I: pbuilder: network access will be disabled during build I: Current time: Tue Mar 24 05:35:33 -12 2026 I: pbuilder-time-stamp: 1774373733 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [pyensembl_2.3.13-2.dsc] I: copying [./pyensembl_2.3.13.orig.tar.xz] I: copying [./pyensembl_2.3.13-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./pyensembl_2.3.13-2.dsc: unsupported subcommand dpkg-source: info: extracting pyensembl in pyensembl-2.3.13 dpkg-source: info: unpacking pyensembl_2.3.13.orig.tar.xz dpkg-source: info: unpacking pyensembl_2.3.13-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-benchmark.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3833/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=22 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='e399d33ab3b84c769a3df0025c26a33e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3833' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.AXMlumrf/pbuilderrc_30v7 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.AXMlumrf/b1 --logfile b1/build.log pyensembl_2.3.13-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://213.165.73.152:3128' I: uname -a Linux ionos16-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3833/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-setuptools, python3-all, python3-pandas, python3-numpy, python3-datacache, python3-serializable, python3-memoized-property, python3-gtfparse, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-datacache; however: Package python3-datacache is not installed. pbuilder-satisfydepends-dummy depends on python3-serializable; however: Package python3-serializable is not installed. pbuilder-satisfydepends-dummy depends on python3-memoized-property; however: Package python3-memoized-property is not installed. pbuilder-satisfydepends-dummy depends on python3-gtfparse; however: Package python3-gtfparse is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-datacache{a} python3-dateutil{a} python3-gtfparse{a} python3-idna{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-memoized-property{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pluggy{a} python3-pytest{a} python3-pytz{a} python3-requests{a} python3-serializable{a} python3-setuptools{a} python3-typechecks{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-openpyxl python3-pygments python3-scipy python3-tables wget 0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded. Need to get 55.7 MB of archives. After unpacking 265 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.1-2 [27.0 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B] Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.1-2 [28.0 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.9-1 [816 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.9-1 [2238 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 openssl i386 3.4.0-2 [1427 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 ca-certificates all 20241223 [164 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 40 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 49 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 55 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.6.0-1 [720 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-16 [735 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 67 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.9-1 [1972 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.9-1 [681 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.1-2 [1052 B] Get: 76 http://deb.debian.org/debian trixie/main i386 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 77 http://deb.debian.org/debian trixie/main i386 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 python3-charset-normalizer i386 3.4.0-1+b1 [139 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 python3-pytz all 2025.1-3 [150 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 python3-tz all 2025.1-3 [4004 B] Get: 83 http://deb.debian.org/debian trixie/main i386 python3-pandas-lib i386 2.2.3+dfsg-8 [6848 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 python3-pandas all 2.2.3+dfsg-8 [3097 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 python3-idna all 3.10-1 [42.0 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 python3-urllib3 all 2.3.0-1 [114 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 python3-typechecks all 0.1.0+ds-4 [4580 B] Get: 90 http://deb.debian.org/debian trixie/main i386 python3-datacache all 1.4.1-2 [12.9 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 python3-gtfparse all 1.3.0+ds-2 [10.2 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 python3-iniconfig all 1.1.1-2 [6396 B] Get: 93 http://deb.debian.org/debian trixie/main i386 python3-memoized-property all 1.0.3-2 [5552 B] Get: 94 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 python3-pytest all 8.3.4-1 [250 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 python3-serializable all 0.4.1+ds-2 [8400 B] Fetched 55.7 MB in 0s (121 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19795 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.2-1_i386.deb ... Unpacking libpython3.13-minimal:i386 (3.13.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.6.4-1_i386.deb ... Unpacking libexpat1:i386 (2.6.4-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.2-1_i386.deb ... Unpacking python3.13-minimal (3.13.2-1) ... Setting up libpython3.13-minimal:i386 (3.13.2-1) ... Setting up libexpat1:i386 (2.6.4-1) ... Setting up python3.13-minimal (3.13.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20129 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.1-2_i386.deb ... Unpacking python3-minimal (3.13.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:i386. Preparing to unpack .../4-libffi8_3.4.7-1_i386.deb ... Unpacking libffi8:i386 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:i386. Preparing to unpack .../6-libreadline8t64_8.2-6_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8 to /lib/i386-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libhistory.so.8.2 to /lib/i386-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8 to /lib/i386-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/i386-linux-gnu/libreadline.so.8.2 to /lib/i386-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:i386 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:i386. Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_i386.deb ... Unpacking libpython3.13-stdlib:i386 (3.13.2-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.2-1_i386.deb ... Unpacking python3.13 (3.13.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.13.1-2_i386.deb ... Unpacking libpython3-stdlib:i386 (3.13.1-2) ... Setting up python3-minimal (3.13.1-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21139 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.1-2_i386.deb ... Unpacking python3 (3.13.1-2) ... Selecting previously unselected package libpython3.12-minimal:i386. 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Preparing to unpack .../55-liblapack3_3.12.1-2_i386.deb ... Unpacking liblapack3:i386 (3.12.1-2) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../56-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:i386. Preparing to unpack .../57-libtirpc3t64_1.3.4+ds-1.3+b1_i386.deb ... Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3 to /lib/i386-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/i386-linux-gnu/libtirpc.so.3.0.0 to /lib/i386-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:i386. Preparing to unpack .../58-libnsl2_1.3.0-3+b3_i386.deb ... Unpacking libnsl2:i386 (1.3.0-3+b3) ... Selecting previously unselected package libpython3.12-stdlib:i386. Preparing to unpack .../59-libpython3.12-stdlib_3.12.9-1_i386.deb ... Unpacking libpython3.12-stdlib:i386 (3.12.9-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../60-python3.12_3.12.9-1_i386.deb ... Unpacking python3.12 (3.12.9-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../61-python3-all_3.13.1-2_i386.deb ... Unpacking python3-all (3.13.1-2) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../62-python3-certifi_2025.1.31+ds-1_all.deb ... Unpacking python3-certifi (2025.1.31+ds-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../63-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../64-python3-charset-normalizer_3.4.0-1+b1_i386.deb ... Unpacking python3-charset-normalizer (3.4.0-1+b1) ... Selecting previously unselected package python3-dateutil. 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Selecting previously unselected package python3-serializable. Preparing to unpack .../83-python3-serializable_0.4.1+ds-2_all.deb ... Unpacking python3-serializable (0.4.1+ds-2) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:i386 (1.5.8-1) ... Setting up libkeyutils1:i386 (1.6.3-4) ... Setting up libicu72:i386 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:i386 (1:5.45-3+b1) ... Setting up libpython3.12-minimal:i386 (3.12.9-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:i386 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libkrb5support0:i386 (1.21.3-4) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Mar 24 17:35:53 UTC 2026. Universal Time is now: Tue Mar 24 17:35:53 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libblas3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libunistring5:i386 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:i386 (1.21.3-4) ... Setting up libgfortran5:i386 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:i386 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:i386 (1.21.3-4) ... Setting up openssl (3.4.0-2) ... Setting up readline-common (8.2-6) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up python3.12-minimal (3.12.9-1) ... Setting up liblapack3:i386 (3.12.1-2) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libgssapi-krb5-2:i386 (1.21.3-4) ... Setting up libreadline8t64:i386 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:i386 (3.13.2-1) ... Setting up libpython3-stdlib:i386 (3.13.1-2) ... Setting up libtirpc3t64:i386 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.2-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.1-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-platformdirs (4.3.6-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-numpy (1:1.26.4+ds-13) ... Setting up python3-urllib3 (2.3.0-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libnsl2:i386 (1.3.0-3+b3) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up libpython3.12-stdlib:i386 (3.12.9-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typechecks (0.1.0+ds-4) ... Setting up python3-memoized-property (1.0.3-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-pytest (8.3.4-1) ... Setting up python3-pandas-lib:i386 (2.2.3+dfsg-8) ... Setting up python3.12 (3.12.9-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.13.1-2) ... Setting up debhelper (13.24.1) ... Setting up python3-pytz (2025.1-3) ... Setting up python3-serializable (0.4.1+ds-2) ... Setting up python3-tz (2025.1-3) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pandas (2.2.3+dfsg-8) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up python3-datacache (1.4.1-2) ... Setting up python3-gtfparse (1.3.0+ds-2) ... Setting up dh-python (6.20250108) ... Processing triggers for libc-bin (2.40-6) ... Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pyensembl-2.3.13/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pyensembl_2.3.13-2_source.changes dpkg-buildpackage: info: source package pyensembl dpkg-buildpackage: info: source version 2.3.13-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from pyensembl-2.3.13/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pyensembl-2.3.13' dh_auto_clean pybuild --clean -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py clean running clean removing '/build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:311: python3.13 setup.py clean running clean removing '/build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build' (and everything under it) 'build/bdist.linux-i686' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; rm -f pyensembl.egg-info/SOURCES.txt pyensembl.egg-info/requires.txt make[1]: Leaving directory '/build/reproducible-path/pyensembl-2.3.13' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/pyensembl.substvars debian/files rm -fr -- debian/pyensembl/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p "3.12 3.13" I: pybuild base:311: python3.12 setup.py config running config I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p "3.12 3.13" I: pybuild base:311: /usr/bin/python3.12 setup.py build running build running