81%] Building CXX object modelling/src/CMakeFiles/promod3_modelling.dir/afdb.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DPROMOD3_MODULE_PROMOD3_MODELLING -Dpromod3_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/src/CMakeFiles/promod3_modelling.dir/afdb.cc.o -MF CMakeFiles/promod3_modelling.dir/afdb.cc.o.d -o CMakeFiles/promod3_modelling.dir/afdb.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc
/build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc: In function 'void promod3::modelling::CreatePentaMatch(const ost::seq::SequenceList&, const String&, bool)':
/build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc:220:21: warning: possibly dangling reference to a temporary [-Wdangling-reference]
  220 |       const String& sname = seq_list[i].GetName();
      |                     ^~~~~
/build/reproducible-path/promod3-3.4.2+ds/modelling/src/afdb.cc:220:48: note: the temporary was destroyed at the end of the full expression 'ost::seq::SequenceList::operator[](int) const(i).ost::seq::SequenceHandle::GetName()'
  220 |       const String& sname = seq_list[i].GetName();
      |                             ~~~~~~~~~~~~~~~~~~~^~
[ 81%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/scoring/_scoring.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_scoring.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_scoring.dir/link.d -Wl,-z,relro -shared  -o ../../stage/lib64/python3.13/site-packages/promod3/scoring/_scoring.so CMakeFiles/_scoring.dir/export_backbone_score.cc.o CMakeFiles/_scoring.dir/export_all_atom_score.cc.o CMakeFiles/_scoring.dir/export_object_loader.cc.o CMakeFiles/_scoring.dir/export_pairwise_functions.cc.o CMakeFiles/_scoring.dir/export_constraint_constructor.cc.o CMakeFiles/_scoring.dir/export_scwrl3_energy_functions.cc.o CMakeFiles/_scoring.dir/export_density_scorer.cc.o CMakeFiles/_scoring.dir/wrap_scoring.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_scoring.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 81%] Built target _scoring
[ 81%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_sidechain.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_sidechain.dir/link.d -Wl,-z,relro -shared  -o ../../stage/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so CMakeFiles/_sidechain.dir/export_connector.cc.o CMakeFiles/_sidechain.dir/export_disulfid.cc.o CMakeFiles/_sidechain.dir/export_frame.cc.o CMakeFiles/_sidechain.dir/export_rotamer_graph.cc.o CMakeFiles/_sidechain.dir/export_particle.cc.o CMakeFiles/_sidechain.dir/export_rotamer.cc.o CMakeFiles/_sidechain.dir/export_rotamer_cruncher.cc.o CMakeFiles/_sidechain.dir/export_rotamer_density.cc.o CMakeFiles/_sidechain.dir/export_rotamer_ids.cc.o CMakeFiles/_sidechain.dir/export_rotamer_lib.cc.o CMakeFiles/_sidechain.dir/export_sidechain_object_loader.cc.o CMakeFiles/_sidechain.dir/export_rotamer_constructor.cc.o CMakeFiles/_sidechain.dir/export_subrotamer_optimizer.cc.o CMakeFiles/_sidechain.dir/wrap_sidechain.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_sidechain.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 81%] Built target _sidechain
In file included from /usr/include/eigen3/Eigen/Core:341,
                 from /usr/include/eigen3/Eigen/Dense:1,
                 from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/eigen_types.hh:23,
                 from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/superpose.hh:24,
                 from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/backbone.hh:33,
                 from /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/kic.hh:21,
                 from /build/reproducible-path/promod3-3.4.2+ds/modelling/src/kic.cc:17:
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h: In function 'static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, 16, 16>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1, 1, 1, 16> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, 16, 16>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]':
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: 'result' may be used uninitialized [-Wmaybe-uninitialized]
  327 |     internal::triangular_matrix_vector_product
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  328 |       <Index,Mode,
      |       ~~~~~~~~~~~~
  329 |        LhsScalar, LhsBlasTraits::NeedToConjugate,
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  330 |        RhsScalar, RhsBlasTraits::NeedToConjugate,
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  331 |        RowMajor>
      |        ~~~~~~~~~
  332 |       ::run(actualLhs.rows(),actualLhs.cols(),
      |       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  333 |             actualLhs.data(),actualLhs.outerStride(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  334 |             actualRhsPtr,1,
      |             ~~~~~~~~~~~~~~~
  335 |             dest.data(),dest.innerStride(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  336 |             actualAlpha);
      |             ~~~~~~~~~~~~
/usr/include/eigen3/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 4 of type 'const double*' to 'static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]' declared here
  105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 81%] Linking CXX shared library ../../stage/lib64/libpromod3_modelling.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/promod3_modelling.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/promod3_modelling.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libpromod3_modelling.so.3.4 -o ../../stage/lib64/libpromod3_modelling.so.3.4.2 CMakeFiles/promod3_modelling.dir/extension_scheme.cc.o CMakeFiles/promod3_modelling.dir/gap.cc.o CMakeFiles/promod3_modelling.dir/gap_extender.cc.o CMakeFiles/promod3_modelling.dir/model.cc.o CMakeFiles/promod3_modelling.dir/all_atom_relaxer.cc.o CMakeFiles/promod3_modelling.dir/backbone_relaxer.cc.o CMakeFiles/promod3_modelling.dir/ccd.cc.o CMakeFiles/promod3_modelling.dir/kic.cc.o CMakeFiles/promod3_modelling.dir/loop_candidate.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_closer.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_cooler.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_sampler.cc.o CMakeFiles/promod3_modelling.dir/monte_carlo_scorer.cc.o CMakeFiles/promod3_modelling.dir/rigid_blocks.cc.o CMakeFiles/promod3_modelling.dir/score_container.cc.o CMakeFiles/promod3_modelling.dir/scoring_weights.cc.o CMakeFiles/promod3_modelling.dir/sidechain_reconstructor.cc.o CMakeFiles/promod3_modelling.dir/sidechain_env_listener.cc.o CMakeFiles/promod3_modelling.dir/motif_finder.cc.o CMakeFiles/promod3_modelling.dir/afdb.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E cmake_symlink_library ../../stage/lib64/libpromod3_modelling.so.3.4.2 ../../stage/lib64/libpromod3_modelling.so.3.4 ../../stage/lib64/libpromod3_modelling.so
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 81%] Built target promod3_modelling
make  -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/_modelling.dir/DependInfo.cmake "--color="
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_loop_candidate.cc.o -MF CMakeFiles/_modelling.dir/export_loop_candidate.cc.o.d -o CMakeFiles/_modelling.dir/export_loop_candidate.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_loop_candidate.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_extension_scheme.cc.o -MF CMakeFiles/_modelling.dir/export_extension_scheme.cc.o.d -o CMakeFiles/_modelling.dir/export_extension_scheme.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_extension_scheme.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_monte_carlo.cc.o -MF CMakeFiles/_modelling.dir/export_monte_carlo.cc.o.d -o CMakeFiles/_modelling.dir/export_monte_carlo.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_monte_carlo.cc
[ 85%] Building CXX object modelling/pymod/CMakeFiles/_modelling.dir/export_loop_closure.cc.o
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_score_container.cc.o -MF CMakeFiles/_modelling.dir/export_score_container.cc.o.d -o CMakeFiles/_modelling.dir/export_score_container.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_score_container.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_scoring_weights.cc.o -MF CMakeFiles/_modelling.dir/export_scoring_weights.cc.o.d -o CMakeFiles/_modelling.dir/export_scoring_weights.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_scoring_weights.cc
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_gap.cc.o -MF CMakeFiles/_modelling.dir/export_gap.cc.o.d -o CMakeFiles/_modelling.dir/export_gap.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_gap.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_gap_extender.cc.o -MF CMakeFiles/_modelling.dir/export_gap_extender.cc.o.d -o CMakeFiles/_modelling.dir/export_gap_extender.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_gap_extender.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_loop_closure.cc.o -MF CMakeFiles/_modelling.dir/export_loop_closure.cc.o.d -o CMakeFiles/_modelling.dir/export_loop_closure.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_loop_closure.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_model.cc.o -MF CMakeFiles/_modelling.dir/export_model.cc.o.d -o CMakeFiles/_modelling.dir/export_model.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_model.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o -MF CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o.d -o CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_rigid_blocks.cc
