I: pbuilder: network access will be disabled during build
I: Current time: Sat Mar 1 04:42:31 -12 2025
I: pbuilder-time-stamp: 1740847351
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: using eatmydata during job
I: Copying source file
I: copying [stringtie_2.2.1+ds-3.dsc]
I: copying [./stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz]
I: copying [./stringtie_2.2.1+ds.orig.tar.xz]
I: copying [./stringtie_2.2.1+ds-3.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./stringtie_2.2.1+ds-3.dsc: unsupported subcommand
dpkg-source: info: extracting stringtie in stringtie-2.2.1+ds
dpkg-source: info: unpacking stringtie_2.2.1+ds.orig.tar.xz
dpkg-source: info: unpacking stringtie_2.2.1+ds.orig-debian-tests-data.tar.xz
dpkg-source: info: unpacking stringtie_2.2.1+ds-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Makefile.patch
dpkg-source: info: applying hardening.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/25986/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build/reproducible-path'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='i386'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=11 '
DISTRIBUTION='trixie'
HOME='/root'
HOST_ARCH='i386'
IFS='
'
INVOCATION_ID='212628f9473a4608be9da5c0ee4dec24'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
LD_LIBRARY_PATH='/usr/lib/libeatmydata'
LD_PRELOAD='libeatmydata.so'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='25986'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.4FW0rS32/pbuilderrc_Fcnt --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.4FW0rS32/b1 --logfile b1/build.log stringtie_2.2.1+ds-3.dsc'
SUDO_GID='112'
SUDO_UID='107'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
_='/usr/bin/systemd-run'
http_proxy='http://46.16.76.132:3128'
I: uname -a
Linux ionos12-i386 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/25986/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), libbam-dev, libhts-dev, libbz2-dev, help2man
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19789 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on libbam-dev; however:
Package libbam-dev is not installed.
pbuilder-satisfydepends-dummy depends on libhts-dev; however:
Package libhts-dev is not installed.
pbuilder-satisfydepends-dummy depends on libbz2-dev; however:
Package libbz2-dev is not installed.
pbuilder-satisfydepends-dummy depends on help2man; however:
Package help2man is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbam-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget
0 packages upgraded, 97 newly installed, 0 to remove and 0 not upgraded.
Need to get 41.1 MB of archives. After unpacking 139 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian trixie/main i386 liblocale-gettext-perl i386 1.07-7+b1 [15.4 kB]
Get: 2 http://deb.debian.org/debian trixie/main i386 sensible-utils all 0.0.24 [24.8 kB]
Get: 3 http://deb.debian.org/debian trixie/main i386 libmagic-mgc i386 1:5.45-3+b1 [314 kB]
Get: 4 http://deb.debian.org/debian trixie/main i386 libmagic1t64 i386 1:5.45-3+b1 [115 kB]
Get: 5 http://deb.debian.org/debian trixie/main i386 file i386 1:5.45-3+b1 [43.2 kB]
Get: 6 http://deb.debian.org/debian trixie/main i386 gettext-base i386 0.23.1-1 [245 kB]
Get: 7 http://deb.debian.org/debian trixie/main i386 libuchardet0 i386 0.0.8-1+b2 [69.2 kB]
Get: 8 http://deb.debian.org/debian trixie/main i386 groff-base i386 1.23.0-7 [1199 kB]
