I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 28 11:12:37 -12 2026 I: pbuilder-time-stamp: 1772320357 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [mummer_3.23+dfsg-8.dsc] I: copying [./mummer_3.23+dfsg.orig.tar.xz] I: copying [./mummer_3.23+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mummer_3.23+dfsg-8.dsc: unsupported subcommand dpkg-source: info: extracting mummer in mummer-3.23+dfsg dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch dpkg-source: info: applying mummerplot.patch dpkg-source: info: applying remove-csh-dependency.patch dpkg-source: info: applying remove-csh-from-doc.patch dpkg-source: info: applying reproducible-build.patch dpkg-source: info: applying gnuplot.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/64064/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='413307ea16a247fc8a3b53de1169fdc4' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='64064' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.bEoFwowR/pbuilderrc_ZUnr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.bEoFwowR/b1 --logfile b1/build.log mummer_3.23+dfsg-8.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos6-i386 6.1.0-30-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.124-1 (2025-01-12) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/64064/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19842 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-recommended; however: Package texlive-latex-recommended is not installed. pbuilder-satisfydepends-dummy depends on texlive-fonts-recommended; however: Package texlive-fonts-recommended is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcairo2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libglib2.0-0t64{a} libgraphite2-3{a} libharfbuzz0b{a} libice6{a} libicu72{a} libkpathsea6{a} libmagic-mgc{a} libmagic1t64{a} libmpfi0{a} libpaper-utils{a} libpaper2{a} libpipeline1{a} libpixman-1-0{a} libpng16-16t64{a} libpotrace0{a} libproc2-0{a} libptexenc1{a} libsm6{a} libsynctex2{a} libteckit0{a} libtexlua53-5{a} libtext-charwidth-perl{a} libtext-wrapi18n-perl{a} libtool{a} libuchardet0{a} libunistring5{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6t64{a} libzzip-0-13t64{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-fonts-recommended{a} texlive-latex-base{a} texlive-latex-recommended{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl linux-sysctl-defaults lmodern lynx psmisc shared-mime-info tex-gyre tipa wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 82.1 MB of archives. After unpacking 257 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-6 [65.7 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-6 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-4 [201 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-1 [96.1 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libtext-charwidth-perl i386 0.04-11+b4 [9656 B] Get: 14 http://deb.debian.org/debian trixie/main i386 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get: 15 http://deb.debian.org/debian trixie/main i386 ucf all 3.0048 [42.0 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-4 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.23 [90.6 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-2 [539 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 27 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-4 [1632 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 debhelper all 13.23 [919 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-2 [317 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 fonts-lmodern all 2.005-1 [4540 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.44-3 [288 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-2 [402 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libpixman-1-0 i386 0.44.0-3 [246 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libxcb-render0 i386 1.17.0-2+b1 [116 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libcairo2 i386 1.18.2-2 [591 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.6-1 [21.2 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.82.4-2 [1573 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+23.2 [216 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libice6 i386 2:1.1.1-1 [67.8 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libkpathsea6 i386 2024.20240313.70630+ds-5+b1 [160 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libmpfi0 i386 1.5.4+ds-4 [38.8 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libpaper2 i386 2.2.5-0.3 [16.8 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libpaper-utils i386 2.2.5-0.3 [16.1 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libpotrace0 i386 1.16-2+b2 [24.5 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libptexenc1 i386 2024.20240313.70630+ds-5+b1 [50.3 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libsm6 i386 2:1.2.4-1 [35.9 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libsynctex2 i386 2024.20240313.70630+ds-5+b1 [65.9 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libteckit0 i386 2.5.12+ds1-1+b1 [285 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libtexlua53-5 i386 2024.20240313.70630+ds-5+b1 [129 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libxt6t64 i386 1:1.2.1-1.2+b2 [194 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libxmu6 i386 2:1.1.3-3+b4 [60.8 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libxpm4 i386 1:3.5.17-1+b3 [58.3 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 libxaw7 i386 2:1.0.16-1 [220 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libxi6 i386 2:1.8.2-1 [81.2 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libzzip-0-13t64 