I: pbuilder: network access will be disabled during build I: Current time: Sun Apr 12 19:48:54 +14 2026 I: pbuilder-time-stamp: 1775972934 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/54667/tmp/hooks/D01_modify_environment starting debug: Running on ionos16-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Apr 12 05:49 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/54667/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/54667/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=8d8bd234e366421a8dcbaeb855111898 LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=54667 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.kDljIzU2/pbuilderrc_WQAR --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.kDljIzU2/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/54667/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After unpacking 161 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 libproc2-0 i386 2:4.0.4-7 [66.0 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 procps i386 2:4.0.4-7 [876 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-7 [301 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 cmake-data all 3.31.6-1 [2268 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive13t64 i386 3.7.4-1.1 [390 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB] Get: 24 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 27 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-4 [354 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-9 [20.8 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-9 [61.2 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.8.0-1 [78.7 kB] Get: 36 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libp11-kit0 i386 0.25.5-3 [423 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libcurl4t64 i386 8.12.1-3 [415 kB] Get: 44 http://deb.debian.org/debian trixie/main i386 libexpat1 i386 2.6.4-1 [107 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libjsoncpp26 i386 1.9.6-3 [90.0 kB] Get: 46 http://deb.debian.org/debian trixie/main i386 librhash1 i386 1.4.5-1 [144 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libuv1t64 i386 1.50.0-2 [163 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 cmake i386 3.31.6-1 [13.1 MB] Get: 49 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian trixie/main i386 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libcereal-dev i386 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libedlib1 i386 1.2.7-6+b3 [17.9 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libedlib-dev i386 1.2.7-6+b3 [22.9 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libgtest-dev i386 1.16.0-1 [274 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libspoa7.0.0 i386 4.1.4-2+b1 [92.7 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libspoa-dev i386 4.1.4-2+b1 [9800 B] Get: 72 http://deb.debian.org/debian trixie/main i386 libthread-pool-dev i386 4.0.0-2 [7296 B] Get: 73 http://deb.debian.org/debian trixie/main i386 rampler i386 2.1.1-1 [22.5 kB] Fetched 44.6 MB in 1s (85.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:i386. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19787 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_i386.deb ... Unpacking libproc2-0:i386 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_i386.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic1t64:i386 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_i386.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_i386.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_i386.deb ... Unpacking libuchardet0:i386 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_i386.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-5_i386.deb ... Unpacking bsdextrautils (2.40.4-5) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../10-libpipeline1_1.5.8-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_i386.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-7_i386.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.6-1_all.deb ... Unpacking cmake-data (3.31.6-1) ... Selecting previously unselected package libicu72:i386. Preparing to unpack .../18-libicu72_72.1-6_i386.deb ... Unpacking libicu72:i386 (72.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b2_i386.deb ... Unpacking libxml2:i386 (2.12.7+dfsg+really2.9.14-0.2+b2) ... Selecting previously unselected package libarchive13t64:i386. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_i386.deb ... Unpacking libarchive13t64:i386 (3.7.4-1.1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/54667/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/54667/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j21 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu 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40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /build/reproducible-path/racon-1.5.0/src/overlap.cpp: In member function 'virtual void racon::Overlap::align_overlaps(const char*, uint32_t, const char*, uint32_t)': /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:48: warning: format '%zu' expects argument of type 'size_t', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/overlap.cpp:219:54: warning: format '%zu' expects argument of type 'size_t', but argument 4 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 219 | "edlib unable to align pair (%zu x %zu)!\n", q_id_, t_id_); | ~~^ ~~~~~ | | | | unsigned int uint64_t {aka long long unsigned int} | %llu /build/reproducible-path/racon-1.5.0/src/window.cpp: In member function 'bool racon::Window::generate_consensus(std::shared_ptr, bool)': /build/reproducible-path/racon-1.5.0/src/window.cpp:142:27: warning: format '%lu' expects argument of type 'long unsigned int', but argument 3 has type 'uint64_t' {aka 'long long unsigned int'} [-Wformat=] 142 | "contig %lu might be chimeric in window %u!