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_motif_finder.cc.o -MF CMakeFiles/_modelling.dir/export_motif_finder.cc.o.d -o CMakeFiles/_modelling.dir/export_motif_finder.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_motif_finder.cc
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/export_afdb.cc.o -MF CMakeFiles/_modelling.dir/export_afdb.cc.o.d -o CMakeFiles/_modelling.dir/export_afdb.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/export_afdb.cc
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -D_modelling_EXPORTS -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -I/usr/include/python3.13 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -fPIC -MD -MT modelling/pymod/CMakeFiles/_modelling.dir/wrap_modelling.cc.o -MF CMakeFiles/_modelling.dir/wrap_modelling.cc.o.d -o CMakeFiles/_modelling.dir/wrap_modelling.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/wrap_modelling.cc
[ 90%] Linking CXX shared module ../../stage/lib64/python3.13/site-packages/promod3/modelling/_modelling.so
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E cmake_link_script CMakeFiles/_modelling.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,--dependency-file=CMakeFiles/_modelling.dir/link.d -Wl,-z,relro -shared  -o ../../stage/lib64/python3.13/site-packages/promod3/modelling/_modelling.so CMakeFiles/_modelling.dir/export_extension_scheme.cc.o CMakeFiles/_modelling.dir/export_gap.cc.o CMakeFiles/_modelling.dir/export_gap_extender.cc.o CMakeFiles/_modelling.dir/export_loop_candidate.cc.o CMakeFiles/_modelling.dir/export_loop_closure.cc.o CMakeFiles/_modelling.dir/export_model.cc.o CMakeFiles/_modelling.dir/export_monte_carlo.cc.o CMakeFiles/_modelling.dir/export_rigid_blocks.cc.o CMakeFiles/_modelling.dir/export_score_container.cc.o CMakeFiles/_modelling.dir/export_scoring_weights.cc.o CMakeFiles/_modelling.dir/export_sidechain_reconstructor.cc.o CMakeFiles/_modelling.dir/export_motif_finder.cc.o CMakeFiles/_modelling.dir/export_afdb.cc.o CMakeFiles/_modelling.dir/wrap_modelling.cc.o   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64: ../../stage/lib64/libpromod3_modelling.so.3.4.2 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 90%] Built target _modelling
make  -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/depend
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[ 90%] Built target _init
make  -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/depend
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[ 90%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_helical.dat
[ 91%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_extended.dat
[ 91%] Generating ../../stage/share/promod3/scoring_data/hbond_scorer.dat
[ 91%] Generating ../../stage/share/promod3/loop_data/torsion_sampler.dat
[ 91%] Generating ../../stage/share/promod3/scoring_data/cb_packing_scorer.dat
[ 92%] Generating ../../stage/share/promod3/scoring_data/cbeta_scorer.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler_extended.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_extended.dat'\ TorsionSampler
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler_helical.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_helical.dat'\ TorsionSampler
[ 94%] Generating ../../stage/share/promod3/loop_data/ff_lookup_charmm.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler.dat'\ TorsionSampler
[ 91%] Generating ../../stage/share/promod3/loop_data/torsion_sampler_coil.dat
[ 94%] Generating ../../stage/share/promod3/loop_data/frag_db.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_hbond_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/hbond_scorer.dat'\ HBondScorer
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_cb_packing_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/cb_packing_scorer.dat'\ CBPackingScorer
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_ff_lookup_charmm.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/ff_lookup_charmm.dat'\ ForcefieldLookup
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_torsion_sampler_coil.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/torsion_sampler_coil.dat'\ TorsionSampler
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_frag_db.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/frag_db.dat'\ FragDB
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_cbeta_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/cbeta_scorer.dat'\ CBetaScorer
[ 95%] Generating ../../stage/share/promod3/loop_data/structure_db.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/loop/data/portable_structure_db.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data/structure_db.dat'\ StructureDB
[ 97%] Generating ../../stage/share/promod3/scoring_data/aa_packing_scorer.dat
[ 98%] Generating ../../stage/share/promod3/scoring_data/reduced_scorer.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_aa_packing_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/aa_packing_scorer.dat'\ AllAtomPackingScorer
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_reduced_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/reduced_scorer.dat'\ ReducedScorer
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
Compound library not available. Some functionality may not work as expected.
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py:633: SyntaxWarning: invalid escape sequence '\.'
  pat = f"ling {cname}\.[A-Z]+([0-9]*)-\([A-Z]+\)-{cname}\.[A-Z]+([0-9]+)"
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target generate_scoring_data_cbeta_scorer.dat
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/DependInfo.cmake "--color="
[ 98%] Built target generate_scoring_data_hbond_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/DependInfo.cmake "--color="
[ 98%] Built target generate_scoring_data_cb_packing_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target generate_scoring_data_aa_packing_scorer.dat
[ 98%] Generating ../../stage/share/promod3/scoring_data/ss_agreement_scorer.dat
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/DependInfo.cmake "--color="
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_ss_agreement_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/ss_agreement_scorer.dat'\ SSAgreementScorer
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target generate_loop_data_ff_lookup_charmm.dat
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/depend
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/DependInfo.cmake "--color="
[ 98%] Generating ../../stage/share/promod3/scoring_data/torsion_scorer.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_torsion_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/torsion_scorer.dat'\ TorsionScorer
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Generating ../../stage/share/promod3/scoring_data/aa_scorer.dat
[ 98%] Built target generate_scoring_data_reduced_scorer.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/convert_binaries.py'\ '/build/reproducible-path/promod3-3.4.2+ds/scoring/data/portable_aa_scorer.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/scoring_data/aa_scorer.dat'\ AllAtomInteractionScorer
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[100%] Generating ../../stage/share/promod3/sidechain_data/bb_dep_lib.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/convert_lib.py'\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/portable_bb_dep_lib.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data/bb_dep_lib.dat'\ BBDepRotamerLib
[100%] Generating ../../stage/share/promod3/sidechain_data/lib.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && sh -c PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/\ /usr/bin/python3\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/convert_lib.py'\ '/build/reproducible-path/promod3-3.4.2+ds/sidechain/data/portable_lib.dat'\ '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data/lib.dat'\ RotamerLib
Compound library not available. Some functionality may not work as expected.
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
Compound library not available. Some functionality may not work as expected.
[100%] Built target generate_loop_data_torsion_sampler_helical.dat
[100%] Built target generate_loop_data_torsion_sampler.dat
Compound library not available. Some functionality may not work as expected.
[100%] Built target generate_loop_data_torsion_sampler_coil.dat
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target generate_loop_data_torsion_sampler_extended.dat
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
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[100%] Built target generate_scoring_data_ss_agreement_scorer.dat
[100%] Built target generate_scoring_data_torsion_scorer.dat
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target generate_sidechain_data_lib.dat
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target generate_scoring_data_aa_scorer.dat
make  -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Nothing to be done for 'scoring/data/CMakeFiles/scoring_data.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target scoring_data
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target generate_sidechain_data_bb_dep_lib.dat
make  -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data.dir/DependInfo.cmake "--color="
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make  -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Nothing to be done for 'sidechain/data/CMakeFiles/sidechain_data.dir/build'.
