I: pbuilder: network access will be disabled during build
I: Current time: Fri Feb 21 02:34:01 +14 2025
I: pbuilder-time-stamp: 1740054841
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [python-csb_1.2.5+dfsg-10.dsc]
I: copying [./python-csb_1.2.5+dfsg.orig.tar.gz]
I: copying [./python-csb_1.2.5+dfsg-10.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./python-csb_1.2.5+dfsg-10.dsc: unsupported subcommand
dpkg-source: info: extracting python-csb in python-csb-1.2.5+dfsg
dpkg-source: info: unpacking python-csb_1.2.5+dfsg.orig.tar.gz
dpkg-source: info: unpacking python-csb_1.2.5+dfsg-10.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying exclude_online_tests.patch
dpkg-source: info: applying reproducible.patch
dpkg-source: info: applying fix_setup.patch
dpkg-source: info: applying avoid-multiple-namespace.patch
dpkg-source: info: applying python3-syntax.patch
dpkg-source: info: applying python-3.12.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/D01_modify_environment starting
debug: Running on ionos2-i386.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Feb 20 12:34 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/D02_print_environment starting
I: set
  BASH=/bin/sh
  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
  BASH_ALIASES=()
  BASH_ARGC=()
  BASH_ARGV=()
  BASH_CMDS=()
  BASH_LINENO=([0]="12" [1]="0")
  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu")
  BASH_VERSION='5.2.37(1)-release'
  BUILDDIR=/build/reproducible-path
  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
  BUILDUSERNAME=pbuilder2
  BUILD_ARCH=i386
  DEBIAN_FRONTEND=noninteractive
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=10 '
  DIRSTACK=()
  DISTRIBUTION=trixie
  EUID=0
  FUNCNAME=([0]="Echo" [1]="main")
  GROUPS=()
  HOME=/root
  HOSTNAME=i-capture-the-hostname
  HOSTTYPE=i686
  HOST_ARCH=i386
  IFS=' 	
  '
  INVOCATION_ID=f28f6f010d3b4e1480b127fe1b0b14bf
  LANG=C
  LANGUAGE=de_CH:de
  LC_ALL=C
  LD_LIBRARY_PATH=/usr/lib/libeatmydata
  LD_PRELOAD=libeatmydata.so
  MACHTYPE=i686-pc-linux-gnu
  MAIL=/var/mail/root
  OPTERR=1
  OPTIND=1
  OSTYPE=linux-gnu
  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
  PBCURRENTCOMMANDLINEOPERATION=build
  PBUILDER_OPERATION=build
  PBUILDER_PKGDATADIR=/usr/share/pbuilder
  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
  PBUILDER_SYSCONFDIR=/etc
  PIPESTATUS=([0]="0")
  POSIXLY_CORRECT=y
  PPID=40014
  PS4='+ '
  PWD=/
  SHELL=/bin/bash
  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
  SHLVL=3
  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NHla3jjL/pbuilderrc_hmcn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NHla3jjL/b2 --logfile b2/build.log python-csb_1.2.5+dfsg-10.dsc'
  SUDO_GID=112
  SUDO_UID=107
  SUDO_USER=jenkins
  TERM=unknown
  TZ=/usr/share/zoneinfo/Etc/GMT-14
  UID=0
  USER=root
  _='I: set'
  http_proxy=http://46.16.76.132:3128
I: uname -a
  Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), dh-python, python3-all, python3-numpy, python3-scipy, python3-matplotlib, python3-setuptools
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19795 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all; however:
  Package python3-all is not installed.
 pbuilder-satisfydepends-dummy depends on python3-numpy; however:
  Package python3-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-scipy; however:
  Package python3-scipy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-matplotlib; however:
  Package python3-matplotlib is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgcrypt20{a} libgfortran5{a} libglib2.0-0t64{a} libgpg-error0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} libsharpyuv0{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libunistring5{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-contourpy{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-platformdirs{a} python3-pyparsing{a} python3-pytz{a} python3-scipy{a} python3-setuptools{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} python3.12-tk{a} python3.13{a} python3.13-minimal{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} 
The following packages are RECOMMENDED but will NOT be installed:
  ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libgpg-error-l10n libltdl-dev libmail-sendmail-perl lynx python3-bs4 python3-cssselect python3-html5lib python3-olefile python3-pooch shared-mime-info wget xdg-user-dirs 
0 packages upgraded, 148 newly installed, 0 to remove and 0 not upgraded.
Need to get 104 MB of archives. After unpacking 470 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 libpython3.13-minimal i386 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 python3.13-minimal i386 3.13.2-1 [2266 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 python3-minimal i386 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 tzdata all 2024b-6 [257 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libreadline8t64 i386 8.2-6 [173 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 libpython3.13-stdlib i386 3.13.2-1 [1985 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 python3.13 i386 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 libpython3-stdlib i386 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian trixie/main i386 python3 i386 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 libpython3.12-minimal i386 3.12.9-1 [816 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 python3.12-minimal i386 3.12.9-1 [2238 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-3 [96.2 kB]
Get: 25 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 libtcl8.6 i386 8.6.16+dfsg-1 [1103 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 libpng16-16t64 i386 1.6.46-4 [292 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libfreetype6 i386 2.13.3+dfsg-1 [464 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-mono all 2.37-8 [489 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 fonts-dejavu-core all 2.37-8 [840 kB]
Get: 38 http://deb.debian.org/debian trixie/main i386 fontconfig-config i386 2.15.0-2 [317 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 libfontconfig1 i386 2.15.0-2 [402 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libx11-data all 2:1.8.10-2 [337 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 libx11-6 i386 2:1.8.10-2 [834 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 libxrender1 i386 1:0.9.10-1.1+b4 [28.8 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libxft2 i386 2.3.6-1+b4 [55.3 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 x11-common all 1:7.7+24 [217 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libxss1 i386 1:1.2.3-1+b3 [17.3 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libtk8.6 i386 8.6.16-1 [834 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-7 [616 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 blt i386 2.5.3+dfsg-7 [6024 B]
Get: 53 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 59 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 74 http://deb.debian.org/debian trixie/main i386 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 python3-setuptools all 75.6.0-1 [720 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 dh-python all 6.20250108 [113 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 fonts-lyx all 2.4.3-1 [190 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 libblas3 i386 3.12.1-2 [150 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libfribidi0 i386 1.0.16-1 [27.0 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libgpg-error0 i386 1.51-3 [87.3 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libgcrypt20 i386 1.11.0-7 [799 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 libgfortran5 i386 14.2.0-16 [735 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libglib2.0-0t64 i386 2.83.3-2 [1581 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libgraphite2-3 i386 1.3.14-2+b1 [77.8 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 93 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-4 [354 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libharfbuzz0b i386 10.2.0-1 [504 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 libimagequant0 i386 2.18.0-1+b2 [36.0 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libjbig0 i386 2.1-6.1+b2 [32.2 kB]
Get: 98 http://deb.debian.org/debian trixie/main i386 libjpeg62-turbo i386 1:2.1.5-3+b1 [171 kB]
Get: 99 http://deb.debian.org/debian trixie/main i386 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 100 http://deb.debian.org/debian trixie/main i386 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 101 http://deb.debian.org/debian trixie/main i386 liblapack3 i386 3.12.1-2 [2198 kB]
Get: 102 http://deb.debian.org/debian trixie/main i386 liblbfgsb0 i386 3.0+dfsg.4-1+b2 [29.5 kB]
Get: 103 http://deb.debian.org/debian trixie/main i386 liblcms2-2 i386 2.16-2 [171 kB]
Get: 104 http://deb.debian.org/debian trixie/main i386 liblerc4 i386 4.0.0+ds-5 [191 kB]
Get: 105 http://deb.debian.org/debian trixie/main i386 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 106 http://deb.debian.org/debian trixie/main i386 libtirpc3t64 i386 1.3.4+ds-1.3+b1 [90.5 kB]
Get: 107 http://deb.debian.org/debian trixie/main i386 libnsl2 i386 1.3.0-3+b3 [42.7 kB]
Get: 108 http://deb.debian.org/debian trixie/main i386 libopenjp2-7 i386 2.5.3-1 [215 kB]
Get: 109 http://deb.debian.org/debian trixie/main i386 libpython3.12-stdlib i386 3.12.9-1 [1972 kB]
Get: 110 http://deb.debian.org/debian trixie/main i386 libqhull-r8.0 i386 2020.2-6+b2 [259 kB]
Get: 111 http://deb.debian.org/debian trixie/main i386 libraqm0 i386 0.10.2-1 [14.6 kB]
Get: 112 http://deb.debian.org/debian trixie/main i386 libsharpyuv0 i386 1.5.0-0.1 [115 kB]
Get: 113 http://deb.debian.org/debian trixie/main i386 libwebp7 i386 1.5.0-0.1 [329 kB]
Get: 114 http://deb.debian.org/debian trixie/main i386 libtiff6 i386 4.5.1+git230720-5 [339 kB]
Get: 115 http://deb.debian.org/debian trixie/main i386 libwebpdemux2 i386 1.5.0-0.1 [114 kB]
Get: 116 http://deb.debian.org/debian trixie/main i386 libwebpmux3 i386 1.5.0-0.1 [127 kB]
Get: 117 http://deb.debian.org/debian trixie/main i386 libxslt1.1 i386 1.1.35-1.1+b1 [243 kB]
Get: 118 http://deb.debian.org/debian trixie/main i386 python-matplotlib-data all 3.8.3-3 [2731 kB]
Get: 119 http://deb.debian.org/debian trixie/main i386 python3.12 i386 3.12.9-1 [681 kB]
Get: 120 http://deb.debian.org/debian trixie/main i386 python3-all i386 3.13.1-2 [1052 B]
Get: 121 http://deb.debian.org/debian trixie/main i386 python3-attr all 25.1.0-1 [68.7 kB]
Get: 122 http://deb.debian.org/debian trixie/main i386 python3-brotli i386 1.1.0-2+b6 [319 kB]
Get: 123 http://deb.debian.org/debian trixie/main i386 python3-numpy i386 1:1.26.4+ds-13 [4751 kB]
Get: 124 http://deb.debian.org/debian trixie/main i386 python3-contourpy i386 1.3.1-1 [271 kB]
Get: 125 http://deb.debian.org/debian trixie/main i386 python3-cycler all 0.12.1-1 [9496 B]
Get: 126 http://deb.debian.org/debian trixie/main i386 python3-dateutil all 2.9.0-3 [79.3 kB]
Get: 127 http://deb.debian.org/debian trixie/main i386 python3-decorator all 5.1.1-5 [15.1 kB]
Get: 128 http://deb.debian.org/debian trixie/main i386 python3-pytz all 2025.1-3 [150 kB]
Get: 129 http://deb.debian.org/debian trixie/main i386 python3-tz all 2025.1-3 [4004 B]
Get: 130 http://deb.debian.org/debian trixie/main i386 python3-platformdirs all 4.3.6-1 [16.6 kB]
Get: 131 http://deb.debian.org/debian trixie/main i386 python3-fs all 2.4.16-6 [95.1 kB]
Get: 132 http://deb.debian.org/debian trixie/main i386 python3-lxml i386 5.3.1-1 [1587 kB]
Get: 133 http://deb.debian.org/debian trixie/main i386 python3-lz4 i386 4.4.0+dfsg-1 [25.5 kB]
Get: 134 http://deb.debian.org/debian trixie/main i386 python3-scipy i386 1.14.1-4 [20.1 MB]
Get: 135 http://deb.debian.org/debian trixie/main i386 python3-mpmath all 1.3.0-1 [419 kB]
Get: 136 http://deb.debian.org/debian trixie/main i386 python3-sympy all 1.13.3-1 [4147 kB]
Get: 137 http://deb.debian.org/debian trixie/main i386 python3-ufolib2 all 0.17.0+dfsg1-1 [33.0 kB]
Get: 138 http://deb.debian.org/debian trixie/main i386 unicode-data all 15.1.0-1 [8547 kB]
Get: 139 http://deb.debian.org/debian trixie/main i386 python3-fonttools i386 4.55.3-2 [1591 kB]
Get: 140 http://deb.debian.org/debian trixie/main i386 python3-kiwisolver i386 1.4.7-3 [83.3 kB]
Get: 141 http://deb.debian.org/debian trixie/main i386 python3-pil i386 11.1.0-5 [535 kB]
Get: 142 http://deb.debian.org/debian trixie/main i386 python3.12-tk i386 3.12.9-1 [114 kB]
Get: 143 http://deb.debian.org/debian trixie/main i386 python3.13-tk i386 3.13.2-1 [104 kB]
Get: 144 http://deb.debian.org/debian trixie/main i386 python3-tk i386 3.13.1-1 [9464 B]
Get: 145 http://deb.debian.org/debian trixie/main i386 python3-pil.imagetk i386 11.1.0-5 [81.8 kB]
Get: 146 http://deb.debian.org/debian trixie/main i386 python3-pyparsing all 3.1.2-1 [146 kB]
Get: 147 http://deb.debian.org/debian trixie/main i386 python3-packaging all 24.2-1 [55.3 kB]
Get: 148 http://deb.debian.org/debian trixie/main i386 python3-matplotlib i386 3.8.3-3+b3 [5658 kB]
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invoke-rc.d: could not determine current runlevel
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Current default time zone: 'Etc/UTC'
Local time is now:      Thu Feb 20 12:34:36 UTC 2025.
Universal Time is now:  Thu Feb 20 12:34:36 UTC 2025.
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-tk:i386 (3.13.1-1) ...
Setting up debhelper (13.24.1) ...
Setting up python3-pytz (2025.1-3) ...
Setting up python3-tz (2025.1-3) ...
Setting up python3-fs (2.4.16-6) ...
Setting up python3-pil:i386 (11.1.0-5) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-pil.imagetk:i386 (11.1.0-5) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up dh-python (6.20250108) ...
Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
Setting up python3-fonttools (4.55.3-2) ...
Setting up python3-matplotlib (3.8.3-3+b3) ...
Processing triggers for libc-bin (2.40-6) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
I: Building the package
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for trixie
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/python-csb-1.2.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../python-csb_1.2.5+dfsg-10_source.changes
dpkg-buildpackage: info: source package python-csb
dpkg-buildpackage: info: source version 1.2.5+dfsg-10
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Nilesh Patra <nilesh@debian.org>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running clean
removing '/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build' (and everything under it)
'build/bdist.linux-i686' does not exist -- can't clean it
'build/scripts-3.12' does not exist -- can't clean it
I: pybuild base:311: python3.13 setup.py clean 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running clean
removing '/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build' (and everything under it)
'build/bdist.linux-i686' does not exist -- can't clean it
'build/scripts-3.13' does not exist -- can't clean it
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --with python3 --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:311: python3.12 setup.py config 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running config
I: pybuild base:311: python3.13 setup.py config 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running config
   dh_auto_build -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py build 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running build
running build_py
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb
copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb
copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric
copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric
copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test
copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test
copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio
copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core
copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech
copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech
copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech
copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io
copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io
copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io
copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases
copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric
copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric
copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio
copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core
copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io
copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils
copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments
copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm
copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure
copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence
copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io
copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr
copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment
copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans
copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck
copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc
copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred
copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs
copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb
copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif
copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe
copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta
copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers
copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf
copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf
copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils
copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments
copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments
copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm
copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm
copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure
copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence
copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence
copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr
copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers
copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf
copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf
copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc
running egg_info
creating csb.egg-info
writing csb.egg-info/PKG-INFO
writing dependency_links to csb.egg-info/dependency_links.txt
writing entry points to csb.egg-info/entry_points.txt
writing requirements to csb.egg-info/requires.txt
writing top-level names to csb.egg-info/top_level.txt
writing manifest file 'csb.egg-info/SOURCES.txt'
reading manifest file 'csb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.*' under directory 'docs'
warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data'
adding license file 'LICENSE.rst'
writing manifest file 'csb.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.bio.nmr.resources' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.bio.nmr.resources' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.bio.nmr.resources' to be distributed and are
        already explicitly excluding 'csb.bio.nmr.resources' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.test.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.test.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.test.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.test.data' to be distributed and are
        already explicitly excluding 'csb.test.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
