I: pbuilder: network access will be disabled during build I: Current time: Mon Mar 23 04:05:02 +14 2026 I: pbuilder-time-stamp: 1774188302 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [libslow5lib_0.7.0+dfsg-3.dsc] I: copying [./libslow5lib_0.7.0+dfsg.orig.tar.xz] I: copying [./libslow5lib_0.7.0+dfsg-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./libslow5lib_0.7.0+dfsg-3.dsc: unsupported subcommand dpkg-source: info: extracting libslow5lib in libslow5lib-0.7.0+dfsg dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg.orig.tar.xz dpkg-source: info: unpacking libslow5lib_0.7.0+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_streamvbyte.patch dpkg-source: info: applying enable_shared_and_static.patch dpkg-source: info: applying fix-baseline.patch dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/43316/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 22 14:05 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/43316/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/43316/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=8a74da979adb4344891d77e4c19fae9c LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=43316 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.IuV4gvxB/pbuilderrc_DTP4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.IuV4gvxB/b2 --logfile b2/build.log libslow5lib_0.7.0+dfsg-3.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/43316/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13), cmake, d-shlibs (>= 0.106~), dh-python, python3-all-dev, libstreamvbyte-dev, libzstd-dev, zlib1g-dev, cython3, python3-setuptools, python3-numpy, python3-wheel dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.106~); however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libstreamvbyte-dev; however: Package libstreamvbyte-dev is not installed. pbuilder-satisfydepends-dummy depends on libzstd-dev; however: Package libzstd-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} cython3{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstreamvbyte-dev{a} libstreamvbyte0{a} libtasn1-6{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 116 newly installed, 0 to remove and 0 not upgraded. Need to get 84.6 MB of archives. After unpacking 340 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.9-1 [816 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.9-1 [2238 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-7 [876 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.31.5-2 [2267 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 43 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.12.0+git20250209.89ed161+ds-1 [398 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 librhash1 i386 1.4.5-1 [144 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 cmake i386 3.31.5-2 [13.1 MB] Get: 62 http://deb.debian.org/debian trixie/main i386 cython3 i386 3.0.11+dfsg-2 [3020 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 d-shlibs all 0.109 [11.1 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 70 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.6.0-1 [720 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libexpat1-dev i386 2.6.4-1 [165 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-16 [735 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libpython3.13 i386 3.13.2-1 [2199 kB] Get: 99 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 100 http://deb.debian.org/debian trixie/main i386 libpython3.13-dev i386 3.13.2-1 [5181 kB] Get: 101 http://deb.debian.org/debian trixie/main i386 libpython3-dev i386 3.13.1-2 [10.2 kB] Get: 102 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.9-1 [1972 kB] Get: 103 http://deb.debian.org/debian trixie/main i386 libpython3.12t64 i386 3.12.9-1 [2172 kB] Get: 104 http://deb.debian.org/debian trixie/main i386 libpython3.12-dev i386 3.12.9-1 [5283 kB] Get: 105 http://deb.debian.org/debian trixie/main i386 libpython3-all-dev i386 3.13.1-2 [1072 B] Get: 106 http://deb.debian.org/debian trixie/main i386 libstreamvbyte0 i386 0.4.1-4+b1 [6096 B] Get: 107 http://deb.debian.org/debian trixie/main i386 libstreamvbyte-dev i386 0.4.1-4+b1 [6864 B] Get: 108 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-2 [354 kB] Get: 109 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.9-1 [681 kB] Get: 110 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.1-2 [1052 B] Get: 111 http://deb.debian.org/debian trixie/main i386 python3.13-dev i386 3.13.2-1 [505 kB] Get: 112 http://deb.debian.org/debian trixie/main i386 python3-dev i386 3.13.1-2 [26.1 kB] Get: 113 http://deb.debian.org/debian trixie/main i386 python3.12-dev i386 3.12.9-1 [505 kB] Get: 114 http://deb.debian.org/debian trixie/main i386 python3-all-dev i386 3.13.1-2 [1076 B] Get: 115 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB] Get: 116 http://deb.debian.org/debian trixie/main i386 python3-wheel all 0.45.1-1 [56.7 kB] Fetched 84.6 MB in 2s (34.