\n", id_, rank_); | ~~^ ~~~ | | | | long unsigned int uint64_t {aka long long unsigned int} | %llu [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -ffloat-store -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/i386-linux-gnu/libgtest_main.a /usr/lib/i386-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (0 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (0 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (3 ms) [----------] 5 tests from RaconInitializeTest (10 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001085 s [racon::Polisher::initialize] loaded sequences 0.037020 s [racon::Polisher::initialize] loaded overlaps 0.000654 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.040412 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.073059 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.098384 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.125726 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.144700 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.163901 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.225114 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.266641 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.279422 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.300046 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.348941 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.381582 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.417540 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.440411 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.475973 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.533186 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.547003 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.567642 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.583788 s [racon::Polisher::initialize] aligning overlaps [====================] 0.587447 s [racon::Polisher::initialize] transformed data into windows 0.021735 s [racon::Polisher::polish] generating consensus [=> ] 0.466862 s [racon::Polisher::polish] generating consensus [==> ] 0.891461 s [racon::Polisher::polish] generating consensus [===> ] 1.236103 s [racon::Polisher::polish] generating consensus [====> ] 1.687211 s [racon::Polisher::polish] generating consensus [=====> ] 1.816996 s [racon::Polisher::polish] generating consensus [======> ] 1.971188 s [racon::Polisher::polish] generating consensus [=======> ] 2.114952 s [racon::Polisher::polish] generating consensus [========> ] 2.362035 s [racon::Polisher::polish] generating consensus [=========> ] 2.649385 s [racon::Polisher::polish] generating consensus [==========> ] 2.992970 s [racon::Polisher::polish] generating consensus [===========> ] 3.506905 s [racon::Polisher::polish] generating consensus [============> ] 3.914393 s [racon::Polisher::polish] generating consensus [=============> ] 4.637401 s [racon::Polisher::polish] generating consensus [==============> ] 5.402031 s [racon::Polisher::polish] generating consensus [===============> ] 6.075203 s [racon::Polisher::polish] generating consensus [================> ] 6.504337 s [racon::Polisher::polish] generating consensus [=================> ] 7.066796 s [racon::Polisher::polish] generating consensus [==================> ] 7.405809 s [racon::Polisher::polish] generating consensus [===================>] 7.743090 s [racon::Polisher::polish] generating consensus [====================] 9.620554 s [racon::Polisher::] total = 10.296701 s [ OK ] RaconPolishingTest.ConsensusWithQualities (10310 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000483 s [racon::Polisher::initialize] loaded sequences 0.015488 s [racon::Polisher::initialize] loaded overlaps 0.000405 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.046879 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.083048 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.120480 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.143710 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.160544 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.171907 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.201370 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.251352 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.261952 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.283278 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.301426 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.342501 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.354170 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.382782 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.415237 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.470453 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.484225 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.502529 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.520806 s [racon::Polisher::initialize] aligning overlaps [====================] 0.541392 s [racon::Polisher::initialize] transformed data into windows 0.000488 s [racon::Polisher::polish] generating consensus [=> ] 0.505816 s [racon::Polisher::polish] generating consensus [==> ] 1.077812 s [racon::Polisher::polish] generating consensus [===> ] 1.490108 s [racon::Polisher::polish] generating consensus [====> ] 1.819415 s [racon::Polisher::polish] generating consensus [=====> ] 2.031128 s [racon::Polisher::polish] generating consensus [======> ] 2.263162 s [racon::Polisher::polish] generating consensus [=======> ] 2.493218 s [racon::Polisher::polish] generating consensus [========> ] 2.720450 s [racon::Polisher::polish] generating consensus [=========> ] 3.203261 s [racon::Polisher::polish] generating consensus [==========> ] 4.077907 s [racon::Polisher::polish] generating consensus [===========> ] 4.941927 s [racon::Polisher::polish] generating consensus [============> ] 6.325909 s [racon::Polisher::polish] generating consensus [=============> ] 7.857904 s [racon::Polisher::polish] generating consensus [==============> ] 9.752093 s [racon::Polisher::polish] generating consensus [===============> ] 11.281915 s [racon::Polisher::polish] generating consensus [================> ] 12.973959 s [racon::Polisher::polish] generating consensus [=================> ] 14.017920 s [racon::Polisher::polish] generating consensus [==================> ] 14.753906 s [racon::Polisher::polish] generating consensus [===================>] 16.069913 s [racon::Polisher::polish] generating consensus [====================] 20.790215 s [racon::Polisher::] total = 21.372458 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (21387 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000473 s [racon::Polisher::initialize] loaded sequences 0.034039 s [racon::Polisher::initialize] loaded overlaps 0.019286 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.002403 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002530 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002687 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002772 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002887 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003006 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003177 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003269 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003414 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003517 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003669 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003796 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003935 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.004025 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004189 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004268 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004320 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004421 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004476 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004553 s [racon::Polisher::initialize] transformed data into windows 0.020215 s [racon::Polisher::polish] generating consensus [=> ] 0.460210 s [racon::Polisher::polish] generating consensus [==> ] 0.890472 s [racon::Polisher::polish] generating consensus [===> ] 1.242158 s [racon::Polisher::polish] generating consensus [====> ] 1.837554 s [racon::Polisher::polish] generating consensus [=====> ] 1.837590 s [racon::Polisher::polish] generating consensus [======> ] 1.982912 s [racon::Polisher::polish] generating consensus [=======> ] 2.163161 s [racon::Polisher::polish] generating consensus [========> ] 2.347122 s [racon::Polisher::polish] generating consensus [=========> ] 2.540251 s [racon::Polisher::polish] generating consensus [==========> ] 2.915091 s [racon::Polisher::polish] generating consensus [===========> ] 3.343773 s [racon::Polisher::polish] generating consensus [============> ] 3.987390 s [racon::Polisher::polish] generating consensus [=============> ] 4.782989 s [racon::Polisher::polish] generating consensus [==============> ] 5.659736 s [racon::Polisher::polish] generating consensus [===============> ] 6.359881 s [racon::Polisher::polish] generating consensus [================> ] 6.818220 s [racon::Polisher::polish] generating consensus [=================> ] 7.371686 s [racon::Polisher::polish] generating consensus [==================> ] 7.714631 s [racon::Polisher::polish] generating consensus [===================>] 8.043526 s [racon::Polisher::polish] generating consensus [====================] 9.346575 s [racon::Polisher::] total = 9.452665 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (9466 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000462 s [racon::Polisher::initialize] loaded sequences 0.014869 s [racon::Polisher::initialize] loaded overlaps 0.018734 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.002182 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002345 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002543 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002641 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002800 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002947 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003202 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003327 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003483 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003618 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003844 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.004030 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.004148 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.004225 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004338 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004438 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004522 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004535 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004612 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004694 s [racon::Polisher::initialize] transformed data into windows 0.000418 s [racon::Polisher::polish] generating consensus [=> ] 0.458819 s [racon::Polisher::polish] generating consensus [==> ] 0.970813 s [racon::Polisher::polish] generating consensus [===> ] 1.369668 s [racon::Polisher::polish] generating consensus [====> ] 1.672598 s [racon::Polisher::polish] generating consensus [=====> ] 1.848029 s [racon::Polisher::polish] generating consensus [======> ] 2.046827 s [racon::Polisher::polish] generating consensus [=======> ] 2.250795 s [racon::Polisher::polish] generating consensus [========> ] 2.539299 s [racon::Polisher::polish] generating consensus [=========> ] 2.828013 s [racon::Polisher::polish] generating consensus [==========> ] 3.305237 s [racon::Polisher::polish] generating consensus [===========> ] 3.859115 s [racon::Polisher::polish] generating consensus [============> ] 4.548209 s [racon::Polisher::polish] generating consensus [=============> ] 5.593651 s [racon::Polisher::polish] generating consensus [==============> ] 6.422071 s [racon::Polisher::polish] generating consensus [===============> ] 7.233871 s [racon::Polisher::polish] generating consensus [================> ] 7.974333 s [racon::Polisher::polish] generating consensus [=================> ] 8.641566 s [racon::Polisher::polish] generating consensus [==================> ] 9.033043 s [racon::Polisher::polish] generating consensus [===================>] 9.470487 s [racon::Polisher::polish] generating consensus [====================] 11.977624 s [racon::Polisher::] total = 12.035187 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (12049 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000493 s [racon::Polisher::initialize] loaded sequences 0.033273 s [racon::Polisher::initialize] loaded overlaps 0.000305 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.057870 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.088650 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.118710 