I: pbuilder: network access will be disabled during build
I: Current time: Mon Jan 19 10:47:17 +14 2026
I: pbuilder-time-stamp: 1768769237
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [mapdamage_2.2.2+dfsg-1.dsc]
I: copying [./mapdamage_2.2.2+dfsg.orig.tar.xz]
I: copying [./mapdamage_2.2.2+dfsg-1.debian.tar.xz]
I: Extracting source
gpgv: Signature made Sun Aug 25 16:49:00 2024
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./mapdamage_2.2.2+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting mapdamage in mapdamage-2.2.2+dfsg
dpkg-source: info: unpacking mapdamage_2.2.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking mapdamage_2.2.2+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_seqtk.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/D01_modify_environment starting
debug: Running on ionos16-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Jan 18 20:48 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=i386
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 '
DIRSTACK=()
DISTRIBUTION=trixie
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=i686
HOST_ARCH=i386
IFS='
'
INVOCATION_ID=1c3de21f284148aca0f09bf6688ee006
LANG=C
LANGUAGE=de_CH:de
LC_ALL=C
LD_LIBRARY_PATH=/usr/lib/libeatmydata
LD_PRELOAD=libeatmydata.so
MACHTYPE=i686-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=40152
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.67d07myY/pbuilderrc_0w64 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.67d07myY/b2 --logfile b2/build.log mapdamage_2.2.2+dfsg-1.dsc'
SUDO_GID=112
SUDO_UID=107
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://213.165.73.152:3128
I: uname -a
Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), python3, dh-python, python3-setuptools, python3-pysam, seqtk, r-base-core, r-cran-gam, r-cran-ggplot2, r-cran-inline
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19952 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
pbuilder-satisfydepends-dummy depends on dh-python; however:
Package dh-python is not installed.
pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
Package python3-setuptools is not installed.
pbuilder-satisfydepends-dummy depends on python3-pysam; however:
Package python3-pysam is not installed.
pbuilder-satisfydepends-dummy depends on seqtk; however:
Package seqtk is not installed.
pbuilder-satisfydepends-dummy depends on r-base-core; however:
Package r-base-core is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-gam; however:
Package r-cran-gam is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however:
Package r-cran-ggplot2 is not installed.
pbuilder-satisfydepends-dummy depends on r-cran-inline; however:
Package r-cran-inline is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcairo2{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libice6{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} python3{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-pysam{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} r-base-core{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-fansi{a} r-cran-farver{a} r-cran-foreach{a} r-cran-gam{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gtable{a} r-cran-inline{a} r-cran-isoband{a} r-cran-iterators{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rlang{a} r-cran-scales{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} seqtk{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a}
The following packages are RECOMMENDED but will NOT be installed:
curl krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl linux-sysctl-defaults lynx psmisc publicsuffix r-base-dev r-cran-bit64 r-cran-callr r-cran-covr r-cran-crayon r-cran-data.table r-cran-dbi r-cran-dichromat r-cran-digest r-cran-dplyr r-cran-formattable r-cran-fs r-cran-generics r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-interp r-cran-jpeg r-cran-kernlab r-cran-kernsmooth r-cran-knitr r-cran-lintr r-cran-lubridate r-cran-mapproj r-cran-maps r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-png r-cran-processx r-cran-profvis r-cran-ps r-cran-quantreg r-cran-ragg r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sf r-cran-shiny r-cran-shinyjs r-cran-stringi r-cran-svglite r-cran-testthat r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-viridis r-cran-waldo r-cran-whoami r-cran-xml2 r-cran-zeallot r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 170 newly installed, 0 to remove and 0 not upgraded.
Need to get 114 MB of archives. After unpacking 309 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.8-3 [816 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.8-3 [2239 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.12.6-1 [26.7 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-4 [256 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2~rc1-2 [24.0 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 12 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-5 [69.3 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-5 [173 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.8-3 [1968 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.8-3 [677 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.12.6-1 [9692 B]
Get: 22 http://deb.debian.org/debian trixie/main i386 python3 i386 3.12.6-1 [27.8 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-6 [876 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 openssl i386 3.3.2-2 [1387 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20240203 [158 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-6 [1198 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-12 [95.9 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 ucf all 3.0045 [45.2 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B]
Get: 49 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.5.0-1 [63.8 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 63 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.2.0-1 [213 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.2.0-1 [731 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20241024 [109 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-3 [288 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-1.1+b1 [318 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-1.1+b1 [402 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 fontconfig i386 2.15.0-1.1+b1 [463 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.0-4 [143 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b2 [52.6 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b2 [28.9 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.2-2 [591 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.11.1-1 [404 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.11.1-1 [393 kB]
Get: 101 http://deb.debian.org/debian trixie/main i386 libdatrie1 i386 0.2.13-3+b1 [39.9 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-8 [735 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.82.4-1 [1572 kB]
Get: 106 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB]
Get: 107 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.1.0-1 [503 kB]