i386 0.13.72+dfsg.1-1.2+b1 [58.1 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 tex-common all 6.18 [32.5 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 texlive-binaries i386 2024.20240313.70630+ds-5+b1 [8373 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 xdg-utils all 1.2.1-2 [75.8 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 texlive-base all 2024.20241115-1 [22.7 MB] Get: 83 http://deb.debian.org/debian trixie/main i386 texlive-fonts-recommended all 2024.20241115-1 [4991 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 texlive-latex-base all 2024.20241115-1 [1278 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 texlive-latex-recommended all 2024.20241115-1 [8757 kB] Fetched 82.1 MB in 1s (140 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19842 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_i386.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-4_i386.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-1_i386.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package libtext-charwidth-perl:i386. Preparing to unpack .../12-libtext-charwidth-perl_0.04-11+b4_i386.deb ... Unpacking libtext-charwidth-perl:i386 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../13-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package ucf. Preparing to unpack .../14-ucf_3.0048_all.deb ... Moving old data out of the way Unpacking ucf (3.0048) ... Selecting previously unselected package m4. Preparing to unpack .../15-m4_1.4.19-5_i386.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../16-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../17-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../18-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../19-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../20-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../21-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../22-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../23-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../24-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../25-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:i386. Preparing to unpack .../26-libelf1t64_0.192-4_i386.deb ... Unpacking libelf1t64:i386 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.15-1+b1_i386.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:i386. Preparing to unpack .../28-libunistring5_1.3-1_i386.deb ... Unpacking libunistring5:i386 (1.3-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../29-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../30-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../31-gettext_0.22.5-4_i386.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../32-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../33-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../34-debhelper_13.23_all.deb ... Unpacking debhelper (13.23) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../35-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../36-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../37-fontconfig-config_2.15.0-2_i386.deb ... Unpacking fontconfig-config (2.15.0-2) ... Selecting previously unselected package fonts-lmodern. Preparing to unpack .../38-fonts-lmodern_2.005-1_all.deb ... Unpacking fonts-lmodern (2.005-1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../39-libbrotli1_1.1.0-2+b6_i386.deb ... Unpacking libbrotli1:i386 (1.1.0-2+b6) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../40-libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package libpng16-16t64:i386. Preparing to unpack .../41-libpng16-16t64_1.6.44-3_i386.deb ... Unpacking libpng16-16t64:i386 (1.6.44-3) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../42-libfreetype6_2.13.3+dfsg-1_i386.deb ... Unpacking libfreetype6:i386 (2.13.3+dfsg-1) ... Selecting previously unselected package libfontconfig1:i386. Preparing to unpack .../43-libfontconfig1_2.15.0-2_i386.deb ... Unpacking libfontconfig1:i386 (2.15.0-2) ... Selecting previously unselected package libpixman-1-0:i386. Preparing to unpack .../44-libpixman-1-0_0.44.0-3_i386.deb ... Unpacking libpixman-1-0:i386 (0.44.0-3) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../45-libxau6_1%3a1.0.11-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../46-libxdmcp6_1%3a1.1.5-1_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../47-libxcb1_1.17.0-2+b1_i386.deb ... Unpacking libxcb1:i386 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../48-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:i386. Preparing to unpack .../49-libx11-6_2%3a1.8.10-2_i386.deb ... Unpacking libx11-6:i386 (2:1.8.10-2) ... Selecting previously unselected package libxcb-render0:i386. Preparing to unpack .../50-libxcb-render0_1.17.0-2+b1_i386.deb ... Unpacking libxcb-render0:i386 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:i386. Preparing to unpack .../51-libxcb-shm0_1.17.0-2+b1_i386.deb ... Unpacking libxcb-shm0:i386 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:i386. Preparing to unpack .../52-libxext6_2%3a1.3.4-1+b3_i386.deb ... Unpacking libxext6:i386 (2:1.3.4-1+b3) ... Selecting previously unselected package libxrender1:i386. Preparing to unpack .../53-libxrender1_1%3a0.9.10-1.1+b4_i386.deb ... Unpacking libxrender1:i386 (1:0.9.10-1.1+b4) ... Selecting previously unselected package libcairo2:i386. Preparing to unpack .../54-libcairo2_1.18.2-2_i386.deb ... Unpacking libcairo2:i386 (1.18.2-2) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../55-libffi8_3.4.6-1_i386.deb ... Unpacking libffi8:i386 (3.4.6-1) ... Selecting previously unselected package libglib2.0-0t64:i386. Preparing