copying csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources
I: pybuild base:311: /usr/bin/python3 setup.py build 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running build
running build_py
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb
copying csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb
copying csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric
copying csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric
copying csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test
copying csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test
copying csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio
copying csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
copying csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
copying csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
copying csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
copying csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
copying csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
copying csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
copying csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core
copying csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech
copying csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech
copying csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech
copying csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io
copying csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io
copying csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io
copying csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases
copying csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric
copying csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric
copying csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio
copying csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
copying csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core
copying csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech
copying csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io
copying csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils
copying csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments
copying csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm
copying csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure
copying csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence
copying csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io
copying csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr
copying csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment
copying csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans
copying csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck
copying csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc
copying csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred
copying csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs
copying csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb
copying csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif
copying csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe
copying csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta
copying csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers
copying csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf
copying csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf
copying csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils
copying csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments
copying csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments
copying csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm
copying csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm
copying csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure
copying csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence
copying csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence
copying csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
copying csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr
copying csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers
copying csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf
copying csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf
copying csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc
copying csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc
running egg_info
writing csb.egg-info/PKG-INFO
writing dependency_links to csb.egg-info/dependency_links.txt
writing entry points to csb.egg-info/entry_points.txt
writing requirements to csb.egg-info/requires.txt
writing top-level names to csb.egg-info/top_level.txt
reading manifest file 'csb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.*' under directory 'docs'
warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data'
adding license file 'LICENSE.rst'
writing manifest file 'csb.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.bio.nmr.resources' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.bio.nmr.resources' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.bio.nmr.resources' to be distributed and are
        already explicitly excluding 'csb.bio.nmr.resources' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.test.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.test.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.test.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.test.data' to be distributed and are
        already explicitly excluding 'csb.test.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
copying csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data
creating /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources
copying csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/python-csb-1.2.5+dfsg'
LC_ALL=C.UTF-8 dh_auto_test -- --test --system=custom \
	--test-args='set -e; \
                             cd {build_dir}; \
                             PYTHONPATH={build_dir} PYTHONWARNINGS=d {interpreter} csb/test/app.py --generated-resources /tmp --verbosity 2'
I: pybuild base:311: set -e; \
                             cd /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build; \
                             PYTHONPATH=/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build PYTHONWARNINGS=d python3.12 csb/test/app.py --generated-resources /tmp --verbosity 2
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d'
  m = re.search('(\d+)\D+(\d+)', line).groups()
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s'
  seq = re.sub('\s+', '', ''.join(lines[1:]))
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-'
  pattern = re.compile('^[A-Z\-]\s[0-9]+\s+')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s'
  string = ''.join(re.split('\s+', string))
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s'
  conf_string = ''.join(re.split('\s+', conf_string))
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w'
  self._residues += re.sub('([^\w\-\.])+', '', string)
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d'
  res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line)
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:355: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.full.pickle'>
  Pickle.dump(ensemble, open(os.path.join(self.generatedData, '1nz9.full.pickle'), 'wb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:361: ResourceWarning: unclosed file <_io.BufferedWriter name='/tmp/1nz9.model1.pickle'>
  Pickle.dump(model1, open(os.path.join(self.generatedData, '1nz9.model1.pickle'), 'wb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
<frozen importlib._bootstrap>:530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s'
  """
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s'
  input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d'
  residues = re.compile('(\d+)\s*residues\s\|')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s'
  ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' +
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s'
  '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' +
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s'
  '%\s*gener\s*(\d+\.\d+)%\s*disall')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s'
  labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s'
  labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s'
  bad_contacts = re.compile('Bad\scontacts:\s*(\d+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s'
  g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' +
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s'
  '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)')
<frozen importlib._bootstrap>:530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s'
  re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s'
  re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s'
  re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s'
  re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S'
  re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w'
  "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"]
testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok
testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok
testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok
testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok
testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok
testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok
testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific'
testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific'
testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles)
r526 ... ok
testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok
testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok
testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok
testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok
testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok
testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok
testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok
testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok
testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok
testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok
testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok
testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok
testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok
testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok
testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose)
@see: [CSB 0000058] ... ok
testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok
testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok
testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok
testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok
testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok
testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok
testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok
testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok
testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok
testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok
testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok
testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok
testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok
testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok
testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok
testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok
testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok
testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok
testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok
testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'>
  return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok
testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok
testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok
testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok
testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok
testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok
testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok
testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok
testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok
testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok
testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok
testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok
testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok
testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok
testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok
testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok
testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok
testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok
testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok
testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok
testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok
testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprn8m8qan' mode='r' encoding='UTF-8'>
  new = open(tmp.name).read().rstrip()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok
testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'>
  for line in open(file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok
testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok
testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok
testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok
testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok
testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok
testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok
testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok
testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok
testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok
testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok
testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok
testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok
testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok
testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok
testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok
testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok
testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok
testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok
testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok
testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok
testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok
testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok
testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok
testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok
testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok
testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok
testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok
testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok
testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok
testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok
testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok
testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok
testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok
testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok
testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok
testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok
testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok
testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok
testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok
testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok
testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok
testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok
testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok
testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok
testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok
testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok
testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok
testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok
testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok
testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok
testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom)
@see: [CSB 0000122] ... ok
testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation)
@see: [CSB 0000030] ... ok
testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone)
@see: [CSB 0000029] ... ok
testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates)
Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines'
testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'>
  return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok
testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok
testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue)
@todo: more checks are needed here (e.g. append an atom to different residues) ... ok
testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber)
@bug: check for overlapping SNs in a Chain ... ok
testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok
testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok
testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok
testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok
testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok
testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok
testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok
testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok
testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok
testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok
testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok
testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok
testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok
testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok
testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue)
@todo: more checks are needed here (e.g. append an atom to different residues) ... ok
testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber)
@bug: check for overlapping SNs in a Chain ... ok
testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok
testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok
testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok
testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok
testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok
testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok
testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok
testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok
testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok
testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok
testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok
testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok
testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok
testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok
testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpacn7uq15' mode='r' encoding='UTF-8'>
  self.assertEqual(pdbraw, open(tmp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpcskl_wj_' mode='r' encoding='UTF-8'>
  self.assertEqual(pdbraw, open(tmp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok
testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok
testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'>
  self.a3m = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'>
  ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'>
  ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok
testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok
testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok
testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok
testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok
testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok
testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok
testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok
testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpghasoy3x' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp_lx5fntl' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok
testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok
testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9bcmoao6' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjc99ndcl' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok
testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok
testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp4xxlt0wy' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpju1heigz' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok
testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok
testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok
testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok
testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok
testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok
testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok
testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok
testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok
testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp070y_nm4' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpysbyksr2' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok
testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok
testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok
testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok
testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok
testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok
testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok
testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok
testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok
testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok
testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok
testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok
testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok
testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok
testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok
testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok
testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit)
Test creating an empty L{Clans} instance. ... ok
testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok
testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok
testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok
testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok
testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok
testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok
testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok
testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'>
  self._clans_instance.filename)).read().split('\n', 1)[1]
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok
testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok
testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok
testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile)
Test parsing of a small dummy file with known values ... ok
testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter)
Test whether the premature (before parsing) access to clans_instance is ... ok
testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok
testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok
testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok
testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok
testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok
testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
  array = numpy.fromstring(map_data, numpy.float32, count)
ok
testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok
testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok
testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok
testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok
testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'>
  content = open(filename).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok
testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist)
@see: [CSB 0000056] ... ok
testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'>
  for line in open(structure_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe0chxej2' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok
testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok
testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M)
@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp00npopbs' mode='r' encoding='UTF-8'>
  generated = open(tmp.name).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok
testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok
testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok
testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok
testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok
testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok
testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting)
@see: [CSB 0000067] ... ok
testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping)
Strictly speaking, this is a regression test. But it so essential that ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok
testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok
testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping)
Strictly speaking, this is a regression test. But it so essential that ... ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok
testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok
testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok
testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok
testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok
testParseBiomolecule (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok
testParseHetMolecules (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok
testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok
testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok
testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok
testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok
testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping)
@see: [CSB 0000031] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping)
@see: [CSB 0000052] ... ok
testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok
testFastMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok
testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok
testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok
testMapper (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok
testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok
testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok
testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok
testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok
testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok
testRobustMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok
testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSecStructureParsing (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing)
@see: [CSB 0000045] ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'>
  for line in open(structure_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok
testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok
testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbqjc6kch' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgn70z76c' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfbssr9jh' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeyw5uvk5' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7_8eywj4' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpzeu1z_n0' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok
testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok
testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok
testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok
testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok
testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok
testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok
testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpsky8r7jk' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp9bper_0d' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok
testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok
testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'>
  self.data = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok
testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok
testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok
testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok
testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok
testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok
testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok
testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok
testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok
testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok
testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok
testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok
testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok
testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok
testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok
testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok
testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok
testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok
testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok
testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok
testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok
testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok
testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok
testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok
testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok
testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok
testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok
testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok
testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok
testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok
testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok
testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok
testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok
testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok
testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok
testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok
testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok
testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok
testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok
testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok
testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok
testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok
testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok
testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok
testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok
testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok
testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok
testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble)
The posterior of a gaussian scale mixture with gamma prior ... ok
testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma)
The posterior of a gaussian scale mixture with gamma prior ... ok
testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP)
The posterior of a gaussian scale mixture with gamma prior ... ok
testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma)
The posterior of a gaussian scale mixture with gamma prior ... ok
testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP)
The posterior of a gaussian scale mixture with gamma prior ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok
testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow'
testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok
testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok
testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok
testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok
testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok
testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok
testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok
testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok
testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok
testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok
testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok
testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok
testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok
testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok
testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok
testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok
testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok
testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok
testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok
testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok
testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok
testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok
testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok
testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok
testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite.
  initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)),
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite.
  momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d),
ok
testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok
testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok
testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.'
testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok
testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok
testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok
testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.'
testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok
testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok
testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok
testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok
testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok
testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok
testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok
testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok
testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok
testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok
testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok
testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok
testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR
testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR
testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR
testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok
testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok
testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok
testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok
testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok
testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok
testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok
testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok
testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok
testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok
testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok
testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok
testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation)
@see: [CSB 0000132] ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok
testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok
testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok
testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok
testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok
testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok
testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok
testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok
testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok
testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok
testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok
testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok
testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok
testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok
testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok
testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok
testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok
testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok
testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok
testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok
testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok
testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok
testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok
testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwa9g1omi' mode='r' encoding='UTF-8'>
  content = open(self.temp.name).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok
testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok
testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok
testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok
testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL
testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok
testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok
testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok
testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok
testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok
testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp7u9c0_yx' mode='r' encoding='UTF-8'>
  self.assertEqual(open(temp.name).read(), 'D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyfzcfkbm' mode='r' encoding='UTF-8'>
  self.assertEqual(open(temp.name).read(), 'A/B/C/')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwlsaok6r' mode='r' encoding='UTF-8'>
  self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok
testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok
testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok
testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok
testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok
testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok
testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok
testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'>
  self.assertEqual(open(self.tsv).read(), open(dump.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpeabj87bb' mode='r' encoding='UTF-8'>
  self.assertEqual(open(self.tsv).read(), open(dump.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok
testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok
testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok
testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok
testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok
testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok
testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok
testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok
testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok
testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok
testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpmw7imrcm' mode='r' encoding='UTF-8'>
  self.assertEqual(data, open(temp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok
testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok

======================================================================
ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 899, in testFiveReplicas
    assert(self._assertIdenticalProjTrajs(samples, swap_interval))
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (85,) (75,) 

======================================================================
ERROR: testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 909, in testFiveReplicasOffset
    assert(self._assertIdenticalProjTrajs(samples, swap_interval, first_swap))
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (103,) (73,) 

======================================================================
ERROR: testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 889, in testFourReplicas
    assert(self._assertIdenticalProjTrajs(samples, swap_interval))
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (125,) (105,) 

======================================================================
ERROR: testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 879, in testTwoReplicas
    assert(self._assertIdenticalProjTrajs(samples, swap_interval))
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (195,) (305,) 

======================================================================
ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestDeepCopy.runTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest
    self.assertNotEquals(id(obj), id(copy))
    ^^^^^^^^^^^^^^^^^^^^
AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'?

======================================================================
FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/core.TestEnum.testComparison)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison
    self.assertFalse(self.enum.C == 66)
AssertionError: True is not false

======================================================================
FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-12_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit
    with self.assertRaises(RuntimeError):
         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AssertionError: RuntimeError not raised

----------------------------------------------------------------------
Ran 697 tests in 126.472s

FAILED (failures=2, errors=5, skipped=6)
I: pybuild base:311: set -e; \
                             cd /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build; \
                             PYTHONPATH=/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build PYTHONWARNINGS=d python3.13 csb/test/app.py --generated-resources /tmp --verbosity 2
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s'
  string = ''.join(re.split('\s+', string))
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s'
  conf_string = ''.join(re.split('\s+', conf_string))
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w'
  self._residues += re.sub('([^\w\-\.])+', '', string)
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'>
  return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
<frozen importlib._bootstrap>:530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s'
  """
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d'
  m = re.search('(\d+)\D+(\d+)', line).groups()
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s'
  seq = re.sub('\s+', '', ''.join(lines[1:]))
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-'
  pattern = re.compile('^[A-Z\-]\s[0-9]+\s+')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d'
  res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line)
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s'
  input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d'
  residues = re.compile('(\d+)\s*residues\s\|')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s'
  ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' +
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s'
  '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' +
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s'
  '%\s*gener\s*(\d+\.\d+)%\s*disall')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s'
  labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s'
  labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s'
  bad_contacts = re.compile('Bad\scontacts:\s*(\d+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s'
  g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' +
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s'
  '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)')
<frozen importlib._bootstrap>:530: DeprecationWarning: the load_module() method is deprecated and slated for removal in Python 3.12; use exec_module() instead
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s'
  re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s'
  re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s'
  re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s'
  re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S'
  re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)')
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w'
  "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"]
testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testLeapFrog) ... ok
testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.ReferenceRegressions.testVelocityVerlet) ... ok
testFastLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testFastLeapFrog) ... ok
testLeapFrog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testLeapFrog) ... ok
testVelocityVerlet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric/integrators.TestIntegrators.testVelocityVerlet) ... ok
testCaching (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testCaching) ... ok
testDiagonalTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testDiagonalTweak) ... skipped 'machine-specific'
testUnityMultipleTweak (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.InvertibleMatrixTest.testUnityMultipleTweak) ... skipped 'machine-specific'
testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.MathRegressions.testDihedralAngles)
r526 ... ok
testDegree2Radian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDegree2Radian) ... ok
testDihedralAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testDihedralAngles) ... ok
testExp (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testExp) ... ok
testFromPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testFromPolar) ... ok
testLog (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testLog) ... ok
testPolar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testPolar) ... ok
testRadian2Degree (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRadian2Degree) ... ok
testRotationMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestMath.testRotationMatrix) ... ok
testLogTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal) ... ok
testLogTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testLogTrapezoidal2D) ... ok
testSimpson2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testSimpson2D) ... ok
testTrapezoidal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal) ... ok
testTrapezoidal2D (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/numeric.TestNumeric.testTrapezoidal2D) ... ok
testRmsdMirrorImage (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testRmsdMirrorImage) ... ok
testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.Regressions.testTMSuperimpose)
@see: [CSB 0000058] ... ok
testCenterOfMass (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testCenterOfMass) ... ok
testDeg (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDeg) ... ok
testDistance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistance) ... ok
testDistanceMatrix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testDistanceMatrix) ... ok
testFindPairs (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFindPairs) ... ok
testFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFit) ... ok
testFitWellordered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testFitWellordered) ... ok
testInertiaTensor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testInertiaTensor) ... ok
testRad (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRad) ... ok
testRadiusOfGyration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRadiusOfGyration) ... ok
testRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsd) ... ok
testRmsdCur (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testRmsdCur) ... ok
testScaleAndFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testScaleAndFit) ... ok
testSecondMoments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testSecondMoments) ... ok
testTmScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmScore) ... ok
testTmSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTmSuperimpose) ... ok
testTorsionRmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testTorsionRmsd) ... ok
testWFit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWFit) ... ok
testWrmsd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/utils.TestUtils.testWrmsd) ... ok
testAnchoredAround (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testAnchoredAround) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.model1.pickle'>
  return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBackbone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackbone) ... ok
testBackboneAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testBackboneAt) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testEnd) ... ok
testOverlap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testOverlap) ... ok
testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQEnd) ... ok
testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testQStart) ... ok
testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSD) ... ok
testRMSDTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testRMSDTo) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSequence) ... ok
testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testSourceID) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testStart) ... ok
testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsion) ... ok
testTorsionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestAssignment.testTorsionAt) ... ok
testCount (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testCount) ... ok
testMean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testMean) ... ok
testShrink (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrink) ... ok
testShrinkOne (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestFragmentCluster.testShrinkOne) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testAccession) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testEnd) ... ok
testFomObject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testFomObject) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testLength) ... ok
testQEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQEnd) ... ok
testQStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testQStart) ... ok
testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testResidues) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testScore) ... ok
testSourceID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSourceID) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testStart) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testSubregion) ... ok
testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragment.testTorsion) ... ok
testAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testAt) ... ok
testComplement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testComplement) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py:562: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpe9zfy76e' mode='r' encoding='UTF-8'>
  new = open(tmp.name).read().rstrip()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testFromSource (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testFromSource) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testIndexer) ... ok
testMarkUnconfident (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testMarkUnconfident) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py:457: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags' mode='r' encoding='UTF-8'>
  for line in open(file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSize) ... ok
testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSort) ... ok
testSources (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testSources) ... ok
testStartingAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragmentMap.testStartingAt) ... ok
testMakeChopped (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeChopped) ... ok
testMakeCombined (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeCombined) ... ok
testMakeFiltered (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFiltered) ... ok
testMakeFragset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMakeFragset) ... ok
testMix (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestRosettaFragsetfactory.testMix) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAccession) ... ok
testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testAssign) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testEntryID) ... ok
testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFilter) ... ok
testFromProfile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromProfile) ... ok
testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testFromSequence) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testLength) ... ok
testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testMatches) ... ok
testResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testResidues) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTarget.testSequence) ... ok
testAssign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssign) ... ok
testAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testAssignments) ... ok
testClosest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testClosest) ... ok
testFilter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testFilter) ... ok
testLongest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testLongest) ... ok
testNative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testNative) ... ok
testPrecision (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testPrecision) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTargetResidue.testType) ... ok
testCompute (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testCompute) ... ok
testComputeSingle (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testComputeSingle) ... ok
testFlatTorsionMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testFlatTorsionMap) ... ok
testGetAngles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testGetAngles) ... ok
testTarget (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testTarget) ... ok
testThreshold (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/fragments.TestTorsionAnglePredictor.testThreshold) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testAppend) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testIndexer) ... ok
testNeff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testNeff) ... ok
testRank (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testRank) ... ok
testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHMMLayer.testResidue) ... ok
testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testAlignment) ... ok
testEquals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testEquals) ... ok
testIncludes (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testIncludes) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testLength) ... ok
testSurpasses (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHit.testSurpasses) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testLength) ... ok
testSort (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestHitList.testSort) ... ok
testAllLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testAllLayers) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testChain) ... ok
testConvertScores (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testConvertScores) ... ok
testEmissionSimilarity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEmissionSimilarity) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testEnd) ... ok
testID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testID) ... ok
testLayers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testLayers) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testName) ... ok
testScoreUnits (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testScoreUnits) ... ok
testSegment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSegment) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStart) ... ok
testStartInsertion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStartInsertion) ... ok
testStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testStructure) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testSubregion) ... ok
testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMM.testToHMM) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testConstructor) ... ok
testToHMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestProfileHMMSegment.testToHMM) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestPseudocountBuilder.runTest) ... ok
testBackground (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testBackground) ... ok
testEmission (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testEmission) ... ok
testSilent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testSilent) ... ok
testTransitions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testTransitions) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/hmm.TestState.testType) ... ok
testAppendAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testAppendAtom)
@see: [CSB 0000122] ... ok
testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testApplyTransformation)
@see: [CSB 0000030] ... ok
testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testClone)
@see: [CSB 0000029] ... ok
testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.ChainRegressions.testListCoordinates)
Performance tweaks in AbstractEntity.get_coordinates() ... skipped 'may fail on slower machines'
testApplyTransformation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testApplyTransformation) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py:297: ResourceWarning: unclosed file <_io.BufferedReader name='/tmp/1nz9.full.pickle'>
  return csb.io.Pickle.load(open(file, 'rb'))
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testComponents) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testItems) ... ok
testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAbstractEntity.testListCoordinates) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testElement) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testName) ... ok
testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testResidue)
@todo: more checks are needed here (e.g. append an atom to different residues) ... ok
testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSerialNumber)
@bug: check for overlapping SNs in a Chain ... ok
testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testSorting) ... ok
testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestAtom.testVector) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAccession) ... ok
testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlign) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAlphabet) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testAppend) ... ok
testClone (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testClone) ... ok
testComputeTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testComputeTorsion) ... ok
testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testContains) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testEntryID) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFind) ... ok
testFromSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testFromSequence) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testGetitem) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testId) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testLength) ... ok
testListCoordinates (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testListCoordinates) ... ok
testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testRMSD) ... ok
testSecStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSecStructure) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSequence) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSubregion) ... ok
testSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testSuperimpose) ... ok
testTMScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMScore) ... ok
testTMSuperimpose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testTMSuperimpose) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestChain.testType) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testAppend) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testElement) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testFind) ... ok
testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testIteration) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testLength) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testName) ... ok
testResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testResidue)
@todo: more checks are needed here (e.g. append an atom to different residues) ... ok
testSerialNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSerialNumber)
@bug: check for overlapping SNs in a Chain ... ok
testSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testSorting) ... ok
testVector (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestDisorderedAtom.testVector) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testAppend) ... ok
testComponents (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testComponents) ... ok
testFirstModel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testFirstModel) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testGetitem) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testItems) ... ok
testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestEnsemble.testToPDB) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testAppend) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testFactory) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testGetitem) ... ok
testHasStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testHasStructure) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testId) ... ok
testInsertionCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testInsertionCode) ... ok
testIsModified (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testIsModified) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testItems) ... ok
testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testLabel) ... ok