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.138991 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.166055 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.189286 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.247256 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.276432 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.299249 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.319391 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.348491 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.373104 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.398481 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.411251 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.427708 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.445244 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.459928 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.481518 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.520332 s [racon::Polisher::initialize] aligning overlaps [====================] 0.547442 s [racon::Polisher::initialize] transformed data into windows 0.021410 s [racon::Polisher::polish] generating consensus [=> ] 1.721334 s [racon::Polisher::polish] generating consensus [==> ] 1.721367 s [racon::Polisher::polish] generating consensus [===> ] 3.183748 s [racon::Polisher::polish] generating consensus [====> ] 3.184127 s [racon::Polisher::polish] generating consensus [=====> ] 3.882236 s [racon::Polisher::polish] generating consensus [======> ] 3.882267 s [racon::Polisher::polish] generating consensus [=======> ] 4.433238 s [racon::Polisher::polish] generating consensus [========> ] 4.433455 s [racon::Polisher::polish] generating consensus [=========> ] 5.485789 s [racon::Polisher::polish] generating consensus [==========> ] 5.485820 s [racon::Polisher::polish] generating consensus [===========> ] 7.436792 s [racon::Polisher::polish] generating consensus [============> ] 7.582055 s [racon::Polisher::polish] generating consensus [=============> ] 10.494848 s [racon::Polisher::polish] generating consensus [==============> ] 10.573565 s [racon::Polisher::polish] generating consensus [===============> ] 12.466031 s [racon::Polisher::polish] generating consensus [================> ] 14.107496 s [racon::Polisher::polish] generating consensus [=================> ] 14.294258 s [racon::Polisher::polish] generating consensus [==================> ] 15.396653 s [racon::Polisher::polish] generating consensus [===================>] 16.758713 s [racon::Polisher::polish] generating consensus [====================] 19.155223 s [racon::Polisher::] total = 19.785382 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (19848 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000457 s [racon::Polisher::initialize] loaded sequences 0.033020 s [racon::Polisher::initialize] loaded overlaps 0.000302 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.039737 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.061009 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.088556 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.108635 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.136097 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.158987 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.216758 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.246602 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.270208 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.290629 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.318864 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.343169 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.369051 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.381422 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.397688 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.436177 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.449747 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.471498 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.501890 s [racon::Polisher::initialize] aligning overlaps [====================] 0.521473 s [racon::Polisher::initialize] transformed data into windows 0.022427 s [racon::Polisher::polish] generating consensus [=> ] 0.464856 s [racon::Polisher::polish] generating consensus [==> ] 0.874334 s [racon::Polisher::polish] generating consensus [===> ] 1.181083 s [racon::Polisher::polish] generating consensus [====> ] 1.442216 s [racon::Polisher::polish] generating consensus [=====> ] 1.583254 s [racon::Polisher::polish] generating consensus [======> ] 1.906055 s [racon::Polisher::polish] generating consensus [=======> ] 2.051278 s [racon::Polisher::polish] generating consensus [========> ] 2.230963 s [racon::Polisher::polish] generating consensus [=========> ] 2.505967 s [racon::Polisher::polish] generating consensus [==========> ] 2.769657 s [racon::Polisher::polish] generating consensus [===========> ] 3.282282 s [racon::Polisher::polish] generating consensus [============> ] 3.910872 s [racon::Polisher::polish] generating consensus [=============> ] 4.724560 s [racon::Polisher::polish] generating consensus [==============> ] 5.577210 s [racon::Polisher::polish] generating consensus [===============> ] 6.152738 s [racon::Polisher::polish] generating consensus [================> ] 6.567555 s [racon::Polisher::polish] generating consensus [=================> ] 7.069186 s [racon::Polisher::polish] generating consensus [==================> ] 7.371474 s [racon::Polisher::polish] generating consensus [===================>] 7.775969 s [racon::Polisher::polish] generating consensus [====================] 9.231624 s [racon::Polisher::] total = 9.834486 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (9848 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.033057 s [racon::Polisher::initialize] loaded sequences 0.033901 s [racon::Polisher::initialize] loaded overlaps 0.008554 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.045715 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.078724 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.096740 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.118268 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.142229 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.165897 