I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 9 02:22:46 +14 2026 I: pbuilder-time-stamp: 1767874966 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [shapeit4_4.2.2+dfsg-1.dsc] I: copying [./shapeit4_4.2.2+dfsg.orig.tar.xz] I: copying [./shapeit4_4.2.2+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Sep 17 12:28:12 2021 gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./shapeit4_4.2.2+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting shapeit4 in shapeit4-4.2.2+dfsg dpkg-source: info: unpacking shapeit4_4.2.2+dfsg.orig.tar.xz dpkg-source: info: unpacking shapeit4_4.2.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_shared_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/117361/tmp/hooks/D01_modify_environment starting debug: Running on ionos6-i386. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 8 12:22 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/117361/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/117361/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="i686-pc-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=i386 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=21 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=i686 HOST_ARCH=i386 IFS=' ' INVOCATION_ID=abb5f75cbe0542a894e801c7a84b604d LANG=C LANGUAGE=de_CH:de LC_ALL=C LD_LIBRARY_PATH=/usr/lib/libeatmydata LD_PRELOAD=libeatmydata.so MACHTYPE=i686-pc-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=117361 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6FNpX6kz/pbuilderrc_nJUc --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6FNpX6kz/b2 --logfile b2/build.log shapeit4_4.2.2+dfsg-1.dsc' SUDO_GID=112 SUDO_UID=107 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://213.165.73.152:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.119-1 (2024-11-22) x86_64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/117361/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-iostreams-dev, libboost-program-options-dev, libbz2-dev, libhts-dev, libssl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19955 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 61.0 MB of archives. After unpacking 352 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB] Get: 4 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB] Get: 5 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.22.5-2 [201 kB] Get: 6 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-5 [1196 kB] Get: 8 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.2-11 [95.6 kB] Get: 9 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB] Get: 10 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB] Get: 11 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-4 [293 kB] Get: 12 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main i386 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main i386 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2~rc1-2 [24.0 kB] Get: 17 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.2~rc1-2 [55.9 kB] Get: 18 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.20 [89.7 kB] Get: 19 http://deb.debian.org/debian trixie/main i386 libtool all 2.4.7-8 [517 kB] Get: 20 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 23 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 24 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB] Get: 25 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB] Get: 26 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-5+b1 [9583 kB] Get: 27 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b1 [734 kB] Get: 28 http://deb.debian.org/debian trixie/main i386 gettext i386 0.22.5-2 [1631 kB] Get: 29 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main i386 debhelper all 13.20 [915 kB] Get: 32 http://deb.debian.org/debian trixie/main i386 icu-devtools i386 72.1-5+b1 [218 kB] Get: 33 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-3 [34.9 kB] Get: 34 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-3 [83.6 kB] Get: 35 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B] Get: 36 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-3 [350 kB] Get: 37 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-3 [146 kB] Get: 38 http://deb.debian.org/debian trixie/main i386 libgssrpc4t64 i386 1.21.3-3 [63.1 kB] Get: 39 http://deb.debian.org/debian trixie/main i386 libkadm5clnt-mit12 i386 1.21.3-3 [43.2 kB] Get: 40 http://deb.debian.org/debian trixie/main i386 libkdb5-10t64 i386 1.21.3-3 [45.1 kB] Get: 41 http://deb.debian.org/debian trixie/main i386 libkadm5srv-mit12 i386 1.21.3-3 [57.0 kB] Get: 42 http://deb.debian.org/debian trixie/main i386 krb5-multidev i386 1.21.3-3 [126 kB] Get: 43 http://deb.debian.org/debian trixie/main i386 libboost1.83-dev i386 1.83.0-3.2+b2 [10.6 MB] Get: 44 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83.0 i386 1.83.0-3.2+b2 [329 kB] Get: 45 http://deb.debian.org/debian trixie/main i386 libicu-dev i386 72.1-5+b1 [10.6 MB] Get: 46 http://deb.debian.org/debian trixie/main i386 libboost-regex1.83-dev i386 1.83.0-3.2+b2 [347 kB] Get: 47 http://deb.debian.org/debian trixie/main i386 libboost-iostreams1.83-dev i386 1.83.0-3.2+b2 [264 kB] Get: 48 http://deb.debian.org/debian trixie/main i386 libboost-iostreams-dev i386 1.83.0.2+b2 [3588 B] Get: 49 http://deb.debian.org/debian trixie/main i386 libboost-program-options1.83.0 i386 1.83.0-3.2+b2 [361 kB] Get: 50 http://deb.debian.org/debian trixie/main i386 libboost-program-options1.83-dev i386 1.83.0-3.2+b2 [391 kB] Get: 51 http://deb.debian.org/debian trixie/main i386 libboost-program-options-dev i386 1.83.0.2+b2 [3616 B] Get: 52 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b6 [308 kB] Get: 53 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b6 [313 kB] Get: 54 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB] Get: 55 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8 [20.6 kB] Get: 56 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8 [61.0 kB] Get: 57 http://deb.debian.org/debian trixie/main i386 libldap-2.5-0 i386 2.5.18+dfsg-3+b1 [200 kB] Get: 58 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB] Get: 59 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB] Get: 60 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB] Get: 61 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB] Get: 62 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB] Get: 63 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB] Get: 64 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB] Get: 65 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.11.0-1 [403 kB] Get: 66 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB] Get: 67 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1 [632 kB] Get: 68 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.8-2 [447 kB] Get: 69 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.8-2 [447 kB] Get: 70 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB] Get: 71 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-2+b1 [208 kB] Get: 72 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.19.0-3+b3 [102 kB] Get: 73 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB] Get: 74 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB] Get: 75 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10-1+b1 [1334 kB] Get: 76 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.8-2 [1453 kB] Get: 77 http://deb.debian.org/debian trixie/main i386 libkrb5-dev i386 1.21.3-3 [15.7 kB] Get: 78 http://deb.debian.org/debian trixie/main i386 libldap-dev i386 2.5.18+dfsg-3+b1 [324 kB] Get: 79 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB] Get: 80 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB] Get: 81 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB] Get: 82 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB] Get: 83 http://deb.debian.org/debian trixie/main i386 libnghttp3-dev i386 1.6.0-2 [101 kB] Get: 84 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls-dev i386 1.9.1-1 [24.0 kB] Get: 85 http://deb.debian.org/debian trixie/main i386 libngtcp2-dev i386 1.9.1-1 [202 kB] Get: 86 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB] Get: 87 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Get: 88 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB] Get: 89 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.3.2-2 [2790 kB] Get: 90 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB] Get: 91 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-1+b1 [355 kB] Get: 92 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.11.0-1 [533 kB] Get: 93 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.22-1 [48.1 kB] Get: 94 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.22-1 [57.2 kB] Get: 95 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-1 [70.8 kB] Get: 96 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.20+ds-2 [500 kB] Get: 97 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.3-1+b1 [328 kB] Get: 98 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.20+ds-2 [1693 kB] Fetched 61.0 MB in 1s (80.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19955 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_i386.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:i386. 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Setting up libboost-iostreams-dev:i386 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:i386 (1.21.3-3) ... Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:i386 (1.20+ds-2) ... Setting up libkadm5clnt-mit12:i386 (1.21.3-3) ... Setting up libkdb5-10t64:i386 (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:i386 (1.21.3-3) ... Setting up krb5-multidev:i386 (1.21.3-3) ... Setting up libkrb5-dev:i386 (1.21.3-3) ... Setting up libcurl4-gnutls-dev:i386 (8.11.0-1) ... Setting up libhts-dev:i386 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/117361/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/117361/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/shapeit4-4.2.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../shapeit4_4.2.2+dfsg-1_source.changes dpkg-buildpackage: info: source package shapeit4 dpkg-buildpackage: info: source version 4.2.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j21 clean make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' rm -f obj/*.o bin/shapeit4.2 make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j21 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/variant_map.cpp -o obj/variant_map.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/genotype_set.cpp -o obj/genotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/bitmatrix.cpp -o obj/bitmatrix.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/containers/haplotype_set.cpp -o obj/haplotype_set.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/genotype_reader1.cpp -o obj/genotype_reader1.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/genotype_reader2.cpp -o obj/genotype_reader2.