Get: 108 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB]
Get: 109 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-2 [500 kB]
Get: 110 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23.1 [216 kB]
Get: 111 http://deb.debian.org/debian trixie/main i386 libice6 i386 2:1.1.1-1 [67.8 kB]
Get: 112 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB]
Get: 113 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB]
Get: 114 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.0-4 [2194 kB]
Get: 115 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB]
Get: 116 http://deb.debian.org/debian trixie/main i386 libthai-data all 0.1.29-2 [168 kB]
Get: 117 http://deb.debian.org/debian trixie/main i386 libthai0 i386 0.1.29-2+b1 [50.3 kB]
Get: 118 http://deb.debian.org/debian trixie/main i386 libpango-1.0-0 i386 1.55.0+ds-3 [233 kB]
Get: 119 http://deb.debian.org/debian trixie/main i386 libpangoft2-1.0-0 i386 1.55.0+ds-3 [58.2 kB]
Get: 120 http://deb.debian.org/debian trixie/main i386 libpangocairo-1.0-0 i386 1.55.0+ds-3 [36.2 kB]
Get: 121 http://deb.debian.org/debian trixie/main i386 libpaper1 i386 1.1.29+b2 [13.0 kB]
Get: 122 http://deb.debian.org/debian trixie/main i386 libpaper-utils i386 1.1.29+b2 [9304 B]
Get: 123 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.4.0-0.1+b1 [113 kB]
Get: 124 http://deb.debian.org/debian trixie/main i386 libsm6 i386 2:1.2.4-1 [35.9 kB]
Get: 125 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.15+dfsg-2 [1103 kB]
Get: 126 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.4.0-0.1+b1 [322 kB]
Get: 127 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB]
Get: 128 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b2 [55.3 kB]
Get: 129 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b2 [17.3 kB]
Get: 130 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.15-1 [833 kB]
Get: 131 http://deb.debian.org/debian trixie/main i386 libxt6t64 i386 1:1.2.1-1.2+b1 [193 kB]
Get: 132 http://deb.debian.org/debian trixie/main i386 python3-pysam i386 0.22.1+ds-2+b2 [4429 kB]
Get: 133 http://deb.debian.org/debian trixie/main i386 zip i386 3.0-14 [239 kB]
Get: 134 http://deb.debian.org/debian trixie/main i386 unzip i386 6.0-28 [166 kB]
Get: 135 http://deb.debian.org/debian trixie/main i386 xdg-utils all 1.2.1-2 [75.8 kB]
Get: 136 http://deb.debian.org/debian trixie/main i386 r-base-core i386 4.4.2-1 [28.3 MB]
Get: 137 http://deb.debian.org/debian trixie/main i386 r-cran-cli i386 3.6.3-1 [1344 kB]
Get: 138 http://deb.debian.org/debian trixie/main i386 r-cran-codetools all 0.2-20-1 [91.1 kB]
Get: 139 http://deb.debian.org/debian trixie/main i386 r-cran-colorspace i386 2.1-1+dfsg-1 [1709 kB]
Get: 140 http://deb.debian.org/debian trixie/main i386 r-cran-fansi i386 1.0.5-1 [625 kB]
Get: 141 http://deb.debian.org/debian trixie/main i386 r-cran-farver i386 2.1.2-1 [1402 kB]
Get: 142 http://deb.debian.org/debian trixie/main i386 r-cran-iterators all 1.0.14-1 [337 kB]
Get: 143 http://deb.debian.org/debian trixie/main i386 r-cran-foreach all 1.5.2-1 [122 kB]
Get: 144 http://deb.debian.org/debian trixie/main i386 r-cran-gam i386 1.22-5-1 [391 kB]
Get: 145 http://deb.debian.org/debian trixie/main i386 r-cran-glue i386 1.8.0-1 [166 kB]
Get: 146 http://deb.debian.org/debian trixie/main i386 r-cran-rlang i386 1.1.4-1 [1727 kB]
Get: 147 http://deb.debian.org/debian trixie/main i386 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get: 148 http://deb.debian.org/debian trixie/main i386 r-cran-gtable all 0.3.6+dfsg-1 [228 kB]
Get: 149 http://deb.debian.org/debian trixie/main i386 r-cran-isoband i386 0.2.7-1 [1617 kB]
Get: 150 http://deb.debian.org/debian trixie/main i386 r-cran-mass i386 7.3-61-1 [1113 kB]
Get: 151 http://deb.debian.org/debian trixie/main i386 r-cran-lattice i386 0.22-6-1 [1393 kB]
Get: 152 http://deb.debian.org/debian trixie/main i386 r-cran-nlme i386 3.1.166-1 [2329 kB]
Get: 153 http://deb.debian.org/debian trixie/main i386 r-cran-matrix i386 1.7-1-1 [4156 kB]
Get: 154 http://deb.debian.org/debian trixie/main i386 r-cran-mgcv i386 1.9-1-1 [3256 kB]
Get: 155 http://deb.debian.org/debian trixie/main i386 r-cran-labeling all 0.4.3-1 [62.4 kB]
Get: 156 http://deb.debian.org/debian trixie/main i386 r-cran-munsell all 0.5.1-1 [237 kB]
Get: 157 http://deb.debian.org/debian trixie/main i386 r-cran-r6 all 2.5.1-1 [105 kB]
Get: 158 http://deb.debian.org/debian trixie/main i386 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get: 159 http://deb.debian.org/debian trixie/main i386 r-cran-viridislite all 0.4.2-2 [1299 kB]
Get: 160 http://deb.debian.org/debian trixie/main i386 r-cran-scales all 1.3.0-1 [677 kB]
Get: 161 http://deb.debian.org/debian trixie/main i386 r-cran-magrittr i386 2.0.3-1 [201 kB]
Get: 162 http://deb.debian.org/debian trixie/main i386 r-cran-utf8 i386 1.2.4-1 [135 kB]
Get: 163 http://deb.debian.org/debian trixie/main i386 r-cran-vctrs i386 0.6.5-1 [1393 kB]
Get: 164 http://deb.debian.org/debian trixie/main i386 r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get: 165 http://deb.debian.org/debian trixie/main i386 r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get: 166 http://deb.debian.org/debian trixie/main i386 r-cran-tibble i386 3.2.1+dfsg-2 [421 kB]
Get: 167 http://deb.debian.org/debian trixie/main i386 r-cran-withr all 3.0.2+dfsg-1 [226 kB]
Get: 168 http://deb.debian.org/debian trixie/main i386 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB]
Get: 169 http://deb.debian.org/debian trixie/main i386 r-cran-inline all 0.3.20-1 [132 kB]
Get: 170 http://deb.debian.org/debian trixie/main i386 seqtk i386 1.4-2 [38.2 kB]
Fetched 114 MB in 6s (17.7 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpython3.12-minimal:i386.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19952 files and directories currently installed.)
Preparing to unpack .../libpython3.12-minimal_3.12.8-3_i386.deb ...
Unpacking libpython3.12-minimal:i386 (3.12.8-3) ...
Selecting previously unselected package libexpat1:i386.
Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ...
Unpacking libexpat1:i386 (2.6.4-1) ...
Selecting previously unselected package python3.12-minimal.
Preparing to unpack .../python3.12-minimal_3.12.8-3_i386.deb ...
Unpacking python3.12-minimal (3.12.8-3) ...
Setting up libpython3.12-minimal:i386 (3.12.8-3) ...
Setting up libexpat1:i386 (2.6.4-1) ...
Setting up python3.12-minimal (3.12.8-3) ...
Selecting previously unselected package python3-minimal.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 20272 files and directories currently installed.)
Preparing to unpack .../00-python3-minimal_3.12.6-1_i386.deb ...
Unpacking python3-minimal (3.12.6-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../01-media-types_10.1.0_all.deb ...
Unpacking media-types (10.1.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../02-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../03-tzdata_2024b-4_all.deb ...
Unpacking tzdata (2024b-4) ...
Selecting previously unselected package libkrb5support0:i386.
Preparing to unpack .../04-libkrb5support0_1.21.3-3_i386.deb ...
Unpacking libkrb5support0:i386 (1.21.3-3) ...
Selecting previously unselected package libcom-err2:i386.
