I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 6 09:36:34 +14 2025 I: pbuilder-time-stamp: 1743881794 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/619413/tmp/hooks/D01_modify_environment starting debug: Running on ionos11-amd64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 5 19:37 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/619413/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/619413/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=amd64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=x86_64 HOST_ARCH=amd64 IFS=' ' INVOCATION_ID=bda9e041beeb458b848baf3ba252bb2e LANG=C LANGUAGE=et_EE:et LC_ALL=C MACHTYPE=x86_64-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=619413 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IOGWeHYW/pbuilderrc_pv3j --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IOGWeHYW/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=111 SUDO_UID=106 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://46.16.76.132:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/619413/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 72 newly installed, 0 to remove and 0 not upgraded. Need to get 33.5 MB of archives. After unpacking 121 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get: 2 http://deb.debian.org/debian trixie/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get: 3 http://deb.debian.org/debian trixie/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get: 6 http://deb.debian.org/debian trixie/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get: 7 http://deb.debian.org/debian trixie/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get: 8 http://deb.debian.org/debian trixie/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get: 9 http://deb.debian.org/debian trixie/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get: 10 http://deb.debian.org/debian trixie/main amd64 bsdextrautils amd64 2.40.4-5 [92.4 kB] Get: 11 http://deb.debian.org/debian trixie/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get: 12 http://deb.debian.org/debian trixie/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get: 13 http://deb.debian.org/debian trixie/main amd64 m4 amd64 1.4.19-7 [294 kB] Get: 14 http://deb.debian.org/debian trixie/main amd64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get: 16 http://deb.debian.org/debian trixie/main amd64 automake all 1:1.17-4 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main amd64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main amd64 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian trixie/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.4 [698 kB] Get: 20 http://deb.debian.org/debian trixie/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get: 21 http://deb.debian.org/debian trixie/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get: 22 http://deb.debian.org/debian trixie/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get: 23 http://deb.debian.org/debian trixie/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB] Get: 24 http://deb.debian.org/debian trixie/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get: 25 http://deb.debian.org/debian trixie/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get: 26 http://deb.debian.org/debian trixie/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get: 27 http://deb.debian.org/debian trixie/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get: 28 http://deb.debian.org/debian trixie/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get: 31 http://deb.debian.org/debian trixie/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get: 32 http://deb.debian.org/debian trixie/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB] Get: 33 http://deb.debian.org/debian trixie/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get: 34 http://deb.debian.org/debian trixie/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get: 35 http://deb.debian.org/debian trixie/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get: 36 http://deb.debian.org/debian trixie/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB] Get: 37 http://deb.debian.org/debian trixie/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get: 38 http://deb.debian.org/debian trixie/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get: 39 http://deb.debian.org/debian trixie/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get: 40 http://deb.debian.org/debian trixie/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get: 41 http://deb.debian.org/debian trixie/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get: 42 http://deb.debian.org/debian trixie/main amd64 libcurl4t64 amd64 8.13.0~rc3-1 [380 kB] Get: 43 http://deb.debian.org/debian trixie/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get: 44 http://deb.debian.org/debian trixie/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get: 45 http://deb.debian.org/debian trixie/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get: 46 http://deb.debian.org/debian trixie/main amd64 libuv1t64 amd64 1.50.0-2 [154 kB] Get: 47 http://deb.debian.org/debian trixie/main amd64 cmake amd64 3.31.6-1 [12.0 MB] Get: 48 http://deb.debian.org/debian trixie/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 49 http://deb.debian.org/debian trixie/main amd64 libtool all 2.5.4-4 [539 kB] Get: 50 http://deb.debian.org/debian trixie/main amd64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian trixie/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian trixie/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 53 http://deb.debian.org/debian trixie/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 54 http://deb.debian.org/debian trixie/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian trixie/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get: 56 http://deb.debian.org/debian trixie/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get: 57 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.2 [919 kB] Get: 60 http://deb.debian.org/debian trixie/main amd64 googletest all 1.16.0-1 [517 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 62 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get: 63 http://deb.debian.org/debian trixie/main amd64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 64 http://deb.debian.org/debian trixie/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 65 http://deb.debian.org/debian trixie/main amd64 libcereal-dev amd64 1.3.2+dfsg-5 [221 kB] Get: 66 http://deb.debian.org/debian trixie/main amd64 libedlib1 amd64 1.2.7-6+b3 [18.1 kB] Get: 67 http://deb.debian.org/debian trixie/main amd64 libedlib-dev amd64 1.2.7-6+b3 [23.3 kB] Get: 68 http://deb.debian.org/debian trixie/main amd64 libgtest-dev amd64 1.16.0-1 [259 kB] Get: 69 http://deb.debian.org/debian trixie/main amd64 libspoa7.0.0 amd64 4.1.4-2+b1 [74.1 kB] Get: 70 http://deb.debian.org/debian trixie/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 71 http://deb.debian.org/debian trixie/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 72 http://deb.debian.org/debian trixie/main amd64 rampler amd64 2.1.1-1 [21.2 kB] Fetched 33.5 MB in 4s (8166 kB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19805 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_amd64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_amd64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_amd64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-5_amd64.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../10-libpipeline1_1.5.8-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_amd64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-7_amd64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... 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Processing triggers for libc-bin (2.41-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/619413/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/619413/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -Dracon_build_tests=ON 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CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' 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object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra 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'/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (2 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (6 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (13 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (58 ms) [----------] 5 tests from RaconInitializeTest (82 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001133 s [racon::Polisher::initialize] loaded sequences 0.056150 s [racon::Polisher::initialize] loaded overlaps 0.000545 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.085249 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.229390 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.338758 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.462804 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.462892 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.462964 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.463034 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.463108 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.463182 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.538832 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.538962 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.539051 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.539142 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.539206 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.649092 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.649224 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.649313 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.649389 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.649469 s [racon::Polisher::initialize] aligning overlaps [====================] 0.654684 s [racon::Polisher::initialize] transformed data into windows 0.004371 s [racon::Polisher::polish] generating consensus [=> ] 0.225137 s [racon::Polisher::polish] generating consensus [==> ] 0.378841 s [racon::Polisher::polish] generating consensus [===> ] 0.568396 s [racon::Polisher::polish] generating consensus [====> ] 0.659721 s [racon::Polisher::polish] generating consensus [=====> ] 0.767587 s [racon::Polisher::polish] generating consensus [======> ] 0.767760 s [racon::Polisher::polish] generating consensus [=======> ] 0.767866 s [racon::Polisher::polish] generating consensus [========> ] 0.768072 s [racon::Polisher::polish] generating consensus [=========> ] 0.768188 s [racon::Polisher::polish] generating consensus [==========> ] 0.768312 s [racon::Polisher::polish] generating consensus [===========> ] 0.884995 s [racon::Polisher::polish] generating consensus [============> ] 1.059466 s [racon::Polisher::polish] generating consensus [=============> ] 1.059634 s [racon::Polisher::polish] generating consensus [==============> ] 1.061525 s [racon::Polisher::polish] generating consensus [===============> ] 1.062019 s [racon::Polisher::polish] generating consensus [================> ] 1.062308 s [racon::Polisher::polish] generating consensus [=================> ] 1.128190 s [racon::Polisher::polish] generating consensus [==================> ] 1.128296 s [racon::Polisher::polish] generating consensus [===================>] 1.128333 s [racon::Polisher::polish] generating consensus [====================] 