to unpack .../56-libglib2.0-0t64_2.82.4-2_i386.deb ... Unpacking libglib2.0-0t64:i386 (2.82.4-2) ... Selecting previously unselected package libgraphite2-3:i386. Preparing to unpack .../57-libgraphite2-3_1.3.14-2+b1_i386.deb ... Unpacking libgraphite2-3:i386 (1.3.14-2+b1) ... Selecting previously unselected package libharfbuzz0b:i386. Preparing to unpack .../58-libharfbuzz0b_10.2.0-1_i386.deb ... Unpacking libharfbuzz0b:i386 (10.2.0-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../59-x11-common_1%3a7.7+23.2_all.deb ... Unpacking x11-common (1:7.7+23.2) ... Selecting previously unselected package libice6:i386. Preparing to unpack .../60-libice6_2%3a1.1.1-1_i386.deb ... Unpacking libice6:i386 (2:1.1.1-1) ... Selecting previously unselected package libkpathsea6:i386. Preparing to unpack .../61-libkpathsea6_2024.20240313.70630+ds-5+b1_i386.deb ... Unpacking libkpathsea6:i386 (2024.20240313.70630+ds-5+b1) ... Selecting previously unselected package libmpfi0:i386. Preparing to unpack .../62-libmpfi0_1.5.4+ds-4_i386.deb ... Unpacking libmpfi0:i386 (1.5.4+ds-4) ... Selecting previously unselected package libpaper2:i386. Preparing to unpack .../63-libpaper2_2.2.5-0.3_i386.deb ... Unpacking libpaper2:i386 (2.2.5-0.3) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../64-libpaper-utils_2.2.5-0.3_i386.deb ... Unpacking libpaper-utils (2.2.5-0.3) ... Selecting previously unselected package libpotrace0:i386. Preparing to unpack .../65-libpotrace0_1.16-2+b2_i386.deb ... Unpacking libpotrace0:i386 (1.16-2+b2) ... Selecting previously unselected package libptexenc1:i386. Preparing to unpack .../66-libptexenc1_2024.20240313.70630+ds-5+b1_i386.deb ... Unpacking libptexenc1:i386 (2024.20240313.70630+ds-5+b1) ... Selecting previously unselected package libsm6:i386. Preparing to unpack .../67-libsm6_2%3a1.2.4-1_i386.deb ... Unpacking libsm6:i386 (2:1.2.4-1) ... Selecting previously unselected package libsynctex2:i386. Preparing to unpack .../68-libsynctex2_2024.20240313.70630+ds-5+b1_i386.deb ... Unpacking libsynctex2:i386 (2024.20240313.70630+ds-5+b1) ... Selecting previously unselected package libteckit0:i386. Preparing to unpack .../69-libteckit0_2.5.12+ds1-1+b1_i386.deb ... Unpacking libteckit0:i386 (2.5.12+ds1-1+b1) ... Selecting previously unselected package libtexlua53-5:i386. Preparing to unpack .../70-libtexlua53-5_2024.20240313.70630+ds-5+b1_i386.deb ... Unpacking libtexlua53-5:i386 (2024.20240313.70630+ds-5+b1) ... Selecting previously unselected package libxt6t64:i386. Preparing to unpack .../71-libxt6t64_1%3a1.2.1-1.2+b2_i386.deb ... Unpacking libxt6t64:i386 (1:1.2.1-1.2+b2) ... Selecting previously unselected package libxmu6:i386. Preparing to unpack .../72-libxmu6_2%3a1.1.3-3+b4_i386.deb ... Unpacking libxmu6:i386 (2:1.1.3-3+b4) ... Selecting previously unselected package libxpm4:i386. Preparing to unpack .../73-libxpm4_1%3a3.5.17-1+b3_i386.deb ... Unpacking libxpm4:i386 (1:3.5.17-1+b3) ... Selecting previously unselected package libxaw7:i386. Preparing to unpack .../74-libxaw7_2%3a1.0.16-1_i386.deb ... Unpacking libxaw7:i386 (2:1.0.16-1) ... Selecting previously unselected package libxi6:i386. Preparing to unpack .../75-libxi6_2%3a1.8.2-1_i386.deb ... Unpacking libxi6:i386 (2:1.8.2-1) ... Selecting previously unselected package libzzip-0-13t64:i386. Preparing to unpack .../76-libzzip-0-13t64_0.13.72+dfsg.1-1.2+b1_i386.deb ... Unpacking libzzip-0-13t64:i386 (0.13.72+dfsg.1-1.2+b1) ... Selecting previously unselected package t1utils. Preparing to unpack .../77-t1utils_1.41-4_i386.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package tex-common. Preparing to unpack .../78-tex-common_6.18_all.deb ... Unpacking tex-common (6.18) ... Selecting previously unselected package texlive-binaries. Preparing to unpack .../79-texlive-binaries_2024.20240313.70630+ds-5+b1_i386.deb ... Unpacking texlive-binaries (2024.20240313.70630+ds-5+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../80-xdg-utils_1.2.1-2_all.deb ... Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package texlive-base. Preparing to unpack .../81-texlive-base_2024.20241115-1_all.deb ... Unpacking texlive-base (2024.20241115-1) ... Selecting previously unselected package texlive-fonts-recommended. Preparing to unpack .../82-texlive-fonts-recommended_2024.20241115-1_all.deb ... Unpacking texlive-fonts-recommended (2024.20241115-1) ... Selecting previously unselected package texlive-latex-base. Preparing to unpack .../83-texlive-latex-base_2024.20241115-1_all.deb ... Unpacking texlive-latex-base (2024.20241115-1) ... Selecting previously unselected package texlive-latex-recommended. Preparing to unpack .../84-texlive-latex-recommended_2024.20241115-1_all.deb ... Unpacking texlive-latex-recommended (2024.20241115-1) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libgraphite2-3:i386 (1.3.14-2+b1) ... Setting up libpixman-1-0:i386 (0.44.0-3) ... Setting up libtext-charwidth-perl:i386 (0.04-11+b4) ... Setting up libxau6:i386 (1:1.0.11-1) ... Setting up libxdmcp6:i386 (1:1.1.5-1) ... Setting up libxcb1:i386 (1.17.0-2+b1) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:i386 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.23) ... Setting up libbrotli1:i386 (1.1.0-2+b6) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.2) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libxcb-shm0:i386 (1.17.0-2+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libzzip-0-13t64:i386 (0.13.72+dfsg.1-1.2+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libteckit0:i386 (2.5.12+ds1-1+b1) ... Setting up t1utils (1.41-4) ... Setting up libtexlua53-5:i386 (2024.20240313.70630+ds-5+b1) ... Setting up