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... 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Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. 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Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../083-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package libpython3.13:i386. Preparing to unpack .../084-libpython3.13_3.13.2-1_i386.deb ... Unpacking libpython3.13:i386 (3.13.2-1) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../085-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.13-dev:i386. Preparing to unpack .../086-libpython3.13-dev_3.13.2-1_i386.deb ... Unpacking libpython3.13-dev:i386 (3.13.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../087-libpython3-dev_3.13.1-2_i386.deb ... Unpacking libpython3-dev:i386 (3.13.1-2) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../088-libpython3.12-stdlib_3.12.9-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.9-1) ... Selecting previously unselected package libpython3.12t64:i386. Preparing to unpack .../089-libpython3.12t64_3.12.9-1_i386.deb ... Unpacking libpython3.12t64:i386 (3.12.9-1) ... Selecting previously unselected package libpython3.12-dev:i386. Preparing to unpack .../090-libpython3.12-dev_3.12.9-1_i386.deb ... Unpacking libpython3.12-dev:i386 (3.12.9-1) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../091-libpython3-all-dev_3.13.1-2_i386.deb ... Unpacking libpython3-all-dev:i386 (3.13.1-2) ... Selecting previously unselected package libstreamvbyte0:i386. Preparing to unpack .../092-libstreamvbyte0_0.4.1-4+b1_i386.deb ... Unpacking libstreamvbyte0:i386 (0.4.1-4+b1) ... Selecting previously unselected package libstreamvbyte-dev:i386. Preparing to unpack .../093-libstreamvbyte-dev_0.4.1-4+b1_i386.deb ... Unpacking libstreamvbyte-dev:i386 (0.4.1-4+b1) ... Selecting previously unselected package libzstd-dev:i386. Preparing to unpack .../094-libzstd-dev_1.5.6+dfsg-2_i386.deb ... Unpacking libzstd-dev:i386 (1.5.6+dfsg-2) ... Selecting previously unselected package python3.12. Preparing to unpack .../095-python3.12_3.12.9-1_i386.deb ... Unpacking python3.12 (3.12.9-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../096-python3-all_3.13.1-2_i386.deb ... Unpacking python3-all (3.13.1-2) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../097-python3.13-dev_3.13.2-1_i386.deb ... Unpacking python3.13-dev (3.13.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../098-python3-dev_3.13.1-2_i386.deb ... Unpacking python3-dev (3.13.1-2) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../099-python3.12-dev_3.12.9-1_i386.deb ... Unpacking python3.12-dev (3.12.9-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../100-python3-all-dev_3.13.1-2_i386.deb ... Unpacking python3-all-dev (3.13.1-2) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../101-python3-numpy_1%3a1.26.4+ds-13_i386.deb ... Unpacking python3-numpy (1:1.26.4+ds-13) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../102-python3-wheel_0.45.1-1_all.deb ... Unpacking python3-wheel (0.45.1-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libstreamvbyte0:i386 (0.4.1-4+b1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libicu72:i386 (72.1-6) ... Setting up libzstd-dev:i386 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libuv1t64:i386 (1.50.0-2) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:i386 (3.12.9-1) ... Setting up libnghttp2-14:i386 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:i386 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-4) ... Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8+b1) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Mar 22 14:06:18 UTC 2026. Universal Time is now: Sun Mar 22 14:06:18 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.6.4-1) ... Setting up libjsoncpp26:i386 (1.9.6-3) ... Setting up libstreamvbyte-dev:i386 (0.4.1-4+b1) ... Setting up libproc2-0:i386 (2:4.0.4-7) ... Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up d-shlibs (0.109) ... Setting up libk5crypto3:i386 (1.21.3-4) ... Setting up libsasl2-2:i386 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:i386 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:i386 (4.20.0-2) ... Setting up netbase (6.4) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:i386 (1.4.5-1) ... Setting up libkrb5-3:i386 (1.21.3-4) ... Setting up libssh2-1t64:i386 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:i386 (2.6.9+dfsg-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up libidn2-0:i386 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:i386 (0.25.5-3) ... Setting up libgssapi-krb5-2:i386 (1.21.3-4) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:i386 (3.7.4-1.1) ... Setting up libpython3.13-stdlib:i386 (3.13.2-1) ... Setting up libpython3-stdlib:i386 (3.13.1-2) ... Setting up libpython3.13:i386 (3.13.2-1) ... Setting up libgnutls30t64:i386 (3.8.9-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-wheel (0.45.1-1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libpython3.13-dev:i386 (3.13.2-1) ... Setting up cython3 (3.0.11+dfsg-2) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up libpython3-dev:i386 (3.13.