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[100%] Built target sidechain_data
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target generate_loop_data_frag_db.dat
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target generate_loop_data_structure_db.dat
make  -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/depend
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/build
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[3]: Nothing to be done for 'loop/data/CMakeFiles/loop_data.dir/build'.
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target loop_data
make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds'
dh_auto_test --no-parallel
	cd obj-x86_64-linux-gnu && make -j1 check ARGS\+=--verbose ARGS\+=-j1
make[2]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 check
make[3]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles 94
make  -f CMakeFiles/Makefile2 CMakeFiles/check.dir/all
make[4]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/CMakeFiles/actions.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/CMakeFiles/actions.dir/build.make actions/CMakeFiles/actions.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-model /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-model
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-rawmodel /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-rawmodel
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-help /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-help
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/pm-build-sidechains /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3/pm-build-sidechains
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  0%] Built target actions
make  -f actions/tests/CMakeFiles/test_data_actions.dir/build.make actions/tests/CMakeFiles/test_data_actions.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_data_actions.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/tests/CMakeFiles/test_data_actions.dir/build.make actions/tests/CMakeFiles/test_data_actions.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/tests/data/gly.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data/gly.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/tests/data/seq.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data/seq.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/actions/tests/data/seq_ins.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions/data/seq_ins.fasta
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  0%] Built target test_data_actions
make  -f actions/tests/CMakeFiles/test_actions.py_run.dir/build.make actions/tests/CMakeFiles/test_actions.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_actions.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/tests/CMakeFiles/test_actions.py_run.dir/build.make actions/tests/CMakeFiles/test_actions.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] running checks test_actions.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_actions.py"
Compound library not available. Some functionality may not work as expected.
.
----------------------------------------------------------------------
Ran 1 test in 0.000s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target test_actions.py_run
make  -f core/tests/CMakeFiles/test_data_core.dir/build.make core/tests/CMakeFiles/test_data_core.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_data_core.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/tests/CMakeFiles/test_data_core.dir/build.make core/tests/CMakeFiles/test_data_core.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests//test_helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core//test_helper.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/broken_on_purpose.chemlib /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/broken_on_purpose.chemlib
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn_cut.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2aoh-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2aoh-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut_A.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2aoh-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2aoh-1_cut_B.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.aln /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.aln
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.json /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.json
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/2jlp-1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/2jlp-1.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5d52-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5d52-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut_A.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5d52-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5d52-1_cut_B.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn.hhm
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/1crn_corrupted.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/1crn_corrupted.hhm
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5ua4_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5ua4_B.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/aln_tpl/5ua4_B.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/aln_tpl/5ua4_B.hhm
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/alignment.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/alignment.fas
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake.fas
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_1.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_1.fas
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_2trg.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_2trg.fas
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_3.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_3.fas
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake.fas.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake.fas.gz
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_nel.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_nel.fas
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/tests/data/fasta/1ake_sw.fas /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/data/fasta/1ake_sw.fas
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target test_data_core
make  -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/create_stage.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/src/CMakeFiles/create_stage.dir/build.make core/src/CMakeFiles/create_stage.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/libexec/promod3
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target create_stage
make  -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core_headers.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/src/CMakeFiles/promod3_core_headers.dir/build.make core/src/CMakeFiles/promod3_core_headers.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./check_io.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./check_io.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./cluster.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./cluster.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./dynamic_spatial_organizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./dynamic_spatial_organizer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./export_helper.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./export_helper.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./geom_stems.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./geom_stems.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./message.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./message.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_sink.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_sink.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_data_source.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_data_source.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./portable_binary_serializer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./portable_binary_serializer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./runtime_profiling.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./runtime_profiling.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./superpose.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./superpose.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./enumerator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./enumerator.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tree.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tree.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./tetrahedral_polytope.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./tetrahedral_polytope.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./graph_minimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./graph_minimizer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/src/./eigen_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/core/./eigen_types.hh
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target promod3_core_headers
make  -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/CMakeFiles/config_header.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f config/src/CMakeFiles/config_header.dir/build.make config/src/CMakeFiles/config_header.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/config/src/config.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/config.hh
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  1%] Built target config_header
make  -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/src/CMakeFiles/promod3_core.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/src/CMakeFiles/promod3_core.dir/build.make core/src/CMakeFiles/promod3_core.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'core/src/CMakeFiles/promod3_core.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  4%] Built target promod3_core
make  -f core/tests/CMakeFiles/test_suite_core.dir/build.make core/tests/CMakeFiles/test_suite_core.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_suite_core.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/tests/CMakeFiles/test_suite_core.dir/build.make core/tests/CMakeFiles/test_suite_core.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  4%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_check_io.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_check_io.cc.o -MF CMakeFiles/test_suite_core.dir/test_check_io.cc.o.d -o CMakeFiles/test_suite_core.dir/test_check_io.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_check_io.cc
[  5%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o -MF CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o.d -o CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_portable_binary.cc
[  5%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o -MF CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o.d -o CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_graph_minimizer.cc
[  6%] Building CXX object core/tests/CMakeFiles/test_suite_core.dir/tests.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT core/tests/CMakeFiles/test_suite_core.dir/tests.cc.o -MF CMakeFiles/test_suite_core.dir/tests.cc.o.d -o CMakeFiles/test_suite_core.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/core/tests/tests.cc
[  6%] Linking CXX executable ../../tests/core/test_suite_core
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_core.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_core.dir/link.d CMakeFiles/test_suite_core.dir/test_check_io.cc.o CMakeFiles/test_suite_core.dir/test_portable_binary.cc.o CMakeFiles/test_suite_core.dir/test_graph_minimizer.cc.o CMakeFiles/test_suite_core.dir/tests.cc.o -o ../../tests/core/test_suite_core   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  6%] Built target test_suite_core
make  -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/core_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/pymod/CMakeFiles/core_pymod.dir/build.make core/pymod/CMakeFiles/core_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/__init__.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/helper.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/core/pymod/pm3argparse.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/core/pm3argparse.py
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  6%] Built target core_pymod
make  -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/pymod/CMakeFiles/_core.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/pymod/CMakeFiles/_core.dir/build.make core/pymod/CMakeFiles/_core.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'core/pymod/CMakeFiles/_core.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  8%] Built target _core
make  -f core/tests/CMakeFiles/test_suite_core_run.dir/build.make core/tests/CMakeFiles/test_suite_core_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_suite_core_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/tests/CMakeFiles/test_suite_core_run.dir/build.make core/tests/CMakeFiles/test_suite_core_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  9%] running checks for module core
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core/test_suite_core
Running 4 test cases...

*** No errors detected
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[  9%] Built target test_suite_core_run
make  -f core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build.make core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build.make core/tests/CMakeFiles/test_setcompoundschemlib.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 10%] running checks test_setcompoundschemlib.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_setcompoundschemlib.py"
Compound library not available. Some functionality may not work as expected.
..
----------------------------------------------------------------------
Ran 2 tests in 0.072s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 10%] Built target test_setcompoundschemlib.py_run
make  -f core/tests/CMakeFiles/test_helper.py_run.dir/build.make core/tests/CMakeFiles/test_helper.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_helper.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/tests/CMakeFiles/test_helper.py_run.dir/build.make core/tests/CMakeFiles/test_helper.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] running checks test_helper.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_helper.py"
Compound library not available. Some functionality may not work as expected.
............
----------------------------------------------------------------------
Ran 12 tests in 0.001s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] Built target test_helper.py_run
make  -f core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build.make core/tests/CMakeFiles/test_pm3argparse.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/tests/CMakeFiles/test_pm3argparse.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build.make core/tests/CMakeFiles/test_pm3argparse.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] running checks test_pm3argparse.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/core && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/core/tests/test_pm3argparse.py"
Compound library not available. Some functionality may not work as expected.