1.210276 s [racon::Polisher::] total = 1.956753 s [ OK ] RaconPolishingTest.ConsensusWithQualities (1990 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000700 s [racon::Polisher::initialize] loaded sequences 0.019611 s [racon::Polisher::initialize] loaded overlaps 0.000352 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.157497 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.281499 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.389487 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.389512 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.393469 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.393480 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.393491 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.393502 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.437478 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.437494 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.437505 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.437516 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.437528 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.437540 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.437551 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.445482 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.525268 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.525301 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.525317 s [racon::Polisher::initialize] aligning overlaps [====================] 0.525327 s [racon::Polisher::initialize] transformed data into windows 0.000715 s [racon::Polisher::polish] generating consensus [=> ] 0.233593 s [racon::Polisher::polish] generating consensus [==> ] 0.445279 s [racon::Polisher::polish] generating consensus [===> ] 0.690770 s [racon::Polisher::polish] generating consensus [====> ] 0.880353 s [racon::Polisher::polish] generating consensus [=====> ] 1.006728 s [racon::Polisher::polish] generating consensus [======> ] 1.006936 s [racon::Polisher::polish] generating consensus [=======> ] 1.007034 s [racon::Polisher::polish] generating consensus [========> ] 1.007494 s [racon::Polisher::polish] generating consensus [=========> ] 1.007592 s [racon::Polisher::polish] generating consensus [==========> ] 1.007710 s [racon::Polisher::polish] generating consensus [===========> ] 1.007824 s [racon::Polisher::polish] generating consensus [============> ] 1.007949 s [racon::Polisher::polish] generating consensus [=============> ] 1.018742 s [racon::Polisher::polish] generating consensus [==============> ] 1.049051 s [racon::Polisher::polish] generating consensus [===============> ] 1.049237 s [racon::Polisher::polish] generating consensus [================> ] 1.387019 s [racon::Polisher::polish] generating consensus [=================> ] 1.387253 s [racon::Polisher::polish] generating consensus [==================> ] 1.394475 s [racon::Polisher::polish] generating consensus [===================>] 1.394647 s [racon::Polisher::polish] generating consensus [====================] 1.395117 s [racon::Polisher::] total = 2.074364 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (2122 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.004149 s [racon::Polisher::initialize] loaded sequences 0.313078 s [racon::Polisher::initialize] loaded overlaps 0.179117 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.016017 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.016135 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.017085 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020565 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020673 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020737 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.020798 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.020861 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.020949 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.020981 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.021041 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.021100 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.021160 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.021220 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.021327 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.021406 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.021468 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.021494 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.021552 s [racon::Polisher::initialize] aligning overlaps [====================] 0.021612 s [racon::Polisher::initialize] transformed data into windows 0.016538 s [racon::Polisher::polish] generating consensus [=> ] 0.237076 s [racon::Polisher::polish] generating consensus [==> ] 0.454071 s [racon::Polisher::polish] generating consensus [===> ] 0.729339 s [racon::Polisher::polish] generating consensus [====> ] 0.729582 s [racon::Polisher::polish] generating consensus [=====> ] 0.729703 s [racon::Polisher::polish] generating consensus [======> ] 0.733092 s [racon::Polisher::polish] generating consensus [=======> ] 0.741066 s [racon::Polisher::polish] generating consensus [========> ] 0.741324 s [racon::Polisher::polish] generating consensus [=========> ] 0.741517 s [racon::Polisher::polish] generating consensus [==========> ] 0.741628 s [racon::Polisher::polish] generating consensus [===========> ] 0.755050 s [racon::Polisher::polish] generating consensus [============> ] 1.145196 s [racon::Polisher::polish] generating consensus [=============> ] 1.145420 s [racon::Polisher::polish] generating consensus [==============> ] 1.146133 s [racon::Polisher::polish] generating consensus [===============> ] 1.221919 s [racon::Polisher::polish] generating consensus [================> ] 1.222333 s [racon::Polisher::polish] generating consensus [=================> ] 1.222538 s [racon::Polisher::polish] generating consensus [==================> ] 1.222653 s [racon::Polisher::polish] generating consensus [===================>] 1.222764 s [racon::Polisher::polish] generating consensus [====================] 1.226635 s [racon::Polisher::] total = 1.892896 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (2001 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.004182 s [racon::Polisher::initialize] loaded sequences 0.141468 s [racon::Polisher::initialize] loaded overlaps 0.182882 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.016460 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.017607 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.020149 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020243 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020392 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020453 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.020547 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.020643 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.020725 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.020766 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.020910 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.021013 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.021035 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.021115 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.021176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.021283 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.021315 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.021407 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.021438 s [racon::Polisher::initialize] aligning overlaps [====================] 0.021495 s [racon::Polisher::initialize] transformed data into windows 0.003484 s [racon::Polisher::polish] generating consensus [=> ] 0.277217 s [racon::Polisher::polish] generating consensus [==> ] 0.697148 s [racon::Polisher::polish] generating consensus [===> ] 0.929294 s [racon::Polisher::polish] generating consensus [====> ] 1.106181 s [racon::Polisher::polish] generating consensus [=====> ] 1.232317 s [racon::Polisher::polish] generating consensus [======> ] 1.360869 s [racon::Polisher::polish] generating consensus [=======> ] 1.514855 s [racon::Polisher::polish] generating consensus [========> ] 1.525538 s [racon::Polisher::polish] generating consensus [=========> ] 1.532995 s [racon::Polisher::polish] generating consensus [==========> ] 1.742702 s [racon::Polisher::polish] generating consensus [===========> ] 1.742908 s [racon::Polisher::polish] generating consensus [============> ] 1.743257 s [racon::Polisher::polish] generating consensus [=============> ] 1.765351 s [racon::Polisher::polish] generating consensus [==============> ] 1.765513 s [racon::Polisher::polish] generating consensus [===============> ] 1.765718 s [racon::Polisher::polish] generating consensus [================> ] 1.766084 s [racon::Polisher::polish] generating consensus [=================> ] 1.766179 s [racon::Polisher::polish] generating consensus [==================> ] 1.766380 s [racon::Polisher::polish] generating consensus [===================>] 1.769541 s [racon::Polisher::polish] generating consensus [====================] 2.063667 s [racon::Polisher::] total = 2.499888 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (2520 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.004041 s [racon::Polisher::initialize] loaded sequences 0.301729 s [racon::Polisher::initialize] loaded overlaps 0.002659 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.181466 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.285595 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.447086 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.553077 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.626274 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.666189 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.666447 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.714211 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.922220 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.963543 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.965691 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.033665 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.089842 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.090153 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.152930 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.153205 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.178708 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.214484 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.214703 s [racon::Polisher::initialize] aligning overlaps [====================] 1.291264 s [racon::Polisher::initialize] transformed data into windows 0.003962 s [racon::Polisher::polish] generating consensus [=> ] 0.708508 s [racon::Polisher::polish] generating consensus [==> ] 0.711442 s [racon::Polisher::polish] generating consensus [===> ] 1.340856 s [racon::Polisher::polish] generating consensus [====> ] 1.341559 s [racon::Polisher::polish] generating consensus [=====> ] 1.674963 s [racon::Polisher::polish] generating consensus [======> ] 1.675675 s [racon::Polisher::polish] generating consensus [=======> ] 1.959064 s [racon::Polisher::polish] generating consensus [========> ] 1.959775 s [racon::Polisher::polish] generating consensus [=========> ] 2.417153 s [racon::Polisher::polish] generating consensus [==========> ] 2.417360 s [racon::Polisher::polish] generating consensus [===========> ] 3.228444 s [racon::Polisher::polish] generating consensus [============> ] 3.273545 s [racon::Polisher::polish] generating consensus [=============> ] 4.282408 s [racon::Polisher::polish] generating consensus [==============> ] 4.613296 s [racon::Polisher::polish] generating consensus [===============> ] 5.375538 s [racon::Polisher::polish] generating consensus [================> ] 5.419209 s [racon::Polisher::polish] generating consensus [=================> ] 6.292143 s [racon::Polisher::polish] generating consensus [==================> ] 6.292332 s [racon::Polisher::polish] generating consensus [===================>] 6.891250 s [racon::Polisher::polish] generating consensus [====================] 8.203863 s [racon::Polisher::] total = 9.846984 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (10073 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.017357 s [racon::Polisher::initialize] loaded sequences 0.103044 s [racon::Polisher::initialize] loaded overlaps 0.000671 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.554765 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.756053 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.942155 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.166143 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.322778 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.426628 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.898838 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.226145 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.432878 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.606463 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.859805 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.070784 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.326768 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.382965 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.402871 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.622782 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.690897 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.691574 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.754953 s [racon::Polisher::initialize] aligning overlaps [====================] 3.882902 s [racon::Polisher::initialize] transformed data into windows 0.011380 s [racon::Polisher::polish] generating consensus [=> ] 0.500837 s [racon::Polisher::polish] generating consensus [==> ] 0.831617 s [racon::Polisher::polish] generating consensus [===> ] 1.175657 s [racon::Polisher::polish] generating consensus [====> ] 1.387828 s [racon::Polisher::polish] generating consensus [=====> ] 1.515699 s [racon::Polisher::polish] generating consensus [======> ] 1.743777 s [racon::Polisher::polish] generating consensus [=======> ] 1.744566 s [racon::Polisher::polish] generating consensus [========> ] 1.745286 s [racon::Polisher::polish] generating consensus [=========> ] 1.745977 s [racon::Polisher::polish] generating consensus [==========> ] 1.843774 s [racon::Polisher::polish] generating consensus [===========> ] 2.107765 s [racon::Polisher::polish] generating consensus [============> ] 2.108503 s [racon::Polisher::polish] generating consensus [=============> ] 2.109163 s [racon::Polisher::polish] generating consensus [==============> ] 2.123582 s [racon::Polisher::polish] generating consensus [===============> ] 2.124389 s [racon::Polisher::polish] generating consensus [================> ] 2.131472 s [racon::Polisher::polish] generating consensus [=================> ] 2.132253 s [racon::Polisher::polish] generating consensus [==================> ] 2.267798 s [racon::Polisher::polish] generating consensus [===================>] 2.268458 s [racon::Polisher::polish] generating consensus [====================] 2.269852 s [racon::Polisher::] total = 6.379655 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (6393 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.331043 s [racon::Polisher::initialize] loaded sequences 0.505507 s [racon::Polisher::initialize] loaded overlaps 0.104982 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.267264 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.503836 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.584774 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.744776 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.892799 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.036775 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.072974 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.156994 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.173421 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.201134 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.221130 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.225142 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.246249 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.248040 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.274242 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.275992 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.277855 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.325379 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.325515 s [racon::Polisher::initialize] aligning overlaps [====================] 1.325588 s [racon::Polisher::initialize] transformed data into windows 0.034594 s [racon::Polisher::polish] generating consensus [=> ] 0.201394 s [racon::Polisher::polish] generating consensus [==> ] 0.373158 s [racon::Polisher::polish] generating consensus [===> ] 0.555672 s [racon::Polisher::polish] generating consensus [====> ] 0.575000 s [racon::Polisher::polish] generating consensus [=====> ] 0.594512 s [racon::Polisher::polish] generating consensus [======> ] 0.643231 s [racon::Polisher::polish] generating