testSequenceNumber (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testSequenceNumber) ... ok
testTorsion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testTorsion) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestResidue.testType) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAccession) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testAppend) ... ok
testFirstChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFirstChain) ... ok
testFromChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testFromChain) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testGetitem) ... ok
testItems (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testItems) ... ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testRemove) ... ok
testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToFASTA) ... ok
testToPDB (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestStructure.testToPDB) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:353: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpq0ccjrvj' mode='r' encoding='UTF-8'>
  self.assertEqual(pdbraw, open(tmp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp2fgdxopr' mode='r' encoding='UTF-8'>
  self.assertEqual(pdbraw, open(tmp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testBool) ... ok
testConversion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testConversion) ... ok
testRMSD (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/structure.TestTorsionAngles.testRMSD) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testFormat) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:312: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m' mode='r' encoding='UTF-8'>
  self.a3m = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:346: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'>
  ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testHMMSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testHMMSubregion) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:358: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta' mode='r' encoding='UTF-8'>
  ref = open(self.config.getTestFile('d1nz0a_.mfasta')).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testInsertionAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testInsertionAt) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testLength) ... ok
testMatches (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testMatches) ... ok
testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testRows) ... ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testSize) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignment.testToString) ... ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testAdd) ... ok
testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testColumns) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testFormat) ... ok
testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testGapAt) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testIndexer) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testLength) ... ok
testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowColumns) ... ok
testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowMap) ... ok
testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRowResidues) ... ok
testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testRows) ... ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSize) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestA3MAlignmentSimple.testSubregion) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testAlphabet) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpa9fb8xay' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmprfsf1kjz' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testExtract) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testId) ... ok
testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIndexeres) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testLength) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSequence) ... ok
testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testStrip) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testSubregion) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testToString) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestChainSequence.testType) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testAlphabet) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpwyu0e515' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpag2mxlg6' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testExtract) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testId) ... ok
testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIndexeres) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testLength) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSequence) ... ok
testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testStrip) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testSubregion) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testToString) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestRichSequence.testType) ... ok
testAlphabet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testAlphabet) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:98: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp3p3ifunx' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfxu64u8_' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testExtract (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testExtract) ... ok
testHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testHeader) ... ok
testId (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testId) ... ok
testIndexeres (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIndexeres) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testIterator) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testLength) ... ok
testSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSequence) ... ok
testStrip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testStrip) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testSubregion) ... ok
testToString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testToString) ... ok
testType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequence.testType) ... ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testAdd) ... ok
testColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testColumns) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testFormat) ... ok
testGapAt (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testGapAt) ... ok
testIndexer (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testIndexer) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testLength) ... ok
testRowColumns (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowColumns) ... ok
testRowMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowMap) ... ok
testRowResidues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRowResidues) ... ok
testRows (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testRows) ... ok
testSize (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSize) ... ok
testSubregion (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceAlignment.testSubregion) ... ok
testToFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence.TestSequenceCollection.testToFASTA) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:151: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpr3jl4u6q' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py:157: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp6yu4fxos' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.data)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testAlignment) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testConstructor) ... ok
testEnd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testEnd) ... ok
testGaps (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testGaps) ... ok
testIdenticals (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdenticals) ... ok
testIdentity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIdentity) ... ok
testIsEmpty (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testIsEmpty) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testLength) ... ok
testQend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQend) ... ok
testQstart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQstart) ... ok
testQuery (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testQuery) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testScore) ... ok
testStart (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStart) ... ok
testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testStr) ... ok
testSubject (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestAlignmentResult.testSubject) ... ok
testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testAlign) ... ok
testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestGlobalAlignmentAlgorithm.testEmptyAlignment) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestIdentityMatrix.testScore) ... ok
testAlign (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testAlign) ... ok
testEmptyAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestLocalAlignmentAlgorithm.testEmptyAlignment) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/sequence/alignment.TestSimilarityMatrix.testScore) ... ok
testClansEntryAddingAndSorting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntryAddingAndSorting) ... ok
testClansEntrySortingWithCustomKeyFunction (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansEntrySortingWithCustomKeyFunction) ... ok
testClansInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testClansInit)
Test creating an empty L{Clans} instance. ... ok
testDuplicateEntryError (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testDuplicateEntryError) ... ok
testGetEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClans.testGetEntry) ... ok
testColorInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorInit) ... ok
testColorSetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testColorSetter) ... ok
testParseClansColorWithCorrectInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithCorrectInput) ... ok
testParseClansColorWithWrongInput (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testParseClansColorWithWrongInput) ... ok
testToClansColor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansColor.testToClansColor) ... ok
testWrittenIsIdenticalToOriginal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansFileWriter.testWrittenIsIdenticalToOriginal) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py:376: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans' mode='r' encoding='UTF-8'>
  self._clans_instance.filename)).read().split('\n', 1)[1]
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testForbiddenAssignments (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testForbiddenAssignments) ... ok
testInstatiation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testInstatiation) ... ok
testUnknownParamFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParams.testUnknownParamFail) ... ok
testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testParseFile)
Test parsing of a small dummy file with known values ... ok
testPrematureGetter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansParser.testPrematureGetter)
Test whether the premature (before parsing) access to clans_instance is ... ok
testAddingAndRemovingSeqgroups (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingAndRemovingSeqgroups) ... ok
testAddingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAddingClansEntries) ... ok
testAppendingSeqgroupsFromOtherInstance (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testAppendingSeqgroupsFromOtherInstance) ... ok
testInit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testInit) ... ok
testRemovingClansEntries (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/clans.TestClansSeqgroup.testRemovingClansEntries) ... ok
testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/procheck.TestProcheckParser.testParse) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py:248: DeprecationWarning: The binary mode of fromstring is deprecated, as it behaves surprisingly on unicode inputs. Use frombuffer instead
  array = numpy.fromstring(map_data, numpy.float32, count)
ok
testReadHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadHeader) ... ok
testReadRawHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapReader.testReadRawHeader) ... ok
testReconstructHeader (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testReconstructHeader) ... ok
testWriteDensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/mrc.TestDensityMapWriter.testWriteDensity) ... ok
testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:166: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr' mode='r' encoding='UTF-8'>
  content = open(filename).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputParser.testParseString) ... ok
testLargeHitlist (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHOutputRegressions.testLargeHitlist)
@see: [CSB 0000056] ... ok
testFormatStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testFormatStructure) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb' mode='r' encoding='UTF-8'>
  for line in open(structure_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpag2dhv8a' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseLogScales (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseLogScales) ... ok
testParseProbability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileParser.testParseProbability) ... ok
testParseRedundantA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/hhpred.TestHHProfileRegressions.testParseRedundantA3M)
@see: [CSB 0000068], [CSB 0000128] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py:48: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpgmcyuw5k' mode='r' encoding='UTF-8'>
  generated = open(tmp.name).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testCreate) ... ok
testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testGuess) ... ok
testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadFile) ... ok
testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShift3Reader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testCreate) ... ok
testGuess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testGuess) ... ok
testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadFile) ... ok
testReadShifts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/cs.TestChemShiftReader.testReadShifts) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py:49: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testCommaSplitting (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestBiomoleculeRegressions.testCommaSplitting)
@see: [CSB 0000067] ... ok
testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCombinedResidueMapper.testModifiedResidueMapping)
Strictly speaking, this is a regression test. But it so essential that ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testAdd) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testFind) ... ok
testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testGet) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestCustomProvider.testRemove) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testAccession) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testChain) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testConstructor) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testEntryID) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestDegenerateID.testFormat) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestEntryID.testFactory) ... ok
testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFastResidueMapper.testModifiedResidueMapping)
Strictly speaking, this is a regression test. But it so essential that ... ok
testAdd (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testAdd) ... ok
testFind (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testFind) ... ok
testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testGet) ... ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFileSystemProvider.testRemove) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestFind.runTest) ... ok
testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testFileName) ... ok
testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testGuessSequenceType) ... ok
testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testModels) ... ok
testParseBiomolecule (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseBiomolecule) ... ok
testParseHetMolecules (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseHetMolecules) ... ok
testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseModels) ... ok
testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidue) ... ok
testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseResidueSafe) ... ok
testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestLegacyStructureParser.testParseStructure) ... ok
testHetMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testHetMapping)
@see: [CSB 0000031] ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testNonStandardResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestMappingRegressions.testNonStandardResidueMapping)
@see: [CSB 0000052] ... ok
testCombinedMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testCombinedMapping) ... ok
testFastMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFastMapping) ... ok
testFileName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testFileName) ... ok
testGuessSequenceType (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testGuessSequenceType) ... ok
testMapper (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testMapper) ... ok
testModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testModels) ... ok
testParseModels (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseModels) ... ok
testParseResidue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidue) ... ok
testParseResidueSafe (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseResidueSafe) ... ok
testParseStructure (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testParseStructure) ... ok
testRobustMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRegularStructureParser.testRobustMapping) ... ok
testMap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testMap) ... ok
testModifiedResidueMapping (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestRobustResidueMapper.testModifiedResidueMapping) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:326: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb' mode='r' encoding='UTF-8'>
  break
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testSecStructureParsing (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSecStructureRegressions.testSecStructureParsing)
@see: [CSB 0000045] ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testAccession) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testChain) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testConstructor) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testEntryID) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestSeqResID.testFormat) ... ok
testAccession (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testAccession) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testChain) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testConstructor) ... ok
testEntryID (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testEntryID) ... ok
testFormat (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStandardID.testFormat) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/wwpdb.TestStructureParser.testFactory) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py:323: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb' mode='r' encoding='UTF-8'>
  for line in open(structure_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/whatif.TestWhatCheckParser.testParse) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:22: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadAll) ... ok
testReadFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestSparkyPeakListReader.testReadFile) ... ok
testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyFileBuilder.testBuild) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/noe.TestXeasyPeakListReader2.testRead) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py:78: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks' mode='r' encoding='UTF-8'>
  content = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmptiezh315' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestA3MOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpjmb6jsz8' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testA3mToFasta (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testA3mToFasta) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:324: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpnn4cxm_1' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), 'A-CD\nAB-D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testFastaToA3m (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestCrossAlignmentBuilding.testFastaToA3m) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:314: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpn48ae6co' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), 'ACD\nAb-D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp1f7fxssu' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestFASTAOutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp93i1y1vg' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadA3M) ... ok
testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testReadFASTA) ... ok
testStrict (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestNonStrictAlignmentReader.testStrict) ... ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestOutputBuilder.testCreate) ... ok
testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testParseString) ... ok
testReadJunk (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadJunk) ... ok
testReadNucleicSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadNucleicSequence) ... ok
testReadProteinSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPDBSequenceParser.testReadProteinSequence) ... ok
testAddAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddAlignment) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:249: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpkk6j9vft' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.alignment_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAddSequence (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestPIROutputBuilder.testAddSequence) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:239: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpci9_g0rd' mode='r' encoding='UTF-8'>