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:i386 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up libcurl4t64:i386 (8.12.0+git20250209.89ed161+ds-1) ... Setting up python3.13-dev (3.13.2-1) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up libpython3.12t64:i386 (3.12.9-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.1-2) ... Setting up cmake (3.31.5-2) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libpython3.12-dev:i386 (3.12.9-1) ... Setting up libpython3-all-dev:i386 (3.13.1-2) ... Setting up python3.12-dev (3.12.9-1) ... Setting up dh-python (6.20250108) ... Setting up python3-all-dev (3.13.1-2) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/43316/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/43316/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libslow5lib_0.7.0+dfsg-3_source.changes dpkg-buildpackage: info: source package libslow5lib dpkg-buildpackage: info: source version 0.7.0+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --with python3 --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_configure -- \ -DSLOW5_USE_ZSTD="ON" cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DSLOW5_USE_ZSTD=ON .. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (4.0s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu dh_auto_configure --buildsystem=pybuild I: pybuild base:311: dh_auto_configure --buildsystem=cmake --builddirectory=/build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.12_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 cd .pybuild/cpython3_3.12_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.12 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.12 -DPython_EXECUTABLE=/usr/bin/python3.12 -DPython_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython_INCLUDE_DIR=/usr/include/python3.12 -DPython3_EXECUTABLE=/usr/bin/python3.12 -DPython3_LIBRARY=/usr/lib/python3.12/config-3.12-i386-linux-gnu/libpython3.12.so -DPython3_INCLUDE_DIR=/usr/include/python3.12 ../../.. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.12_slow5/build I: pybuild base:311: dh_auto_configure --buildsystem=cmake --builddirectory=/build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.13_slow5/build -- -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-i386-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-i386-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-i386-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13 cd .pybuild/cpython3_3.13_slow5/build && PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.13 -DPYTHON_LIBRARY:FILEPATH=/usr/lib/python3.13/config-3.13-i386-linux-gnu/libpython3.13.so -DPYTHON_INCLUDE_DIR:PATH=/usr/include/python3.13 -DPython_EXECUTABLE=/usr/bin/python3.13 -DPython_LIBRARY=/usr/lib/python3.13/config-3.13-i386-linux-gnu/libpython3.13.so -DPython_INCLUDE_DIR=/usr/include/python3.13 -DPython3_EXECUTABLE=/usr/bin/python3.13 -DPython3_LIBRARY=/usr/lib/python3.13/config-3.13-i386-linux-gnu/libpython3.13.so -DPython3_INCLUDE_DIR=/usr/include/python3.13 ../../.. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_FIND_USE_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PYTHON_EXECUTABLE PYTHON_INCLUDE_DIR PYTHON_LIBRARY Python3_EXECUTABLE Python3_INCLUDE_DIR Python3_LIBRARY Python_EXECUTABLE Python_INCLUDE_DIR Python_LIBRARY -- Build files have been written to: /build/reproducible-path/libslow5lib-0.7.0+dfsg/.pybuild/cpython3_3.13_slow5/build make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_auto_build cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles 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'/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' cd /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles/slow5_static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/slow5_static.dir/build.make CMakeFiles/slow5_static.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/slow5.dir/build.make CMakeFiles/slow5.dir/build make[4]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [ 10%] Building C object CMakeFiles/slow5_static.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5.c.o -MF CMakeFiles/slow5_static.dir/src/slow5.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c [ 20%] Building C object CMakeFiles/slow5.dir/src/slow5_misc.