Get: 9 http://deb.debian.org/debian trixie/main i386 bsdextrautils i386 2.40.4-5 [96.5 kB]
Get: 10 http://deb.debian.org/debian trixie/main i386 libpipeline1 i386 1.5.8-1 [41.2 kB]
Get: 11 http://deb.debian.org/debian trixie/main i386 man-db i386 2.13.0-1 [1428 kB]
Get: 12 http://deb.debian.org/debian trixie/main i386 m4 i386 1.4.19-5 [301 kB]
Get: 13 http://deb.debian.org/debian trixie/main i386 autoconf all 2.72-3 [493 kB]
Get: 14 http://deb.debian.org/debian trixie/main i386 autotools-dev all 20220109.1 [51.6 kB]
Get: 15 http://deb.debian.org/debian trixie/main i386 automake all 1:1.17-3 [862 kB]
Get: 16 http://deb.debian.org/debian trixie/main i386 autopoint all 0.23.1-1 [770 kB]
Get: 17 http://deb.debian.org/debian trixie/main i386 libcom-err2 i386 1.47.2-1 [24.3 kB]
Get: 18 http://deb.debian.org/debian trixie/main i386 comerr-dev i386 2.1-1.47.2-1 [56.2 kB]
Get: 19 http://deb.debian.org/debian trixie/main i386 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 20 http://deb.debian.org/debian trixie/main i386 libtool all 2.5.4-3 [539 kB]
Get: 21 http://deb.debian.org/debian trixie/main i386 dh-autoreconf all 20 [17.1 kB]
Get: 22 http://deb.debian.org/debian trixie/main i386 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 23 http://deb.debian.org/debian trixie/main i386 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 24 http://deb.debian.org/debian trixie/main i386 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 25 http://deb.debian.org/debian trixie/main i386 libelf1t64 i386 0.192-4 [195 kB]
Get: 26 http://deb.debian.org/debian trixie/main i386 dwz i386 0.15-1+b1 [116 kB]
Get: 27 http://deb.debian.org/debian trixie/main i386 libunistring5 i386 1.3-1 [458 kB]
Get: 28 http://deb.debian.org/debian trixie/main i386 libicu72 i386 72.1-6 [9582 kB]
Get: 29 http://deb.debian.org/debian trixie/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.2+b2 [734 kB]
Get: 30 http://deb.debian.org/debian trixie/main i386 gettext i386 0.23.1-1 [1714 kB]
Get: 31 http://deb.debian.org/debian trixie/main i386 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 32 http://deb.debian.org/debian trixie/main i386 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 33 http://deb.debian.org/debian trixie/main i386 debhelper all 13.24.1 [920 kB]
Get: 34 http://deb.debian.org/debian trixie/main i386 help2man i386 1.49.3 [198 kB]
Get: 35 http://deb.debian.org/debian trixie/main i386 libkrb5support0 i386 1.21.3-4 [35.0 kB]
Get: 36 http://deb.debian.org/debian trixie/main i386 libk5crypto3 i386 1.21.3-4 [83.7 kB]
Get: 37 http://deb.debian.org/debian trixie/main i386 libkeyutils1 i386 1.6.3-4 [9600 B]
Get: 38 http://deb.debian.org/debian trixie/main i386 libkrb5-3 i386 1.21.3-4 [354 kB]
Get: 39 http://deb.debian.org/debian trixie/main i386 libgssapi-krb5-2 i386 1.21.3-4 [149 kB]
Get: 40 http://deb.debian.org/debian trixie/main i386 libgssrpc4t64 i386 1.21.3-4 [63.4 kB]
Get: 41 http://deb.debian.org/debian trixie/main i386 libkadm5clnt-mit12 i386 1.21.3-4 [44.1 kB]
Get: 42 http://deb.debian.org/debian trixie/main i386 libkdb5-10t64 i386 1.21.3-4 [45.3 kB]
Get: 43 http://deb.debian.org/debian trixie/main i386 libkadm5srv-mit12 i386 1.21.3-4 [57.7 kB]
Get: 44 http://deb.debian.org/debian trixie/main i386 krb5-multidev i386 1.21.3-4 [126 kB]
Get: 45 http://deb.debian.org/debian trixie/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB]