..................................................................
----------------------------------------------------------------------
Ran 66 tests in 0.868s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] Built target test_pm3argparse.py_run
make  -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data_dir.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/loop_data_dir.dir/build.make loop/data/CMakeFiles/loop_data_dir.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/loop_data
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] Built target loop_data_dir
make  -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/modelling_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/pymod/CMakeFiles/modelling_pymod.dir/build.make modelling/pymod/CMakeFiles/modelling_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/__init__.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_closegaps.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_closegaps.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_molprobity.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_molprobity.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_pipeline.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_pipeline.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_ring_punches.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_ring_punches.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_denovo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_denovo.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_fragger_handle.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_fragger_handle.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_reconstruct_sidechains.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_reconstruct_sidechains.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_monte_carlo.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_monte_carlo.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_mhandle_helper.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_mhandle_helper.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_alignment_fiddling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_alignment_fiddling.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_raw_model.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_raw_model.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_planar_rings.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_planar_rings.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod/_afdb_modelling.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/modelling/_afdb_modelling.py
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] Built target modelling_pymod
make  -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop_headers.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/src/CMakeFiles/promod3_loop_headers.dir/build.make loop/src/CMakeFiles/promod3_loop_headers.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_env.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_env.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./all_atom_positions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./all_atom_positions.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./amino_acid_atoms.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./amino_acid_atoms.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./backbone.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./backbone.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./bb_trace_param.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./bb_trace_param.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./data_bag.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./data_bag.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_hash_table.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_hash_table.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./dense_map.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./dense_map.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./density_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./density_creator.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./forcefield_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./forcefield_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./frag_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./frag_db.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./fragger.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./fragger.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./hydrogen_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./hydrogen_rule_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./idx_handler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./idx_handler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./loop_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./loop_object_loader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./mm_system_creator.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./mm_system_creator.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./psipred_prediction.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./psipred_prediction.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./stem_geom.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./stem_geom.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./torsion_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./torsion_sampler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./ushort_vec.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./ushort_vec.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_rule_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_rule_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./sidechain_atom_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./sidechain_atom_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/src/./structure_db_custom_types.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/loop/./structure_db_custom_types.hh
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 11%] Built target promod3_loop_headers
make  -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/src/CMakeFiles/promod3_loop.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/src/CMakeFiles/promod3_loop.dir/build.make loop/src/CMakeFiles/promod3_loop.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/src/CMakeFiles/promod3_loop.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 20%] Built target promod3_loop
make  -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/loop_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/pymod/CMakeFiles/loop_pymod.dir/build.make loop/pymod/CMakeFiles/loop_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/loop/__init__.py
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 20%] Built target loop_pymod
make  -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/pymod/CMakeFiles/_loop.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/pymod/CMakeFiles/_loop.dir/build.make loop/pymod/CMakeFiles/_loop.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/pymod/CMakeFiles/_loop.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 25%] Built target _loop
make  -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring_headers.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/src/CMakeFiles/promod3_scoring_headers.dir/build.make scoring/src/CMakeFiles/promod3_scoring_headers.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_score_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./backbone_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./backbone_overall_scorer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scoring_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scoring_object_loader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cb_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cb_packing_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./cbeta_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./cbeta_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./reduced_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./reduced_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./clash_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./density_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./density_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./hbond_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./hbond_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./ss_agreement_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./ss_agreement_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./torsion_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./torsion_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_scoring_function.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_scoring_function.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./pairwise_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./pairwise_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./constraint_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./constraint_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_score_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_score_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_overall_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_overall_scorer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_interaction_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_interaction_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_packing_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_packing_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./all_atom_clash_score.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./all_atom_clash_score.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/src/./scwrl3_energy_functions.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/scoring/./scwrl3_energy_functions.hh
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 25%] Built target promod3_scoring_headers
make  -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/src/CMakeFiles/promod3_scoring.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/src/CMakeFiles/promod3_scoring.dir/build.make scoring/src/CMakeFiles/promod3_scoring.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/src/CMakeFiles/promod3_scoring.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 36%] Built target promod3_scoring
make  -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/scoring_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/pymod/CMakeFiles/scoring_pymod.dir/build.make scoring/pymod/CMakeFiles/scoring_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/scoring/__init__.py
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 36%] Built target scoring_pymod
make  -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/pymod/CMakeFiles/_scoring.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/pymod/CMakeFiles/_scoring.dir/build.make scoring/pymod/CMakeFiles/_scoring.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/pymod/CMakeFiles/_scoring.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 40%] Built target _scoring
make  -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain_headers.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./bb_dep_rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./bb_dep_rotamer_lib.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./disulfid.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./disulfid.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./frame.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./frame.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_graph.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_graph.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring_base.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring_base.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_particle_scoring.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_particle_scoring.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_cruncher.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_cruncher.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_density.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_density.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_group.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_group.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_id.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_id.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_entry.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_entry.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lib_reader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lib_reader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_connector.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_connector.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./sidechain_object_loader.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./sidechain_object_loader.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./rotamer_lookup.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./rotamer_lookup.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl4_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./scwrl3_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./vina_rotamer_constructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./vina_rotamer_constructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/src/./subrotamer_optimizer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/sidechain/./subrotamer_optimizer.hh
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 40%] Built target promod3_sidechain_headers
make  -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/src/CMakeFiles/promod3_sidechain.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/src/CMakeFiles/promod3_sidechain.dir/build.make sidechain/src/CMakeFiles/promod3_sidechain.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'sidechain/src/CMakeFiles/promod3_sidechain.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 51%] Built target promod3_sidechain
make  -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/sidechain_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build.make sidechain/pymod/CMakeFiles/sidechain_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod/__init__.py /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages//promod3/sidechain/__init__.py
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 51%] Built target sidechain_pymod
make  -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/pymod/CMakeFiles/_sidechain.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/pymod/CMakeFiles/_sidechain.dir/build.make sidechain/pymod/CMakeFiles/_sidechain.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'sidechain/pymod/CMakeFiles/_sidechain.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 57%] Built target _sidechain