  self.assertEqual(open(tmp.name).read().strip(), self.sequence_string)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testReadA3M (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadA3M) ... ok
testReadFASTA (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceAlignmentReader.testReadFASTA) ... ok
testParseFile (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseFile) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py:19: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa' mode='r' encoding='UTF-8'>
  self.data = open(self.file).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testParseString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testParseString) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestSequenceParser.testRead) ... ok
testMakeAlignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeAlignment) ... ok
testMakeEntry (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/io/fasta.TestStructureAlignmentFactory.testMakeEntry) ... ok
testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnected) ... ok
testConnectedAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testConnectedAtoms) ... ok
testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testContains) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testFactory) ... ok
testGetAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestAtomConnectivity.testGetAtoms) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testConstructor) ... ok
testLabel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftInfo.testLabel) ... ok
testNegative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testNegative) ... ok
testPositive (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testPositive) ... ok
testScore (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestChemShiftScoringModel.testScore) ... ok
testAtomContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtomContacts) ... ok
testAtoms (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testAtoms) ... ok
testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testBuild) ... ok
testChain (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testChain) ... ok
testCompare (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCompare) ... ok
testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnect) ... ok
testConnected (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testConnected) ... ok
testContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContacts) ... ok
testContains (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testContains) ... ok
testCutoff (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testCutoff) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testIterator) ... ok
testPosition (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testPosition) ... ok
testResidueContacts (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestContactMap.testResidueContacts) ... ok
testBuild (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testBuild) ... ok
testFromAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromAtom) ... ok
testFromShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromShift) ... ok
testFromString (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testFromString) ... ok
testGetAtom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testGetAtom) ... ok
testMatch (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testMatch) ... ok
testParse (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestLabel.testParse) ... ok
testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testConnectedDimensions) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testElement) ... ok
testGet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testGet) ... ok
testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasConnectedDimensions) ... ok
testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testHasElement) ... ok
testIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testIntensity) ... ok
testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOEPeak.testNumDimensions) ... ok
testConnect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnect) ... ok
testConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testConnectedDimensions) ... ok
testDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testDimensions) ... ok
testElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testElement) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testGetitem) ... ok
testHasConnectedDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasConnectedDimensions) ... ok
testHasElement (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testHasElement) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testIterator) ... ok
testLen (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testLen) ... ok
testMaxIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMaxIntensity) ... ok
testMinIntensity (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testMinIntensity) ... ok
testNumDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumDimensions) ... ok
testNumProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testNumProtonDimensions) ... ok
testProtonDimensions (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestNOESpectrum.testProtonDimensions) ... ok
testFactory (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testFactory) ... ok
testSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSecondaryShift) ... ok
testSimpleSecondaryShift (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/bio/nmr.TestRandomCoil.testSimpleSecondaryShift) ... ok
testEnsemble (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testEnsemble)
The posterior of a gaussian scale mixture with gamma prior ... ok
testGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGamma)
The posterior of a gaussian scale mixture with gamma prior ... ok
testGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testGammaMAP)
The posterior of a gaussian scale mixture with gamma prior ... ok
testInvGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGamma)
The posterior of a gaussian scale mixture with gamma prior ... ok
testInvGammaMAP (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testInvGammaMAP)
The posterior of a gaussian scale mixture with gamma prior ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testLogProb) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/scalemixture.TestScaleMixture.testRandom) ... ok
testMaxent (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/maxe.TestMaxent.testMaxent) ... skipped 'slow'
testConformerMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testConformerMixture) ... ok
testSegmentMixture (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/mixtures.TestMixtures.testSegmentMixture) ... ok
testAutorcorrelation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testAutorcorrelation) ... ok
testCircmean (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircmean) ... ok
testCircvar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCircvar) ... ok
testCumulative (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testCumulative) ... ok
testEntropy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testEntropy) ... ok
testKurtosis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testKurtosis) ... ok
testSkewness (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics.TestStatFunction.testSkewness) ... ok
testSampleFromHistogram (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testSampleFromHistogram) ... ok
testTruncatedGamma (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedGamma) ... ok
testTruncatedNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/rand.TestRand.testTruncatedNormal) ... ok
testNormal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/ars.TestARS.testNormal) ... ok
testAcceptSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testAcceptSwap) ... ok
testSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractExchangeMC.testSwap) ... ok
testAcceptProposal (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptProposal) ... ok
testAcceptanceRate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testAcceptanceRate) ... ok
testEnergy (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testEnergy) ... ok
testLastMoveAccepted (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testLastMoveAccepted) ... ok
testSample (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testSample) ... ok
testTemperature (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testTemperature) ... ok
testUpdateStatistics (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestAbstractSingleChainMC.testUpdateStatistics) ... ok
testCalcPacc (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testCalcPacc) ... ok
testHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testHamiltonian) ... ok
testPropose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestHMCSampler.testPropose) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py:1018: RuntimeWarning: covariance is not symmetric positive-semidefinite.
  initmom = np.random.multivariate_normal(mean=np.zeros(len(self._initstate.position)),
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py:319: RuntimeWarning: covariance is not symmetric positive-semidefinite.
  momentum = numpy.random.multivariate_normal(mean=numpy.zeros(d),
ok
testHMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagator) ... ok
testHMCPropagatorMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testHMCPropagatorMM) ... ok
testNCMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testNCMCPropagator) ... skipped 'Takes quite a long time to run.'
testRWMCPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMCPropagators.testRWMCPropagator) ... ok
testHMCStepRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testHMCStepRENS) ... ok
testMDRENS (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testMDRENS) ... ok
testReplicaExchangeMC (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testReplicaExchangeMC) ... skipped 'Takes some time, rendered optional by a unit test.'
testThermostattedMDRens (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRens) ... ok
testThermostattedMDRensMM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestMultichain.testThermostattedMDRensMM) ... ok
testProposeWithMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithMomentum) ... ok
testProposeWithoutMomentum (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNCMCSampler.testProposeWithoutMomentum) ... ok
testHMCPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testHMCPropagation) ... ok
testNonequilibriumStepPropagator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testNonequilibriumStepPropagator) ... ok
testPlainMDPropagation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testPlainMDPropagation) ... ok
testReducedHamiltonian (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonian) ... ok
testReducedHamiltonianPerturbation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testReducedHamiltonianPerturbation) ... ok
testStep (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestNeqsteppropagator.testStep) ... ok
testCalcPaccSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testCalcPaccSwap) ... ok
testProposeSwap (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaExchangeMC.testProposeSwap) ... ok
testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas) ... ERROR
testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset) ... ERROR
testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas) ... ERROR
testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas) ... ERROR
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testSet) ... ok
testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestAbstractGenericParameter.testValue) ... ok
testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testBindTo) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testConstructor) ... ok
testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testIsVirtual) ... ok
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestNonVirtualParameter.testSet) ... ok
testBindTo (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testBindTo) ... ok
testConstrucor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testConstrucor) ... ok
testFindBaseParameter (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testFindBaseParameter) ... ok
testIsVirtual (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testIsVirtual) ... ok
testName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testName) ... ok
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testSet) ... ok
testValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameter.testValue) ... ok
testAssignment (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testAssignment) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testConstructor) ... ok
testParameterChaining (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testParameterChaining) ... ok
testProperties (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf/parameterized.TestParameterizedDensity.testProperties) ... ok
testParameterValidation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDensityRegressions.testParameterValidation)
@see: [CSB 0000132] ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestDirichlet.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGamma.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testLogProb) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedInverseGaussian.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGeneralizedNormal.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMaximum.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestGumbelMinimum.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testLogProb) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGamma.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestInverseGaussian.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestLaplace.testRandom) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestMultivariateGaussian.testParameters) ... ok
testLogProb (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testLogProb) ... ok
testParameterEstimation (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameterEstimation) ... ok
testParameters (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testParameters) ... ok
testRandom (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/pdf.TestNormal.testRandom) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testGetitem) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractContainer.testIterator) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testGetitem) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestAbstractNIContainer.testIterator) ... ok
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testAppend) ... ok
testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testBool) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testConstructor) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testGetitem) ... ok
testIndices (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testIndices) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testLength) ... ok
testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestCollectionContainer.testUpdate) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest) ... ERROR
testAppend (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testAppend) ... ok
testBool (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testBool) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testConstructor) ... ok
testGetitem (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testGetitem) ... ok
testLength (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testLength) ... ok
testRemove (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testRemove) ... ok
testSet (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testSet) ... ok
testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDictionaryContainer.testUpdate) ... ok
testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison) ... FAIL
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testConstructor) ... ok
testCreate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testCreate) ... ok
testInOperator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testInOperator) ... ok
testIsMember (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIsMember) ... ok
testIterator (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testIterator) ... ok
testMembers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMembers) ... ok
testMutability (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testMutability) ... ok
testNames (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testNames) ... ok
testParseName (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseName) ... ok
testParseValue (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testParseValue) ... ok
testRepr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testRepr) ... ok
testSerialization (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testSerialization) ... ok
testStr (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testStr) ... ok
testValues (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testValues) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestIterable.runTest) ... ok
runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestOrderedDict.runTest) ... ok
testNonparametricWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testNonparametricWHAM) ... ok
testWHAM (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/wham.TestWHAM.testWHAM) ... ok
testBoltzmann (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testBoltzmann) ... ok
testComposite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testComposite) ... ok
testTsallis (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statmech/ensembles.TestEnergy.testTsallis) ... ok
testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestAutoFlushStream.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:199: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp63l_24si' mode='r' encoding='UTF-8'>
  content = open(self.temp.name).read()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzip) ... ok
testGzipFail (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testGzipFail) ... ok
testLock (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLock) ... ok
testLockGzip (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testLockGzip) ... ok
testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit) ... FAIL
testSimple (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testSimple) ... ok
testAllMarkers (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testAllMarkers) ... ok
testDel (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testDel) ... ok
testRead (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testRead) ... ok
testReadAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testReadAll) ... ok
testStartMarker (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryReader.testStartMarker) ... ok
testConstructor (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testConstructor) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testContextManager) ... ok
testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWrite) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:439: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmp55q6q1zs' mode='r' encoding='UTF-8'>
  self.assertEqual(open(temp.name).read(), 'D')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWriteAll (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteAll) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:459: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpevj5nhx1' mode='r' encoding='UTF-8'>
  self.assertEqual(open(temp.name).read(), 'A/B/C/')
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testWriteLine (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestEntryWriter.testWriteLine) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:449: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpfebspeg8' mode='r' encoding='UTF-8'>
  self.assertEqual(open(temp.name).read(), 'D' + csb.io.NEWLINE)
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testClose) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testContextManager) ... ok
testFlush (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testFlush) ... ok
testWrite (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestMemoryStream.testWrite) ... ok
testExitCode (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testExitCode) ... ok
testSTDERR (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDERR) ... ok
testSTDOUT (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestShell.testSTDOUT) ... ok
testArrayCompatibility (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testArrayCompatibility) ... ok
testDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDataAccess) ... ok
testDump (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testDump) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv' mode='r' encoding='UTF-8'>
  self.assertEqual(open(self.tsv).read(), open(dump.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpyjr8hejb' mode='r' encoding='UTF-8'>
  self.assertEqual(open(self.tsv).read(), open(dump.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testInsert (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testInsert) ... ok
testIteration (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testIteration) ... ok
testSQLDataAccess (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSQLDataAccess) ... ok
testScalar (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testScalar) ... ok
testSelect (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testSelect) ... ok
testUpdate (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testUpdate) ... ok
testWhere (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTable.testWhere) ... ok
testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testAutoCleanup) ... ok
testCallForwarding (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testCallForwarding) ... ok
testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testClose) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testContextManager) ... ok
testMultipleHandles (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFile.testMultipleHandles) ... /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py:287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/tmp/tmpbm7lu9_9' mode='r' encoding='UTF-8'>
  self.assertEqual(data, open(temp.name).read())
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
testAutoCleanup (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testAutoCleanup) ... ok
testClose (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testClose) ... ok
testContextManager (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestTempFolder.testContextManager) ... ok