Get: 46 http://deb.debian.org/debian trixie/main i386 libbam-dev i386 0.1.19+dfsg-6 [130 kB]
Get: 47 http://deb.debian.org/debian trixie/main i386 libbrotli1 i386 1.1.0-2+b7 [299 kB]
Get: 48 http://deb.debian.org/debian trixie/main i386 libbrotli-dev i386 1.1.0-2+b7 [313 kB]
Get: 49 http://deb.debian.org/debian trixie/main i386 libbz2-dev i386 1.0.8-6 [32.1 kB]
Get: 50 http://deb.debian.org/debian trixie/main i386 libidn2-0 i386 2.3.7-2+b1 [130 kB]
Get: 51 http://deb.debian.org/debian trixie/main i386 libffi8 i386 3.4.7-1 [21.4 kB]
Get: 52 http://deb.debian.org/debian trixie/main i386 libp11-kit0 i386 0.25.5-3 [423 kB]
Get: 53 http://deb.debian.org/debian trixie/main i386 libtasn1-6 i386 4.20.0-2 [51.6 kB]
Get: 54 http://deb.debian.org/debian trixie/main i386 libgnutls30t64 i386 3.8.9-2 [1462 kB]
Get: 55 http://deb.debian.org/debian trixie/main i386 libsasl2-modules-db i386 2.1.28+dfsg1-8+b1 [20.9 kB]
Get: 56 http://deb.debian.org/debian trixie/main i386 libsasl2-2 i386 2.1.28+dfsg1-8+b1 [61.3 kB]
Get: 57 http://deb.debian.org/debian trixie/main i386 libldap2 i386 2.6.9+dfsg-1 [205 kB]
Get: 58 http://deb.debian.org/debian trixie/main i386 libnghttp2-14 i386 1.64.0-1 [82.4 kB]
Get: 59 http://deb.debian.org/debian trixie/main i386 libnghttp3-9 i386 1.6.0-2 [75.9 kB]
Get: 60 http://deb.debian.org/debian trixie/main i386 libngtcp2-16 i386 1.9.1-1 [151 kB]
Get: 61 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls8 i386 1.9.1-1 [19.1 kB]
Get: 62 http://deb.debian.org/debian trixie/main i386 libpsl5t64 i386 0.21.2-1.1+b1 [57.7 kB]
Get: 63 http://deb.debian.org/debian trixie/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b5 [62.4 kB]
Get: 64 http://deb.debian.org/debian trixie/main i386 libssh2-1t64 i386 1.11.1-1 [256 kB]
Get: 65 http://deb.debian.org/debian trixie/main i386 libcurl3t64-gnutls i386 8.12.1-2 [411 kB]
Get: 66 http://deb.debian.org/debian trixie/main i386 libevent-2.1-7t64 i386 2.1.12-stable-10+b1 [195 kB]
Get: 67 http://deb.debian.org/debian trixie/main i386 libunbound8 i386 1.22.0-1+b1 [633 kB]
Get: 68 http://deb.debian.org/debian trixie/main i386 libgnutls-dane0t64 i386 3.8.9-2 [453 kB]
Get: 69 http://deb.debian.org/debian trixie/main i386 libgnutls-openssl27t64 i386 3.8.9-2 [453 kB]
Get: 70 http://deb.debian.org/debian trixie/main i386 libidn2-dev i386 2.3.7-2+b1 [126 kB]
Get: 71 http://deb.debian.org/debian trixie/main i386 libp11-kit-dev i386 0.25.5-3 [208 kB]
Get: 72 http://deb.debian.org/debian trixie/main i386 libtasn1-6-dev i386 4.20.0-2 [103 kB]
Get: 73 http://deb.debian.org/debian trixie/main i386 libgmpxx4ldbl i386 2:6.3.0+dfsg-3 [329 kB]
Get: 74 http://deb.debian.org/debian trixie/main i386 libgmp-dev i386 2:6.3.0+dfsg-3 [661 kB]
Get: 75 http://deb.debian.org/debian trixie/main i386 nettle-dev i386 3.10.1-1 [1335 kB]
Get: 76 http://deb.debian.org/debian trixie/main i386 libgnutls28-dev i386 3.8.9-2 [1464 kB]
Get: 77 http://deb.debian.org/debian trixie/main i386 libkrb5-dev i386 1.21.3-4 [15.9 kB]
Get: 78 http://deb.debian.org/debian trixie/main i386 libldap-dev i386 2.6.9+dfsg-1 [328 kB]
Get: 79 http://deb.debian.org/debian trixie/main i386 libpkgconf3 i386 1.8.1-4 [38.4 kB]
Get: 80 http://deb.debian.org/debian trixie/main i386 pkgconf-bin i386 1.8.1-4 [30.6 kB]
Get: 81 http://deb.debian.org/debian trixie/main i386 pkgconf i386 1.8.1-4 [26.2 kB]
Get: 82 http://deb.debian.org/debian trixie/main i386 libnghttp2-dev i386 1.64.0-1 [123 kB]