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_misc.c.o -MF CMakeFiles/slow5.dir/src/slow5_misc.c.o.d -o CMakeFiles/slow5.dir/src/slow5_misc.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_misc.c [ 30%] Building C object CMakeFiles/slow5_static.dir/src/slow5_idx.c.o [ 40%] Building C object CMakeFiles/slow5.dir/src/slow5.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_idx.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_idx.c [ 50%] Building C object CMakeFiles/slow5.dir/src/slow5_idx.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5.c.o -MF CMakeFiles/slow5.dir/src/slow5.c.o.d -o CMakeFiles/slow5.dir/src/slow5.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c /usr/bin/cc -D_GLIBCXX_DEBUG -Dslow5_EXPORTS -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_idx.c.o -MF 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-ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -fPIC -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5.dir/src/slow5_press.c.o -MF CMakeFiles/slow5.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c [ 80%] Building C object CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/cc -D_GLIBCXX_DEBUG -I/build/reproducible-path/libslow5lib-0.7.0+dfsg/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -DSLOW5_USE_ZSTD -MD -MT CMakeFiles/slow5_static.dir/src/slow5_press.c.o -MF CMakeFiles/slow5_static.dir/src/slow5_press.c.o.d -o CMakeFiles/slow5_static.dir/src/slow5_press.c.o -c /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5_press.c In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ In file included from /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5.h:55, from /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:40: /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_get_mem’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c: In function ‘slow5_rec_aux_parse’: /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ /build/reproducible-path/libslow5lib-0.7.0+dfsg/src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ [ 90%] Linking C static library libslow5_static.a /usr/bin/cmake -P CMakeFiles/slow5_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5_static.dir/link.txt --verbose=1 /usr/bin/ar qc libslow5_static.a CMakeFiles/slow5_static.dir/src/slow5.c.o CMakeFiles/slow5_static.dir/src/slow5_idx.c.o CMakeFiles/slow5_static.dir/src/slow5_misc.c.o CMakeFiles/slow5_static.dir/src/slow5_press.c.o /usr/bin/ranlib libslow5_static.a make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [ 90%] Built target slow5_static [100%] Linking C shared library libslow5.so /usr/bin/cmake -E cmake_link_script CMakeFiles/slow5.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -Wall -O2 -std=c99 -Wl,--dependency-file=CMakeFiles/slow5.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libslow5.so.0 -o libslow5.so.0 CMakeFiles/slow5.dir/src/slow5.c.o CMakeFiles/slow5.dir/src/slow5_idx.c.o CMakeFiles/slow5.dir/src/slow5_misc.c.o CMakeFiles/slow5.dir/src/slow5_press.c.o -lzstd /usr/bin/cmake -E cmake_symlink_library libslow5.so.0 libslow5.so.0 libslow5.so make[4]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' [100%] Built target slow5 make[3]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' for py in `py3versions -s`; do \ $py setup.py build; \ done /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext Compiling python/pyslow5.pyx because it changed. [1/1] Cythonizing python/pyslow5.pyx building 'pyslow5' extension creating build/temp.linux-x86_64-cpython-312/python creating build/temp.linux-x86_64-cpython-312/src i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/pyslow5.c -o build/temp.linux-x86_64-cpython-312/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from python/pyslow5.c:1294: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:46426:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 46426 | if (__pyx_t_5) { | ^ python/pyslow5.c:42930:8: note: ‘__pyx_v_ret’ was declared here 42930 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:42319:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 42319 | if (__pyx_t_7) { | ^ python/pyslow5.c:40075:8: note: ‘__pyx_v_ret’ was declared here 40075 | long __pyx_v_ret; | ^~~~~~~~~~~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c python/slow5threads.c -o build/temp.linux-x86_64-cpython-312/python/slow5threads.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5.c -o build/temp.linux-x86_64-cpython-312/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_idx.c -o build/temp.linux-x86_64-cpython-312/src/slow5_idx.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_misc.c -o build/temp.linux-x86_64-cpython-312/src/slow5_misc.