Preparing to unpack .../05-libcom-err2_1.47.2~rc1-2_i386.deb ...
Unpacking libcom-err2:i386 (1.47.2~rc1-2) ...
Selecting previously unselected package libk5crypto3:i386.
Preparing to unpack .../06-libk5crypto3_1.21.3-3_i386.deb ...
Unpacking libk5crypto3:i386 (1.21.3-3) ...
Selecting previously unselected package libkeyutils1:i386.
Preparing to unpack .../07-libkeyutils1_1.6.3-4_i386.deb ...
Unpacking libkeyutils1:i386 (1.6.3-4) ...
Selecting previously unselected package libkrb5-3:i386.
Preparing to unpack .../08-libkrb5-3_1.21.3-3_i386.deb ...
Unpacking libkrb5-3:i386 (1.21.3-3) ...
Selecting previously unselected package libgssapi-krb5-2:i386.
Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_i386.deb ...
Unpacking libgssapi-krb5-2:i386 (1.21.3-3) ...
Selecting previously unselected package libtirpc-common.
Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ...
Unpacking libtirpc-common (1.3.4+ds-1.3) ...
Selecting previously unselected package libtirpc3t64:i386.
Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ...
Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ...
Selecting previously unselected package libnsl2:i386.
Preparing to unpack .../12-libnsl2_1.3.0-3+b3_i386.deb ...
Unpacking libnsl2:i386 (1.3.0-3+b3) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../13-readline-common_8.2-5_all.deb ...
Unpacking readline-common (8.2-5) ...
Selecting previously unselected package libreadline8t64:i386.
Preparing to unpack .../14-libreadline8t64_8.2-5_i386.deb ...
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:i386 (8.2-5) ...
Selecting previously unselected package libpython3.12-stdlib:i386.
Preparing to unpack .../15-libpython3.12-stdlib_3.12.8-3_i386.deb ...
Unpacking libpython3.12-stdlib:i386 (3.12.8-3) ...
Selecting previously unselected package python3.12.
Preparing to unpack .../16-python3.12_3.12.8-3_i386.deb ...
Unpacking python3.12 (3.12.8-3) ...
Selecting previously unselected package libpython3-stdlib:i386.
Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_i386.deb ...
Unpacking libpython3-stdlib:i386 (3.12.6-1) ...
Setting up python3-minimal (3.12.6-1) ...
Selecting previously unselected package python3.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 21335 files and directories currently installed.)
Preparing to unpack .../000-python3_3.12.6-1_i386.deb ...
Unpacking python3 (3.12.6-1) ...
Selecting previously unselected package libproc2-0:i386.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-6_i386.deb ...
Unpacking libproc2-0:i386 (2:4.0.4-6) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-6_i386.deb ...
Unpacking procps (2:4.0.4-6) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package openssl.
Preparing to unpack .../004-openssl_3.3.2-2_i386.deb ...
Unpacking openssl (3.3.2-2) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../005-ca-certificates_20240203_all.deb ...
Unpacking ca-certificates (20240203) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../006-libmagic-mgc_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
Preparing to unpack .../007-libmagic1t64_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
Selecting previously unselected package file.
Preparing to unpack .../008-file_1%3a5.45-3+b1_i386.deb ...
Unpacking file (1:5.45-3+b1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../009-gettext-base_0.22.5-2_i386.deb ...
Unpacking gettext-base (0.22.5-2) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../010-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../011-groff-base_1.23.0-6_i386.deb ...
Unpacking groff-base (1.23.0-6) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../012-bsdextrautils_2.40.2-12_i386.deb ...
Unpacking bsdextrautils (2.40.2-12) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../013-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../014-man-db_2.13.0-1_i386.deb ...
Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../015-ucf_3.0045_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0045) ...
Selecting previously unselected package m4.
Preparing to unpack .../016-m4_1.4.19-4_i386.deb ...
Unpacking m4 (1.4.19-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../017-autoconf_2.72-3_all.deb ...
Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ...
Unpacking autotools-dev (20220109.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ...
Unpacking automake (1:1.16.5-1.3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ...
Unpacking autopoint (0.22.5-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ...
Unpacking libdebhelper-perl (13.20) ...
Selecting previously unselected package libtool.
Preparing to unpack .../022-libtool_2.4.7-8_all.deb ...
Unpacking libtool (2.4.7-8) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../023-dh-autoreconf_20_all.deb ...
Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.14.0-1) ...
Selecting previously unselected package libelf1t64:i386.
Preparing to unpack .../027-libelf1t64_0.192-4_i386.deb ...
Unpacking libelf1t64:i386 (0.192-4) ...
Selecting previously unselected package dwz.
Preparing to unpack .../028-dwz_0.15-1+b1_i386.deb ...
Unpacking dwz (0.15-1+b1) ...
Selecting previously unselected package libicu72:i386.
Preparing to unpack .../029-libicu72_72.1-5+b1_i386.deb ...
Unpacking libicu72:i386 (72.1-5+b1) ...
Selecting previously unselected package libxml2:i386.
Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ...
Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../031-gettext_0.22.5-2_i386.deb ...
Unpacking gettext (0.22.5-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../034-debhelper_13.20_all.deb ...
Unpacking debhelper (13.20) ...
Selecting previously unselected package python3-autocommand.
Preparing to unpack .../035-python3-autocommand_2.2.2-3_all.deb ...
Unpacking python3-autocommand (2.2.2-3) ...
Selecting previously unselected package python3-more-itertools.
Preparing to unpack .../036-python3-more-itertools_10.5.0-1_all.deb ...
Unpacking python3-more-itertools (10.5.0-1) ...
Selecting previously unselected package python3-typing-extensions.
Preparing to unpack .../037-python3-typing-extensions_4.12.2-2_all.deb ...
Unpacking python3-typing-extensions (4.12.2-2) ...
Selecting previously unselected package python3-typeguard.
Preparing to unpack .../038-python3-typeguard_4.4.1-1_all.deb ...
Unpacking python3-typeguard (4.4.1-1) ...
Selecting previously unselected package python3-inflect.
Preparing to unpack .../039-python3-inflect_7.3.1-2_all.deb ...
Unpacking python3-inflect (7.3.1-2) ...
Selecting previously unselected package python3-jaraco.context.
Preparing to unpack .../040-python3-jaraco.context_6.0.0-1_all.deb ...
Unpacking python3-jaraco.context (6.0.0-1) ...
Selecting previously unselected package python3-jaraco.functools.
Preparing to unpack .../041-python3-jaraco.functools_4.1.0-1_all.deb ...
Unpacking python3-jaraco.functools (4.1.0-1) ...
