I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 4 20:48:07 +14 2024 I: pbuilder-time-stamp: 1733294887 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Sep 29 12:45:21 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: no acceptable signature found dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D01_modify_environment starting debug: Running on virt64a. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 4 06:48 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="arm-unknown-linux-gnueabihf") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=armhf DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=4 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=arm HOST_ARCH=armhf IFS=' ' INVOCATION_ID=25dfbc259b6a4bbc8fd4376e14a481db LANG=C LANGUAGE=it_CH:it LC_ALL=C MACHTYPE=arm-unknown-linux-gnueabihf MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnueabihf PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=11751 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.tN5TBszM/pbuilderrc_GKAy --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.tN5TBszM/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=114 SUDO_UID=108 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://10.0.0.15:3142/ I: uname -a Linux i-capture-the-hostname 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/11751/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 32.2 MB of archives. After unpacking 121 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main armhf libproc2-0 armhf 2:4.0.4-6 [56.0 kB] Get: 2 http://deb.debian.org/debian trixie/main armhf procps armhf 2:4.0.4-6 [864 kB] Get: 3 http://deb.debian.org/debian trixie/main armhf sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main armhf libmagic-mgc armhf 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main armhf libmagic1t64 armhf 1:5.45-3+b1 [98.5 kB] Get: 6 http://deb.debian.org/debian trixie/main armhf file armhf 1:5.45-3+b1 [42.3 kB] Get: 7 http://deb.debian.org/debian trixie/main armhf gettext-base armhf 0.22.5-2 [195 kB] Get: 8 http://deb.debian.org/debian trixie/main armhf libuchardet0 armhf 0.0.8-1+b2 [65.6 kB] Get: 9 http://deb.debian.org/debian trixie/main armhf groff-base armhf 1.23.0-5 [1091 kB] Get: 10 http://deb.debian.org/debian trixie/main armhf bsdextrautils armhf 2.40.2-11 [83.6 kB] Get: 11 http://deb.debian.org/debian trixie/main armhf libpipeline1 armhf 1.5.8-1 [35.0 kB] Get: 12 http://deb.debian.org/debian trixie/main armhf man-db armhf 2.13.0-1 [1382 kB] Get: 13 http://deb.debian.org/debian trixie/main armhf m4 armhf 1.4.19-4 [264 kB] Get: 14 http://deb.debian.org/debian trixie/main armhf autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main armhf autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main armhf automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian trixie/main armhf autopoint all 0.22.5-2 [723 kB] Get: 18 http://deb.debian.org/debian trixie/main armhf cmake-data all 3.30.5-1 [2223 kB] Get: 19 http://deb.debian.org/debian trixie/main armhf libicu72 armhf 72.1-5+b1 [9088 kB] Get: 20 http://deb.debian.org/debian trixie/main armhf libxml2 armhf 2.12.7+dfsg+really2.9.14-0.2+b1 [605 kB] Get: 21 http://deb.debian.org/debian trixie/main armhf libarchive13t64 armhf 3.7.4-1.1 [306 kB] Get: 22 http://deb.debian.org/debian trixie/main armhf libbrotli1 armhf 1.1.0-2+b6 [282 kB] Get: 23 http://deb.debian.org/debian trixie/main armhf libkrb5support0 armhf 1.21.3-3 [30.0 kB] Get: 24 http://deb.debian.org/debian trixie/main armhf libcom-err2 armhf 1.47.1-1+b1 [22.3 kB] Get: 25 http://deb.debian.org/debian trixie/main armhf libk5crypto3 armhf 1.21.3-3 [75.8 kB] Get: 26 http://deb.debian.org/debian trixie/main armhf libkeyutils1 armhf 1.6.3-4 [8096 B] Get: 27 http://deb.debian.org/debian trixie/main armhf libkrb5-3 armhf 1.21.3-3 [283 kB] Get: 28 http://deb.debian.org/debian trixie/main armhf libgssapi-krb5-2 armhf 1.21.3-3 [114 kB] Get: 29 http://deb.debian.org/debian trixie/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-8 [18.2 kB] Get: 30 http://deb.debian.org/debian trixie/main armhf libsasl2-2 armhf 2.1.28+dfsg1-8 [50.2 kB] Get: 31 http://deb.debian.org/debian trixie/main armhf libldap-2.5-0 armhf 2.5.18+dfsg-3+b1 [163 kB] Get: 32 http://deb.debian.org/debian trixie/main armhf libnghttp2-14 armhf 1.64.0-1 [62.9 kB] Get: 33 http://deb.debian.org/debian trixie/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB] Get: 34 http://deb.debian.org/debian trixie/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB] Get: 35 http://deb.debian.org/debian trixie/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB] Get: 36 http://deb.debian.org/debian trixie/main armhf libcurl4t64 armhf 8.11.0-1 [303 kB] Get: 37 http://deb.debian.org/debian trixie/main armhf libexpat1 armhf 2.6.4-1 [83.5 kB] Get: 38 http://deb.debian.org/debian trixie/main armhf libjsoncpp26 armhf 1.9.6-3 [69.9 kB] Get: 39 http://deb.debian.org/debian trixie/main armhf librhash1 armhf 1.4.5-1 [143 kB] Get: 40 http://deb.debian.org/debian trixie/main armhf libuv1t64 armhf 1.48.0-7 [134 kB] Get: 41 http://deb.debian.org/debian trixie/main armhf cmake armhf 3.30.5-1 [5365 kB] Get: 42 http://deb.debian.org/debian trixie/main armhf libdebhelper-perl all 13.20 [89.7 kB] Get: 43 