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.12 -c src/slow5_press.c -o build/temp.linux-x86_64-cpython-312/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ creating build/lib.linux-x86_64-cpython-312 i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-312/python/pyslow5.o build/temp.linux-x86_64-cpython-312/python/slow5threads.o build/temp.linux-x86_64-cpython-312/src/slow5.o build/temp.linux-x86_64-cpython-312/src/slow5_idx.o build/temp.linux-x86_64-cpython-312/src/slow5_misc.o build/temp.linux-x86_64-cpython-312/src/slow5_press.o -L. -L/usr/lib/i386-linux-gnu -lm -lz -lstreamvbyte -o build/lib.linux-x86_64-cpython-312/pyslow5.cpython-312-i386-linux-gnu.so /usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) running build running build_ext building 'pyslow5' extension creating build/temp.linux-x86_64-cpython-313/python creating build/temp.linux-x86_64-cpython-313/src i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c python/pyslow5.c -o build/temp.linux-x86_64-cpython-313/python/pyslow5.o -g -Wall -O2 -std=c99 In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1929, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:5, from python/pyslow5.c:1294: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_60write_record’: python/pyslow5.c:42319:10: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 42319 | if (__pyx_t_7) { | ^ python/pyslow5.c:40075:8: note: ‘__pyx_v_ret’ was declared here 40075 | long __pyx_v_ret; | ^~~~~~~~~~~ python/pyslow5.c: In function ‘__pyx_pf_7pyslow5_4Open_62write_record_batch’: python/pyslow5.c:46426:14: warning: ‘__pyx_v_ret’ may be used uninitialized [-Wmaybe-uninitialized] 46426 | if (__pyx_t_5) { | ^ python/pyslow5.c:42930:8: note: ‘__pyx_v_ret’ was declared here 42930 | long __pyx_v_ret; | ^~~~~~~~~~~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c python/slow5threads.c -o build/temp.linux-x86_64-cpython-313/python/slow5threads.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5.c -o build/temp.linux-x86_64-cpython-313/src/slow5.o -g -Wall -O2 -std=c99 src/slow5.c: In function ‘slow5_init’: src/slow5.c:191:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 191 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_init_empty’: src/slow5.c:265:51: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if ((s5p->meta.start_rec_offset = ftello(fp)) == -1) { | ^~ src/slow5.c: In function ‘slow5_get_mem’: src/slow5.c:2460:49: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2460 | if (pread(s5p->meta.fd, mem, bytes, offset) != bytes) { | ^~ In file included from include/slow5/slow5.h:55, from src/slow5.c:40: include/slow5/slow5_error.h:80:28: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 5 has type ‘off_t’ {aka ‘long int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:2461:9: note: in expansion of macro ‘SLOW5_ERROR’ 2461 | SLOW5_ERROR("Failed to pread '%zu' bytes at offset '%zu' from slow5 file '%s'.", | ^~~~~~~~~~~ src/slow5.c: In function ‘slow5_rec_aux_parse’: include/slow5/slow5_error.h:80:28: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 80 | #define SLOW5_ERROR_PREFIX "[%s::ERROR]\033[1;31m " | ^~~~~~~~~~~~~~~~~~~~~~~~ include/slow5/slow5_error.h:117:25: note: in expansion of macro ‘SLOW5_ERROR_PREFIX’ 117 | fprintf(stderr, SLOW5_ERROR_PREFIX msg SLOW5_NO_COLOUR \ | ^~~~~~~~~~~~~~~~~~ src/slow5.c:3083:17: note: in expansion of macro ‘SLOW5_ERROR’ 3083 | SLOW5_ERROR("Auxiliary field '%s' is missing in record. At offset '%" PRIu64 "' and record size is '%" PRIu64 "'.", aux_meta->attrs[i], offset, read_size); | ^~~~~~~~~~~ i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5_idx.c -o build/temp.linux-x86_64-cpython-313/src/slow5_idx.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5_misc.c -o build/temp.linux-x86_64-cpython-313/src/slow5_misc.o -g -Wall -O2 -std=c99 i686-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Iinclude/ -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.13 -c src/slow5_press.c -o build/temp.linux-x86_64-cpython-313/src/slow5_press.o -g -Wall -O2 -std=c99 src/slow5_press.c: In function ‘slow5_fwrite_compress’: src/slow5_press.c:558:27: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 558 | if (bytes != size * nmemb || ferror(fp)) { | ^~ src/slow5_press.c:559:31: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 559 | if (bytes != size * nmemb) { | ^~ src/slow5_press.c: In function ‘slow5_pread_depress_solo’: src/slow5_press.c:686:47: warning: comparison of integer expressions of different signedness: ‘ssize_t’ {aka ‘int’} and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 686 | if ((ret = pread(fd, raw, count, offset)) != count) { | ^~ creating build/lib.linux-x86_64-cpython-313 i686-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-cpython-313/python/pyslow5.o build/temp.linux-x86_64-cpython-313/python/slow5threads.o build/temp.linux-x86_64-cpython-313/src/slow5.o