make  -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling_headers.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/src/CMakeFiles/promod3_modelling_headers.dir/build.make modelling/src/CMakeFiles/promod3_modelling_headers.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./extension_scheme.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./extension_scheme.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./gap_extender.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./gap_extender.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./model.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./model.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./all_atom_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./all_atom_relaxer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./backbone_relaxer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./backbone_relaxer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./ccd.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./ccd.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./kic.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./kic.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./loop_candidate.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./loop_candidate.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_closer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_closer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_cooler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_cooler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_sampler.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_sampler.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./monte_carlo_scorer.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./monte_carlo_scorer.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./rigid_blocks.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./rigid_blocks.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./score_container.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./score_container.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./scoring_weights.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./scoring_weights.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_reconstructor.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_reconstructor.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./sidechain_env_listener.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./sidechain_env_listener.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./motif_finder.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./motif_finder.hh
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./robin_hood.h /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./robin_hood.h
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/src/./afdb.hh /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include/promod3/modelling/./afdb.hh
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 57%] Built target promod3_modelling_headers
make  -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/src/CMakeFiles/promod3_modelling.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/src/CMakeFiles/promod3_modelling.dir/build.make modelling/src/CMakeFiles/promod3_modelling.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'modelling/src/CMakeFiles/promod3_modelling.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 67%] Built target promod3_modelling
make  -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/pymod/CMakeFiles/_modelling.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/pymod/CMakeFiles/_modelling.dir/build.make modelling/pymod/CMakeFiles/_modelling.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'modelling/pymod/CMakeFiles/_modelling.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 73%] Built target _modelling
make  -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init___init__.py_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/init/CMakeFiles/init___init__.py_pymod.dir/build.make core/init/CMakeFiles/init___init__.py_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'core/init/CMakeFiles/init___init__.py_pymod.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 74%] Built target init___init__.py_pymod
make  -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/init_pymod.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/init/CMakeFiles/init_pymod.dir/build.make core/init/CMakeFiles/init_pymod.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'core/init/CMakeFiles/init_pymod.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 74%] Built target init_pymod
make  -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/core/init/CMakeFiles/_init.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f core/init/CMakeFiles/_init.dir/build.make core/init/CMakeFiles/_init.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'core/init/CMakeFiles/_init.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 74%] Built target _init
make  -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_ff_lookup_charmm.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 75%] Built target generate_loop_data_ff_lookup_charmm.dat
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 75%] Built target generate_loop_data_torsion_sampler.dat
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_coil.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 75%] Built target generate_loop_data_torsion_sampler_coil.dat
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_extended.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 76%] Built target generate_loop_data_torsion_sampler_extended.dat
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_torsion_sampler_helical.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 76%] Built target generate_loop_data_torsion_sampler_helical.dat
make  -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_frag_db.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 76%] Built target generate_loop_data_frag_db.dat
make  -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build.make loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/generate_loop_data_structure_db.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 77%] Built target generate_loop_data_structure_db.dat
make  -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/data/CMakeFiles/loop_data.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/data/CMakeFiles/loop_data.dir/build.make loop/data/CMakeFiles/loop_data.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'loop/data/CMakeFiles/loop_data.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 77%] Built target loop_data
make  -f loop/tests/CMakeFiles/test_data_loop.dir/build.make loop/tests/CMakeFiles/test_data_loop.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_data_loop.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/tests/CMakeFiles/test_data_loop.dir/build.make loop/tests/CMakeFiles/test_data_loop.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1A88A.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A.hhm
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1A88A.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1A88A_with_gap.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1A88A_with_gap.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1akyA.horiz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1akyA.horiz
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/1CRN.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/1CRN.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/3DEFA.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/3DEFA.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/4nyk.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/4nyk.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_polar_hisd.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hisd.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_polar_hise.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hise.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_polar_hish.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_polar_hish.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/all_aa_prot_ref.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/all_aa_prot_ref.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/loop/tests/data/CHARMM27.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/data/CHARMM27.dat
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 77%] Built target test_data_loop
make  -f loop/tests/CMakeFiles/test_suite_loop.dir/build.make loop/tests/CMakeFiles/test_suite_loop.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_suite_loop.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f loop/tests/CMakeFiles/test_suite_loop.dir/build.make loop/tests/CMakeFiles/test_suite_loop.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 77%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o -MF CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_all_atom_env.cc
[ 78%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o -MF CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_all_atom_positions.cc
[ 78%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o -MF CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_amino_acid_atoms.cc
[ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_backbone.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_backbone.cc.o -MF CMakeFiles/test_suite_loop.dir/test_backbone.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_backbone.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_backbone.cc
[ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o -MF CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_forcefield.cc
[ 79%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o -MF CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_hydrogens.cc
[ 80%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o -MF CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_idx_handler.cc
[ 80%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o -MF CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_mm_system_creator.cc
[ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o -MF CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_psipred_prediction.cc
[ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o -MF CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_sidechain_construction.cc
[ 81%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o -MF CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_torsion_sampler.cc
[ 82%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o -MF CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o.d -o CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/test_structuredb.cc
[ 82%] Building CXX object loop/tests/CMakeFiles/test_suite_loop.dir/tests.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT loop/tests/CMakeFiles/test_suite_loop.dir/tests.cc.o -MF CMakeFiles/test_suite_loop.dir/tests.cc.o.d -o CMakeFiles/test_suite_loop.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/loop/tests/tests.cc
[ 84%] Linking CXX executable ../../tests/loop/test_suite_loop
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_loop.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_loop.dir/link.d CMakeFiles/test_suite_loop.dir/test_all_atom_env.cc.o CMakeFiles/test_suite_loop.dir/test_all_atom_positions.cc.o CMakeFiles/test_suite_loop.dir/test_amino_acid_atoms.cc.o CMakeFiles/test_suite_loop.dir/test_backbone.cc.o CMakeFiles/test_suite_loop.dir/test_forcefield.cc.o CMakeFiles/test_suite_loop.dir/test_hydrogens.cc.o CMakeFiles/test_suite_loop.dir/test_idx_handler.cc.o CMakeFiles/test_suite_loop.dir/test_mm_system_creator.cc.o CMakeFiles/test_suite_loop.dir/test_psipred_prediction.cc.o CMakeFiles/test_suite_loop.dir/test_sidechain_construction.cc.o CMakeFiles/test_suite_loop.dir/test_torsion_sampler.cc.o CMakeFiles/test_suite_loop.dir/test_structuredb.cc.o CMakeFiles/test_suite_loop.dir/tests.cc.o -o ../../tests/loop/test_suite_loop   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_loop.so.3.4.2 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 84%] Built target test_suite_loop
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/loop/tests/CMakeFiles/test_suite_loop_run.dir/DependInfo.cmake "--color="
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[ 84%] running checks for module loop
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/loop/test_suite_loop
Running 68 test cases...

*** No errors detected
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make  -f scoring/data/CMakeFiles/scoring_data_dir.dir/build.make scoring/data/CMakeFiles/scoring_data_dir.dir/depend
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[ 85%] Built target generate_scoring_data_aa_packing_scorer.dat
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[ 85%] Built target generate_scoring_data_cb_packing_scorer.dat
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[ 86%] Built target generate_scoring_data_cbeta_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_reduced_scorer.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target generate_scoring_data_reduced_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_hbond_scorer.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
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make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target generate_scoring_data_hbond_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_ss_agreement_scorer.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target generate_scoring_data_ss_agreement_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_torsion_scorer.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target generate_scoring_data_torsion_scorer.dat
make  -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build.make scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/data/CMakeFiles/generate_scoring_data_aa_scorer.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target generate_scoring_data_aa_scorer.dat
make  -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/data/CMakeFiles/scoring_data.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/data/CMakeFiles/scoring_data.dir/build.make scoring/data/CMakeFiles/scoring_data.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'scoring/data/CMakeFiles/scoring_data.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target scoring_data
make  -f scoring/tests/CMakeFiles/test_data_scoring.dir/build.make scoring/tests/CMakeFiles/test_data_scoring.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_data_scoring.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/tests/CMakeFiles/test_data_scoring.dir/build.make scoring/tests/CMakeFiles/test_data_scoring.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/data/1CRNA.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data/1CRNA.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/data/3DEFA.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data/3DEFA.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/data/clash_test.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/data/clash_test.pdb
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 87%] Built target test_data_scoring
make  -f scoring/tests/CMakeFiles/test_suite_scoring.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_suite_scoring.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/tests/CMakeFiles/test_suite_scoring.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_backbone_score_base.cc
[ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_backbone_scorer.cc
[ 88%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o -MF CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o.d -o CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_all_atom_scorer.cc
/build/reproducible-path/promod3-3.4.2+ds/scoring/tests/test_all_atom_scorer.cc:73:33: warning: 'promod3::loop::AllAtomPositions scoring::{anonymous}::GenerateTestPos(const String&, uint, uint)' defined but not used [-Wunused-function]
   73 | promod3::loop::AllAtomPositions GenerateTestPos(
      |                                 ^~~~~~~~~~~~~~~
[ 89%] Building CXX object scoring/tests/CMakeFiles/test_suite_scoring.dir/tests.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT scoring/tests/CMakeFiles/test_suite_scoring.dir/tests.cc.o -MF CMakeFiles/test_suite_scoring.dir/tests.cc.o.d -o CMakeFiles/test_suite_scoring.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/scoring/tests/tests.cc
[ 89%] Linking CXX executable ../../tests/scoring/test_suite_scoring
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_scoring.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_scoring.dir/link.d CMakeFiles/test_suite_scoring.dir/test_backbone_score_base.cc.o CMakeFiles/test_suite_scoring.dir/test_backbone_scorer.cc.o CMakeFiles/test_suite_scoring.dir/test_all_atom_scorer.cc.o CMakeFiles/test_suite_scoring.dir/tests.cc.o -o ../../tests/scoring/test_suite_scoring   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 89%] Built target test_suite_scoring
make  -f scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scoring/tests/CMakeFiles/test_suite_scoring_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build.make scoring/tests/CMakeFiles/test_suite_scoring_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 90%] running checks for module scoring
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/scoring/test_suite_scoring
Running 20 test cases...