======================================================================
ERROR: testFiveReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicas)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 899, in testFiveReplicas
    assert(self._assertIdenticalProjTrajs(samples, swap_interval))
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (85,) (75,) 

======================================================================
ERROR: testFiveReplicasOffset (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFiveReplicasOffset)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 909, in testFiveReplicasOffset
    assert(self._assertIdenticalProjTrajs(samples, swap_interval, first_swap))
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (103,) (73,) 

======================================================================
ERROR: testFourReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testFourReplicas)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 889, in testFourReplicas
    assert(self._assertIdenticalProjTrajs(samples, swap_interval))
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (125,) (105,) 

======================================================================
ERROR: testTwoReplicas (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/statistics/samplers.TestReplicaHistory.testTwoReplicas)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 879, in testTwoReplicas
    assert(self._assertIdenticalProjTrajs(samples, swap_interval))
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py", line 866, in _assertIdenticalProjTrajs
    ok.append(True in [np.all(np.array(t1) == np.array(t2)) for t1 in trajs1
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
ValueError: operands could not be broadcast together with shapes (195,) (305,) 

======================================================================
ERROR: runTest (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestDeepCopy.runTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py", line 21, in runTest
    self.assertNotEquals(id(obj), id(copy))
    ^^^^^^^^^^^^^^^^^^^^
AttributeError: 'TestDeepCopy' object has no attribute 'assertNotEquals'. Did you mean: 'assertNotEqual'?

======================================================================
FAIL: testComparison (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/core.TestEnum.testComparison)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py", line 73, in testComparison
    self.assertFalse(self.enum.C == 66)
    ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^
AssertionError: True is not false

======================================================================
FAIL: testRecusionLimit (build/reproducible-path/python-csb-1-2-5+dfsg/-pybuild/cpython3_3-13_csb/build/csb/test/cases/io.TestDumpLoad.testRecusionLimit)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py", line 528, in testRecusionLimit
    with self.assertRaises(RuntimeError):
         ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^
AssertionError: RuntimeError not raised

----------------------------------------------------------------------
Ran 697 tests in 125.183s

FAILED (failures=2, errors=5, skipped=6)
make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -O--buildsystem=pybuild
   dh_prep -O--buildsystem=pybuild
   dh_auto_install -O--buildsystem=pybuild
I: pybuild base:311: /usr/bin/python3.12 setup.py install --root /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running egg_info
writing csb.egg-info/PKG-INFO
writing dependency_links to csb.egg-info/dependency_links.txt
writing entry points to csb.egg-info/entry_points.txt
writing requirements to csb.egg-info/requires.txt
writing top-level names to csb.egg-info/top_level.txt
reading manifest file 'csb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.*' under directory 'docs'
warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data'
adding license file 'LICENSE.rst'
writing manifest file 'csb.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.bio.nmr.resources' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.bio.nmr.resources' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.bio.nmr.resources' to be distributed and are
        already explicitly excluding 'csb.bio.nmr.resources' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.test.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.test.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.test.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.test.data' to be distributed and are
        already explicitly excluding 'csb.test.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
running install_lib
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/data
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__
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copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__pycache__/pseudocounts.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__pycache__
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copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence
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creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__
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copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/clans.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/procheck.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/dssp.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/hhpred.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/mrc.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/noe.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/cs.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__pycache__/whatif.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/resources
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/scalemixture.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/rand.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/ars.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/maxent.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__pycache__/mixtures.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/wham.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__pycache__/ensembles.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__pycache__/tsv.cpython-312.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.12_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/integrators.py to integrators.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/numeric/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/app.py to app.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/vasco.py to vasco.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/cs.py to cs.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/fasta.py to fasta.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/svg.py to svg.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/mrc.py to mrc.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/clans.py to clans.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py to whatif.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py to procheck.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.12/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/psipred.py to psipred.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/dssp.py to dssp.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/io/noe.py to noe.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/precision.py to precision.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/embd.py to embd.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/promix.py to promix.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/helloworld.py to helloworld.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/csfrag.py to csfrag.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/bfit.py to bfit.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/bfite.py to bfite.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/apps/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/build.py to build.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/maxent.py to maxent.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py to __init__.cpython-312.pyc
/usr/lib/python3.12/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/rand.py to rand.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statistics/ars.py to ars.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/core/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/wham.py to wham.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/statmech/__init__.py to __init__.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/plots.py to plots.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/tsv.py to tsv.cpython-312.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb/io/__init__.py to __init__.cpython-312.pyc
running install_egg_info
Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.12/dist-packages/csb-1.2.5.egg-info
Skipping SOURCES.txt
running install_scripts
Installing csb-bfit script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-bfite script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-buildhmm script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-csfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-embd script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-hhfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-hhsearch script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-precision script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-promix script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-test script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb 
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite'
  warnings.warn(msg)
Warning: 'classifiers' should be a list, got type 'tuple'
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running build
running build_py
running egg_info
writing csb.egg-info/PKG-INFO
writing dependency_links to csb.egg-info/dependency_links.txt
writing entry points to csb.egg-info/entry_points.txt
writing requirements to csb.egg-info/requires.txt
writing top-level names to csb.egg-info/top_level.txt
reading manifest file 'csb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.*' under directory 'docs'
warning: no previously-included files matching '*.pickle' found under directory 'csb/test/data'
adding license file 'LICENSE.rst'
writing manifest file 'csb.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.bio.nmr.resources' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.bio.nmr.resources' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.bio.nmr.resources' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.bio.nmr.resources' to be distributed and are
        already explicitly excluding 'csb.bio.nmr.resources' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:212: _Warning: Package 'csb.test.data' is absent from the `packages` configuration.
!!