build_py creating /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl copying pyensembl/../requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/.. I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl copying pyensembl/../requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/.. dh_auto_test -O--buildsystem=pybuild pybuild --test --test-pytest -i python{version} -p "3.12 3.13" I: pybuild base:311: cd /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build; python3.12 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' ============================= test session starts ============================== platform linux -- Python 3.12.9, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.12 cachedir: .pytest_cache rootdir: /build/reproducible-path/pyensembl-2.3.13 plugins: typeguard-4.4.1 collecting ... collected 126 items / 98 deselected / 28 selected tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] tests/test_locus.py::test_locus_overlaps PASSED [ 10%] tests/test_locus.py::test_locus_contains PASSED [ 14%] tests/test_locus.py::test_position_offset PASSED [ 17%] tests/test_locus.py::test_range_offset PASSED [ 21%] tests/test_locus.py::test_locus_distance PASSED [ 25%] tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] tests/test_release_versions.py::test_version_is_none PASSED [ 60%] tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] tests/test_release_versions.py::test_int_version PASSED [ 67%] tests/test_release_versions.py::test_str_version PASSED [ 71%] tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] =============================== warnings summary =============================== pyensembl/shell.py:43 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources pyensembl/shell.py:74 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. release_group = root_group.add_argument_group() pyensembl/shell.py:96 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. path_group = root_group.add_argument_group() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 28 passed, 98 deselected, 3 warnings in 1.06s ================= I: pybuild base:311: cd /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build; python3.13 -m pytest -v -k 'not test_download_cache.py and not test_gene_ids.py and not test_gene_names.py and not test_gene_objects.py and not test_id_length.py and not test_search.py and not test_serialization.py and not test_transcript_ids.py and not test_transcript_objects.py and not test_contigs.py and not test_exon_id.py and not test_exon_object.py and not test_string_representation.py and not test_timings.py and not test_transcript_sequences.py and not test_transcript_support_level.py' ============================= test session starts ============================== platform linux -- Python 3.13.2, pytest-8.3.4, pluggy-1.5.0 -- /usr/bin/python3.13 cachedir: .pytest_cache rootdir: /build/reproducible-path/pyensembl-2.3.13 plugins: typeguard-4.4.1 collecting ... collected 126 items / 98 deselected / 28 selected tests/test_ensembl_object_properties.py::test_human_reference_name PASSED [ 3%] tests/test_locus.py::test_normalize_chromosome PASSED [ 7%] tests/test_locus.py::test_locus_overlaps PASSED [ 10%] tests/test_locus.py::test_locus_contains PASSED [ 14%] tests/test_locus.py::test_position_offset PASSED [ 17%] tests/test_locus.py::test_range_offset PASSED [ 21%] tests/test_locus.py::test_locus_distance PASSED [ 25%] tests/test_missing_genome_sources.py::test_transcript_fasta_only PASSED [ 28%] tests/test_missing_genome_sources.py::test_protein_fasta_only PASSED [ 32%] tests/test_missing_genome_sources.py::test_gtf_only PASSED [ 35%] tests/test_missing_genome_sources.py::test_gtf_transcript_only PASSED [ 39%] tests/test_missing_genome_sources.py::test_gtf_protein_only PASSED [ 42%] tests/test_mouse.py::test_mouse_ENSMUSG00000017167 PASSED [ 46%] tests/test_release_versions.py::test_version_too_old_1 PASSED [ 50%] tests/test_release_versions.py::test_version_too_old_47 PASSED [ 53%] tests/test_release_versions.py::test_version_is_not_numeric PASSED [ 57%] tests/test_release_versions.py::test_version_is_none PASSED [ 60%] tests/test_release_versions.py::test_max_ensembl_release PASSED [ 64%] tests/test_release_versions.py::test_int_version PASSED [ 67%] tests/test_release_versions.py::test_str_version PASSED [ 71%] tests/test_sequence_data.py::test_sequence_type PASSED [ 75%] tests/test_sequence_data.py::test_missing_sequence PASSED [ 78%] tests/test_sequence_data.py::test_clear_cache PASSED [ 82%] tests/test_shell.py::test_genome_selection_grch38 PASSED [ 85%] tests/test_ucsc_gtf.py::test_ucsc_gencode_gtf PASSED [ 89%] tests/test_ucsc_gtf.py::test_ucsc_gencode_genome PASSED [ 92%] tests/test_ucsc_gtf.py::test_ucsc_refseq_gtf PASSED [ 96%] tests/test_ucsc_gtf.py::test_ucsc_refseq_genome PASSED [100%] =============================== warnings summary =============================== pyensembl/shell.py:43 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py:43: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources pyensembl/shell.py:74 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py:74: DeprecationWarning: Nesting argument groups is deprecated. release_group = root_group.add_argument_group() pyensembl/shell.py:96 /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py:96: DeprecationWarning: Nesting argument groups is deprecated. path_group = root_group.add_argument_group() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================ 28 passed, 98 deselected, 3 warnings in 0.93s ================= rm -fr -- /tmp/dh-xdg-rundir-jRTRImFA create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/pyensembl.substvars rm -fr -- debian/.debhelper/generated/pyensembl/ debian/pyensembl/ debian/tmp/ dh_auto_install --destdir=debian/pyensembl/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl pybuild --install -i python{version} -p "3.12 3.13" --dest-dir=/build/reproducible-path/pyensembl-2.3.13/debian/pyensembl I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/ensembl_url_templates.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/database.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/species.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/normalization.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/locus_with_genome.