I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 27 02:41:23 -12 2026
I: pbuilder-time-stamp: 1772203283
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [libbio-tools-phylo-paml-perl_1.7.3-4.dsc]
I: copying [./libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz]
I: copying [./libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libbio-tools-phylo-paml-perl_1.7.3-4.dsc: unsupported subcommand
dpkg-source: info: extracting libbio-tools-phylo-paml-perl in libbio-tools-phylo-paml-perl-1.7.3
dpkg-source: info: unpacking libbio-tools-phylo-paml-perl_1.7.3.orig.tar.gz
dpkg-source: info: unpacking libbio-tools-phylo-paml-perl_1.7.3-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying evolver-program-name.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/21526/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='7ad6647283f148c3a9259c4f0a85e25a'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='21526'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NDxlqY1T/pbuilderrc_4hHJ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NDxlqY1T/b1 --logfile b1/build.log libbio-tools-phylo-paml-perl_1.7.3-4.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://213.165.73.152:3128'
I: uname -a
Linux ionos16-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/21526/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libbio-perl-perl, libbio-perl-run-perl, libdevel-checkbin-perl, libio-string-perl, paml, perl
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19842 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however:
Package libbio-perl-perl is not installed.
pbuilder-satisfydepends-dummy depends on libbio-perl-run-perl; however:
Package libbio-perl-run-perl is not installed.
pbuilder-satisfydepends-dummy depends on libdevel-checkbin-perl; however:
Package libdevel-checkbin-perl is not installed.
pbuilder-satisfydepends-dummy depends on libio-string-perl; however:
Package libio-string-perl is not installed.
pbuilder-satisfydepends-dummy depends on paml; however:
Package paml is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-perl-run-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-checkbin-perl{a} libelf1t64{a} libfile-sort-perl{a} libfile-stripnondeterminism-perl{a} libicu72{a} libio-pty-perl{a} libio-string-perl{a} libipc-run-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} paml{a} po-debconf{a} sensible-utils{a}
The following packages are RECOMMENDED but will NOT be installed:
curl libace-perl libalgorithm-diff-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl liburi-perl libwww-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-parser-perl libxml-perl libxml-sax-perl libxml-sax-writer-perl libxml-simple-perl libxml-twig-perl libxml-writer-perl lynx perl-tk wget
0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded.
Need to get 25.0 MB of archives. After unpacking 92.6 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-4 [201 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-4 [723 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.23 [90.6 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-2 [539 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 22 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-4 [1632 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 debhelper all 13.23 [919 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 libio-string-perl all 1.08-4 [12.1 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libdata-stag-perl all 0.14-3 [448 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 libbio-perl-perl all 1.7.8-1 [2603 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 libio-pty-perl i386 1:1.20-1+b3 [35.8 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libipc-run-perl all 20231003.0-2 [101 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 libfile-sort-perl all 1.01-3 [21.3 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 libbio-perl-run-perl all 1.7.3-13 [528 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 libdevel-checkbin-perl all 0.04-3 [5228 B]
Get: 39 http://deb.debian.org/debian trixie/main i386 paml i386 4.9j+dfsg-5 [639 kB]
Fetched 25.0 MB in 1s (36.6 MB/s)
Preconfiguring packages ...
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Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up groff-base (1.23.0-7) ...
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Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.40-5) ...
Reading package lists...
Building dependency tree...
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Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-tools-phylo-paml-perl_1.7.3-4_source.changes
dpkg-buildpackage: info: source package libbio-tools-phylo-paml-perl
dpkg-buildpackage: info: source version 1.7.3-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Jelmer Vernooij <jelmer@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=i686-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Warning: prerequisite Bio::Tools::Run::Alignment::Clustalw 0 not found.
Warning: prerequisite Bio::Tools::Run::Alignment::TCoffee 0 not found.
Locating bin:basemlg... found at /usr/bin/basemlg.
Locating bin:codeml... found at /usr/bin/codeml.
Locating bin:paml-evolver... found at /usr/bin/paml-evolver.
Locating bin:yn00... found at /usr/bin/yn00.