Selecting previously unselected package python3-pkg-resources.
Preparing to unpack .../042-python3-pkg-resources_75.2.0-1_all.deb ...
Unpacking python3-pkg-resources (75.2.0-1) ...
Selecting previously unselected package python3-jaraco.text.
Preparing to unpack .../043-python3-jaraco.text_4.0.0-1_all.deb ...
Unpacking python3-jaraco.text (4.0.0-1) ...
Selecting previously unselected package python3-zipp.
Preparing to unpack .../044-python3-zipp_3.21.0-1_all.deb ...
Unpacking python3-zipp (3.21.0-1) ...
Selecting previously unselected package python3-setuptools.
Preparing to unpack .../045-python3-setuptools_75.2.0-1_all.deb ...
Unpacking python3-setuptools (75.2.0-1) ...
Selecting previously unselected package dh-python.
Preparing to unpack .../046-dh-python_6.20241024_all.deb ...
Unpacking dh-python (6.20241024) ...
Selecting previously unselected package libbrotli1:i386.
Preparing to unpack .../047-libbrotli1_1.1.0-2+b6_i386.deb ...
Unpacking libbrotli1:i386 (1.1.0-2+b6) ...
Selecting previously unselected package libpng16-16t64:i386.
Preparing to unpack .../048-libpng16-16t64_1.6.44-3_i386.deb ...
Unpacking libpng16-16t64:i386 (1.6.44-3) ...
Selecting previously unselected package libfreetype6:i386.
Preparing to unpack .../049-libfreetype6_2.13.3+dfsg-1_i386.deb ...
Unpacking libfreetype6:i386 (2.13.3+dfsg-1) ...
Selecting previously unselected package fonts-dejavu-mono.
Preparing to unpack .../050-fonts-dejavu-mono_2.37-8_all.deb ...
Unpacking fonts-dejavu-mono (2.37-8) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../051-fonts-dejavu-core_2.37-8_all.deb ...
Unpacking fonts-dejavu-core (2.37-8) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../052-fontconfig-config_2.15.0-1.1+b1_i386.deb ...
Unpacking fontconfig-config (2.15.0-1.1+b1) ...
Selecting previously unselected package libfontconfig1:i386.
Preparing to unpack .../053-libfontconfig1_2.15.0-1.1+b1_i386.deb ...
Unpacking libfontconfig1:i386 (2.15.0-1.1+b1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../054-fontconfig_2.15.0-1.1+b1_i386.deb ...
Unpacking fontconfig (2.15.0-1.1+b1) ...
Selecting previously unselected package libblas3:i386.
Preparing to unpack .../055-libblas3_3.12.0-4_i386.deb ...
Unpacking libblas3:i386 (3.12.0-4) ...
Selecting previously unselected package libpixman-1-0:i386.
Preparing to unpack .../056-libpixman-1-0_0.44.0-3_i386.deb ...
Unpacking libpixman-1-0:i386 (0.44.0-3) ...
Selecting previously unselected package libxau6:i386.
Preparing to unpack .../057-libxau6_1%3a1.0.11-1_i386.deb ...
Unpacking libxau6:i386 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:i386.
Preparing to unpack .../058-libxdmcp6_1%3a1.1.5-1_i386.deb ...
Unpacking libxdmcp6:i386 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:i386.
Preparing to unpack .../059-libxcb1_1.17.0-2+b1_i386.deb ...
Unpacking libxcb1:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../060-libx11-data_2%3a1.8.10-2_all.deb ...
Unpacking libx11-data (2:1.8.10-2) ...
Selecting previously unselected package libx11-6:i386.
Preparing to unpack .../061-libx11-6_2%3a1.8.10-2_i386.deb ...
Unpacking libx11-6:i386 (2:1.8.10-2) ...
Selecting previously unselected package libxcb-render0:i386.
Preparing to unpack .../062-libxcb-render0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-render0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:i386.
Preparing to unpack .../063-libxcb-shm0_1.17.0-2+b1_i386.deb ...
Unpacking libxcb-shm0:i386 (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:i386.
Preparing to unpack .../064-libxext6_2%3a1.3.4-1+b2_i386.deb ...
Unpacking libxext6:i386 (2:1.3.4-1+b2) ...
Selecting previously unselected package libxrender1:i386.
Preparing to unpack .../065-libxrender1_1%3a0.9.10-1.1+b2_i386.deb ...
Unpacking libxrender1:i386 (1:0.9.10-1.1+b2) ...
Selecting previously unselected package libcairo2:i386.
Preparing to unpack .../066-libcairo2_1.18.2-2_i386.deb ...
Unpacking libcairo2:i386 (1.18.2-2) ...
Selecting previously unselected package libsasl2-modules-db:i386.
Preparing to unpack .../067-libsasl2-modules-db_2.1.28+dfsg1-8_i386.deb ...
Unpacking libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ...
Selecting previously unselected package libsasl2-2:i386.
Preparing to unpack .../068-libsasl2-2_2.1.28+dfsg1-8_i386.deb ...
Unpacking libsasl2-2:i386 (2.1.28+dfsg1-8) ...
Selecting previously unselected package libldap-2.5-0:i386.
Preparing to unpack .../069-libldap-2.5-0_2.5.18+dfsg-3+b1_i386.deb ...
Unpacking libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ...
Selecting previously unselected package libnghttp2-14:i386.
Preparing to unpack .../070-libnghttp2-14_1.64.0-1_i386.deb ...
Unpacking libnghttp2-14:i386 (1.64.0-1) ...
Selecting previously unselected package libnghttp3-9:i386.
Preparing to unpack .../071-libnghttp3-9_1.6.0-2_i386.deb ...
Unpacking libnghttp3-9:i386 (1.6.0-2) ...
Selecting previously unselected package libngtcp2-16:i386.
Preparing to unpack .../072-libngtcp2-16_1.9.1-1_i386.deb ...
Unpacking libngtcp2-16:i386 (1.9.1-1) ...
Selecting previously unselected package libngtcp2-crypto-gnutls8:i386.
Preparing to unpack .../073-libngtcp2-crypto-gnutls8_1.9.1-1_i386.deb ...
Unpacking libngtcp2-crypto-gnutls8:i386 (1.9.1-1) ...
Selecting previously unselected package libpsl5t64:i386.
Preparing to unpack .../074-libpsl5t64_0.21.2-1.1+b1_i386.deb ...
Unpacking libpsl5t64:i386 (0.21.2-1.1+b1) ...
Selecting previously unselected package librtmp1:i386.
Preparing to unpack .../075-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_i386.deb ...
Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Selecting previously unselected package libssh2-1t64:i386.
Preparing to unpack .../076-libssh2-1t64_1.11.1-1_i386.deb ...
Unpacking libssh2-1t64:i386 (1.11.1-1) ...
Selecting previously unselected package libcurl3t64-gnutls:i386.
Preparing to unpack .../077-libcurl3t64-gnutls_8.11.1-1_i386.deb ...
Unpacking libcurl3t64-gnutls:i386 (8.11.1-1) ...
Selecting previously unselected package libcurl4t64:i386.
Preparing to unpack .../078-libcurl4t64_8.11.1-1_i386.deb ...
Unpacking libcurl4t64:i386 (8.11.1-1) ...
Selecting previously unselected package libdatrie1:i386.
Preparing to unpack .../079-libdatrie1_0.2.13-3+b1_i386.deb ...
Unpacking libdatrie1:i386 (0.2.13-3+b1) ...
Selecting previously unselected package libdeflate0:i386.
Preparing to unpack .../080-libdeflate0_1.22-1_i386.deb ...
Unpacking libdeflate0:i386 (1.22-1) ...
Selecting previously unselected package libfribidi0:i386.
Preparing to unpack .../081-libfribidi0_1.0.16-1_i386.deb ...
Unpacking libfribidi0:i386 (1.0.16-1) ...
Selecting previously unselected package libgfortran5:i386.
Preparing to unpack .../082-libgfortran5_14.2.0-8_i386.deb ...
Unpacking libgfortran5:i386 (14.2.0-8) ...
Selecting previously unselected package libglib2.0-0t64:i386.
Preparing to unpack .../083-libglib2.0-0t64_2.82.4-1_i386.deb ...
Unpacking libglib2.0-0t64:i386 (2.82.4-1) ...
Selecting previously unselected package libgraphite2-3:i386.
Preparing to unpack .../084-libgraphite2-3_1.3.14-2+b1_i386.deb ...
Unpacking libgraphite2-3:i386 (1.3.14-2+b1) ...
Selecting previously unselected package libharfbuzz0b:i386.
Preparing to unpack .../085-libharfbuzz0b_10.1.0-1_i386.deb ...
Unpacking libharfbuzz0b:i386 (10.1.0-1) ...
Selecting previously unselected package libhtscodecs2:i386.
Preparing to unpack .../086-libhtscodecs2_1.6.1-1_i386.deb ...
Unpacking libhtscodecs2:i386 (1.6.1-1) ...
Selecting previously unselected package libhts3t64:i386.
Preparing to unpack .../087-libhts3t64_1.20+ds-2_i386.deb ...
Unpacking libhts3t64:i386 (1.20+ds-2) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../088-x11-common_1%3a7.7+23.1_all.deb ...
Unpacking x11-common (1:7.7+23.1) ...
Selecting previously unselected package libice6:i386.
Preparing to unpack .../089-libice6_2%3a1.1.1-1_i386.deb ...
Unpacking libice6:i386 (2:1.1.1-1) ...
Selecting previously unselected package libjbig0:i386.
Preparing to unpack .../090-libjbig0_2.1-6.1+b2_i386.deb ...
Unpacking libjbig0:i386 (2.1-6.1+b2) ...
Selecting previously unselected package libjpeg62-turbo:i386.
Preparing to unpack .../091-libjpeg62-turbo_1%3a2.1.5-3+b1_i386.deb ...
Unpacking libjpeg62-turbo:i386 (1:2.1.5-3+b1) ...
Selecting previously unselected package liblapack3:i386.
Preparing to unpack .../092-liblapack3_3.12.0-4_i386.deb ...
Unpacking liblapack3:i386 (3.12.0-4) ...
Selecting previously unselected package liblerc4:i386.
Preparing to unpack .../093-liblerc4_4.0.0+ds-5_i386.deb ...
Unpacking liblerc4:i386 (4.0.0+ds-5) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../094-libthai-data_0.1.29-2_all.deb ...
Unpacking libthai-data (0.1.29-2) ...
Selecting previously unselected package libthai0:i386.
Preparing to unpack .../095-libthai0_0.1.29-2+b1_i386.deb ...
Unpacking libthai0:i386 (0.1.29-2+b1) ...
Selecting previously unselected package libpango-1.0-0:i386.
Preparing to unpack .../096-libpango-1.0-0_1.55.0+ds-3_i386.deb ...
Unpacking libpango-1.0-0:i386 (1.55.0+ds-3) ...
Selecting previously unselected package libpangoft2-1.0-0:i386.
Preparing to unpack .../097-libpangoft2-1.0-0_1.55.0+ds-3_i386.deb ...
Unpacking libpangoft2-1.0-0:i386 (1.55.0+ds-3) ...
Selecting previously unselected package libpangocairo-1.0-0:i386.
Preparing to unpack .../098-libpangocairo-1.0-0_1.55.0+ds-3_i386.deb ...
Unpacking libpangocairo-1.0-0:i386 (1.55.0+ds-3) ...
Selecting previously unselected package libpaper1:i386.
Preparing to unpack .../099-libpaper1_1.1.29+b2_i386.deb ...
Unpacking libpaper1:i386 (1.1.29+b2) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../100-libpaper-utils_1.1.29+b2_i386.deb ...
Unpacking libpaper-utils (1.1.29+b2) ...
Selecting previously unselected package libsharpyuv0:i386.
Preparing to unpack .../101-libsharpyuv0_1.4.0-0.1+b1_i386.deb ...
Unpacking libsharpyuv0:i386 (1.4.0-0.1+b1) ...
Selecting previously unselected package libsm6:i386.
Preparing to unpack .../102-libsm6_2%3a1.2.4-1_i386.deb ...
Unpacking libsm6:i386 (2:1.2.4-1) ...
Selecting previously unselected package libtcl8.6:i386.
Preparing to unpack .../103-libtcl8.6_8.6.15+dfsg-2_i386.deb ...
Unpacking libtcl8.6:i386 (8.6.15+dfsg-2) ...
Selecting previously unselected package libwebp7:i386.
Preparing to unpack .../104-libwebp7_1.4.0-0.1+b1_i386.deb ...
Unpacking libwebp7:i386 (1.4.0-0.1+b1) ...
Selecting previously unselected package libtiff6:i386.
Preparing to unpack .../105-libtiff6_4.5.1+git230720-5_i386.deb ...
Unpacking libtiff6:i386 (4.5.1+git230720-5) ...
Selecting previously unselected package libxft2:i386.
