I: pbuilder: network access will be disabled during build I: Current time: Fri May 8 13:57:45 -12 2026 I: pbuilder-time-stamp: 1778291865 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4136814/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='d86ced09e1144a6cab75fd25272c51b9' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4136814' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IOGWeHYW/pbuilderrc_9kdY --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IOGWeHYW/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4136814/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 33.5 MB of archives. After unpacking 121 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 googletest all 1.16.0-1 [517 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 62 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libedlib1 amd64 1.2.7-6+b3 [18.1 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libedlib-dev amd64 1.2.7-6+b3 [23.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 71 http://deb.debian.org/debian trixie/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 33.5 MB in 4s (8260 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.6-1_all.deb ... Unpacking cmake-data (3.31.6-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../18-libxml2_2.12.7+dfsg+really2.9.14-0.4_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package libarchive13t64:amd64. Preparing to unpack .../19-libarchive13t64_3.7.4-1.1_amd64.deb ... Unpacking libarchive13t64:amd64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../20-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../21-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../22-libcom-err2_1.47.2-1+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-1+b1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../23-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../24-libkeyutils1_1.6.3-4_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../25-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../26-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../27-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../28-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../29-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../30-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../31-libldap2_2.6.9+dfsg-2_amd64.deb ... Unpacking libldap2:amd64 (2.6.9+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../32-libnghttp2-14_1.64.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../33-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../34-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../35-libffi8_3.4.7-1_amd64.deb ... Unpacking libffi8:amd64 (3.4.7-1) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../36-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../37-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../38-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../40-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../41-libcurl4t64_8.13.0~rc3-1_amd64.deb ... Unpacking libcurl4t64:amd64 (8.13.0~rc3-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../42-libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package libjsoncpp26:amd64. Preparing to unpack .../43-libjsoncpp26_1.9.6-3_amd64.deb ... Unpacking libjsoncpp26:amd64 (1.9.6-3) ... Selecting previously unselected package librhash1:amd64. Preparing to unpack .../44-librhash1_1.4.5-1_amd64.deb ... Unpacking librhash1:amd64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:amd64. Preparing to unpack .../45-libuv1t64_1.50.0-2_amd64.deb ... Unpacking libuv1t64:amd64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../46-cmake_3.31.6-1_amd64.deb ... Unpacking cmake (3.31.6-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../47-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../48-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../49-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../50-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../51-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../52-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../53-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../54-dwz_0.15-1+b1_amd64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../55-gettext_0.23.1-1_amd64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../56-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../57-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../58-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package googletest. Preparing to unpack .../59-googletest_1.16.0-1_all.deb ... Unpacking googletest (1.16.0-1) ... Selecting previously unselected package libbiosoup-dev. Preparing to unpack .../60-libbiosoup-dev_0.11.0-2_all.deb ... Unpacking libbiosoup-dev (0.11.0-2) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../61-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libbioparser-dev. Preparing to unpack .../62-libbioparser-dev_3.1.0-1_all.deb ... Unpacking libbioparser-dev (3.1.0-1) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../63-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... Selecting previously unselected package libcereal-dev. Preparing to unpack .../64-libcereal-dev_1.3.2+dfsg-5_amd64.deb ... Unpacking libcereal-dev (1.3.2+dfsg-5) ... Selecting previously unselected package libedlib1:amd64. Preparing to unpack .../65-libedlib1_1.2.7-6+b3_amd64.deb ... Unpacking libedlib1:amd64 (1.2.7-6+b3) ... Selecting previously unselected package libedlib-dev:amd64. Preparing to unpack .../66-libedlib-dev_1.2.7-6+b3_amd64.deb ... Unpacking libedlib-dev:amd64 (1.2.7-6+b3) ... Selecting previously unselected package libgtest-dev:amd64. Preparing to unpack .../67-libgtest-dev_1.16.0-1_amd64.deb ... Unpacking libgtest-dev:amd64 (1.16.0-1) ... Selecting previously unselected package libspoa7.0.0:amd64. Preparing to unpack .../68-libspoa7.0.0_4.1.4-2+b1_amd64.deb ... Unpacking libspoa7.0.0:amd64 (4.1.4-2+b1) ... Selecting previously unselected package libspoa-dev:amd64. Preparing to unpack .../69-libspoa-dev_4.1.4-2+b1_amd64.deb ... Unpacking libspoa-dev:amd64 (4.1.4-2+b1) ... Selecting previously unselected package libthread-pool-dev. Preparing to unpack .../70-libthread-pool-dev_4.0.0-2_amd64.deb ... Unpacking libthread-pool-dev (4.0.0-2) ... Selecting previously unselected package rampler. Preparing to unpack .../71-rampler_2.1.1-1_amd64.deb ... Unpacking rampler (2.1.1-1) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libkeyutils1:amd64 (1.6.3-4) ... Setting up bsdextrautils (2.40.4-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libuv1t64:amd64 (1.50.0-2) ... Setting up libmagic1t64:amd64 (1:5.45-3+b1) ... Setting up libnghttp2-14:amd64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up libcom-err2:amd64 (1.47.2-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20240727.1) ... Setting up rampler (2.1.1-1) ... Setting up libjsoncpp26:amd64 (1.9.6-3) ... Setting up libproc2-0:amd64 (2:4.0.4-7) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libthread-pool-dev (4.0.0-2) ... Setting up libspoa7.0.0:amd64 (4.1.4-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libedlib1:amd64 (1.2.7-6+b3) ... Setting up libffi8:amd64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libbioparser-dev (3.1.0-1) ... Setting up libuchardet0:amd64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up cmake-data (3.31.6-1) ... Setting up librhash1:amd64 (1.4.5-1) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:amd64 (2.6.9+dfsg-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:amd64 (1.16.0-1) ... Setting up libtool (2.5.4-4) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libedlib-dev:amd64 (1.2.7-6+b3) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:amd64 (3.7.4-1.1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libspoa-dev:amd64 (4.1.4-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:amd64 (8.13.0~rc3-1) ... Setting up debhelper (13.24.2) ... Setting up cmake (3.31.6-1) ... Processing triggers for libc-bin (2.41-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 20%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/x86_64-linux-gnu/libgtest_main.a /usr/lib/x86_64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (12 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000519 s [racon::Polisher::initialize] loaded sequences 0.031004 s [racon::Polisher::initialize] loaded overlaps 0.000327 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.020309 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.030041 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039260 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048310 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058435 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.068161 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091728 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.103326 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112801 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.121122 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132683 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142677 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153698 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.159296 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.170264 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.193447 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.200488 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.209583 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.222203 s [racon::Polisher::initialize] aligning overlaps [====================] 0.229758 s [racon::Polisher::initialize] transformed data into windows 0.001578 s [racon::Polisher::polish] generating consensus [=> ] 0.018039 s [racon::Polisher::polish] generating consensus [==> ] 0.033553 s [racon::Polisher::polish] generating consensus [===> ] 0.046593 s [racon::Polisher::polish] generating consensus [====> ] 0.058169 s [racon::Polisher::polish] generating consensus [=====> ] 0.065637 s [racon::Polisher::polish] generating consensus [======> ] 0.082538 s [racon::Polisher::polish] generating consensus [=======> ] 0.090175 s [racon::Polisher::polish] generating consensus [========> ] 0.098983 s [racon::Polisher::polish] generating consensus [=========> ] 0.109968 s [racon::Polisher::polish] generating consensus [==========> ] 0.122101 s [racon::Polisher::polish] generating consensus [===========> ] 0.142239 s [racon::Polisher::polish] generating consensus [============> ] 0.167043 s [racon::Polisher::polish] generating consensus [=============> ] 0.201154 s [racon::Polisher::polish] generating consensus [==============> ] 0.232932 s [racon::Polisher::polish] generating consensus [===============> ] 0.257018 s [racon::Polisher::polish] generating consensus [================> ] 0.273773 s [racon::Polisher::polish] generating consensus [=================> ] 0.296129 s [racon::Polisher::polish] generating consensus [==================> ] 0.308694 s [racon::Polisher::polish] generating consensus [===================>] 0.326079 s [racon::Polisher::polish] generating consensus [====================] 0.390588 s [racon::Polisher::] total = 0.666426 s [ OK ] RaconPolishingTest.ConsensusWithQualities (678 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000384 s [racon::Polisher::initialize] loaded sequences 0.012300 s [racon::Polisher::initialize] loaded overlaps 0.000248 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.017049 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.025914 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.037819 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046245 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057046 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.066736 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.090189 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.101873 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.111323 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.119646 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.131255 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.141236 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.152185 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.157637 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.165160 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.181255 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.186929 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.195835 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.208180 s [racon::Polisher::initialize] aligning overlaps [====================] 0.222295 s [racon::Polisher::initialize] transformed data into windows 0.000340 s [racon::Polisher::polish] generating consensus [=> ] 0.020323 s [racon::Polisher::polish] generating consensus [==> ] 0.039057 s [racon::Polisher::polish] generating consensus [===> ] 0.058231 s [racon::Polisher::polish] generating consensus [====> ] 0.073984 s [racon::Polisher::polish] generating consensus [=====> ] 0.084315 s [racon::Polisher::polish] generating consensus [======> ] 0.093856 s [racon::Polisher::polish] generating consensus [=======> ] 0.105902 s [racon::Polisher::polish] generating consensus [========> ] 0.116807 s [racon::Polisher::polish] generating consensus [=========> ] 0.128810 s [racon::Polisher::polish] generating consensus [==========> ] 0.146753 s [racon::Polisher::polish] generating consensus [===========> ] 0.171518 s [racon::Polisher::polish] generating consensus [============> ] 0.230751 s [racon::Polisher::polish] generating consensus [=============> ] 0.273806 s [racon::Polisher::polish] generating consensus [==============> ] 0.304803 s [racon::Polisher::polish] generating consensus [===============> ] 0.337381 s [racon::Polisher::polish] generating consensus [================> ] 0.362143 s [racon::Polisher::polish] generating consensus [=================> ] 0.381549 s [racon::Polisher::polish] generating consensus [==================> ] 0.396692 s [racon::Polisher::polish] generating consensus [===================>] 0.417853 s [racon::Polisher::polish] generating consensus [====================] 0.529236 s [racon::Polisher::] total = 0.775778 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (786 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000380 s [racon::Polisher::initialize] loaded sequences 0.028994 s [racon::Polisher::initialize] loaded overlaps 0.017105 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.002536 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002644 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002727 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002844 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002947 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002964 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003079 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003252 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003324 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003429 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003537 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003636 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003705 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003826 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003933 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004075 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004141 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004154 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004220 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004233 s [racon::Polisher::initialize] transformed data into windows 0.001522 s [racon::Polisher::polish] generating consensus [=> ] 0.018583 s [racon::Polisher::polish] generating consensus [==> ] 0.033984 s [racon::Polisher::polish] generating consensus [===> ] 0.047457 s [racon::Polisher::polish] generating consensus [====> ] 0.058537 s [racon::Polisher::polish] generating consensus [=====> ] 0.066388 s [racon::Polisher::polish] generating consensus [======> ] 0.073933 s [racon::Polisher::polish] generating consensus [=======> ] 0.081659 s [racon::Polisher::polish] generating consensus [========> ] 0.090189 s [racon::Polisher::polish] generating consensus [=========> ] 0.099828 s [racon::Polisher::polish] generating consensus [==========> ] 0.113226 s [racon::Polisher::polish] generating consensus [===========> ] 0.132010 s [racon::Polisher::polish] generating consensus [============> ] 0.155504 s [racon::Polisher::polish] generating consensus [=============> ] 0.188085 s [racon::Polisher::polish] generating consensus [==============> ] 0.220919 s [racon::Polisher::polish] generating consensus [===============> ] 0.250762 s [racon::Polisher::polish] generating consensus [================> ] 0.270045 s [racon::Polisher::polish] generating consensus [=================> ] 0.295389 s [racon::Polisher::polish] generating consensus [==================> ] 0.309696 s [racon::Polisher::polish] generating consensus [===================>] 0.322809 s [racon::Polisher::polish] generating consensus [====================] 0.386253 s [racon::Polisher::] total = 0.450410 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (459 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000378 s [racon::Polisher::initialize] loaded sequences 0.012212 s [racon::Polisher::initialize] loaded overlaps 0.016702 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.001848 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.001938 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002051 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002117 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002184 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002262 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002391 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002469 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002550 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002625 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002736 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.002841 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.002938 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.002990 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003114 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003348 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003363 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003418 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003519 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003618 s [racon::Polisher::initialize] transformed data into windows 0.000443 s [racon::Polisher::polish] generating consensus [=> ] 0.018180 s [racon::Polisher::polish] generating consensus [==> ] 0.036662 s [racon::Polisher::polish] generating consensus [===> ] 0.054486 s [racon::Polisher::polish] generating consensus [====> ] 0.069146 s [racon::Polisher::polish] generating consensus [=====> ] 0.077964 s [racon::Polisher::polish] generating consensus [======> ] 0.085153 s [racon::Polisher::polish] generating consensus [=======> ] 0.095488 s [racon::Polisher::polish] generating consensus [========> ] 0.107164 s [racon::Polisher::polish] generating consensus [=========> ] 0.118884 s [racon::Polisher::polish] generating consensus [==========> ] 