        ********************************************************************************
        ############################
        # Package would be ignored #
        ############################
        Python recognizes 'csb.test.data' as an importable package[^1],
        but it is absent from setuptools' `packages` configuration.

        This leads to an ambiguous overall configuration. If you want to distribute this
        package, please make sure that 'csb.test.data' is explicitly added
        to the `packages` configuration field.

        Alternatively, you can also rely on setuptools' discovery methods
        (for example by using `find_namespace_packages(...)`/`find_namespace:`
        instead of `find_packages(...)`/`find:`).

        You can read more about "package discovery" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

        If you don't want 'csb.test.data' to be distributed and are
        already explicitly excluding 'csb.test.data' via
        `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
        you can try to use `exclude_package_data`, or `include-package-data=False` in
        combination with a more fine grained `package-data` configuration.

        You can read more about "package data files" on setuptools documentation page:

        - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


        [^1]: For Python, any directory (with suitable naming) can be imported,
              even if it does not contain any `.py` files.
              On the other hand, currently there is no concept of package data
              directory, all directories are treated like packages.
        ********************************************************************************

!!
  check.warn(importable)
running install_lib
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2JZC.sum -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1b24a2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1C3W_10.mrc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test.fa -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v2.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/out.clans -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3shm_ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/modified.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.legacy.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping3.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Sparky.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ake-xray-ensemble-ca.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/csb.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/pdbout.txt -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/test2.hhm -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy2.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/ISL5.1.isl -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/3p1u.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/2l01.v3.str -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/Xeasy1.peaks -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1nz0a_.a3m -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/standard.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/mapping2.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/d1ea0a1.hhr -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1nz9A.frags -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/1d3z.regular.pdb -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/data/struct.ali.mfasta -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/data
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/app.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/integrators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/integrators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/numeric/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/alignment/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/clans/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/procheck/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/mrc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/hhpred/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/cs/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/wwpdb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/whatif/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/noe/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/io/fasta/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/test/cases/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__pycache__
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copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/utils/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/rosetta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/rosetta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/fragments/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/pseudocounts.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__
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copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/hmm/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__pycache__
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copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/structure/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/alignment.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/alignment.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/sequence/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/wwpdb.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/vasco.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/cs.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/fasta.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/svg.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/hhpred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/mrc.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/noe.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/fasta.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/whatif.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/procheck.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/hhpred.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/cs.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/dssp.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/mrc.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/clans.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__pycache__/wwpdb.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/clans.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/whatif.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/procheck.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/psipred.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/dssp.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/io/noe.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/AtomConnectivity.xml -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Corrections.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/resources/RandomCoil.Reference.tsv -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/resources
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/bio/nmr/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/precision.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/hhsearch.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/buildhmm.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/embd.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/promix.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/helloworld.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/csfrag.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfit.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/bfite.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/apps/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/build.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__pycache__
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/singlechain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/propagators.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/neqsteppropagator.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/propagators.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/multichain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__pycache__/singlechain.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/neqsteppropagator.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/mc/multichain.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/samplers/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/parameterized.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/parameterized.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/pdf/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/scalemixture.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/mixtures.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/rand.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/scalemixture.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/ars.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__pycache__/maxent.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/maxent.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/mixtures.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/rand.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statistics/ars.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/core/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/wham.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/ensembles.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/wham.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/ensembles.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/statmech/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/plots.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io
creating /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/tsv.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__pycache__
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/tsv.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io
copying /build/reproducible-path/python-csb-1.2.5+dfsg/.pybuild/cpython3_3.13_csb/build/csb/io/__init__.py -> /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/integrators.py to integrators.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/numeric/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/app.py to app.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/integrators.py to integrators.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/numeric/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/utils/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/fragments/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/hmm/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/structure/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/alignment/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/sequence/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/clans/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/procheck/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/mrc/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/hhpred/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/cs/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/wwpdb/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/whatif/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/noe/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/io/fasta/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/bio/nmr/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/samplers/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/pdf/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/scalemixture.py to scalemixture.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/maxent.py to maxent.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/mixtures.py to mixtures.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/rand.py to rand.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statistics/ars.py to ars.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/core/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/wham.py to wham.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/ensembles.py to ensembles.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/statmech/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py to __init__.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/utils/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/rosetta.py to rosetta.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/fragments/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/pseudocounts.py to pseudocounts.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/hmm/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py to __init__.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/alignment.py to alignment.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py to __init__.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py to wwpdb.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/vasco.py to vasco.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/cs.py to cs.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/fasta.py to fasta.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/svg.py to svg.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py to hhpred.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/mrc.py to mrc.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/clans.py to clans.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py to whatif.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py to procheck.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s'
/usr/lib/python3.13/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/psipred.py to psipred.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/dssp.py to dssp.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/io/noe.py to noe.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/bio/nmr/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhfrag.py to hhfrag.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/precision.py to precision.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/hhsearch.py to hhsearch.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/buildhmm.py to buildhmm.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/embd.py to embd.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/promix.py to promix.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/helloworld.py to helloworld.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/csfrag.py to csfrag.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfit.py to bfit.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/bfite.py to bfite.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/apps/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/build.py to build.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/singlechain.py to singlechain.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/propagators.py to propagators.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/neqsteppropagator.py to neqsteppropagator.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/mc/multichain.py to multichain.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/samplers/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/parameterized.py to parameterized.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/pdf/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/scalemixture.py to scalemixture.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/maxent.py to maxent.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/mixtures.py to mixtures.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py to __init__.cpython-313.pyc
/usr/lib/python3.13/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s'
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/rand.py to rand.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statistics/ars.py to ars.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/core/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/wham.py to wham.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/ensembles.py to ensembles.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/statmech/__init__.py to __init__.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/plots.py to plots.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/tsv.py to tsv.cpython-313.pyc
byte-compiling /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb/io/__init__.py to __init__.cpython-313.pyc
running install_egg_info
Copying csb.egg-info to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/lib/python3.13/dist-packages/csb-1.2.5.egg-info
Skipping SOURCES.txt
running install_scripts
Installing csb-bfit script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-bfite script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-buildhmm script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-csfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-embd script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-hhfrag script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-hhsearch script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-precision script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-promix script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
Installing csb-test script to /build/reproducible-path/python-csb-1.2.5+dfsg/debian/python3-csb/usr/bin
   debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/python-csb-1.2.5+dfsg'
dh_install
mkdir -p debian/csb/usr
mv debian/python3-csb/usr/bin debian/csb/usr
make[1]: Leaving directory '/build/reproducible-path/python-csb-1.2.5+dfsg'
   dh_installdocs -O--buildsystem=pybuild
   dh_installchangelogs -O--buildsystem=pybuild
   dh_installman -O--buildsystem=pybuild
   dh_python3 -O--buildsystem=pybuild
   dh_installsystemduser -O--buildsystem=pybuild
   dh_perl -O--buildsystem=pybuild
   dh_link -O--buildsystem=pybuild
   dh_strip_nondeterminism -O--buildsystem=pybuild
   dh_compress -O--buildsystem=pybuild
   dh_fixperms -O--buildsystem=pybuild
   dh_missing -O--buildsystem=pybuild
   dh_installdeb -O--buildsystem=pybuild
   dh_gencontrol -O--buildsystem=pybuild
   dh_md5sums -O--buildsystem=pybuild
   dh_builddeb -O--buildsystem=pybuild
dpkg-deb: building package 'python3-csb' in '../python3-csb_1.2.5+dfsg-10_all.deb'.
dpkg-deb: building package 'csb' in '../csb_1.2.5+dfsg-10_all.deb'.
 dpkg-genbuildinfo --build=binary -O../python-csb_1.2.5+dfsg-10_i386.buildinfo
 dpkg-genchanges --build=binary -O../python-csb_1.2.5+dfsg-10_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/40014/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/40014 and its subdirectories
I: Current time: Fri Feb 21 02:40:25 +14 2025
I: pbuilder-time-stamp: 1740055225