Preparing to unpack .../106-libxft2_2.3.6-1+b2_i386.deb ...
Unpacking libxft2:i386 (2.3.6-1+b2) ...
Selecting previously unselected package libxss1:i386.
Preparing to unpack .../107-libxss1_1%3a1.2.3-1+b2_i386.deb ...
Unpacking libxss1:i386 (1:1.2.3-1+b2) ...
Selecting previously unselected package libtk8.6:i386.
Preparing to unpack .../108-libtk8.6_8.6.15-1_i386.deb ...
Unpacking libtk8.6:i386 (8.6.15-1) ...
Selecting previously unselected package libxt6t64:i386.
Preparing to unpack .../109-libxt6t64_1%3a1.2.1-1.2+b1_i386.deb ...
Unpacking libxt6t64:i386 (1:1.2.1-1.2+b1) ...
Selecting previously unselected package python3-pysam.
Preparing to unpack .../110-python3-pysam_0.22.1+ds-2+b2_i386.deb ...
Unpacking python3-pysam (0.22.1+ds-2+b2) ...
Selecting previously unselected package zip.
Preparing to unpack .../111-zip_3.0-14_i386.deb ...
Unpacking zip (3.0-14) ...
Selecting previously unselected package unzip.
Preparing to unpack .../112-unzip_6.0-28_i386.deb ...
Unpacking unzip (6.0-28) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../113-xdg-utils_1.2.1-2_all.deb ...
Unpacking xdg-utils (1.2.1-2) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../114-r-base-core_4.4.2-1_i386.deb ...
Unpacking r-base-core (4.4.2-1) ...
Selecting previously unselected package r-cran-cli.
Preparing to unpack .../115-r-cran-cli_3.6.3-1_i386.deb ...
Unpacking r-cran-cli (3.6.3-1) ...
Selecting previously unselected package r-cran-codetools.
Preparing to unpack .../116-r-cran-codetools_0.2-20-1_all.deb ...
Unpacking r-cran-codetools (0.2-20-1) ...
Selecting previously unselected package r-cran-colorspace.
Preparing to unpack .../117-r-cran-colorspace_2.1-1+dfsg-1_i386.deb ...
Unpacking r-cran-colorspace (2.1-1+dfsg-1) ...
Selecting previously unselected package r-cran-fansi.
Preparing to unpack .../118-r-cran-fansi_1.0.5-1_i386.deb ...
Unpacking r-cran-fansi (1.0.5-1) ...
Selecting previously unselected package r-cran-farver.
Preparing to unpack .../119-r-cran-farver_2.1.2-1_i386.deb ...
Unpacking r-cran-farver (2.1.2-1) ...
Selecting previously unselected package r-cran-iterators.
Preparing to unpack .../120-r-cran-iterators_1.0.14-1_all.deb ...
Unpacking r-cran-iterators (1.0.14-1) ...
Selecting previously unselected package r-cran-foreach.
Preparing to unpack .../121-r-cran-foreach_1.5.2-1_all.deb ...
Unpacking r-cran-foreach (1.5.2-1) ...
Selecting previously unselected package r-cran-gam.
Preparing to unpack .../122-r-cran-gam_1.22-5-1_i386.deb ...
Unpacking r-cran-gam (1.22-5-1) ...
Selecting previously unselected package r-cran-glue.
Preparing to unpack .../123-r-cran-glue_1.8.0-1_i386.deb ...
Unpacking r-cran-glue (1.8.0-1) ...
Selecting previously unselected package r-cran-rlang.
Preparing to unpack .../124-r-cran-rlang_1.1.4-1_i386.deb ...
Unpacking r-cran-rlang (1.1.4-1) ...
Selecting previously unselected package r-cran-lifecycle.
Preparing to unpack .../125-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
Selecting previously unselected package r-cran-gtable.
Preparing to unpack .../126-r-cran-gtable_0.3.6+dfsg-1_all.deb ...
Unpacking r-cran-gtable (0.3.6+dfsg-1) ...
Selecting previously unselected package r-cran-isoband.
Preparing to unpack .../127-r-cran-isoband_0.2.7-1_i386.deb ...
Unpacking r-cran-isoband (0.2.7-1) ...
Selecting previously unselected package r-cran-mass.
Preparing to unpack .../128-r-cran-mass_7.3-61-1_i386.deb ...
Unpacking r-cran-mass (7.3-61-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../129-r-cran-lattice_0.22-6-1_i386.deb ...
Unpacking r-cran-lattice (0.22-6-1) ...
Selecting previously unselected package r-cran-nlme.
Preparing to unpack .../130-r-cran-nlme_3.1.166-1_i386.deb ...
Unpacking r-cran-nlme (3.1.166-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../131-r-cran-matrix_1.7-1-1_i386.deb ...
Unpacking r-cran-matrix (1.7-1-1) ...
Selecting previously unselected package r-cran-mgcv.
Preparing to unpack .../132-r-cran-mgcv_1.9-1-1_i386.deb ...
Unpacking r-cran-mgcv (1.9-1-1) ...
Selecting previously unselected package r-cran-labeling.
Preparing to unpack .../133-r-cran-labeling_0.4.3-1_all.deb ...
Unpacking r-cran-labeling (0.4.3-1) ...
Selecting previously unselected package r-cran-munsell.
Preparing to unpack .../134-r-cran-munsell_0.5.1-1_all.deb ...
Unpacking r-cran-munsell (0.5.1-1) ...
Selecting previously unselected package r-cran-r6.
Preparing to unpack .../135-r-cran-r6_2.5.1-1_all.deb ...
Unpacking r-cran-r6 (2.5.1-1) ...
Selecting previously unselected package r-cran-rcolorbrewer.
Preparing to unpack .../136-r-cran-rcolorbrewer_1.1-3-1_all.deb ...
Unpacking r-cran-rcolorbrewer (1.1-3-1) ...
Selecting previously unselected package r-cran-viridislite.
Preparing to unpack .../137-r-cran-viridislite_0.4.2-2_all.deb ...
Unpacking r-cran-viridislite (0.4.2-2) ...
Selecting previously unselected package r-cran-scales.
Preparing to unpack .../138-r-cran-scales_1.3.0-1_all.deb ...
Unpacking r-cran-scales (1.3.0-1) ...
Selecting previously unselected package r-cran-magrittr.
Preparing to unpack .../139-r-cran-magrittr_2.0.3-1_i386.deb ...
Unpacking r-cran-magrittr (2.0.3-1) ...
Selecting previously unselected package r-cran-utf8.
Preparing to unpack .../140-r-cran-utf8_1.2.4-1_i386.deb ...