0.138003 s [racon::Polisher::polish] generating consensus [===========> ] 0.161364 s [racon::Polisher::polish] generating consensus [============> ] 0.189692 s [racon::Polisher::polish] generating consensus [=============> ] 0.232619 s [racon::Polisher::polish] generating consensus [==============> ] 0.266182 s [racon::Polisher::polish] generating consensus [===============> ] 0.300291 s [racon::Polisher::polish] generating consensus [================> ] 0.331231 s [racon::Polisher::polish] generating consensus [=================> ] 0.363395 s [racon::Polisher::polish] generating consensus [==================> ] 0.378802 s [racon::Polisher::polish] generating consensus [===================>] 0.396770 s [racon::Polisher::polish] generating consensus [====================] 0.488768 s [racon::Polisher::] total = 0.529808 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (531 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000441 s [racon::Polisher::initialize] loaded sequences 0.029366 s [racon::Polisher::initialize] loaded overlaps 0.000271 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.018158 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.027121 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.052613 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.066196 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.074229 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.081451 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.105099 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.116731 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.126174 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.134476 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.146082 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.156117 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.167041 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.172569 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.180032 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.192460 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.198010 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.210435 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.226517 s [racon::Polisher::initialize] aligning overlaps [====================] 0.235660 s [racon::Polisher::initialize] transformed data into windows 0.001510 s [racon::Polisher::polish] generating consensus [=> ] 0.058172 s [racon::Polisher::polish] generating consensus [==> ] 0.058191 s [racon::Polisher::polish] generating consensus [===> ] 0.110218 s [racon::Polisher::polish] generating consensus [====> ] 0.110245 s [racon::Polisher::polish] generating consensus [=====> ] 0.131392 s [racon::Polisher::polish] generating consensus [======> ] 0.131412 s [racon::Polisher::polish] generating consensus [=======> ] 0.158199 s [racon::Polisher::polish] generating consensus [========> ] 0.158232 s [racon::Polisher::polish] generating consensus [=========> ] 0.189667 s [racon::Polisher::polish] generating consensus [==========> ] 0.190593 s [racon::Polisher::polish] generating consensus [===========> ] 0.253455 s [racon::Polisher::polish] generating consensus [============> ] 0.265304 s [racon::Polisher::polish] generating consensus [=============> ] 0.375692 s [racon::Polisher::polish] generating consensus [==============> ] 0.376173 s [racon::Polisher::polish] generating consensus [===============> ] 0.448145 s [racon::Polisher::polish] generating consensus [================> ] 0.448185 s [racon::Polisher::polish] generating consensus [=================> ] 0.512037 s [racon::Polisher::polish] generating consensus [==================> ] 0.512055 s [racon::Polisher::polish] generating consensus [===================>] 0.565995 s [racon::Polisher::polish] generating consensus [====================] 0.670360 s [racon::Polisher::] total = 0.948003 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (979 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000408 s [racon::Polisher::initialize] loaded sequences 0.029246 s [racon::Polisher::initialize] loaded overlaps 0.000267 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.017647 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026613 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038444 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046852 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057586 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067264 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.090641 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102228 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.111762 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120132 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.131731 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.141811 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.152732 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.158163 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.165567 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.181593 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.187154 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.196163 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.208453 s [racon::Polisher::initialize] aligning overlaps [====================] 0.223115 s [racon::Polisher::initialize] transformed data into windows 0.001646 s [racon::Polisher::polish] generating consensus [=> ] 0.017230 s [racon::Polisher::polish] generating consensus [==> ] 0.031810 s [racon::Polisher::polish] generating consensus [===> ] 0.044297 s [racon::Polisher::polish] generating consensus [====> ] 0.055541 s [racon::Polisher::polish] generating consensus [=====> ] 0.062446 s [racon::Polisher::polish] generating consensus [======> ] 0.069952 s [racon::Polisher::polish] generating consensus [=======> ] 0.077133 s [racon::Polisher::polish] generating consensus [========> ] 0.085451 s [racon::Polisher::polish] generating consensus [=========> ] 0.099313 s [racon::Polisher::polish] generating consensus [==========> ] 0.113337 s [racon::Polisher::polish] generating consensus [===========> ] 0.132588 s [racon::Polisher::polish] generating consensus [============> ] 0.151753 s [racon::Polisher::polish] generating consensus [=============> ] 0.182382 s [racon::Polisher::polish] generating consensus [==============> ] 0.212910 s [racon::Polisher::polish] generating consensus [===============> ] 0.235926 s [racon::Polisher::polish] generating consensus [================> ] 0.251739 s [racon::Polisher::polish] generating consensus [=================> ] 0.273853 s [racon::Polisher::polish] generating consensus [==================> ] 0.287265 s [racon::Polisher::polish] generating consensus [===================>] 0.301641 s [racon::Polisher::polish] generating consensus [====================] 0.373529 s [racon::Polisher::] total = 0.637602 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (640 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.028823 s [racon::Polisher::initialize] loaded sequences 0.029100 s [racon::Polisher::initialize] loaded overlaps 0.006649 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.019141 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.034052 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039551 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.049265 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058002 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067994 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.084116 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.093557 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.108234 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120228 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.133124 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.153156 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.166958 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183037 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.193607 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.210740 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.221242 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.226025 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.238284 s [racon::Polisher::initialize] aligning overlaps [====================] 0.253624 s [racon::Polisher::initialize] transformed data into windows 0.002650 s [racon::Polisher::polish] generating consensus [=> ] 0.017793 s [racon::Polisher::polish] generating consensus [==> ] 0.032201 s [racon::Polisher::polish] generating consensus [===> ] 0.047910 s [racon::Polisher::polish] generating consensus [====> ] 0.048202 s [racon::Polisher::polish] generating consensus [=====> ] 0.058441 s [racon::Polisher::polish] generating consensus [======> ] 0.064916 s [racon::Polisher::polish] generating consensus [=======> ] 0.074954 s [racon::Polisher::polish] generating consensus [========> ] 0.077569 s [racon::Polisher::polish] generating consensus [=========> ] 0.097109 s [racon::Polisher::polish] generating consensus [==========> ] 0.106480 s [racon::Polisher::polish] generating consensus [===========> ] 0.114493 s [racon::Polisher::polish] generating consensus [============> ] 0.117697 s [racon::Polisher::polish] generating consensus [=============> ] 0.127076 s [racon::Polisher::polish] generating consensus [==============> ] 0.127352 s [racon::Polisher::polish] generating consensus [===============> ] 0.148759 s [racon::Polisher::polish] generating consensus [================> ] 0.149051 s [racon::Polisher::polish] generating consensus [=================> ] 0.187414 s [racon::Polisher::polish] generating consensus [==================> ] 0.201457 s [racon::Polisher::polish] generating consensus [===================>] 0.215442 s [racon::Polisher::polish] generating consensus [====================] 0.218514 s [racon::Polisher::] total = 0.539659 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (541 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.028775 s [racon::Polisher::initialize] loaded sequences 0.028807 s [racon::Polisher::initialize] loaded overlaps 0.006426 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.283192 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.468190 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.644170 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.892289 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.109103 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.260642 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.465283 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.728936 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.972199 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.215748 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.403438 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.670273 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.940914 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.162468 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.473926 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.756675 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.004039 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.270297 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.575035 s [racon::Polisher::initialize] aligning overlaps [====================] 4.811080 s [racon::Polisher::initialize] transformed data into windows 0.042346 s [racon::Polisher::polish] generating consensus [=> ] 0.690490 s [racon::Polisher::polish] generating consensus [==> ] 1.204561 s [racon::Polisher::polish] generating consensus [===> ] 1.746567 s [racon::Polisher::polish] generating consensus [====> ] 2.193128 s [racon::Polisher::polish] generating consensus [=====> ] 2.690613 s [racon::Polisher::polish] generating consensus [======> ] 3.263933 s [racon::Polisher::polish] generating consensus [=======> ] 3.849673 s [racon::Polisher::polish] generating consensus [========> ] 4.282120 s [racon::Polisher::polish] generating consensus [=========> ] 4.841189 s [racon::Polisher::polish] generating consensus [==========> ] 5.490045 s [racon::Polisher::polish] generating consensus [===========> ] 6.036182 s [racon::Polisher::polish] generating consensus [============> ] 6.610903 s [racon::Polisher::polish] generating consensus [=============> ] 7.105567 s [racon::Polisher::polish] generating consensus [==============> ] 7.644885 s [racon::Polisher::polish] generating consensus [===============> ] 8.225454 s [racon::Polisher::polish] generating consensus [================> ] 8.542380 s [racon::Polisher::polish] generating consensus [=================> ] 9.189410 s [racon::Polisher::polish] generating consensus [==================> ] 9.796615 s [racon::Polisher::polish] generating consensus [===================>] 10.381378 s [racon::Polisher::polish] generating consensus [====================] 10.767047 s [racon::Polisher::] total = 15.687145 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (15688 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.012497 s [racon::Polisher::initialize] loaded sequences 0.012578 s [racon::Polisher::initialize] loaded overlaps 0.006537 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.282159 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.467121 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.640569 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.888344 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.130640 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.282012 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.486767 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.750401 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.992916 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.235768 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.422953 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.689922 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.959521 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.188147 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.490754 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.773132 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.020007 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.298316 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.603729 s [racon::Polisher::initialize] aligning overlaps [====================] 4.837116 s [racon::Polisher::initialize] transformed data into windows 0.012146 s [racon::Polisher::polish] generating consensus [=> ] 0.945851 s [racon::Polisher::polish] generating consensus [==> ] 1.682066 s [racon::Polisher::polish] generating consensus [===> ] 2.404307 s [racon::Polisher::polish] generating consensus [====> ] 2.949219 s [racon::Polisher::polish] generating consensus [=====> ] 3.626471 s [racon::Polisher::polish] generating consensus [======> ] 4.365279 s [racon::Polisher::polish] generating consensus [=======> ] 5.158011 s [racon::Polisher::polish] generating consensus [========> ] 5.725713 s [racon::Polisher::polish] generating consensus [=========> ] 6.472069 s [racon::Polisher::polish] generating consensus [==========> ] 7.333330 s [racon::Polisher::polish] generating consensus [===========> ] 8.057573 s [racon::Polisher::polish] generating consensus [============> ] 8.838212 s [racon::Polisher::polish] generating consensus [=============> ] 9.557059 s [racon::Polisher::polish] generating consensus [==============> ] 10.291669 s [racon::Polisher::polish] generating consensus [===============> ] 11.032808 s [racon::Polisher::polish] generating consensus [================> ] 11.430081 s [racon::Polisher::polish] generating consensus [=================> ] 12.439348 s [racon::Polisher::polish] generating consensus [==================> ] 13.325248 s [racon::Polisher::polish] generating consensus [===================>] 14.205498 s [racon::Polisher::polish] generating consensus [====================] 14.738693 s [racon::Polisher::] total = 19.621087 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (19623 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.029379 s [racon::Polisher::initialize] loaded sequences 0.029194 s [racon::Polisher::initialize] loaded overlaps 0.006265 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.282923 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.467689 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.643860 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.892851 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.109218 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.260547 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.465417 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.729444 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.972529 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.216939 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.404575 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.671713 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.941560 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.163627 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.473730 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.755835 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.003148 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.272448 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.577399 s [racon::Polisher::initialize] aligning overlaps [====================] 4.815405 s [racon::Polisher::initialize] transformed data into windows 0.042641 s [racon::Polisher::polish] generating consensus [=> ] 0.678691 s [racon::Polisher::polish] generating consensus [==> ] 1.189099 s [racon::Polisher::polish] generating consensus [===> ] 1.726106 s [racon::Polisher::polish] generating consensus [====> ] 2.169270 s [racon::Polisher::polish] generating consensus [=====> ] 2.706619 s [racon::Polisher::polish] generating consensus [======> ] 3.275809 s [racon::Polisher::polish] generating consensus [=======> ] 3.847850 s [racon::Polisher::polish] generating consensus [========> ] 4.304782 s [racon::Polisher::polish] generating consensus [=========> ] 4.882106 s [racon::Polisher::polish] generating consensus [==========> ] 5.626803 s [racon::Polisher::polish] generating consensus [===========> ] 6.249326 s [racon::Polisher::polish] generating consensus [============> ] 6.888508 s [racon::Polisher::polish] generating consensus [=============> ] 7.420152 s [racon::Polisher::polish] generating consensus [==============> ] 7.978796 s [racon::Polisher::polish] generating consensus [===============> ] 8.560372 s [racon::Polisher::polish] generating consensus [================> ] 8.891856 s [racon::Polisher::polish] generating consensus [=================> ] 9.516109 s [racon::Polisher::polish] generating consensus [==================> ] 10.106316 s [racon::Polisher::polish] generating consensus [===================>] 10.651866 s [racon::Polisher::polish] generating consensus [====================] 10.947345 s [racon::Polisher::] total = 15.872070 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (15874 ms) [----------] 10 tests from RaconPolishingTest (55803 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (55816 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4136814 and its subdirectories I: Current time: Fri May 8 13:59:28 -12 2026 I: pbuilder-time-stamp: 1778291968