http://deb.debian.org/debian trixie/main armhf libtool all 2.4.7-8 [517 kB] Get: 44 http://deb.debian.org/debian trixie/main armhf dh-autoreconf all 20 [17.1 kB] Get: 45 http://deb.debian.org/debian trixie/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 46 http://deb.debian.org/debian trixie/main armhf libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 47 http://deb.debian.org/debian trixie/main armhf dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 48 http://deb.debian.org/debian trixie/main armhf libelf1t64 armhf 0.192-4 [184 kB] Get: 49 http://deb.debian.org/debian trixie/main armhf dwz armhf 0.15-1+b2 [106 kB] Get: 50 http://deb.debian.org/debian trixie/main armhf gettext armhf 0.22.5-2 [1485 kB] Get: 51 http://deb.debian.org/debian trixie/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 52 http://deb.debian.org/debian trixie/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 53 http://deb.debian.org/debian trixie/main armhf debhelper all 13.20 [915 kB] Get: 54 http://deb.debian.org/debian trixie/main armhf googletest all 1.15.2-1 [514 kB] Get: 55 http://deb.debian.org/debian trixie/main armhf libbiosoup-dev all 0.11.0-2 [8000 B] Get: 56 http://deb.debian.org/debian trixie/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB] Get: 57 http://deb.debian.org/debian trixie/main armhf libbioparser-dev all 3.1.0-1 [9108 B] Get: 58 http://deb.debian.org/debian trixie/main armhf rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 59 http://deb.debian.org/debian trixie/main armhf libcereal-dev armhf 1.3.2+dfsg-5 [221 kB] Get: 60 http://deb.debian.org/debian trixie/main armhf libedlib1 armhf 1.2.7-6+b2 [15.4 kB] Get: 61 http://deb.debian.org/debian trixie/main armhf libedlib-dev armhf 1.2.7-6+b2 [20.6 kB] Get: 62 http://deb.debian.org/debian trixie/main armhf libgtest-dev armhf 1.15.2-1 [246 kB] Get: 63 http://deb.debian.org/debian trixie/main armhf libspoa7.0.0 armhf 4.1.4-2+b1 [61.8 kB] Get: 64 http://deb.debian.org/debian trixie/main armhf libspoa-dev armhf 4.1.4-2+b1 [9788 B] Get: 65 http://deb.debian.org/debian trixie/main armhf libthread-pool-dev armhf 4.0.0-2 [7304 B] Get: 66 http://deb.debian.org/debian trixie/main armhf rampler armhf 2.1.1-1 [19.3 kB] Fetched 32.2 MB in 1s (47.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19684 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_armhf.deb ... Unpacking libproc2-0:armhf (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_armhf.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:armhf. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_armhf.deb ... Unpacking libmagic1t64:armhf (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_armhf.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_armhf.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_armhf.deb ... Unpacking libuchardet0:armhf (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_armhf.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_armhf.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../10-libpipeline1_1.5.8-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_armhf.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-4_armhf.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.30.5-1_all.deb ... Unpacking cmake-data (3.30.5-1) ... Selecting previously unselected package libicu72:armhf. Preparing to unpack .../18-libicu72_72.1-5+b1_armhf.deb ... Unpacking libicu72:armhf (72.1-5+b1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_armhf.deb ... Unpacking libxml2:armhf (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:armhf. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_armhf.deb ... Unpacking libarchive13t64:armhf (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:armhf. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_armhf.deb ... Unpacking libbrotli1:armhf (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../22-libkrb5support0_1.21.3-3_armhf.deb ... Unpacking libkrb5support0:armhf (1.21.3-3) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../23-libcom-err2_1.47.1-1+b1_armhf.deb ... Unpacking libcom-err2:armhf (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../24-libk5crypto3_1.21.3-3_armhf.deb ... Unpacking libk5crypto3:armhf (1.21.3-3) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../25-libkeyutils1_1.6.3-4_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.3-4) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../26-libkrb5-3_1.21.3-3_armhf.deb ... Unpacking libkrb5-3:armhf (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:armhf. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/11751/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/11751/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-arm-linux-gnueabihf && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf 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CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp [ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' cd /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf 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'/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (2 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (5 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (6 ms) [----------] 5 tests from RaconInitializeTest (17 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001742 s [racon::Polisher::initialize] loaded sequences 0.088356 s [racon::Polisher::initialize] loaded overlaps 0.002994 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.088245 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.152225 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.244177 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.296960 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.360858 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.420855 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.549014 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.617137 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.677140 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.733171 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.837147 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.933141 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.957078 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.958384 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.959669 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.989381 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.990341 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.991278 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.999531 s [racon::Polisher::initialize] aligning overlaps [====================] 1.002791 s [racon::Polisher::initialize] transformed data into windows 0.008786 s [racon::Polisher::polish] generating consensus [=> ] 0.708484 s [racon::Polisher::polish] generating consensus [==> ] 1.636464 s [racon::Polisher::polish] generating consensus [===> ] 2.124466 s [racon::Polisher::polish] generating consensus [====> ] 2.424726 s [racon::Polisher::polish] generating consensus [=====> ] 2.664684 s [racon::Polisher::polish] generating consensus [======> ] 2.904444 s [racon::Polisher::polish] generating consensus [=======> ] 3.164448 s [racon::Polisher::polish] generating consensus [========> ] 3.408473 s [racon::Polisher::polish] generating consensus [=========> ] 3.770617 s [racon::Polisher::polish] generating consensus [==========> ] 4.100428 s [racon::Polisher::polish] generating consensus [===========> ] 4.704450 s [racon::Polisher::polish] generating consensus [============> ] 5.492458 s [racon::Polisher::polish] generating consensus [=============> ] 6.621392 s [racon::Polisher::polish] generating consensus [==============> ] 7.728454 s [racon::Polisher::polish] generating consensus [===============> ] 8.453320 s [racon::Polisher::polish] generating consensus [================> ] 9.069722 s [racon::Polisher::polish] generating consensus [=================> ] 9.709650 s [racon::Polisher::polish] generating consensus [==================> ] 10.141293 s [racon::Polisher::polish] generating consensus [===================>] 10.645733 s [racon::Polisher::polish] generating consensus [====================] 12.093987 s [racon::Polisher::] total = 13.248588 s [ OK ] RaconPolishingTest.ConsensusWithQualities (13262 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.001554 s [racon::Polisher::initialize] loaded sequences 0.051501 s [racon::Polisher::initialize] loaded overlaps 0.000763 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.097240 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.145198 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.209208 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.256981 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.321210 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.356334 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.428379 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.461204 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.489133 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.513094 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.549109 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.577132 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.609084 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.624887 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.636919 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.653203 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.676335 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.709679 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.710003 s [racon::Polisher::initialize] aligning overlaps [====================] 0.730813 s [racon::Polisher::initialize] transformed data into windows 0.001843 s [racon::Polisher::polish] generating consensus [=> ] 0.611726 s [racon::Polisher::polish] generating consensus [==> ] 1.326785 s [racon::Polisher::polish] generating consensus [===> ] 1.823654 s [racon::Polisher::polish] generating consensus [====> ] 2.230792 s [racon::Polisher::polish] generating consensus [=====> ] 2.482876 s [racon::Polisher::polish] generating consensus [======> ] 2.765184 s [racon::Polisher::polish] generating consensus [=======> ] 3.031700 s [racon::Polisher::polish] generating consensus [========> ] 3.459806 s [racon::Polisher::polish] generating consensus [=========> ] 3.839746 s [racon::Polisher::polish] generating consensus [==========> ] 4.519118 s [racon::Polisher::polish] generating consensus [===========> ] 5.295730 s [racon::Polisher::polish] generating consensus [============> ] 6.283781 s [racon::Polisher::polish] generating consensus [=============> ] 7.730762 s [racon::Polisher::polish] generating consensus [==============> ] 8.822764 s [racon::Polisher::polish] generating consensus [===============> ] 9.727824 s [racon::Polisher::polish] generating consensus [================> ] 10.467939 s [racon::Polisher::polish] generating consensus [=================> ] 11.363720 s [racon::Polisher::polish] generating consensus [==================> ] 11.931827 s [racon::Polisher::polish] generating consensus [===================>] 12.607684 s [racon::Polisher::polish] generating consensus [====================] 16.212128 s [racon::Polisher::] total = 17.028452 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (17041 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.001602 s [racon::Polisher::initialize] loaded sequences 0.086244 s [racon::Polisher::initialize] loaded overlaps 0.041650 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.014807 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.014847 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.014865 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.014882 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.014897 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.014913 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.014930 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.014947 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.014963 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.014980 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.014994 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015010 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.015026 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.015042 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.015119 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.015137 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.015152 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.015167 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.015181 s [racon::Polisher::initialize] aligning overlaps [====================] 0.015196 s [racon::Polisher::initialize] transformed data into windows 0.008223 s [racon::Polisher::polish] generating consensus [=> ] 0.544536 s [racon::Polisher::polish] generating consensus [==> ] 1.048678 s [racon::Polisher::polish] generating consensus [===> ] 1.479556 s [racon::Polisher::polish] generating consensus [====> ] 1.919606 s [racon::Polisher::polish] generating consensus [=====> ] 2.103593 s [racon::Polisher::polish] generating consensus [======> ] 2.284564 s [racon::Polisher::polish] generating consensus [=======> ] 2.476524 s [racon::Polisher::polish] generating consensus [========> ] 2.777708 s [racon::Polisher::polish] generating consensus [=========> ] 3.035562 s [racon::Polisher::polish] generating consensus [==========> ] 3.460567 s [racon::Polisher::polish] generating consensus [===========> ] 4.140551 s [racon::Polisher::polish] generating consensus [============> ] 4.748517 s [racon::Polisher::polish] generating consensus [=============> ] 6.000607 s [racon::Polisher::polish] generating consensus [==============> ] 7.147556 s [racon::Polisher::polish] generating consensus [===============> ] 8.271576 s [racon::Polisher::polish] generating consensus [================> ] 8.836481 s [racon::Polisher::polish] generating consensus [=================> ] 9.523732 s [racon::Polisher::polish] generating consensus [==================> ] 9.943563 s [racon::Polisher::polish] generating consensus [===================>] 10.339571 s [racon::Polisher::polish] generating consensus [====================] 12.414729 s [racon::Polisher::] total = 12.601222 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (12613 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.001602 s [racon::Polisher::initialize] loaded sequences 0.052619 s [racon::Polisher::initialize] loaded overlaps 0.043757 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.012727 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013073 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013280 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.013469 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.013782 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.013817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.013837 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.013857 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.013875 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.013890 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.013952 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.013971 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.013986 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.014001 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.014016 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.014030 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.014044 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.014060 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.014075 s [racon::Polisher::initialize] aligning overlaps [====================] 0.014090 s [racon::Polisher::initialize] transformed data into windows 0.001131 s [racon::Polisher::polish] generating consensus [=> ] 0.632658 s [racon::Polisher::polish] generating consensus [==> ] 1.405631 s [racon::Polisher::polish] generating consensus [===> ] 1.993628 s [racon::Polisher::polish] generating consensus [====> ] 2.553498 s [racon::Polisher::polish] generating consensus [=====> ] 2.868659 s [racon::Polisher::polish] generating consensus [======> ] 3.164670 s [racon::Polisher::polish] generating consensus [=======> ] 3.504666 s [racon::Polisher::polish] generating consensus [========> ] 3.860695 s [racon::Polisher::polish] generating consensus [=========> ] 4.469867 s [racon::Polisher::polish] generating consensus [==========> ] 4.888655 s [racon::Polisher::polish] generating consensus [===========> ] 5.649500 s [racon::Polisher::polish] generating consensus [============> ] 6.612679 s [racon::Polisher::polish] generating consensus [=============> ] 8.013484 s [racon::Polisher::polish] generating consensus [==============> ] 9.229621 s [racon::Polisher::polish] generating consensus [===============> ] 10.189253 s [racon::Polisher::polish] generating consensus [================> ] 11.066834 s [racon::Polisher::polish] generating consensus [=================> ] 11.853459 s [racon::Polisher::polish] generating consensus [==================> ] 12.345611 s [racon::Polisher::polish] generating consensus [===================>] 12.885548 s [racon::Polisher::polish] generating consensus [====================] 16.460722 s [racon::Polisher::] total = 16.597783 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (16612 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.001634 s [racon::Polisher::initialize] loaded sequences 0.087495 s [racon::Polisher::initialize] loaded overlaps 0.000739 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.107820 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.167794 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.211776 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.259369 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.291720 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.343817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.458796 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.490788 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.519521 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.543568 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.579512 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.667585 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.791424 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.811710 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.883711 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.887346 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.903399 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.914759 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.914789 s [racon::Polisher::initialize] aligning overlaps [====================] 0.936970 s [racon::Polisher::initialize] transformed data into windows 0.008294 s [racon::Polisher::polish] generating consensus [=> ] 2.002115 s [racon::Polisher::polish] generating consensus [==> ] 2.074002 s [racon::Polisher::polish] generating consensus [===> ] 4.998124 s [racon::Polisher::polish] generating consensus [====> ] 4.999149 s [racon::Polisher::polish] generating consensus [=====> ] 5.898242 s [racon::Polisher::polish] generating consensus [======> ] 5.899513 s [racon::Polisher::polish] generating consensus [=======> ] 7.141316 s [racon::Polisher::polish] generating consensus [========> ] 7.141385 s [racon::Polisher::polish] generating consensus [=========> ] 8.786169 s [racon::Polisher::polish] generating consensus [==========> ] 9.278188 s [racon::Polisher::polish] generating consensus [===========> ] 12.097318 s [racon::Polisher::polish] generating consensus [============> ] 13.042168 s [racon::Polisher::polish] generating consensus [=============> ] 18.237330 s [racon::Polisher::polish] generating consensus [==============> ] 18.909333 s [racon::Polisher::polish] generating consensus [===============> ] 21.522472 s [racon::Polisher::polish] generating consensus [================> ] 21.874405 s [racon::Polisher::polish] generating consensus [=================> ] 24.025320 s [racon::Polisher::polish] generating consensus [==================> ] 24.025380 s [racon::Polisher::polish] generating consensus [===================>] 25.778469 s [racon::Polisher::polish] generating consensus [====================] 29.870839 s [racon::Polisher::] total = 30.940662 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (30974 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.001566 s [racon::Polisher::initialize] loaded sequences 0.088618 s [racon::Polisher::initialize] loaded overlaps 0.000765 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.077805 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.109702 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.145189 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.177150 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.196704 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.220670 