Get: 83 http://deb.debian.org/debian trixie/main i386 libnghttp3-dev i386 1.6.0-2 [101 kB]
Get: 84 http://deb.debian.org/debian trixie/main i386 libngtcp2-crypto-gnutls-dev i386 1.9.1-1 [24.0 kB]
Get: 85 http://deb.debian.org/debian trixie/main i386 libngtcp2-dev i386 1.9.1-1 [202 kB]
Get: 86 http://deb.debian.org/debian trixie/main i386 libpsl-dev i386 0.21.2-1.1+b1 [78.4 kB]
Get: 87 http://deb.debian.org/debian trixie/main i386 librtmp-dev i386 2.4+20151223.gitfa8646d.1-2+b5 [72.3 kB]
Get: 88 http://deb.debian.org/debian trixie/main i386 libssl-dev i386 3.4.1-1 [2837 kB]
Get: 89 http://deb.debian.org/debian trixie/main i386 libssh2-1-dev i386 1.11.1-1 [407 kB]
Get: 90 http://deb.debian.org/debian trixie/main i386 libzstd-dev i386 1.5.6+dfsg-2 [354 kB]
Get: 91 http://deb.debian.org/debian trixie/main i386 libcurl4-gnutls-dev i386 8.12.1-2 [542 kB]
Get: 92 http://deb.debian.org/debian trixie/main i386 libdeflate0 i386 1.23-1+b1 [48.4 kB]
Get: 93 http://deb.debian.org/debian trixie/main i386 libdeflate-dev i386 1.23-1+b1 [57.5 kB]
Get: 94 http://deb.debian.org/debian trixie/main i386 libhtscodecs2 i386 1.6.1-2 [70.9 kB]
Get: 95 http://deb.debian.org/debian trixie/main i386 libhts3t64 i386 1.21+ds-1 [506 kB]
Get: 96 http://deb.debian.org/debian trixie/main i386 liblzma-dev i386 5.6.3-1+b1 [328 kB]
Get: 97 http://deb.debian.org/debian trixie/main i386 libhts-dev i386 1.21+ds-1 [1725 kB]
Fetched 41.1 MB in 1s (49.6 MB/s)
Preconfiguring packages ...
Selecting previously unselected package liblocale-gettext-perl.
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(Reading database ... 19789 files and directories currently installed.)
Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_i386.deb ...
Unpacking liblocale-gettext-perl (1.07-7+b1) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
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Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_i386.deb ...
Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:i386.
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Unpacking libmagic1t64:i386 (1:5.45-3+b1) ...
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Unpacking file (1:5.45-3+b1) ...
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Preparing to unpack .../05-gettext-base_0.23.1-1_i386.deb ...
Unpacking gettext-base (0.23.1-1) ...
Selecting previously unselected package libuchardet0:i386.
Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_i386.deb ...
Unpacking libuchardet0:i386 (0.0.8-1+b2) ...
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Preparing to unpack .../07-groff-base_1.23.0-7_i386.deb ...
Unpacking groff-base (1.23.0-7) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../08-bsdextrautils_2.40.4-5_i386.deb ...
Unpacking bsdextrautils (2.40.4-5) ...
Selecting previously unselected package libpipeline1:i386.
Preparing to unpack .../09-libpipeline1_1.5.8-1_i386.deb ...
Unpacking libpipeline1:i386 (1.5.8-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../10-man-db_2.13.0-1_i386.deb ...
Unpacking man-db (2.13.0-1) ...
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Preparing to unpack .../11-m4_1.4.19-5_i386.deb ...
Unpacking m4 (1.4.19-5) ...
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Setting up libgnutls28-dev:i386 (3.8.9-2) ...
Setting up libkdb5-10t64:i386 (1.21.3-4) ...
Setting up libcurl3t64-gnutls:i386 (8.12.1-2) ...
Setting up debhelper (13.24.1) ...