*** No errors detected
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 90%] Built target test_suite_scoring_run
make  -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data_dir.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/sidechain_data_dir.dir/build.make sidechain/data/CMakeFiles/sidechain_data_dir.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/share/promod3/sidechain_data
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 90%] Built target sidechain_data_dir
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/generate_sidechain_data_bb_dep_lib.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 91%] Built target generate_sidechain_data_bb_dep_lib.dat
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build.make sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/generate_sidechain_data_lib.dat.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 91%] Built target generate_sidechain_data_lib.dat
make  -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/data/CMakeFiles/sidechain_data.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/data/CMakeFiles/sidechain_data.dir/build.make sidechain/data/CMakeFiles/sidechain_data.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'sidechain/data/CMakeFiles/sidechain_data.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 91%] Built target sidechain_data
make  -f sidechain/tests/CMakeFiles/test_data_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_data_sidechain.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_data_sidechain.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/tests/CMakeFiles/test_data_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_data_sidechain.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/data/all_sc.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain/data/all_sc.pdb
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 91%] Built target test_data_sidechain
make  -f sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_suite_sidechain.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 91%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o -MF CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/test_frame_construction.cc
[ 92%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o -MF CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/test_rotamers.cc
[ 92%] Building CXX object sidechain/tests/CMakeFiles/test_suite_sidechain.dir/tests.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT sidechain/tests/CMakeFiles/test_suite_sidechain.dir/tests.cc.o -MF CMakeFiles/test_suite_sidechain.dir/tests.cc.o.d -o CMakeFiles/test_suite_sidechain.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests/tests.cc
[ 93%] Linking CXX executable ../../tests/sidechain/test_suite_sidechain
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_sidechain.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_sidechain.dir/link.d CMakeFiles/test_suite_sidechain.dir/test_frame_construction.cc.o CMakeFiles/test_suite_sidechain.dir/test_rotamers.cc.o CMakeFiles/test_suite_sidechain.dir/tests.cc.o -o ../../tests/sidechain/test_suite_sidechain   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 93%] Built target test_suite_sidechain
make  -f sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build.make sidechain/tests/CMakeFiles/test_suite_sidechain_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 93%] running checks for module sidechain
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/sidechain/test_suite_sidechain
Running 4 test cases...

*** No errors detected
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 93%] Built target test_suite_sidechain_run
make  -f modelling/tests/CMakeFiles/test_data_modelling.dir/build.make modelling/tests/CMakeFiles/test_data_modelling.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_data_modelling.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_data_modelling.dir/build.make modelling/tests/CMakeFiles/test_data_modelling.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1cjx-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1cjx-1.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1cjx-1.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1cjx-1.pdb.gz
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1CRN.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1CRN.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_build.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_build.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_cut.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_final.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_final.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_rec.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_rec.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_sc.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_sc.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1crn_sc_test.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1crn_sc_test.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1CRNA.hhm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1CRNA.hhm
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1eye.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1eye_rec.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye_rec.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1eye_sc_test.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1eye_sc_test.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1ITX-A-11_sidechain.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1ITX-A-11_sidechain.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1K5C-A-16_clash.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1K5C-A-16_clash.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/1mcg.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/1mcg.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2aoh-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2aoh-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut_A.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2aoh-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2aoh-1_cut_B.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2dbs.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2dbs.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2jlp-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2jlp-1.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2jlp-1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2jlp-1.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2xim-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2xim-1.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/2xim-1.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/2xim-1.pdb.gz
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/3b08-3.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/3b08-3.pdb.gz
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/3b08-3.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/3b08-3.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4nyk.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4nyk.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4R6K-A-13_sidechain.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4R6K-A-13_sidechain.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4ksl-1.pdb.gz /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4ksl-1.pdb.gz
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/4ksl-1.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/4ksl-1.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1_cut.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1_cut_A.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut_A.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/5d52-1_cut_B.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/5d52-1_cut_B.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/CA-3cm91E.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/CA-3cm91E.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/CA-3cm91E.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/CA-3cm91E.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/cbeta.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/cbeta.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/cbeta.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/cbeta.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/del.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/del.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/ff_NAD.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/ff_NAD.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly_on_top.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_on_top.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly_almost_on_top.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_almost_on_top.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/gly_shifted_nter.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/gly_shifted_nter.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/hetero-punched.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/hetero-punched.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/ins.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/ins.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/modelCApartial-5tgl1A.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/modelCApartial-5tgl1A.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/neighbor-punched.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/neighbor-punched.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/port_frag_db.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/port_frag_db.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/port_str_db.dat /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/port_str_db.dat
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/sep.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/sep.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/sep.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/sep.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/seq.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/seq.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/smtl2bl4.1.pdb /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/smtl2bl4.1.pdb
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/ter.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/ter.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/terminal_deletion_aln.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/terminal_deletion_aln.fasta
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E make_directory /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/data/double_gap_aln.fasta /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/data/double_gap_aln.fasta
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 93%] Built target test_data_modelling
make  -f modelling/tests/CMakeFiles/test_suite_modelling.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling.dir/depend
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cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_suite_modelling.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_suite_modelling.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 94%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_loop_candidates.cc
[ 94%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_loop_closing.cc
[ 95%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o -MF CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o.d -o CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_sidechain_reconstructor.cc
[ 95%] Building CXX object modelling/tests/CMakeFiles/test_suite_modelling.dir/tests.cc.o
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_UNIT_TEST_FRAMEWORK_DYN_LINK -DBOOST_UNIT_TEST_FRAMEWORK_NO_LIB -I/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/include -I/usr/include/eigen3 -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -MD -MT modelling/tests/CMakeFiles/test_suite_modelling.dir/tests.cc.o -MF CMakeFiles/test_suite_modelling.dir/tests.cc.o.d -o CMakeFiles/test_suite_modelling.dir/tests.cc.o -c /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/tests.cc
[ 95%] Linking CXX executable ../../tests/modelling/test_suite_modelling
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_suite_modelling.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/promod3-3.4.2+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -std=c++11 -Wno-attributes -O3 -DNDEBUG -fno-strict-aliasing -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/test_suite_modelling.dir/link.d CMakeFiles/test_suite_modelling.dir/test_loop_candidates.cc.o CMakeFiles/test_suite_modelling.dir/test_loop_closing.cc.o CMakeFiles/test_suite_modelling.dir/test_sidechain_reconstructor.cc.o CMakeFiles/test_suite_modelling.dir/tests.cc.o -o ../../tests/modelling/test_suite_modelling   -L/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64  -Wl,-rpath,/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64 /usr/lib/x86_64-linux-gnu/libboost_unit_test_framework.so.1.83.0 ../../stage/lib64/libpromod3_modelling.so.3.4.2 ../../stage/lib64/libpromod3_scoring.so.3.4.2 ../../stage/lib64/libpromod3_sidechain.so.3.4.2 ../../stage/lib64/libpromod3_loop.so.3.4.2 ../../stage/lib64/libpromod3_core.so.3.4.2 /usr/lib/x86_64-linux-gnu/libost_io.so /usr/lib/x86_64-linux-gnu/libost_mol.so /usr/lib/x86_64-linux-gnu/libost_seq.so /usr/lib/x86_64-linux-gnu/libost_seq_alg.so /usr/lib/x86_64-linux-gnu/libost_mol_alg.so /usr/lib/x86_64-linux-gnu/libost_conop.so /usr/lib/x86_64-linux-gnu/libost_img.so /usr/lib/x86_64-linux-gnu/libost_mol_mm.so /usr/lib/x86_64-linux-gnu/libost_base.so /usr/lib/x86_64-linux-gnu/libost_geom.so /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 95%] Built target test_suite_modelling
make  -f modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_suite_modelling_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build.make modelling/tests/CMakeFiles/test_suite_modelling_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 96%] running checks for module modelling
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && PROMOD3_ROOT=/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling/test_suite_modelling
Running 7 test cases...