Unpacking r-cran-utf8 (1.2.4-1) ...
Selecting previously unselected package r-cran-vctrs.
Preparing to unpack .../141-r-cran-vctrs_0.6.5-1_i386.deb ...
Unpacking r-cran-vctrs (0.6.5-1) ...
Selecting previously unselected package r-cran-pillar.
Preparing to unpack .../142-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
Selecting previously unselected package r-cran-pkgconfig.
Preparing to unpack .../143-r-cran-pkgconfig_2.0.3-2_all.deb ...
Unpacking r-cran-pkgconfig (2.0.3-2) ...
Selecting previously unselected package r-cran-tibble.
Preparing to unpack .../144-r-cran-tibble_3.2.1+dfsg-2_i386.deb ...
Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
Selecting previously unselected package r-cran-withr.
Preparing to unpack .../145-r-cran-withr_3.0.2+dfsg-1_all.deb ...
Unpacking r-cran-withr (3.0.2+dfsg-1) ...
Selecting previously unselected package r-cran-ggplot2.
Preparing to unpack .../146-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ...
Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ...
Selecting previously unselected package r-cran-inline.
Preparing to unpack .../147-r-cran-inline_0.3.20-1_all.deb ...
Unpacking r-cran-inline (0.3.20-1) ...
Selecting previously unselected package seqtk.
Preparing to unpack .../148-seqtk_1.4-2_i386.deb ...
Unpacking seqtk (1.4-2) ...
Setting up libhtscodecs2:i386 (1.6.1-1) ...
Setting up media-types (10.1.0) ...
Setting up libpipeline1:i386 (1.5.8-1) ...
Setting up libgraphite2-3:i386 (1.3.14-2+b1) ...
Setting up libpixman-1-0:i386 (0.44.0-3) ...
Setting up libsharpyuv0:i386 (1.4.0-0.1+b1) ...
Setting up libxau6:i386 (1:1.0.11-1) ...
Setting up libxdmcp6:i386 (1:1.1.5-1) ...
Setting up libkeyutils1:i386 (1.6.3-4) ...
Setting up libxcb1:i386 (1.17.0-2+b1) ...
Setting up libicu72:i386 (72.1-5+b1) ...
Setting up liblerc4:i386 (4.0.0+ds-5) ...
Setting up seqtk (1.4-2) ...
Setting up bsdextrautils (2.40.2-12) ...
Setting up libdatrie1:i386 (0.2.13-3+b1) ...
Setting up libmagic-mgc (1:5.45-3+b1) ...
Setting up libxcb-render0:i386 (1.17.0-2+b1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libtirpc-common (1.3.4+ds-1.3) ...
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.20) ...
Setting up libbrotli1:i386 (1.1.0-2+b6) ...
Setting up libmagic1t64:i386 (1:5.45-3+b1) ...
Setting up x11-common (1:7.7+23.1) ...
invoke-rc.d: could not determine current runlevel
Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix.
Setting up libpsl5t64:i386 (0.21.2-1.1+b1) ...
Setting up libnghttp2-14:i386 (1.64.0-1) ...
Setting up libdeflate0:i386 (1.22-1) ...
Setting up gettext-base (0.22.5-2) ...
Setting up m4 (1.4.19-4) ...
Setting up libxcb-shm0:i386 (1.17.0-2+b1) ...
Setting up libcom-err2:i386 (1.47.2~rc1-2) ...
Setting up file (1:5.45-3+b1) ...
Setting up libjbig0:i386 (2.1-6.1+b2) ...
Setting up libelf1t64:i386 (0.192-4) ...
Setting up libkrb5support0:i386 (1.21.3-3) ...
Setting up libsasl2-modules-db:i386 (2.1.28+dfsg1-8) ...
Setting up tzdata (2024b-4) ...
Current default time zone: 'Etc/UTC'
Local time is now: Sun Jan 18 20:49:24 UTC 2026.
Universal Time is now: Sun Jan 18 20:49:24 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
Setting up zip (3.0-14) ...
Setting up autotools-dev (20220109.1) ...
Setting up libglib2.0-0t64:i386 (2.82.4-1) ...
No schema files found: doing nothing.
Setting up libblas3:i386 (3.12.0-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode
Setting up libjpeg62-turbo:i386 (1:2.1.5-3+b1) ...
Setting up libx11-data (2:1.8.10-2) ...
Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libfribidi0:i386 (1.0.16-1) ...
Setting up libproc2-0:i386 (2:4.0.4-6) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:i386 (1.6.44-3) ...
Setting up libtcl8.6:i386 (8.6.15+dfsg-2) ...
Setting up autopoint (0.22.5-2) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up libk5crypto3:i386 (1.21.3-3) ...
Setting up libsasl2-2:i386 (2.1.28+dfsg1-8) ...
Setting up libgfortran5:i386 (14.2.0-8) ...
Setting up autoconf (2.72-3) ...
Setting up libnghttp3-9:i386 (1.6.0-2) ...
Setting up libwebp7:i386 (1.4.0-0.1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up libtiff6:i386 (4.5.1+git230720-5) ...
Setting up libuchardet0:i386 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-6) ...
Setting up libx11-6:i386 (2:1.8.10-2) ...
Setting up libthai-data (0.1.29-2) ...
Setting up netbase (6.4) ...
Setting up libngtcp2-16:i386 (1.9.1-1) ...
Setting up libkrb5-3:i386 (1.21.3-3) ...
Setting up libssh2-1t64:i386 (1.11.1-1) ...
Setting up openssl (3.3.2-2) ...
Setting up readline-common (8.2-5) ...
Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libngtcp2-crypto-gnutls8:i386 (1.9.1-1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.14.0-1) ...
Setting up libice6:i386 (2:1.1.1-1) ...
Setting up liblapack3:i386 (3.12.0-4) ...
update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode
Setting up gettext (0.22.5-2) ...
Setting up libxrender1:i386 (1:0.9.10-1.1+b2) ...
Setting up libtool (2.4.7-8) ...
Setting up fontconfig-config (2.15.0-1.1+b1) ...
Setting up libxext6:i386 (2:1.3.4-1+b2) ...
Setting up libldap-2.5-0:i386 (2.5.18+dfsg-3+b1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:i386 (0.1.29-2+b1) ...
Setting up ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
146 added, 0 removed; done.
Setting up libfreetype6:i386 (2.13.3+dfsg-1) ...
Setting up libgssapi-krb5-2:i386 (1.21.3-3) ...
Setting up ucf (3.0045) ...
Setting up libreadline8t64:i386 (8.2-5) ...