build/temp.linux-x86_64-cpython-313/src/slow5_idx.o build/temp.linux-x86_64-cpython-313/src/slow5_misc.o build/temp.linux-x86_64-cpython-313/src/slow5_press.o -L. -L/usr/lib/i386-linux-gnu -lm -lz -lstreamvbyte -o build/lib.linux-x86_64-cpython-313/pyslow5.cpython-313-i386-linux-gnu.so make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' mkdir -p lib cp -a obj-i686-linux-gnu/libslow5_static.a lib/libslow5.a /usr/bin/make -C test zstd=1 make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/test' mkdir bin cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ endian_test.c -o bin/endian_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_helpers.c -o bin/unit_test_helpers -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_press.c -o bin/unit_test_press -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_ascii.c -o bin/unit_test_ascii -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_binary.c -o bin/unit_test_binary -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ convert_slow5_test.c -o bin/convert_slow5_test -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_two_rg.c -o bin/unit_test_two_rg -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_lossless.c -o bin/unit_test_lossless -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_empty.c -o bin/unit_test_empty -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libslow5lib-0.7.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -Werror -std=gnu99 -DSLOW5_USE_ZSTD -Wdate-time -D_FORTIFY_SOURCE=2 -I ../include/ -I ../src/ unit_test_enum.c -o bin/unit_test_enum -Wl,-z,relro -Wl,-z,now ../lib/libslow5.a -lm -lz -lstreamvbyte -lzstd make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/test' for pys in `py3versions -s`; do \ echo $pys; \ pydir=`$pys debian/get-pyver-dir.py`; \ echo $pydir; X=0; \ PYTHONPATH=`pwd`/build/$pydir $pys -m unittest -v python/test.py || X=$?; \ if [ "" != 0 ]; then exit $X; fi; \ done python3.12 lib.linux-x86_64-cpython-312 test_nonExistant_aux (python.test.TestAUX.test_nonExistant_aux) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example2.slow5.idx'. 23-Mar-26 04:12:40 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_id (python.test.TestAUX.test_read_id) ... 23-Mar-26 04:12:40 - [WARNING]: get_read unknown aux name: noExistTest ok test_read_number (python.test.TestAUX.test_read_number) ... 23-Mar-26 04:12:40 - [WARNING]: get_read unknown aux name: noExistTest ok test_start_mux (python.test.TestAUX.test_start_mux) ... 23-Mar-26 04:12:40 - [WARNING]: get_read unknown aux name: noExistTest ok test_get_aux_names (python.test.TestAuxAll.test_get_aux_names) ... ok test_get_aux_types (python.test.TestAuxAll.test_get_aux_types) ... ok test_get_read_all_aux (python.test.TestAuxAll.test_get_read_all_aux) ... ok test_seq_reads_pA_aux_all (python.test.TestAuxAll.test_seq_reads_pA_aux_all) ... ok test_class_methods (python.test.TestBase.test_class_methods) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example.slow5.idx'. ok test_digitisation (python.test.TestBase.test_digitisation) ... ok test_len_raw_signal (python.test.TestBase.test_len_raw_signal) ... ok test_offset (python.test.TestBase.test_offset) ... ok test_pylen_signal (python.test.TestBase.test_pylen_signal) ... ok test_range (python.test.TestBase.test_range) ... ok test_read_group (python.test.TestBase.test_read_group) ... ok test_read_id (python.test.TestBase.test_read_id) ... ok test_read_type (python.test.TestBase.test_read_type) ... ok test_sampling_rate (python.test.TestBase.test_sampling_rate) ... ok test_signal (python.test.TestBase.test_signal) ... ok test_get_all_headers (python.test.TestHeaders.test_get_all_headers) ... ok test_get_header_names (python.test.TestHeaders.test_get_header_names) ... ok test_digitisation (python.test.TestRandomAccess.test_digitisation) ... ok test_len_raw_signal (python.test.TestRandomAccess.test_len_raw_signal) ... ok test_offset (python.test.TestRandomAccess.test_offset) ... ok test_pylen_signal (python.test.TestRandomAccess.test_pylen_signal) ... ok test_range (python.test.TestRandomAccess.test_range) ... ok test_read_group (python.test.TestRandomAccess.test_read_group) ... ok test_read_id (python.test.TestRandomAccess.test_read_id) ... ok test_sampling_rate (python.test.TestRandomAccess.test_sampling_rate) ... ok test_signal (python.test.TestRandomAccess.test_signal) ... ok test_seq_reads (python.test.TestSequentialRead.test_seq_reads) ... ok test_get_empty_header (python.test.TestWrite.test_get_empty_header) ... ok test_get_empty_record (python.test.TestWrite.test_get_empty_record) ... ok test_write_header (python.test.TestWrite.test_write_header) ... ok test_write_records (python.test.TestWrite.test_write_records) ... ok test_get_empty_aux (python.test.TestWriteAux.test_get_empty_aux) ... ok test_write_records_aux (python.test.TestWriteAux.test_write_records_aux) ... ok test_write_matches_read (python.test.TestWriteData.test_write_matches_read) ... [slow5_idx_init::INFO] Index file not found. Creating an index at 'examples/example_write.slow5.idx'. ok test_base_reads (python.test.TestYieldRead.test_base_reads) ... ok test_reads_with_no_exist (python.test.TestYieldRead.test_reads_with_no_exist) ... [slow5_idx_get::ERROR] Read ID 'null_read' was not found. At src/slow5_idx.c:441 ok test_seq_reads_multi (python.test.testMultiThreading.test_seq_reads_multi) ... ok test_get_reads_multi (python.test.testMultiThreadingRandom.test_get_reads_multi) ... ok ---------------------------------------------------------------------- Ran 42 tests in 0.977s OK r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc r0 r1 r2 r3 r4 r5 0a238451-b9ed-446d-a152-badd074006c4 0d624d4b-671f-40b8-9798-84f2ccc4d7fc make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/libslow5lib-0.7.0\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/libslow5lib-0.7.0+dfsg -B/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so.0 -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so -- Up-to-date: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so.0 -- Up-to-date: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so -- Installing: /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5_static.a make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' mv debian/tmp/usr/lib/i386-linux-gnu/libslow5_static.a debian/tmp/usr/lib/i386-linux-gnu/libslow5.a d-shlibmove --commit \ --t64 \ --multiarch \ --devunversioned \ --exclude-la \ --movedev include usr \ debian/tmp/usr/lib/i386-linux-gnu/libslow5.so Library package automatic movement utility --> libzstd-dev package exists. set -e install -d -m 755 debian/libslow5-dev/usr/lib/i386-linux-gnu install -d -m 755 debian/libslow5-0t64/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libslow5.a debian/libslow5-dev/usr/lib/i386-linux-gnu mv debian/tmp/usr/lib/i386-linux-gnu/libslow5.so debian/libslow5-dev/usr/lib/i386-linux-gnu mv /build/reproducible-path/libslow5lib-0.7.0+dfsg/debian/tmp/usr/lib/i386-linux-gnu/libslow5.so.0 debian/libslow5-0t64/usr/lib/i386-linux-gnu PKGDEV=libslow5-dev PKGSHL=libslow5-0t64 install -d -m 755 debian/libslow5-dev/usr mv include debian/libslow5-dev/usr dh_install dh_install -plibslow5-dev src/*.h usr/include/slow5/ dh_install -ppython3-slow5 build/lib.*-*/* usr/lib/python3/dist-packages/ make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installexamples make[1]: Entering directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_installexamples dh_installexamples -ppython3-slow5 python/example.py dh_installexamples -ppython3-slow5 examples/*.slow5 make[1]: Leaving directory '/build/reproducible-path/libslow5lib-0.7.0+dfsg' dh_python3 -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.2.usr-is-merged dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.2.usr-is-merged dpkg-shlibdeps: warning: symbol inflate used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflate used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateReset used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol zigzag_delta_encode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateReset used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol streamvbyte_decode used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: symbol deflateInit2_ used by debian/libslow5-0t64/usr/lib/i386-linux-gnu/libslow5.so.0 found in none of the libraries dpkg-shlibdeps: warning: 2 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package libslow5-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${devlibs:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libslow5-0t64: substitution variable ${python3:Depends} unused, but is defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'libslow5-dev' in '../libslow5-dev_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'libslow5-0t64-dbgsym' in '../libslow5-0t64-dbgsym_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'libslow5-0t64' in '../libslow5-0t64_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'python3-slow5-dbgsym' in '../python3-slow5-dbgsym_0.7.0+dfsg-3_i386.deb'. dpkg-deb: building package 'python3-slow5' in '../python3-slow5_0.7.0+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../libslow5lib_0.7.0+dfsg-3_i386.buildinfo dpkg-genchanges --build=binary -O../libslow5lib_0.7.0+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/43316/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/43316/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/43316 and its subdirectories I: Current time: Mon Mar 23 04:13:15 +14 2026 I: pbuilder-time-stamp: 1774188795