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/ensembl_release.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/gene.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/shell.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/common.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/exon.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/ensembl_versions.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/transcript.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/reference_name.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/search.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/version.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/download_cache.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/genome.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/locus.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/__pycache__/sequence_data.cpython-312.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.12_pyensembl/build/requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/shell.py to shell.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/version.py to version.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/reference_name.py to reference_name.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/ensembl_versions.py to ensembl_versions.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/genome.py to genome.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/exon.py to exon.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/database.py to database.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/species.py to species.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/transcript.py to transcript.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/download_cache.py to download_cache.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/locus.py to locus.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/gene.py to gene.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/normalization.py to normalization.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/common.py to common.cpython-312.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl/search.py to search.cpython-312.pyc running install_egg_info running egg_info creating pyensembl.egg-info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt writing manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.12/dist-packages/pyensembl-2.3.13.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/bin I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running install_lib creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/shell.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/ensembl_release.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/version.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/reference_name.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/ensembl_versions.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/logging.conf -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/exon.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/database.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/species.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/transcript.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/download_cache.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__init__.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/locus.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/ensembl_url_templates.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/gene.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl creating /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/common.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/shell.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/locus.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/ensembl_url_templates.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/sequence_data.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/download_cache.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/transcript.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/search.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/reference_name.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/gene.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/locus_with_genome.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/exon.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/normalization.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/ensembl_versions.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/ensembl_release.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/genome.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/species.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/database.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/__pycache__/version.cpython-313.pyc -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__pycache__ copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/sequence_data.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/locus_with_genome.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/fasta.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/normalization.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/common.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/pyensembl/search.py -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl copying /build/reproducible-path/pyensembl-2.3.13/.pybuild/cpython3_3.13_pyensembl/build/requirements.txt -> /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/shell.py to shell.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/ensembl_release.py to ensembl_release.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/reference_name.py to reference_name.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/ensembl_versions.py to ensembl_versions.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/genome.py to genome.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/exon.py to exon.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/database.py to database.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/species.py to species.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/transcript.py to transcript.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/download_cache.py to download_cache.