consensus [=======> ] 0.651324 s [racon::Polisher::polish] generating consensus [========> ] 0.673612 s [racon::Polisher::polish] generating consensus [=========> ] 0.687990 s [racon::Polisher::polish] generating consensus [==========> ] 0.700682 s [racon::Polisher::polish] generating consensus [===========> ] 0.716460 s [racon::Polisher::polish] generating consensus [============> ] 0.723666 s [racon::Polisher::polish] generating consensus [=============> ] 0.735941 s [racon::Polisher::polish] generating consensus [==============> ] 0.748222 s [racon::Polisher::polish] generating consensus [===============> ] 0.772457 s [racon::Polisher::polish] generating consensus [================> ] 0.783914 s [racon::Polisher::polish] generating consensus [=================> ] 0.820151 s [racon::Polisher::polish] generating consensus [==================> ] 0.822638 s [racon::Polisher::polish] generating consensus [===================>] 0.853150 s [racon::Polisher::polish] generating consensus [====================] 0.855799 s [racon::Polisher::] total = 3.161603 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (3187 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.381805 s [racon::Polisher::initialize] loaded sequences 0.414602 s [racon::Polisher::initialize] loaded overlaps 0.080833 s [racon::Polisher::initialize] aligning overlaps [=> ] 3.968168 s [racon::Polisher::initialize] aligning overlaps [==> ] 5.936080 s [racon::Polisher::initialize] aligning overlaps [===> ] 7.764117 s [racon::Polisher::initialize] aligning overlaps [====> ] 10.541266 s [racon::Polisher::initialize] aligning overlaps [=====> ] 12.847530 s [racon::Polisher::initialize] aligning overlaps [======> ] 13.664201 s [racon::Polisher::initialize] aligning overlaps [=======> ] 15.857878 s [racon::Polisher::initialize] aligning overlaps [========> ] 16.168650 s [racon::Polisher::initialize] aligning overlaps [=========> ] 16.308266 s [racon::Polisher::initialize] aligning overlaps [==========> ] 16.494560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 16.664216 s [racon::Polisher::initialize] aligning overlaps [============> ] 16.842873 s [racon::Polisher::initialize] aligning overlaps [=============> ] 17.058329 s [racon::Polisher::initialize] aligning overlaps [==============> ] 17.245611 s [racon::Polisher::initialize] aligning overlaps [===============> ] 17.426516 s [racon::Polisher::initialize] aligning overlaps [================> ] 17.612870 s [racon::Polisher::initialize] aligning overlaps [=================> ] 17.804800 s [racon::Polisher::initialize] aligning overlaps [==================> ] 17.994422 s [racon::Polisher::initialize] aligning overlaps [===================>] 18.179877 s [racon::Polisher::initialize] aligning overlaps [====================] 18.362879 s [racon::Polisher::initialize] transformed data into windows 0.455502 s [racon::Polisher::polish] generating consensus [=> ] 8.073364 s [racon::Polisher::polish] generating consensus [==> ] 13.754965 s [racon::Polisher::polish] generating consensus [===> ] 18.463079 s [racon::Polisher::polish] generating consensus [====> ] 23.247619 s [racon::Polisher::polish] generating consensus [=====> ] 28.787421 s [racon::Polisher::polish] generating consensus [======> ] 29.682317 s [racon::Polisher::polish] generating consensus [=======> ] 30.591997 s [racon::Polisher::polish] generating consensus [========> ] 33.071050 s [racon::Polisher::polish] generating consensus [=========> ] 36.886562 s [racon::Polisher::polish] generating consensus [==========> ] 41.051829 s [racon::Polisher::polish] generating consensus [===========> ] 41.528739 s [racon::Polisher::polish] generating consensus [============> ] 42.282323 s [racon::Polisher::polish] generating consensus [=============> ] 42.943480 s [racon::Polisher::polish] generating consensus [==============> ] 43.708180 s [racon::Polisher::polish] generating consensus [===============> ] 44.454977 s [racon::Polisher::polish] generating consensus [================> ] 45.026838 s [racon::Polisher::polish] generating consensus [=================> ] 45.742555 s [racon::Polisher::polish] generating consensus [==================> ] 46.526092 s [racon::Polisher::polish] generating consensus [===================>] 47.274965 s [racon::Polisher::polish] generating consensus [====================] 48.135478 s [racon::Polisher::] total = 67.849230 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (67887 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.147261 s [racon::Polisher::initialize] loaded sequences 0.144708 s [racon::Polisher::initialize] loaded overlaps 0.084418 s [racon::Polisher::initialize] aligning overlaps [=> ] 3.069405 s [racon::Polisher::initialize] aligning overlaps [==> ] 3.975716 s [racon::Polisher::initialize] aligning overlaps [===> ] 4.263972 s [racon::Polisher::initialize] aligning overlaps [====> ] 6.865006 s [racon::Polisher::initialize] aligning overlaps [=====> ] 7.988184 s [racon::Polisher::initialize] aligning overlaps [======> ] 8.580457 s [racon::Polisher::initialize] aligning overlaps [=======> ] 9.096001 s [racon::Polisher::initialize] aligning overlaps [========> ] 10.983741 s [racon::Polisher::initialize] aligning overlaps [=========> ] 11.335805 s [racon::Polisher::initialize] aligning overlaps [==========> ] 11.767931 s [racon::Polisher::initialize] aligning overlaps [===========> ] 12.103727 s [racon::Polisher::initialize] aligning overlaps [============> ] 12.491724 s [racon::Polisher::initialize] aligning overlaps [=============> ] 12.739730 s [racon::Polisher::initialize] aligning overlaps [==============> ] 12.951728 s [racon::Polisher::initialize] aligning overlaps [===============> ] 13.211718 s [racon::Polisher::initialize] aligning