*** No errors detected
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 96%] Built target test_suite_modelling_run
make  -f modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build.make modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build.make modelling/tests/CMakeFiles/test_close_gaps.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 96%] running checks test_close_gaps.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_close_gaps.py"
Compound library not available. Some functionality may not work as expected.
.................................
----------------------------------------------------------------------
Ran 33 tests in 17.719s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 96%] Built target test_close_gaps.py_run
make  -f modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build.make modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build.make modelling/tests/CMakeFiles/test_gap_extension.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 96%] running checks test_gap_extension.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_gap_extension.py"
Compound library not available. Some functionality may not work as expected.
......
----------------------------------------------------------------------
Ran 6 tests in 0.011s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 96%] Built target test_gap_extension.py_run
make  -f modelling/tests/CMakeFiles/test_modelling.py_run.dir/build.make modelling/tests/CMakeFiles/test_modelling.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_modelling.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_modelling.py_run.dir/build.make modelling/tests/CMakeFiles/test_modelling.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 97%] running checks test_modelling.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_modelling.py"
Compound library not available. Some functionality may not work as expected.
..............Alignment-structure mismatch at pos 0 in chain A, alignment is 'X' structure residue is 'S'. Ok for modified residue SEP.
...residue A.GLY8 has conflicting atom CA - skipping atom.
residue A.GLY8 is missing atoms CA
........
----------------------------------------------------------------------
Ran 25 tests in 0.059s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 97%] Built target test_modelling.py_run
make  -f modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build.make modelling/tests/CMakeFiles/test_pipeline.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_pipeline.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build.make modelling/tests/CMakeFiles/test_pipeline.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 97%] running checks test_pipeline.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_pipeline.py"
Compound library not available. Some functionality may not work as expected.
Switched to slower reference platform of OpenMM!
...............
----------------------------------------------------------------------
Ran 15 tests in 27.188s

OK
OpenMM CPU platform not available. Skipping almost_on_top check.
phenix.molprobity is missing. Please install it and make it available in your PATH to execute test testMolProbity.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 97%] Built target test_pipeline.py_run
make  -f modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build.make modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build.make modelling/tests/CMakeFiles/test_ring_punches.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 97%] running checks test_ring_punches.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_ring_punches.py"
Compound library not available. Some functionality may not work as expected.
..
----------------------------------------------------------------------
Ran 2 tests in 0.067s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 97%] Built target test_ring_punches.py_run
make  -f modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build.make modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build.make modelling/tests/CMakeFiles/test_sidechain_reconstruction.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] running checks test_sidechain_reconstruction.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_sidechain_reconstruction.py"
Compound library not available. Some functionality may not work as expected.
..
----------------------------------------------------------------------
Ran 2 tests in 1.552s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target test_sidechain_reconstruction.py_run
make  -f modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build.make modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build.make modelling/tests/CMakeFiles/test_alignment_fiddling.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] running checks test_alignment_fiddling.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/modelling && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/modelling/tests/test_alignment_fiddling.py"
Compound library not available. Some functionality may not work as expected.
..
----------------------------------------------------------------------
Ran 2 tests in 0.006s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target test_alignment_fiddling.py_run
make  -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/subst_pm.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scripts/CMakeFiles/subst_pm.dir/build.make scripts/CMakeFiles/subst_pm.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -DINPUT_FILE=/build/reproducible-path/promod3-3.4.2+ds/scripts/pm.in -DOUT_FILE=pm -DOST_ROOT="/usr" -DLIBDIR=lib64 -DLIBEXECPATH=libexec/promod3 -DPYTHON_MODULE_PATH=python3.13/site-packages/ -DOST_PYMOD_PATH=/usr/lib/python3/dist-packages -DPython_EXECUTABLE=/usr/bin/python3 -P /build/reproducible-path/promod3-3.4.2+ds/cmake_support/substitute.cmake
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target subst_pm
make  -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/CMakeFiles/promod3_scripts.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f scripts/CMakeFiles/promod3_scripts.dir/build.make scripts/CMakeFiles/promod3_scripts.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts && /usr/bin/cmake -E copy_if_different /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/scripts/pm /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/bin/pm
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target promod3_scripts
make  -f actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-model.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_build-model.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-model.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] running checks test_action_build-model.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_action_build-model.py"
Compound library not available. Some functionality may not work as expected.
...
----------------------------------------------------------------------
Ran 3 tests in 2.987s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target test_action_build-model.py_run
make  -f actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build.make actions/tests/CMakeFiles/test_action_build-rawmodel.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] running checks test_action_build-rawmodel.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_action_build-rawmodel.py"
Compound library not available. Some functionality may not work as expected.
...
----------------------------------------------------------------------
Ran 3 tests in 1.071s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[ 98%] Built target test_action_build-rawmodel.py_run
make  -f actions/tests/CMakeFiles/test_action_help.py_run.dir/build.make actions/tests/CMakeFiles/test_action_help.py_run.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/actions/tests/CMakeFiles/test_action_help.py_run.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f actions/tests/CMakeFiles/test_action_help.py_run.dir/build.make actions/tests/CMakeFiles/test_action_help.py_run.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] running checks test_action_help.py
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/tests/actions && sh -c "PYTHONPATH=/usr/lib/python3/dist-packages:/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/stage/lib64/python3.13/site-packages/  /usr/bin/python3 /build/reproducible-path/promod3-3.4.2+ds/actions/tests/test_action_help.py"
Compound library not available. Some functionality may not work as expected.
..
----------------------------------------------------------------------
Ran 2 tests in 0.026s

OK
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target test_action_help.py_run
make  -f CMakeFiles/codetest.dir/build.make CMakeFiles/codetest.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles/codetest.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f CMakeFiles/codetest.dir/build.make CMakeFiles/codetest.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'CMakeFiles/codetest.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target codetest
make  -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/depend
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
cd /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles/check.dir/DependInfo.cmake "--color="
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make  -f CMakeFiles/check.dir/build.make CMakeFiles/check.dir/build
make[5]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[5]: Nothing to be done for 'CMakeFiles/check.dir/build'.