libproc2-0:i386 (2:4.0.4-6) ... Setting up libunistring5:i386 (1.3-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:i386 (1.6.44-3) ... Setting up autopoint (0.22.5-4) ... Setting up libmpfi0:i386 (1.5.4+ds-4) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libkpathsea6:i386 (2024.20240313.70630+ds-5+b1) ... Setting up autoconf (2.72-3) ... Setting up libffi8:i386 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up fonts-lmodern (2.005-1) ... Setting up libx11-6:i386 (2:1.8.10-2) ... Setting up libpaper2:i386 (2.2.5-0.3) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libsynctex2:i386 (2024.20240313.70630+ds-5+b1) ... Setting up libpotrace0:i386 (1.16-2+b2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up libice6:i386 (2:1.1.1-1) ... Setting up gettext (0.22.5-4) ... Setting up libxpm4:i386 (1:3.5.17-1+b3) ... Setting up libxrender1:i386 (1:0.9.10-1.1+b4) ... Setting up libtool (2.5.4-2) ... Setting up fontconfig-config (2.15.0-2) ... Setting up libxext6:i386 (2:1.3.4-1+b3) ... Setting up libpaper-utils (2.2.5-0.3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libglib2.0-0t64:i386 (2.82.4-2) ... No schema files found: doing nothing. Setting up libptexenc1:i386 (2024.20240313.70630+ds-5+b1) ... Setting up libfreetype6:i386 (2.13.3+dfsg-1) ... Setting up ucf (3.0048) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libharfbuzz0b:i386 (10.2.0-1) ... Setting up libfontconfig1:i386 (2.15.0-2) ... Setting up libsm6:i386 (2:1.2.4-1) ... Setting up libxi6:i386 (2:1.8.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:i386 (1.18.2-2) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxt6t64:i386 (1:1.2.1-1.2+b2) ... Setting up libxmu6:i386 (2:1.1.3-3+b4) ... Setting up debhelper (13.23) ... Setting up libxaw7:i386 (2:1.0.16-1) ... Setting up texlive-binaries (2024.20240313.70630+ds-5+b1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2024.20241115-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2024.20241115-1) ... Setting up texlive-latex-recommended (2024.20241115-1) ... Setting up texlive-fonts-recommended (2024.20241115-1) ... Processing triggers for libc-bin (2.40-5) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mummer-3.23+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mummer_3.23+dfsg-8_source.changes dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j22 clean make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' rm -f *~ core* cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' rm -f *.o *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /build/reproducible-path/mummer-3.23+dfsg/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' rm -f *~ cd /build/reproducible-path/mummer-3.23+dfsg; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' cd /build/reproducible-path/mummer-3.23+dfsg/docs; make clean make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin [ -d /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer ] || mkdir -p /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j22 "INSTALL=install --strip-program=true" BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/build/reproducible-path/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' cd /build/reproducible-path/mummer-3.23+dfsg/src/kurtz; make mummer cd /build/reproducible-path/mummer-3.23+dfsg/src/tigr; make CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc" CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all cd /build/reproducible-path/mummer-3.23+dfsg/scripts; make all make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' cd libbasedir; make libbase.a make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' make[3]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 tigrinc.cc -c -o tigrinc.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 delta.cc -c -o delta.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 sw_align.cc -c -o sw_align.o /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 translate.cc -c -o translate.o make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c cp -a ../debian/sh-replacement-scripts/exact-tandems /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/exact-tandems /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mapview cp -a ../debian/sh-replacement-scripts/run-mummer3 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummerplot chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/promer chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer1 chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/run-mummer3 /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig /usr/bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/nucmer2xfig chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/scripts' ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c tigrinc.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)': tigrinc.cc:335:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 335 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ tigrinc.cc: In function 'int Read_File(FILE*, long int&, std::map, char*>&, int)': tigrinc.cc:452:16: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 452 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c /usr/bin/gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/libbasedir -I/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c /usr/bin/gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz/mm3src' make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/kurtz' /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/combineMUMs /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/gaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mgaps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postnuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/postpro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prenuc /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/lib/mummer/prepro /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/repeat-match mgaps.cc: In function 'int Process_Cluster(Match_t*, int, char*)': mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function 'void Process_Matches(Match_t*, int, char*)': mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro 'DEFAULT_ERROR_FILE_NAME' 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ combineMUMs.cc: In function 'int Read_String(FILE*, char**, long int*, char*)': combineMUMs.cc:1481:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1481 | fgets (Line, MAX_LINE, fp); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta-filter /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-aligns /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-coords /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-tiling /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-snps /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/show-diff /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2blocks /usr/bin/g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mummer-3.23+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf; chmod 755 /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/delta2maf delta2blocks.cc: In function 'void printAlignments(std::vector, char*, char*, char*, char*)': delta2blocks.cc:408:23: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format '%d' expects argument of type 'int', but argument 5 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format '%d' expects argument of type 'int', but argument 7 has type 'long int' [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2maf.cc: In function 'void printAlignments(std::vector, char*, char*, std::map, char*>&)': delta2maf.cc:547:24: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long int' [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:27: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:30: warning: format '%d' expects argument of type 'int', but argument 4 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:36: warning: format '%d' expects argument of type 'int', but argument 6 has type 'long int' [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:34: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:28: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:710:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:30: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:24: warning: format '%s' expects argument of type 'char*', but argument 2 has type 'char (*)[(Screen_Width + 1)]' [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* show-coords.cc: In function 'void printBtab(std::vector)': show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ make[3]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/src/tigr' make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' /usr/bin/make -C docs make[2]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg/docs' pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2024-11-01> L3 programming layer <2024-11-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/06/29 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 36 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 4. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 134082 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2025/dev/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2024-11-01> L3 programming layer <2024-11-02> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2024/06/29 v1.4n Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-pdftex.def) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ts1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 60--61 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}{/usr/share/texlive/texmf- dist/fonts/enc/dvips/base/8r.enc}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 225--225 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 298--298 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information)< /usr/share/texlive/texmf-dist/fonts/type1/urw/times/utmb8a.pfb> Output written on maxmat3man.pdf (7 pages, 133416 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg/docs' make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_auto_test make -j22 check make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' check complete make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' create-stamp debian/debhelper-build-stamp debian/rules override_dh_prep make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_prep -X debian/tmp make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' mv /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/annotate /build/reproducible-path/mummer-3.23+dfsg/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mummer-3.23+dfsg' dh_compress -Xpdf make[1]: Leaving directory '/build/reproducible-path/mummer-3.23+dfsg' dh_fixperms dh_missing dh_dwz -a dwz: debian/mummer/usr/bin/mummer: DWARF compression not beneficial - old size 51112 new size 51438 dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-8_i386.deb'. dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-8_i386.deb'. dpkg-deb: building package 'mummer-doc' in '../mummer-doc_3.23+dfsg-8_all.deb'. dpkg-genbuildinfo --build=binary -O../mummer_3.23+dfsg-8_i386.buildinfo dpkg-genchanges --build=binary -O../mummer_3.23+dfsg-8_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/64064 and its subdirectories I: Current time: Sat Feb 28 11:14:05 -12 2026 I: pbuilder-time-stamp: 1772320445