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/locus.py to locus.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/ensembl_url_templates.py to ensembl_url_templates.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/gene.py to gene.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/sequence_data.py to sequence_data.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/locus_with_genome.py to locus_with_genome.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/fasta.py to fasta.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/normalization.py to normalization.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/common.py to common.cpython-313.pyc byte-compiling /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl/search.py to search.cpython-313.pyc running install_egg_info running egg_info writing pyensembl.egg-info/PKG-INFO writing dependency_links to pyensembl.egg-info/dependency_links.txt writing entry points to pyensembl.egg-info/entry_points.txt writing requirements to pyensembl.egg-info/requires.txt writing top-level names to pyensembl.egg-info/top_level.txt reading manifest file 'pyensembl.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'pyensembl.egg-info/SOURCES.txt' Copying pyensembl.egg-info to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/lib/python3.13/dist-packages/pyensembl-2.3.13.egg-info Skipping SOURCES.txt running install_scripts Installing pyensembl script to /build/reproducible-path/pyensembl-2.3.13/debian/pyensembl/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pyensembl-2.3.13' dh_install find debian -name requirements.txt -delete make[1]: Leaving directory '/build/reproducible-path/pyensembl-2.3.13' dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/doc/pyensembl install -p -m0644 debian/copyright debian/pyensembl/usr/share/doc/pyensembl/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/doc/pyensembl install -p -m0644 debian/.debhelper/generated/pyensembl/dh_installchangelogs.dch.trimmed debian/pyensembl/usr/share/doc/pyensembl/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/usr/share/man/man1/ install -p -m0644 ./debian/pyensembl.1 debian/pyensembl/usr/share/man/man1/pyensembl.1 man-recode --to-code UTF-8 --suffix .dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 mv debian/pyensembl/usr/share/man/man1/pyensembl.1.dh-new debian/pyensembl/usr/share/man/man1/pyensembl.1 chmod 0644 -- debian/pyensembl/usr/share/man/man1/pyensembl.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.13) D: dh_python3 debhelper:174: source=pyensembl, binary packages=['pyensembl'] D: dh_python3 dh_python3:205: processing package pyensembl... D: dh_python3 fs:50: moving files from debian/pyensembl/usr/lib/python3.12/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/pyensembl/usr/lib/python3.13/dist-packages to debian/pyensembl/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package pyensembl details = {'requires.txt': {'debian/pyensembl/usr/lib/python3/dist-packages/pyensembl-2.3.13.egg-info/requires.txt'}, 'egg-info': {'debian/pyensembl/usr/lib/python3/dist-packages/pyensembl-2.3.13.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package pyensembl D: dh_python3 pydist:175: trying to find dependency for datacache<2.0.0,>=1.4.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for gtfparse<3.0.0,>=2.5.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for memoized-property>=1.0.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pylint<3.0.0,>=2.17.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for serializable<1.0.0,>=0.2.1 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for tinytimer<1.0.0,>=0.0.0 (python=None) D: dh_python3 pydist:291: invoking dpkg -S *python3/*/[Tt][Ii][Nn][Yy][Tt][Ii][Mm][Ee][Rr]-?*.*-info D: dh_python3 pydist:313: dpkg -S did not find package for tinytimer: dpkg-query: no path found matching pattern *python3/*/[Tt][Ii][Nn][Yy][Tt][Ii][Mm][Ee][Rr]-?*.*-info I: dh_python3 pydist:316: Cannot find package that provides tinytimer. Please add package that provides it to Build-Depends or add "tinytimer python3-tinytimer" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. D: dh_python3 pydist:175: trying to find dependency for typechecks<1.0.0,>=0.0.2 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3:any', 'pylint', 'python3-serializable', 'python3-memoized-property', 'python3-typechecks', 'python3-datacache', 'python3-gtfparse'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/pyensembl chmod a-x usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 gzip -9nf usr/share/doc/pyensembl/changelog.Debian usr/share/man/man1/pyensembl.1 cd '/build/reproducible-path/pyensembl-2.3.13' dh_fixperms -O--buildsystem=pybuild find debian/pyensembl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/pyensembl/usr/share/doc -type f -a -true -a ! -regex 'debian/pyensembl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/pyensembl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/pyensembl/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/pyensembl/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/postinst cat debian/pyensembl.postinst.debhelper >> debian/pyensembl/DEBIAN/postinst chmod 0755 -- debian/pyensembl/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/pyensembl/DEBIAN/prerm cat debian/pyensembl.prerm.debhelper >> debian/pyensembl/DEBIAN/prerm chmod 0755 -- debian/pyensembl/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN echo misc:Depends= >> debian/pyensembl.substvars echo misc:Pre-Depends= >> debian/pyensembl.substvars dpkg-gencontrol -ppyensembl -ldebian/changelog -Tdebian/pyensembl.substvars -cdebian/control -Pdebian/pyensembl chmod 0644 -- debian/pyensembl/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/pyensembl/DEBIAN cd debian/pyensembl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/pyensembl/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/pyensembl .. dpkg-deb: building package 'pyensembl' in '../pyensembl_2.3.13-2_all.deb'. dpkg-genbuildinfo --build=binary -O../pyensembl_2.3.13-2_i386.buildinfo dpkg-genchanges --build=binary -O../pyensembl_2.3.13-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from pyensembl-2.3.13/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3833 and its subdirectories I: Current time: Tue Mar 24 05:36:31 -12 2026 I: pbuilder-time-stamp: 1774373791