Setting up libngtcp2-crypto-gnutls-dev:i386 (1.9.1-1) ...
Setting up librtmp-dev:i386 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libkadm5srv-mit12:i386 (1.21.3-4) ...
Setting up libhts3t64:i386 (1.21+ds-1) ...
Setting up krb5-multidev:i386 (1.21.3-4) ...
Setting up libkrb5-dev:i386 (1.21.3-4) ...
Setting up libcurl4-gnutls-dev:i386 (8.12.1-2) ...
Setting up libhts-dev:i386 (1.21+ds-1) ...
Processing triggers for libc-bin (2.40-7) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/reproducible-path/stringtie-2.2.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../stringtie_2.2.1+ds-3_source.changes
dpkg-buildpackage: info: source package stringtie
dpkg-buildpackage: info: source version 2.2.1+ds-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture i386
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/stringtie-2.2.1+ds'
dh_auto_clean
make -j11 clean
make[2]: Entering directory '/build/reproducible-path/stringtie-2.2.1+ds'
rm -f stringtie stringtie.o* ./gclib/GBase.o ./gclib/GArgs.o ./gclib/GStr.o ./gclib/GSam.o ./gclib/gdna.o ./gclib/codons.o ./gclib/GFastaIndex.o ./gclib/GFaSeqGet.o ./gclib/gff.o ./gclib/GThreads.o rlink.o tablemaker.o tmerge.o
rm -f core.*
make[2]: Leaving directory '/build/reproducible-path/stringtie-2.2.1+ds'
rm -fr test_data
rm -f SuperReads_RNA/global-1/SuperReadsR/all_tests
make[1]: Leaving directory '/build/reproducible-path/stringtie-2.2.1+ds'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/stringtie.substvars debian/files
rm -fr -- debian/stringtie/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \)
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
dh_auto_configure
debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/stringtie-2.2.1+ds'
dh_auto_build -- 'LINKER=$(CXX)'
make -j11 "INSTALL=install --strip-program=true" LINKER=\$\(CXX\)
make[2]: Entering directory '/build/reproducible-path/stringtie-2.2.1+ds'
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GBase.cpp -o gclib/GBase.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GArgs.cpp -o gclib/GArgs.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GStr.cpp -o gclib/GStr.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GSam.cpp -o gclib/GSam.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/gdna.cpp -o gclib/gdna.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/codons.cpp -o gclib/codons.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GFastaIndex.cpp -o gclib/GFastaIndex.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GFaSeqGet.cpp -o gclib/GFaSeqGet.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/gff.cpp -o gclib/gff.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GThreads.cpp -o gclib/GThreads.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c rlink.cpp -o rlink.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c tablemaker.cpp -o tablemaker.o
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c tmerge.cpp -o tmerge.o
In file included from gclib/GSam.cpp:1:
gclib/GSam.h:32:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
32 | struct {
| ^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/stringtie-2.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++11 -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c stringtie.cpp -o stringtie.o
In file included from gclib/gff.cpp:1:
gclib/gff.h:242:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
242 | struct {
| ^
gclib/gff.h:245:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
245 | struct {
| ^
gclib/gff.h:343:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
343 | struct {
| ^
gclib/gff.h:706:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
706 | struct {
| ^
In file included from gclib/GStr.h:5,
from gclib/GStr.cpp:2:
gclib/GStr.cpp: In static member function 'static GStr::Data* GStr::new_data(uint, uint)':
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
gclib/gff.h:1165:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
1165 | struct {
| ^
gclib/GStr.cpp: In static member function 'static GStr::Data* GStr::new_data(const char*, uint)':
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:39:9: note: in expansion of macro 'GMALLOC'
39 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp:38:15: note: 'data' was declared here
38 | Data* data;
| ^~~~
gclib/gff.cpp: In constructor 'GffLine::GffLine(GffReader*, const char*)':
gclib/gff.cpp:426:19: warning: unknown escape sequence: '\%'
426 | GMessage("Warning: unexpected tab character in last column, line truncated:\n\%s\n",l);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'void GStr::make_unique()' at gclib/GStr.cpp:91:30:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'void GStr::make_unique()':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::cut(int, int)' at gclib/GStr.cpp:890:26:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In function 'GStr& GStr::cut(int, int)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In file included from rlink.h:5,