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/gmap_reader.cpp -o obj/gmap_reader.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/graph_writer.cpp -o obj/graph_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/io/haplotype_writer.cpp -o obj/haplotype_writer.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/models/haplotype_segment_double.cpp -o obj/haplotype_segment_double.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/models/haplotype_segment_single.cpp -o obj/haplotype_segment_single.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/hmm_parameters.cpp -o obj/hmm_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/variant.cpp -o obj/variant.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/compute_job.cpp -o obj/compute_job.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_sweep.cpp -o obj/genotype_sweep.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_mask.cpp -o obj/genotype_mask.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_build.cpp -o obj/genotype_build.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_managment.cpp -o obj/genotype_managment.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/objects/genotype/genotype_prune.cpp -o obj/genotype_prune.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_finalise.cpp -o obj/phaser_finalise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_parameters.cpp -o obj/phaser_parameters.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_double.h:26, from src/models/haplotype_segment_double.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/objects/compute_job.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/models/haplotype_segment_single.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/io/haplotype_writer.h:28, from src/io/haplotype_writer.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/io/genotype_reader.h:28, from src/io/genotype_reader1.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/io/genotype_reader.h:28, from src/io/genotype_reader2.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_finalise.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/bitmatrix.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_parameters.cpp:23: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/containers/haplotype_set.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_initialise.cpp -o obj/phaser_initialise.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_algorithm.cpp -o obj/phaser_algorithm.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/phaser/phaser_management.cpp -o obj/phaser_management.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/modules/pbwt_solver.cpp -o obj/pbwt_solver.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/modules/builder.cpp -o obj/builder.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include g++ -std=c++11 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/shapeit4-4.2.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c src/main.cpp -o obj/main.o -Isrc -I/build/reproducible-path/shapeit4-4.2.2+dfsg/debian/.debhelper/generated/_source/home/Tools/htslib-1.11 -I/usr/include In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_algorithm.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_initialise.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/phaser/phaser_management.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/modules/pbwt_solver.h:26, from src/modules/pbwt_solver.cpp:22: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from src/containers/haplotype_set.h:27, from src/objects/compute_job.h:27, from src/models/haplotype_segment_single.h:26, from src/phaser/phaser_header.h:29, from src/main.cpp:23: src/containers/bitmatrix.h: In function 'unsigned int abracadabra(const unsigned int&, const unsigned int&)': src/containers/bitmatrix.h:28:116: warning: right shift count >= width of type [-Wshift-count-overflow] 28 | return static_cast((static_cast(i1) * static_cast(i2)) >> 32); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ g++ -std=c++11 -Wl,-z,relro -Wl,-z,now -O3 obj/variant_map.o obj/genotype_set.o obj/bitmatrix.o obj/haplotype_set.o obj/genotype_reader1.o obj/genotype_reader2.o obj/gmap_reader.o obj/graph_writer.o obj/haplotype_writer.o obj/haplotype_segment_double.o obj/haplotype_segment_single.o obj/hmm_parameters.o obj/variant.o obj/compute_job.o obj/genotype_sweep.o obj/genotype_mask.o obj/genotype_build.o obj/genotype_managment.o obj/genotype_prune.o obj/phaser_finalise.o obj/phaser_parameters.o obj/phaser_initialise.o obj/phaser_algorithm.o obj/phaser_management.o obj/pbwt_solver.o obj/builder.o obj/main.o -lhts -lboost_iostreams -lboost_program_options -o bin/shapeit4.2 -lz -lbz2 -lm -lpthread -llzma -lcurl -lssl -lcrypto make[1]: Leaving directory '/build/reproducible-path/shapeit4-4.2.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'shapeit4-example' in '../shapeit4-example_4.2.2+dfsg-1_all.deb'. dpkg-deb: building package 'shapeit4-dbgsym' in '../shapeit4-dbgsym_4.2.2+dfsg-1_i386.deb'. dpkg-deb: building package 'shapeit4' in '../shapeit4_4.2.2+dfsg-1_i386.deb'. dpkg-genbuildinfo --build=binary -O../shapeit4_4.2.2+dfsg-1_i386.buildinfo dpkg-genchanges --build=binary -O../shapeit4_4.2.2+dfsg-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/117361/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/117361/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/117361 and its subdirectories I: Current time: Fri Jan 9 02:24:17 +14 2026 I: pbuilder-time-stamp: 1767875057