I: pbuilder: network access will be disabled during build
I: Current time: Sat Mar 28 16:34:41 -12 2026
I: pbuilder-time-stamp: 1774758881
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [andi_0.14-3.dsc]
I: copying [./andi_0.14.orig.tar.gz]
I: copying [./andi_0.14-3.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: unsupported subcommand
dpkg-source: info: extracting andi in andi-0.14
dpkg-source: info: unpacking andi_0.14.orig.tar.gz
dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying remove-signedcompare-warning.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/116949/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='004efceb6a334be0b4c33c17fbb7d761'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='116949'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.aCklWnfB/pbuilderrc_RDkQ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.aCklWnfB/b1 --logfile b1/build.log andi_0.14-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos6-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/116949/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19791 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however:
Package libdivsufsort-dev is not installed.
pbuilder-satisfydepends-dummy depends on pkgconf; however:
Package pkgconf is not installed.
pbuilder-satisfydepends-dummy depends on libgsl-dev; however:
Package libgsl-dev is not installed.
pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however:
Package libglib2.0-dev is not installed.
pbuilder-satisfydepends-dummy depends on debhelper; however:
Package debhelper is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs
0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded.
Need to get 38.7 MB of archives. After unpacking 151 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 36 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 native-architecture all 0.2.5 [2204 B]
Get: 46 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.83.3-2 [1581 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libgirepository-2.0-0 i386 2.83.3-2 [146 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 girepository-tools i386 2.83.3-2 [155 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 uuid-dev i386 2.40.4-3 [47.9 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libblkid-dev i386 2.40.4-3 [228 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 libdivsufsort3 i386 2.0.1-6+b1 [50.0 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libdivsufsort-dev i386 2.0.1-6+b1 [19.1 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libffi-dev i386 3.4.7-1 [58.0 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libsepol-dev i386 3.8-1 [405 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 libpcre2-16-0 i386 10.45-1 [278 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 libpcre2-32-0 i386 10.45-1 [267 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 libpcre2-posix3 i386 10.45-1 [63.6 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 libpcre2-dev i386 10.45-1 [858 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 libselinux1-dev i386 3.7-3.1 [168 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libmount-dev i386 2.40.4-3 [29.4 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 libsysprof-capture-4-dev i386 48~beta-2 [52.6 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 libgio-2.0-dev i386 2.83.3-2 [1800 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 libgio-2.0-dev-bin i386 2.83.3-2 [165 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libglib2.0-data all 2.83.3-2 [1282 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 libglib2.0-bin i386 2.83.3-2 [131 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libglib2.0-dev-bin i386 2.83.3-2 [52.5 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 libglib2.0-dev i386 2.83.3-2 [53.3 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 libgslcblas0 i386 2.8+dfsg-5 [106 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 libgsl28 i386 2.8+dfsg-5 [978 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 libgsl-dev i386 2.8+dfsg-5 [1240 kB]
Fetched 38.7 MB in 0s (125 MB/s)
Preconfiguring packages ...
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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:i386 (8.2-6) ...
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Current default time zone: 'Etc/UTC'
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Reading package lists...
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-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes
dpkg-buildpackage: info: source package andi
dpkg-buildpackage: info: source version 0.14-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
configure.ac:11: installing './ar-lib'
configure.ac:6: installing './compile'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
parallel-tests: installing './test-driver'
libs/Makefile.am: installing './depcomp'
test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory,
test/Makefile.am:14: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least one source file is in a subdirectory, but the 'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding output
automake: object file(s) will be placed in the top-level directory. However, this
automake: behavior may change in a future Automake major version, with object
automake: files being placed in the same subdirectory as the corresponding sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibility.
test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory,
test/Makefile.am:14: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory,
test/Makefile.am:9: but option 'subdir-objects' is disabled
test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory,
test/Makefile.am:4: but option 'subdir-objects' is disabled
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/andi-0.14'
dh_auto_configure -- --enable-unit-tests --with-seed=123
./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking whether make supports the include directive... yes (GNU style)
checking dependency style of gcc... none
checking for g++... g++
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking whether make sets $(MAKE)... (cached) yes
checking how to run the C preprocessor... gcc -E
checking for ranlib... ranlib
checking for ar... ar
checking the archiver (ar) interface... ar
checking for g++ option to support OpenMP... -fopenmp
checking for gcc option to support OpenMP... -fopenmp
checking for cos in -lm... yes
checking for cblas_dgemm in -lgslcblas... yes
checking for gsl_ran_binomial in -lgsl... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for divsufsort.h... yes
checking for divsufsort in -ldivsufsort... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for glib-2.0... yes
checking whether g++ supports C++11 features by default... yes
checking for limits.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stdint.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for err.h... yes
checking for errno.h... yes
checking for fcntl.h... yes
checking for inline... inline
checking for size_t... yes
checking for ssize_t... yes
checking for int32_t... yes
checking for uint8_t... yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99 or later... yes
checking for floor... yes
checking for pow... yes
checking for sqrt... yes
checking for strdup... yes
checking for strerror... yes
checking for strndup... yes
checking for strcasecmp... yes
checking for strchr... yes
checking for strrchr... yes
checking for strchrnul... yes
checking for strtoul... yes
checking for strtod... yes
checking for reallocarray... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating docs/andi.1
config.status: creating docs/Makefile
config.status: creating libs/Makefile
config.status: creating opt/Makefile
config.status: creating src/Makefile
config.status: creating test/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/build/reproducible-path/andi-0.14'
dh_auto_build
make -j22
make[1]: Entering directory '/build/reproducible-path/andi-0.14'
Making all in .