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for Bio::Tools::Phylo::PAML
Writing MYMETA.yml and MYMETA.json
dh_auto_build
make -j22
make[1]: Entering directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
cp lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Baseml.pm
cp lib/Bio/Tools/Phylo/PAML/ModelResult.pm blib/lib/Bio/Tools/Phylo/PAML/ModelResult.pm
cp lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
cp lib/Bio/Tools/Phylo/PAML.pm blib/lib/Bio/Tools/Phylo/PAML.pm
cp lib/Bio/Tools/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Phylo/PAML/Codeml.pm
cp lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Evolver.pm
cp lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
cp lib/Bio/Tools/Phylo/PAML/Result.pm blib/lib/Bio/Tools/Phylo/PAML/Result.pm
cp bin/bp_pairwise_kaks blib/script/bp_pairwise_kaks
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/bp_pairwise_kaks
Manifying 1 pod document
Manifying 8 pod documents
make[1]: Leaving directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
dh_auto_test
make -j22 test TEST_VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/00-compile.t ...........
1..9
ok 1 - Bio/Tools/Phylo/PAML.pm loaded ok
ok 2 - Bio/Tools/Phylo/PAML/Codeml.pm loaded ok
ok 3 - Bio/Tools/Phylo/PAML/ModelResult.pm loaded ok
ok 4 - Bio/Tools/Phylo/PAML/Result.pm loaded ok
ok 5 - Bio/Tools/Run/Phylo/PAML/Baseml.pm loaded ok
ok 6 - Bio/Tools/Run/Phylo/PAML/Codeml.pm loaded ok
ok 7 - Bio/Tools/Run/Phylo/PAML/Evolver.pm loaded ok
ok 8 - Bio/Tools/Run/Phylo/PAML/Yn00.pm loaded ok
ok 9 # skip bin/bp_pairwise_kaks isn't perl
ok
t/author-eol.t ........... skipped: these tests are for testing by the author
t/author-mojibake.t ...... skipped: these tests are for testing by the author
t/author-no-tabs.t ....... skipped: these tests are for testing by the author
t/author-pod-coverage.t .. skipped: these tests are for testing by the author
t/author-pod-syntax.t .... skipped: these tests are for testing by the author
t/PAML-parser.t ..........
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
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ok 162 - node\#8 reconstructed seq
ok 163 - ancestral AA
ok 164 - ancestral AA
ok 165 - derived AA
ok 166 - ancestral AA
ok 167 - ancestral AA
ok 168 - derived AA
ok 169 - derived AA
ok 170
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ok 203 - codeml 4.3 runmode=-2
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ok 214 - codeml 4.3 two NSSites models
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ok 238 - NEB positively selected sites
ok 239
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ok 250 - bug 3040
ok 251 - bug 3365
ok 252 - bug 3366
ok 253 - bug 3367
ok 254 - bug 3332
ok 255 - bug 3331
1..255
ok
t/PAML-run.t .............
ok 1
ok 2
ok 3 - got results
ok 4 - got a result
ok 5
ok 6
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ok 13
ok 14 - got results
ok 15 - got a result
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ok 28 - got results
ok 29
1..29
ok
All tests successful.
Files=8, Tests=293, 2 wallclock secs ( 0.08 usr 0.00 sys + 2.04 cusr 0.14 csys = 2.26 CPU)
Result: PASS
make[1]: Leaving directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install --destdir=debian/libbio-tools-phylo-paml-perl/
make -j22 install DESTDIR=/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
Manifying 1 pod document
Manifying 8 pod documents
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Yn00.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Evolver.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Codeml.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Run/Phylo/PAML/Baseml.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/ModelResult.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Result.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/perl5/Bio/Tools/Phylo/PAML/Codeml.pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man1/bp_pairwise_kaks.1p
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Codeml.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Codeml.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Baseml.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::ModelResult.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Phylo::PAML::Result.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Evolver.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/share/man/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3pm
Installing /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks
make[1]: Leaving directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
dh_install
sed -i '1s|^#!/usr/bin/env perl|#!/usr/bin/perl|' /build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3/debian/libbio-tools-phylo-paml-perl/usr/bin/bp_pairwise_kaks
make[1]: Leaving directory '/build/reproducible-path/libbio-tools-phylo-paml-perl-1.7.3'
dh_installdocs
dh_installchangelogs
dh_installman
dh_lintian
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_installdeb
dh_gencontrol
dh_md5sums
dh_builddeb
dpkg-deb: building package 'libbio-tools-phylo-paml-perl' in '../libbio-tools-phylo-paml-perl_1.7.3-4_all.deb'.
dpkg-genbuildinfo --build=binary -O../libbio-tools-phylo-paml-perl_1.7.3-4_i386.buildinfo
dpkg-genchanges --build=binary -O../libbio-tools-phylo-paml-perl_1.7.3-4_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/21526 and its subdirectories
I: Current time: Fri Feb 27 02:41:50 -12 2026
I: pbuilder-time-stamp: 1772203310