Setting up dh-strip-nondeterminism (1.14.0-1) ...
Setting up groff-base (1.23.0-6) ...
Setting up libharfbuzz0b:i386 (10.1.0-1) ...
Setting up libxss1:i386 (1:1.2.3-1+b2) ...
Setting up libfontconfig1:i386 (2.15.0-1.1+b1) ...
Setting up libsm6:i386 (2:1.2.4-1) ...
Setting up libpaper1:i386 (1.1.29+b2) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.15.0-1.1+b1) ...
Regenerating fonts cache... done.
Setting up libxft2:i386 (2.3.6-1+b2) ...
Setting up libcurl4t64:i386 (8.11.1-1) ...
Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libtk8.6:i386 (8.6.15-1) ...
Setting up libpango-1.0-0:i386 (1.55.0+ds-3) ...
Setting up libcurl3t64-gnutls:i386 (8.11.1-1) ...
Setting up libpaper-utils (1.1.29+b2) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:i386 (1.18.2-2) ...
Setting up libxt6t64:i386 (1:1.2.1-1.2+b1) ...
Setting up libnsl2:i386 (1.3.0-3+b3) ...
Setting up libhts3t64:i386 (1.20+ds-2) ...
Setting up libpangoft2-1.0-0:i386 (1.55.0+ds-3) ...
Setting up libpangocairo-1.0-0:i386 (1.55.0+ds-3) ...
Setting up libpython3.12-stdlib:i386 (3.12.8-3) ...
Setting up python3.12 (3.12.8-3) ...
Setting up debhelper (13.20) ...
Setting up r-base-core (4.4.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-labeling (0.4.3-1) ...
Setting up r-cran-lattice (0.22-6-1) ...
Setting up r-cran-nlme (3.1.166-1) ...
Setting up r-cran-farver (2.1.2-1) ...
Setting up r-cran-viridislite (0.4.2-2) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up libpython3-stdlib:i386 (3.12.6-1) ...
Setting up r-cran-codetools (0.2-20-1) ...
Setting up r-cran-inline (0.3.20-1) ...
Setting up r-cran-rlang (1.1.4-1) ...
Setting up r-cran-withr (3.0.2+dfsg-1) ...
Setting up r-cran-iterators (1.0.14-1) ...
Setting up r-cran-foreach (1.5.2-1) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-mass (7.3-61-1) ...
Setting up python3 (3.12.6-1) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up r-cran-glue (1.8.0-1) ...
Setting up r-cran-gam (1.22-5-1) ...
Setting up r-cran-cli (3.6.3-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-cran-isoband (0.2.7-1) ...
Setting up r-cran-gtable (0.3.6+dfsg-1) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up r-cran-matrix (1.7-1-1) ...
Setting up r-cran-mgcv (1.9-1-1) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up python3-more-itertools (10.5.0-1) ...
Setting up python3-pysam (0.22.1+ds-2+b2) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up r-cran-munsell (0.5.1-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up r-cran-scales (1.3.0-1) ...
Setting up python3-pkg-resources (75.2.0-1) ...
Setting up python3-setuptools (75.2.0-1) ...
Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
Setting up dh-python (6.20241024) ...
Processing triggers for libc-bin (2.40-4) ...
Processing triggers for ca-certificates (20240203) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for trixie
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/mapdamage-2.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mapdamage_2.2.2+dfsg-1_source.changes
dpkg-buildpackage: info: source package mapdamage
dpkg-buildpackage: info: source version 2.2.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_auto_clean
I: pybuild base:311: python3.12 setup.py clean
'build/bdist.linux-i686' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
rm -f mapdamage/_version.py
rm -f mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Fragmisincorporation_plot.pdf mapdamage/tests/results/Length_plot.pdf mapdamage/tests/results/Length_plot.pdf
rm -f mapdamage/tests/fake1.fasta.fai mapdamage/tests/results/3pGtoA_freq.txt mapdamage/tests/results/5pCtoT_freq.txt mapdamage/tests/results/Runtime_log.txt mapdamage/tests/results/dnacomp.txt mapdamage/tests/results/lgdistribution.txt mapdamage/tests/results/misincorporation.txt mapdamage/tests/test.rescaled.sam
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --with python3 --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config
dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py build
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
cd mapdamage && \
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path:/build/reproducible-path/mapdamage-2.2.2+dfsg/bin \
PYTHONPATH=/build/reproducible-path/mapdamage-2.2.2+dfsg/.pybuild/cpython3_3.12/build \
python3 mp_test.py
Started with the command: /build/reproducible-path/mapdamage-2.2.2+dfsg/bin/mapDamage -i tests/test.bam -r tests/fake1.fasta -d tests/results --no-stats
additional tests/results/Length_plot.pdf generated
Successful run
Missing the following R libraries 'Rcpp' and 'RcppGSL'
The Bayesian estimation has been disabled
Reading from 'tests/test.bam'
Writing results to 'tests/results/'
pdf tests/results/Fragmisincorporation_plot.pdf generated
..
----------------------------------------------------------------------
Ran 2 tests in 16.416s
OK
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/mapdamage/ -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/mapdamage-2.2.2+dfsg/debian/mapdamage
dh_install -O--buildsystem=pybuild
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
dh_installman -O--buildsystem=pybuild
debian/rules override_dh_python3
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_python3 --no-ext-rename
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_installsystemduser -O--buildsystem=pybuild
dh_perl -O--buildsystem=pybuild
dh_link -O--buildsystem=pybuild
dh_strip_nondeterminism -O--buildsystem=pybuild
dh_compress -O--buildsystem=pybuild
debian/rules override_dh_fixperms
make[1]: Entering directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_fixperms
find debian -name checkLibraries.R -exec chmod +x \{\} \;
find debian -name runGeneral.R -exec chmod +x \{\} \;
make[1]: Leaving directory '/build/reproducible-path/mapdamage-2.2.2+dfsg'
dh_missing -O--buildsystem=pybuild
dh_installdeb -O--buildsystem=pybuild
dh_gencontrol -O--buildsystem=pybuild
dh_md5sums -O--buildsystem=pybuild
dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'mapdamage' in '../mapdamage_2.2.2+dfsg-1_all.deb'.
dpkg-genbuildinfo --build=binary -O../mapdamage_2.2.2+dfsg-1_i386.buildinfo
dpkg-genchanges --build=binary -O../mapdamage_2.2.2+dfsg-1_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: including full source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/40152/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/40152 and its subdirectories
I: Current time: Mon Jan 19 10:52:47 +14 2026
I: pbuilder-time-stamp: 1768769567