make[2]: Entering directory '/build/reproducible-path/andi-0.14'
echo "Missing Git" > ChangeLog;
if test -d ./.git; then \
which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \
fi
make[2]: Leaving directory '/build/reproducible-path/andi-0.14'
Making all in libs
make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs'
gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c
rm -f libpfasta.a
ar cr libpfasta.a libpfasta_a-pfasta.o
ranlib libpfasta.a
make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs'
Making all in opt
make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt'
rm -f libcompat.a
ar cr libcompat.a
ranlib libcompat.a
make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt'
Making all in src
make[2]: Entering directory '/build/reproducible-path/andi-0.14/src'
make all-am
make[3]: Entering directory '/build/reproducible-path/andi-0.14/src'
gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c
gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c
gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-process.o `test -f 'process.c' || echo './'`process.c
gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-io.o `test -f 'io.c' || echo './'`io.c
gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o andi-model.o `test -f 'model.c' || echo './'`model.c
process.c: In function 'anchor':
process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter]
114 | const struct anchor *last_match,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm
make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src'
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Making all in docs
make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs'
make[2]: Nothing to be done for 'all'.
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Making all in test
make[2]: Entering directory '/build/reproducible-path/andi-0.14/test'
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c
gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c
gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c
g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_fasta.o test_fasta.cxx
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c
gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c
../src/process.c: In function 'anchor':
../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter]
114 | const struct anchor *last_match,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
../src/sequence.c: In function 'normalize':
../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas]
279 | #pragma omp atomic
test_esa.c: In function 'setup':
test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter]
46 | void setup( esa_fixture *ef, gconstpointer test_data){
| ~~~~~~~~~~~~~~^~~~~~~~~
test_esa.c: In function 'setup2':
test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter]
71 | void setup2( esa_fixture *ef, gconstpointer test_data){
| ~~~~~~~~~~~~~~^~~~~~~~~
test_esa.c: In function 'teardown':
test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter]
97 | void teardown( esa_fixture *ef, gconstpointer test_data){
| ~~~~~~~~~~~~~~^~~~~~~~~
test_esa.c: In function 'basic':
test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter]
107 | void basic( esa_fixture *ef, gconstpointer test_data){
| ~~~~~~~~~~~~~~^~~~~~~~~
test_esa.c: In function 'normq_cached':
test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter]
134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){
| ~~~~~~~~~~~~~~^~~~~~~~~
test_esa.c: In function 'prefix':
test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter]
176 | void prefix( esa_fixture *ef, gconstpointer test_data){
| ~~~~~~~~~~~~~~^~~~~~~~~
gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm
gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm
gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm
g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm
make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test'
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dh_auto_test
make -j22 check "TESTSUITEFLAGS=-j22 --verbose" VERBOSE=1
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Making check in .
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make check-TESTS
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make[4]: Entering directory '/build/reproducible-path/andi-0.14'
PASS: test/test_seq
PASS: test/test_process
PASS: test/nan.sh
PASS: test/low_homo.sh
PASS: test/test_join.sh
PASS: test/test_extra.sh
PASS: test/test_esa
PASS: test/test_random.sh
============================================================================
Testsuite summary for andi 0.14
============================================================================
# TOTAL: 8
# PASS: 8
# SKIP: 0
# XFAIL: 0
# FAIL: 0
# XPASS: 0
# ERROR: 0
============================================================================
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Making check in libs
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Making check in opt
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Making check in test
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make test_esa test_seq test_fasta test_process
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create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/andi/
make -j22 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/andi-0.14'
Making install in .
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/usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi'
/usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi'
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Making install in libs
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Making install in opt
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make[3]: Nothing to be done for 'install-data-am'.
/usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin'
/usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin'
make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src'
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Making install in docs
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/usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1'
/usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1'
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Making install in test
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dh_installdocs
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dh_installman
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dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'andi' in '../andi_0.14-3_i386.deb'.
dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_i386.deb'.
dpkg-genbuildinfo --build=binary -O../andi_0.14-3_i386.buildinfo
dpkg-genchanges --build=binary -O../andi_0.14-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/116949 and its subdirectories
I: Current time: Sat Mar 28 16:35:39 -12 2026
I: pbuilder-time-stamp: 1774758939