overlaps [================> ] 13.479718 s [racon::Polisher::initialize] aligning overlaps [=================> ] 13.871606 s [racon::Polisher::initialize] aligning overlaps [==================> ] 14.263880 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.803894 s [racon::Polisher::initialize] aligning overlaps [====================] 15.125435 s [racon::Polisher::initialize] transformed data into windows 0.133598 s [racon::Polisher::polish] generating consensus [=> ] 4.055308 s [racon::Polisher::polish] generating consensus [==> ] 5.538022 s [racon::Polisher::polish] generating consensus [===> ] 7.051575 s [racon::Polisher::polish] generating consensus [====> ] 12.675022 s [racon::Polisher::polish] generating consensus [=====> ] 15.653493 s [racon::Polisher::polish] generating consensus [======> ] 17.221348 s [racon::Polisher::polish] generating consensus [=======> ] 18.849028 s [racon::Polisher::polish] generating consensus [========> ] 22.687468 s [racon::Polisher::polish] generating consensus [=========> ] 30.992730 s [racon::Polisher::polish] generating consensus [==========> ] 34.775110 s [racon::Polisher::polish] generating consensus [===========> ] 36.068039 s [racon::Polisher::polish] generating consensus [============> ] 37.328678 s [racon::Polisher::polish] generating consensus [=============> ] 38.509448 s [racon::Polisher::polish] generating consensus [==============> ] 39.789979 s [racon::Polisher::polish] generating consensus [===============> ] 40.970893 s [racon::Polisher::polish] generating consensus [================> ] 41.658304 s [racon::Polisher::polish] generating consensus [=================> ] 43.177637 s [racon::Polisher::polish] generating consensus [==================> ] 47.471908 s [racon::Polisher::polish] generating consensus [===================>] 49.475684 s [racon::Polisher::polish] generating consensus [====================] 49.895785 s [racon::Polisher::] total = 65.554388 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (65579 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.313099 s [racon::Polisher::initialize] loaded sequences 0.314732 s [racon::Polisher::initialize] loaded overlaps 0.081567 s [racon::Polisher::initialize] aligning overlaps [=> ] 2.736596 s [racon::Polisher::initialize] aligning overlaps [==> ] 4.701950 s [racon::Polisher::initialize] aligning overlaps [===> ] 6.375443 s [racon::Polisher::initialize] aligning overlaps [====> ] 9.034619 s [racon::Polisher::initialize] aligning overlaps [=====> ] 10.333680 s [racon::Polisher::initialize] aligning overlaps [======> ] 11.851390 s [racon::Polisher::initialize] aligning overlaps [=======> ] 13.857192 s [racon::Polisher::initialize] aligning overlaps [========> ] 15.099061 s [racon::Polisher::initialize] aligning overlaps [=========> ] 15.369676 s [racon::Polisher::initialize] aligning overlaps [==========> ] 15.601741 s [racon::Polisher::initialize] aligning overlaps [===========> ] 15.831436 s [racon::Polisher::initialize] aligning overlaps [============> ] 16.116563 s [racon::Polisher::initialize] aligning overlaps [=============> ] 16.448581 s [racon::Polisher::initialize] aligning overlaps [==============> ] 16.747469 s [racon::Polisher::initialize] aligning overlaps [===============> ] 17.079132 s [racon::Polisher::initialize] aligning overlaps [================> ] 17.402111 s [racon::Polisher::initialize] aligning overlaps [=================> ] 17.602611 s [racon::Polisher::initialize] aligning overlaps [==================> ] 17.925216 s [racon::Polisher::initialize] aligning overlaps [===================>] 18.284597 s [racon::Polisher::initialize] aligning overlaps [====================] 18.571877 s [racon::Polisher::initialize] transformed data into windows 0.564655 s [racon::Polisher::polish] generating consensus [=> ] 8.246499 s [racon::Polisher::polish] generating consensus [==> ] 13.262925 s [racon::Polisher::polish] generating consensus [===> ] 20.895837 s [racon::Polisher::polish] generating consensus [====> ] 27.131145 s [racon::Polisher::polish] generating consensus [=====> ] 32.320387 s [racon::Polisher::polish] generating consensus [======> ] 33.435383 s [racon::Polisher::polish] generating consensus [=======> ] 39.691941 s [racon::Polisher::polish] generating consensus [========> ] 43.367398 s [racon::Polisher::polish] generating consensus [=========> ] 43.973803 s [racon::Polisher::polish] generating consensus [==========> ] 44.313198 s [racon::Polisher::polish] generating consensus [===========> ] 44.704623 s [racon::Polisher::polish] generating consensus [============> ] 45.442476 s [racon::Polisher::polish] generating consensus [=============> ] 46.094272 s [racon::Polisher::polish] generating consensus [==============> ] 46.689209 s [racon::Polisher::polish] generating consensus [===============> ] 47.329501 s [racon::Polisher::polish] generating consensus [================> ] 47.757331 s [racon::Polisher::polish] generating consensus [=================> ] 48.536975 s [racon::Polisher::polish] generating consensus [==================> ] 49.296286 s [racon::Polisher::polish] generating consensus [===================>] 49.954539 s [racon::Polisher::polish] generating consensus [====================] 50.528320 s [racon::Polisher::] total = 70.388272 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (70407 ms) [----------] 10 tests from RaconPolishingTest (232168 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (232251 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/619413/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/619413/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/619413 and its subdirectories I: Current time: Sun Apr 6 09:45:33 +14 2025 I: pbuilder-time-stamp: 1743882333