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.289507 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.325653 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.353626 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.381618 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.413707 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.444121 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.476391 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.497661 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.521566 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.585614 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.605728 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.629671 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.664111 s [racon::Polisher::initialize] aligning overlaps [====================] 0.700054 s [racon::Polisher::initialize] transformed data into windows 0.009524 s [racon::Polisher::polish] generating consensus [=> ] 0.613561 s [racon::Polisher::polish] generating consensus [==> ] 1.222592 s [racon::Polisher::polish] generating consensus [===> ] 1.597522 s [racon::Polisher::polish] generating consensus [====> ] 1.978630 s [racon::Polisher::polish] generating consensus [=====> ] 2.186589 s [racon::Polisher::polish] generating consensus [======> ] 2.422805 s [racon::Polisher::polish] generating consensus [=======> ] 2.643108 s [racon::Polisher::polish] generating consensus [========> ] 2.918798 s [racon::Polisher::polish] generating consensus [=========> ] 3.313528 s [racon::Polisher::polish] generating consensus [==========> ] 4.114840 s [racon::Polisher::polish] generating consensus [===========> ] 4.721539 s [racon::Polisher::polish] generating consensus [============> ] 5.350574 s [racon::Polisher::polish] generating consensus [=============> ] 6.374818 s [racon::Polisher::polish] generating consensus [==============> ] 7.190799 s [racon::Polisher::polish] generating consensus [===============> ] 7.962791 s [racon::Polisher::polish] generating consensus [================> ] 8.614875 s [racon::Polisher::polish] generating consensus [=================> ] 9.301529 s [racon::Polisher::polish] generating consensus [==================> ] 9.853522 s [racon::Polisher::polish] generating consensus [===================>] 10.441538 s [racon::Polisher::polish] generating consensus [====================] 12.677621 s [racon::Polisher::] total = 13.509469 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (13524 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.091635 s [racon::Polisher::initialize] loaded sequences 0.089752 s [racon::Polisher::initialize] loaded overlaps 0.024035 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.117880 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.170418 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.210289 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.238371 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.266351 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.295041 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.346673 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.378916 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.423034 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.454753 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.494604 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.550167 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.590125 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.634118 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.666098 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.694106 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.750989 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.751835 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.778579 s [racon::Polisher::initialize] aligning overlaps [====================] 0.813335 s [racon::Polisher::initialize] transformed data into windows 0.013653 s [racon::Polisher::polish] generating consensus [=> ] 0.355807 s [racon::Polisher::polish] generating consensus [==> ] 0.774434 s [racon::Polisher::polish] generating consensus [===> ] 1.138560 s [racon::Polisher::polish] generating consensus [====> ] 1.138896 s [racon::Polisher::polish] generating consensus [=====> ] 1.358569 s [racon::Polisher::polish] generating consensus [======> ] 1.514624 s [racon::Polisher::polish] generating consensus [=======> ] 1.738608 s [racon::Polisher::polish] generating consensus [========> ] 1.770697 s [racon::Polisher::polish] generating consensus [=========> ] 2.286410 s [racon::Polisher::polish] generating consensus [==========> ] 2.486381 s [racon::Polisher::polish] generating consensus [===========> ] 2.650525 s [racon::Polisher::polish] generating consensus [============> ] 2.710588 s [racon::Polisher::polish] generating consensus [=============> ] 2.906403 s [racon::Polisher::polish] generating consensus [==============> ] 2.906835 s [racon::Polisher::polish] generating consensus [===============> ] 3.354573 s [racon::Polisher::polish] generating consensus [================> ] 3.355203 s [racon::Polisher::polish] generating consensus [=================> ] 4.258621 s [racon::Polisher::polish] generating consensus [==================> ] 