from rlink.cpp:1:
./gclib/gff.h:242:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
242 | struct {
| ^
./gclib/gff.h:245:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
245 | struct {
| ^
./gclib/gff.h:343:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
343 | struct {
| ^
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'void GStr::make_unique()' at gclib/GStr.cpp:91:30,
inlined from 'char* GStr::detach()' at gclib/GStr.cpp:130:13:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'char* GStr::detach()':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
./gclib/gff.h:706:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
706 | struct {
| ^
./gclib/gff.h:1165:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
1165 | struct {
| ^
In static member function 'static GStr::Data* GStr::new_data(const char*, uint)',
inlined from 'GStr::GStr(const char*, uint)' at gclib/GStr.cpp:157:19:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:39:9: note: in expansion of macro 'GMALLOC'
39 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In constructor 'GStr::GStr(const char*, uint)':
gclib/GStr.cpp:38:15: note: 'data' was declared here
38 | Data* data;
| ^~~~
In file included from rlink.h:6:
./gclib/GSam.h:32:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
32 | struct {
| ^
In file included from rlink.h:5,
from tablemaker.cpp:2:
./gclib/gff.h:242:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
242 | struct {
| ^
./gclib/gff.h:245:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
245 | struct {
| ^
./gclib/gff.h:343:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
343 | struct {
| ^
./gclib/gff.h:706:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
706 | struct {
| ^
./gclib/gff.h:1165:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
1165 | struct {
| ^
In file included from rlink.h:6:
./gclib/GSam.h:32:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
32 | struct {
| ^
In file included from rlink.h:5,
from tmerge.h:5,
from tmerge.cpp:1:
./gclib/gff.h:242:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
242 | struct {
| ^
./gclib/gff.h:245:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
245 | struct {
| ^
./gclib/gff.h:343:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
343 | struct {
| ^
./gclib/gff.h:706:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
706 | struct {
| ^
tablemaker.cpp: In function 'void rc_update_exons(RC_BundleData&)':
tablemaker.cpp:205:29: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
205 | bind2nd( minus<double>(), avg));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_function.h:1435,
from /usr/include/c++/14/functional:49,
from ./gclib/khashl.hh:25,
from ./gclib/GHashMap.hh:8,
from ./gclib/GFastaIndex.h:11,
from ./gclib/GFaSeqGet.h:3,
from ./gclib/gff.h:9:
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
tablemaker.cpp:212:29: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = minus<double>; _Tp = double]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations]
212 | bind2nd( minus<double>(), mavg));
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/14/backward/binders.h:172:5: note: declared here
172 | bind2nd(const _Operation& __fn, const _Tp& __x)
| ^~~~~~~
./gclib/gff.h:1165:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
1165 | struct {
| ^
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::trim(char)' at gclib/GStr.cpp:463:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::trim(char)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In file included from rlink.h:5,
from stringtie.cpp:2:
./gclib/gff.h:242:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
242 | struct {
| ^
./gclib/gff.h:245:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
245 | struct {
| ^
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::trim(const char*)' at gclib/GStr.cpp:482:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::trim(const char*)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
./gclib/gff.h:343:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
343 | struct {
| ^
In file included from rlink.h:6:
./gclib/GSam.h:32:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
32 | struct {
| ^
./gclib/gff.h:706:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
706 | struct {
| ^
./gclib/gff.h:1165:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
1165 | struct {
| ^
In file included from rlink.h:6:
./gclib/GSam.h:32:16: warning: ISO C++ prohibits anonymous structs [-Wpedantic]
32 | struct {
| ^