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.207342 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.230523 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.266820 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.295803 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.326984 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.375395 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.409188 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.450495 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.476670 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.519498 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.533762 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.541606 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.563459 s [racon::Polisher::initialize] aligning overlaps [====================] 0.601214 s [racon::Polisher::initialize] transformed data into windows 0.024852 s [racon::Polisher::polish] generating consensus [=> ] 0.295747 s [racon::Polisher::polish] generating consensus [==> ] 0.633810 s [racon::Polisher::polish] generating consensus [===> ] 0.938329 s [racon::Polisher::polish] generating consensus [====> ] 0.938683 s [racon::Polisher::polish] generating consensus [=====> ] 1.124526 s [racon::Polisher::polish] generating consensus [======> ] 1.247800 s [racon::Polisher::polish] generating consensus [=======> ] 1.431549 s [racon::Polisher::polish] generating consensus [========> ] 1.474937 s [racon::Polisher::polish] generating consensus [=========> ] 1.903721 s [racon::Polisher::polish] generating consensus [==========> ] 2.074073 s [racon::Polisher::polish] generating consensus [===========> ] 2.212896 s [racon::Polisher::polish] generating consensus [============> ] 2.262938 s [racon::Polisher::polish] generating consensus [=============> ] 2.432586 s [racon::Polisher::polish] generating consensus [==============> ] 2.432895 s [racon::Polisher::polish] generating consensus [===============> ] 2.819081 s [racon::Polisher::polish] generating consensus [================> ] 2.819274 s [racon::Polisher::polish] generating consensus [=================> ] 3.594278 s [racon::Polisher::polish] generating consensus [==================> ] 3.853658 s [racon::Polisher::polish] generating consensus [===================>] 4.118075 s [racon::Polisher::polish] generating consensus [====================] 4.184213 s [racon::Polisher::] total = 4.886328 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (4899 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.033195 s [racon::Polisher::initialize] loaded sequences 0.033749 s [racon::Polisher::initialize] loaded overlaps 0.007758 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.656052 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.081009 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.464858 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.008776 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.495034 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.826060 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.287087 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.894705 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.443621 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.997507 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.411740 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.016576 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.642530 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.213925 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.903586 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.540646 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.076751 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.764539 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.472891 s [racon::Polisher::initialize] aligning overlaps [====================] 10.955424 s [racon::Polisher::initialize] transformed data into windows 0.587961 s [racon::Polisher::polish] generating consensus [=> ] 15.343972 s [racon::Polisher::polish] generating consensus [==> ] 26.655463 s [racon::Polisher::polish] generating consensus [===> ] 39.249028 s [racon::Polisher::polish] generating consensus [====> ] 49.437024 s [racon::Polisher::polish] generating consensus [=====> ] 60.295828 s [racon::Polisher::polish] generating consensus [======> ] 73.182241 s [racon::Polisher::polish] generating consensus [=======> ] 86.343546 s [racon::Polisher::polish] generating consensus [========> ] 95.820766 s [racon::Polisher::polish] generating consensus [=========> ] 107.858267 s [racon::Polisher::polish] generating consensus [==========> ] 122.355229 s [racon::Polisher::polish] generating consensus [===========> ] 133.972880 s [racon::Polisher::polish] generating consensus [============> ] 147.446872 s [racon::Polisher::polish] generating consensus [=============> ] 159.342921 s [racon::Polisher::polish] generating consensus [==============> ] 172.182563 s [racon::Polisher::polish] generating consensus [===============> ] 190.763781 s [racon::Polisher::polish] generating consensus [================> ] 200.438612 s [racon::Polisher::polish] generating consensus [=================> ] 218.246549 s [racon::Polisher::polish] generating consensus [==================> ] 239.574877 s [racon::Polisher::polish] generating consensus [===================>] 252.981567 s [racon::Polisher::polish] generating consensus [====================] 264.331877 s [racon::Polisher::] total = 275.952926 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (275966 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.015320 s [racon::Polisher::initialize] loaded sequences 0.014904 s [racon::Polisher::initialize] loaded overlaps 0.007882 s [racon::Polisher::initialize] aligning overlaps [=> ] 1.095662 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.558641 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.993514 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.578794 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.076853 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.416422 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.897516 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.530795 s [racon::Polisher::initialize] aligning