4.558550 s [racon::Polisher::polish] generating consensus [===================>] 4.896776 s [racon::Polisher::polish] generating consensus [====================] 4.968429 s [racon::Polisher::] total = 6.003688 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (6017 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.086284 s [racon::Polisher::initialize] loaded sequences 0.089497 s [racon::Polisher::initialize] loaded overlaps 0.024530 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.921280 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.589265 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.193266 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.925268 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.541278 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.977263 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.573256 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.322448 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.001267 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.701262 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.237245 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.005268 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.773264 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.405260 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.285280 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.073259 s [racon::Polisher::initialize] aligning overlaps [=================> ] 11.769255 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.537264 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.365508 s [racon::Polisher::initialize] aligning overlaps [====================] 13.977547 s [racon::Polisher::initialize] transformed data into windows 0.228121 s [racon::Polisher::polish] generating consensus [=> ] 17.947268 s [racon::Polisher::polish] generating consensus [==> ] 30.939003 s [racon::Polisher::polish] generating consensus [===> ] 45.303073 s [racon::Polisher::polish] generating consensus [====> ] 56.951075 s [racon::Polisher::polish] generating consensus [=====> ] 69.363023 s [racon::Polisher::polish] generating consensus [======> ] 84.591023 s [racon::Polisher::polish] generating consensus [=======> ] 99.879050 s [racon::Polisher::polish] generating consensus [========> ] 111.131269 s [racon::Polisher::polish] generating consensus [=========> ] 129.410971 s [racon::Polisher::polish] generating consensus [==========> ] 150.040052 s [racon::Polisher::polish] generating consensus [===========> ] 165.939080 s [racon::Polisher::polish] generating consensus [============> ] 183.408025 s [racon::Polisher::polish] generating consensus [=============> ] 199.575928 s [racon::Polisher::polish] generating consensus [==============> ] 217.514974 s [racon::Polisher::polish] generating consensus [===============> ] 236.907757 s [racon::Polisher::polish] generating consensus [================> ] 247.639883 s [racon::Polisher::polish] generating consensus [=================> ] 266.147833 s [racon::Polisher::polish] generating consensus [==================> ] 282.291069 s [racon::Polisher::polish] generating consensus [===================>] 301.782983 s [racon::Polisher::polish] generating consensus [====================] 315.825197 s [racon::Polisher::] total = 330.240084 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (330252 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.052479 s [racon::Polisher::initialize] loaded sequences 0.053325 s [racon::Polisher::initialize] loaded overlaps 0.025819 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.169636 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.789745 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.417868 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.141693 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.945809 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.389580 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.969557 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.972793 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.769752 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.653787 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.485580 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.489532 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.436989 s [racon::Polisher::initialize] aligning overlaps [==============> ] 11.157993 s [racon::Polisher::initialize] aligning overlaps [===============> ] 11.989747 s [racon::Polisher::initialize] aligning overlaps [================> ] 12.733640 s [racon::Polisher::initialize] aligning overlaps [=================> ] 13.493688 s [racon::Polisher::initialize] aligning overlaps [==================> ] 14.509725 s [racon::Polisher::initialize] aligning overlaps [===================>] 15.401725 s [racon::Polisher::initialize] aligning overlaps [====================] 16.026035 s [racon::Polisher::initialize] transformed data into windows 0.041727 s [racon::Polisher::polish] generating consensus [=> ] 25.416309 s [racon::Polisher::polish] generating consensus [==> ] 51.056783 s [racon::Polisher::polish] generating consensus [===> ] 73.972373 s [racon::Polisher::polish] generating consensus [====> ] 90.489415 s [racon::Polisher::polish] generating consensus [=====> ] 109.161222 s [racon::Polisher::polish] generating consensus [======> ] 133.918249 s [racon::Polisher::polish] generating consensus [=======> ] 163.497252 s [racon::Polisher::polish] generating consensus [========> ] 181.504293 s [racon::Polisher::polish] generating consensus [=========> ] 206.489350 s [racon::Polisher::polish] generating consensus [==========> ] 230.684349 s [racon::Polisher::polish] generating consensus [===========> ] 251.300396 s [racon::Polisher::polish] generating consensus [============> ] 272.100385 s [racon::Polisher::polish] generating consensus [=============> ] 291.724344 s [racon::Polisher::polish] generating consensus [==============> ] 312.144358 s [racon::Polisher::polish] generating consensus [===============> ] 332.648338 s [racon::Polisher::polish] generating consensus [================> ] 343.648370 s [racon::Polisher::polish] generating consensus [=================> ] 369.404323 s [racon::Polisher::polish] generating consensus [==================> ] 400.468382 s [racon::Polisher::polish] generating consensus [===================>] 422.441300 s [racon::Polisher::polish] generating consensus [====================] 443.040211 s [racon::Polisher::] total = 459.247004 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (459260 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.087689 s [racon::Polisher::initialize] loaded sequences 0.088896 s [racon::Polisher::initialize] loaded overlaps 0.022489 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.040333 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.952364 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.456624 s [racon::Polisher::initialize] aligning overlaps [====> ] 3.189422 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.833248 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.297172 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.924273 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.701221 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.549934 s [racon::Polisher::initialize] aligning overlaps [==========> ] 7.368588 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.952309 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.741162 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.537276 s [racon::Polisher::initialize] aligning overlaps [==============> ] 10.227487 s [racon::Polisher::initialize] aligning overlaps [===============> ] 11.207905 s [racon::Polisher::initialize] aligning overlaps [================> ] 12.061422 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.917420 s [racon::Polisher::initialize] aligning overlaps [==================> ] 13.864334 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.836306 s [racon::Polisher::initialize] aligning overlaps [====================] 15.528240 s [racon::Polisher::initialize] transformed data into windows 0.242680 s [racon::Polisher::polish] generating consensus [=> ] 27.633756 s [racon::Polisher::polish] generating consensus [==> ] 58.316333 s [racon::Polisher::polish] generating consensus [===> ] 93.601133 s [racon::Polisher::polish] generating consensus [====> ] 110.133695 s [racon::Polisher::polish] generating consensus [=====> ] 124.988679 s [racon::Polisher::polish] generating consensus [======> ] 149.525186 s [racon::Polisher::polish] generating consensus [=======> ] 177.449649 s [racon::Polisher::polish] generating consensus [========> ] 188.960727 s [racon::Polisher::polish] generating consensus [=========> ] 204.980692 s [racon::Polisher::polish] generating consensus [==========> ] 234.384793 s [racon::Polisher::polish] generating consensus [===========> ] 270.481274 s [racon::Polisher::polish] generating consensus [============> ] 301.697100 s [racon::Polisher::polish] generating consensus [=============> ] 336.509164 s [racon::Polisher::polish] generating consensus [==============> ] 359.089366 s [racon::Polisher::polish] generating consensus [===============> ] 387.684745 s [racon::Polisher::polish] generating consensus [================> ] 405.748727 s [racon::Polisher::polish] generating consensus [=================> ] 436.560736 s [racon::Polisher::polish] generating consensus [==================> ] 455.257754 s [racon::Polisher::polish] generating consensus [===================>] 470.700736 s [racon::Polisher::polish] generating consensus [====================] 481.727219 s [racon::Polisher::] total = 497.704261 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (497717 ms) [----------] 10 tests from RaconPolishingTest (1397279 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (1397296 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-arm-linux-gnueabihf' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dpkg-shlibdeps: warning: debian/racon/usr/bin/racon contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_armhf.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_armhf.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_armhf.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/11751/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/11751/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11751 and its subdirectories I: Current time: Wed Dec 4 21:14:07 +14 2024 I: pbuilder-time-stamp: 1733296447