make[5]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
[100%] Built target check
make[4]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu/CMakeFiles 0
make[3]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds'
   create-stamp debian/debhelper-build-stamp
   dh_prep
   dh_auto_install
	cd obj-x86_64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/promod3-3.4.2\+ds/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
/usr/bin/cmake -S/build/reproducible-path/promod3-3.4.2+ds -B/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/config.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/__init__.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4.2
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so.3.4.2" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_core.so
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./check_io.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./cluster.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./dynamic_spatial_organizer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./export_helper.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./geom_base.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./geom_stems.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./message.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./portable_binary_data_sink.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./portable_binary_data_source.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./portable_binary_serializer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./runtime_profiling.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./superpose.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./enumerator.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./graph.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./tree.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./tetrahedral_polytope.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./graph_minimizer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/core/./eigen_types.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/_core.so
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/_core.so" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/__init__.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/helper.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/core/pm3argparse.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4.2
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so.3.4.2" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_loop.so
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./all_atom_env.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./all_atom_positions.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./amino_acid_atoms.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./backbone.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./bb_trace_param.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./data_bag.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./dense_hash_table.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./dense_map.hh
-- Up-to-date: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./dense_map.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./density_creator.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./forcefield_lookup.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./frag_db.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./fragger.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./hydrogen_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./hydrogen_rule_lookup.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./idx_handler.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./loop_object_loader.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./mm_system_creator.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./psipred_prediction.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./stem_geom.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./structure_db.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./torsion_sampler.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./ushort_vec.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./sidechain_atom_rule_lookup.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./sidechain_atom_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/loop/./structure_db_custom_types.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/loop/_loop.so
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/loop/_loop.so" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/loop/__init__.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_coil.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_extended.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/torsion_sampler_helical.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/frag_db.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/structure_db.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/loop_data/ff_lookup_charmm.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4.2
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so.3.4.2" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_scoring.so
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./backbone_score_base.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./backbone_overall_scorer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./scoring_object_loader.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./cbeta_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./cb_packing_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./cbeta_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./reduced_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./reduced_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./clash_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./clash_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./density_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./hbond_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./hbond_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./ss_agreement_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./ss_agreement_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./torsion_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./pairwise_scoring_function.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./pairwise_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./constraint_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_score_base.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_overall_scorer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_interaction_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_interaction_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_packing_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./all_atom_clash_score.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/scoring/./scwrl3_energy_functions.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/scoring/_scoring.so
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/scoring/_scoring.so" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/scoring/__init__.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/cb_packing_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/cbeta_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/reduced_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/hbond_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/ss_agreement_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/torsion_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/aa_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/scoring_data/aa_packing_scorer.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4.2
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so.3.4.2" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_sidechain.so
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./bb_dep_rotamer_lib.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./disulfid.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./frame.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_graph.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./particle.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./particle_scoring_base.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./particle_scoring.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl4_particle_scoring.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl3_particle_scoring.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./vina_particle_scoring.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_cruncher.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_density.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_group.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_id.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib_entry.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lib_reader.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./sidechain_connector.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./sidechain_object_loader.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./rotamer_lookup.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl4_rotamer_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./scwrl3_rotamer_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./vina_rotamer_constructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/sidechain/./subrotamer_optimizer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/sidechain/_sidechain.so" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/sidechain/__init__.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/sidechain_data/lib.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/share/promod3/sidechain_data/bb_dep_lib.dat
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4.2
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so.3.4.2" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/libpromod3_modelling.so
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./extension_scheme.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./gap.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./gap_extender.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./model.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./all_atom_relaxer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./backbone_relaxer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./ccd.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./kic.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./loop_candidate.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_closer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_cooler.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_sampler.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./monte_carlo_scorer.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./rigid_blocks.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./score_container.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./scoring_weights.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./sidechain_reconstructor.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./sidechain_env_listener.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./motif_finder.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./robin_hood.h
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/include/promod3/modelling/./afdb.hh
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_modelling.so
-- Set non-toolchain portion of runtime path of "/build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_modelling.so" to ""
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/__init__.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_closegaps.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_molprobity.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_pipeline.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_ring_punches.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_denovo.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_fragger_handle.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_reconstruct_sidechains.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_monte_carlo.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_mhandle_helper.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_alignment_fiddling.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_raw_model.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_planar_rings.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/lib64/python3.13/site-packages/promod3/modelling/_afdb_modelling.py
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/bin/pm
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-build-model
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-build-rawmodel
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-help
-- Installing: /build/reproducible-path/promod3-3.4.2+ds/debian/tmp/usr/libexec/promod3/pm-build-sidechains
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds/obj-x86_64-linux-gnu'
   debian/rules execute_after_dh_auto_install
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds'
mv debian/tmp/usr/bin/pm debian/tmp/usr/bin/promod # See debian/README.Debian
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds'
   debian/rules override_dh_install-arch
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds'
dh_install
for PKG in core loop modelling scoring sidechain; do \
	dh_install -p libpromod3-${PKG}-dev usr/include/promod3/${PKG}; \
	dh_install -p libpromod3-${PKG}-dev usr/lib64/libpromod3_${PKG}.so   usr/lib/x86_64-linux-gnu; \
	dh_install -p libpromod3-${PKG}3.4  usr/lib64/libpromod3_${PKG}.so.* usr/lib/x86_64-linux-gnu; \
done
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds'
   debian/rules override_dh_install-indep
make[1]: Entering directory '/build/reproducible-path/promod3-3.4.2+ds'
dh_install
rm -rf debian/tmp/usr/include/promod3 debian/tmp/usr/lib64
make[1]: Leaving directory '/build/reproducible-path/promod3-3.4.2+ds'
   dh_installdocs
   dh_installchangelogs
   dh_python3
I: dh_python3 fs:421: renaming _modelling.so to _modelling.cpython-313-x86_64-linux-gnu.so
I: dh_python3 fs:421: renaming _core.so to _core.cpython-313-x86_64-linux-gnu.so
I: dh_python3 fs:421: renaming _scoring.so to _scoring.cpython-313-x86_64-linux-gnu.so
I: dh_python3 fs:421: renaming _loop.so to _loop.cpython-313-x86_64-linux-gnu.so
I: dh_python3 fs:421: renaming _sidechain.so to _sidechain.cpython-313-x86_64-linux-gnu.so
   dh_perl
   dh_link
   dh_strip_nondeterminism
   dh_compress
   dh_fixperms
   dh_missing
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
   dh_installdeb
   dh_gencontrol
dpkg-gencontrol: warning: Depends field of package promod3: substitution variable ${python3:Depends} used, but is not defined
   dh_md5sums
   dh_builddeb
dpkg-deb: building package 'libpromod3-core3.4-dbgsym' in '../libpromod3-core3.4-dbgsym_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-modelling3.4-dbgsym' in '../libpromod3-modelling3.4-dbgsym_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-loop3.4' in '../libpromod3-loop3.4_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-core-dev' in '../libpromod3-core-dev_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'promod3-data' in '../promod3-data_3.4.2+ds-1_all.deb'.
dpkg-deb: building package 'libpromod3-sidechain3.4-dbgsym' in '../libpromod3-sidechain3.4-dbgsym_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-modelling-dev' in '../libpromod3-modelling-dev_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-sidechain-dev' in '../libpromod3-sidechain-dev_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-scoring3.4' in '../libpromod3-scoring3.4_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'python3-promod3-dbgsym' in '../python3-promod3-dbgsym_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-core3.4' in '../libpromod3-core3.4_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-modelling3.4' in '../libpromod3-modelling3.4_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-sidechain3.4' in '../libpromod3-sidechain3.4_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-scoring3.4-dbgsym' in '../libpromod3-scoring3.4-dbgsym_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-loop3.4-dbgsym' in '../libpromod3-loop3.4-dbgsym_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'libpromod3-loop-dev' in '../libpromod3-loop-dev_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'promod3' in '../promod3_3.4.2+ds-1_all.deb'.
dpkg-deb: building package 'libpromod3-scoring-dev' in '../libpromod3-scoring-dev_3.4.2+ds-1_amd64.deb'.
dpkg-deb: building package 'python3-promod3' in '../python3-promod3_3.4.2+ds-1_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../promod3_3.4.2+ds-1_amd64.buildinfo
 dpkg-genchanges --build=binary -O../promod3_3.4.2+ds-1_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/3287521 and its subdirectories
I: Current time: Sun Apr 13 20:27:29 -12 2025
I: pbuilder-time-stamp: 1744619249