overlaps [=========> ] 5.085276 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.652812 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.109595 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.731297 s [racon::Polisher::initialize] aligning overlaps [=============> ] 7.367497 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.874389 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.608856 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.269952 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.849336 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.477202 s [racon::Polisher::initialize] aligning overlaps [===================>] 11.100204 s [racon::Polisher::initialize] aligning overlaps [====================] 11.357910 s [racon::Polisher::initialize] transformed data into windows 0.013630 s [racon::Polisher::polish] generating consensus [=> ] 22.095107 s [racon::Polisher::polish] generating consensus [==> ] 39.153172 s [racon::Polisher::polish] generating consensus [===> ] 56.236585 s [racon::Polisher::polish] generating consensus [====> ] 69.404380 s [racon::Polisher::polish] generating consensus [=====> ] 84.318218 s [racon::Polisher::polish] generating consensus [======> ] 101.200624 s [racon::Polisher::polish] generating consensus [=======> ] 119.501761 s [racon::Polisher::polish] generating consensus [========> ] 132.695374 s [racon::Polisher::polish] generating consensus [=========> ] 149.622800 s [racon::Polisher::polish] generating consensus [==========> ] 169.514568 s [racon::Polisher::polish] generating consensus [===========> ] 186.431553 s [racon::Polisher::polish] generating consensus [============> ] 204.331699 s [racon::Polisher::polish] generating consensus [=============> ] 222.100149 s [racon::Polisher::polish] generating consensus [==============> ] 239.848915 s [racon::Polisher::polish] generating consensus [===============> ] 257.526803 s [racon::Polisher::polish] generating consensus [================> ] 266.961900 s [racon::Polisher::polish] generating consensus [=================> ] 289.257204 s [racon::Polisher::polish] generating consensus [==================> ] 309.813799 s [racon::Polisher::polish] generating consensus [===================>] 328.372449 s [racon::Polisher::polish] generating consensus [====================] 344.058094 s [racon::Polisher::] total = 355.470172 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (355491 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.037881 s [racon::Polisher::initialize] loaded sequences 0.038472 s [racon::Polisher::initialize] loaded overlaps 0.008377 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.658009 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.112913 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.499353 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.046320 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.535633 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.868806 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.332145 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.942702 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.493290 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.049023 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.465236 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.072258 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.705199 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.277708 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.974004 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.612588 s [racon::Polisher::initialize] aligning overlaps [=================> ] 9.154767 s [racon::Polisher::initialize] aligning overlaps [==================> ] 9.846920 s [racon::Polisher::initialize] aligning overlaps [===================>] 10.561690 s [racon::Polisher::initialize] aligning overlaps [====================] 11.028871 s [racon::Polisher::initialize] transformed data into windows 0.587338 s [racon::Polisher::polish] generating consensus [=> ] 15.729899 s [racon::Polisher::polish] generating consensus [==> ] 26.910926 s [racon::Polisher::polish] generating consensus [===> ] 39.279267 s [racon::Polisher::polish] generating consensus [====> ] 49.661463 s [racon::Polisher::polish] generating consensus [=====> ] 60.397575 s [racon::Polisher::polish] generating consensus [======> ] 73.283322 s [racon::Polisher::polish] generating consensus [=======> ] 86.514872 s [racon::Polisher::polish] generating consensus [========> ] 96.023533 s [racon::Polisher::polish] generating consensus [=========> ] 108.095893 s [racon::Polisher::polish] generating consensus [==========> ] 122.505541 s [racon::Polisher::polish] generating consensus [===========> ] 134.174011 s [racon::Polisher::polish] generating consensus [============> ] 147.672111 s [racon::Polisher::polish] generating consensus [=============> ] 159.482307 s [racon::Polisher::polish] generating consensus [==============> ] 171.947043 s [racon::Polisher::polish] generating consensus [===============> ] 185.632179 s [racon::Polisher::polish] generating consensus [================> ] 193.036625 s [racon::Polisher::polish] generating consensus [=================> ] 207.800904 s [racon::Polisher::polish] generating consensus [==================> ] 221.669594 s [racon::Polisher::polish] generating consensus [===================>] 234.922426 s [racon::Polisher::polish] generating consensus [====================] 244.875958 s [racon::Polisher::] total = 256.578661 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (256597 ms) [----------] 10 tests from RaconPolishingTest (975868 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (975883 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j21 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-i686-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_i386.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_i386.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_i386.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/54667/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/54667/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/54667 and its subdirectories I: Current time: Sun Apr 12 20:05:56 +14 2026 I: pbuilder-time-stamp: 1775973956