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::trimL(char)' at gclib/GStr.cpp:572:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::trimL(char)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::trimL(const char*)' at gclib/GStr.cpp:590:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::trimL(const char*)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::padR(uint, char)' at gclib/GStr.cpp:605:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::padR(uint, char)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::padL(uint, char)' at gclib/GStr.cpp:615:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::padL(uint, char)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::padC(uint, char)' at gclib/GStr.cpp:626:23:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::padC(uint, char)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
stringtie.cpp: In function 'int main(int, char**)':
stringtie.cpp:468:18: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'unsigned int'} [-Wsign-compare]
468 | if (tstackSize<defStackSize){
| ~~~~~~~~~~^~~~~~~~~~~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::tr(const char*, const char*)' at gclib/GStr.cpp:786:25:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::tr(const char*, const char*)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::paste(const GStr&, int, int)' at gclib/GStr.cpp:917:30:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::paste(const GStr&, int, int)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::paste(const char*, int, int)' at gclib/GStr.cpp:950:30:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::paste(const char*, int, int)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::insert(const GStr&, int)' at gclib/GStr.cpp:975:30:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::insert(const GStr&, int)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'GStr& GStr::insert(const char*, int)' at gclib/GStr.cpp:1000:30:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'GStr& GStr::insert(const char*, int)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In static member function 'static GStr::Data* GStr::new_data(uint, uint)',
inlined from 'size_t GStr::read(FILE*, const char*, size_t)' at gclib/GStr.cpp:1380:22:
gclib/GBase.h:176:28: warning: 'data' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/GStr.cpp:21:9: note: in expansion of macro 'GMALLOC'
21 | GMALLOC(data, sizeof(Data)+len+addcap);
| ^~~~~~~
gclib/GStr.cpp: In member function 'size_t GStr::read(FILE*, const char*, size_t)':
gclib/GStr.cpp:20:15: note: 'data' was declared here
20 | Data* data;
| ^~~~
In file included from /usr/include/c++/14/algorithm:60,
from ./gclib/GVec.hh:10,
from ./gclib/GList.hh:8,
from ./gclib/GFastaIndex.h:12:
In static member function 'static _Up* std::__copy_move<_IsMove, true, std::random_access_iterator_tag>::__copy_m(_Tp*, _Tp*, _Up*) [with _Tp = unsigned int; _Up = unsigned int; bool _IsMove = true]',
inlined from '_OI std::__copy_move_a2(_II, _II, _OI) [with bool _IsMove = true; _II = unsigned int*; _OI = unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:521:30,
inlined from '_OI std::__copy_move_a1(_II, _II, _OI) [with bool _IsMove = true; _II = unsigned int*; _OI = unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:548:42,
inlined from '_OI std::__copy_move_a(_II, _II, _OI) [with bool _IsMove = true; _II = unsigned int*; _OI = unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:555:31,
inlined from '_OI std::move(_II, _II, _OI) [with _II = unsigned int*; _OI = unsigned int*]' at /usr/include/c++/14/bits/stl_algobase.h:683:38,
inlined from 'void GVec<OBJ>::setCapacity(int) [with OBJ = unsigned int]' at ./gclib/GVec.hh:109:18,
inlined from 'void GVec<OBJ>::Grow() [with OBJ = unsigned int]' at ./gclib/GVec.hh:323:13,
inlined from 'int GVec<OBJ>::Add(OBJ*) [with OBJ = unsigned int]' at ./gclib/GVec.hh:370:29,
inlined from 'int GVec<OBJ>::Add(OBJ&) [with OBJ = unsigned int]' at ./gclib/GVec.hh:59:36,
inlined from 'RC_Feature::RC_Feature(int, int, char, uint, uint)' at tablemaker.h:53:22,
inlined from 'void RC_TData::addFeature(int, int, GPVec<RC_Feature>&, uint&, GList<RC_Feature>&, GPVec<RC_Feature>&, int&)' at tablemaker.cpp:309:73:
/usr/include/c++/14/bits/stl_algobase.h:452:30: warning: 'void* __builtin_memcpy(void*, const void*, unsigned int)' forming offset 4 is out of the bounds [0, 4] [-Warray-bounds=]
452 | __builtin_memmove(__result, __first, sizeof(_Tp) * _Num);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from gclib/gff.h:6:
gclib/gff.cpp: In constructor 'BEDLine::BEDLine(GffReader*, const char*)':
gclib/GBase.h:176:28: warning: 'blen' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/gff.cpp:243:11: note: in expansion of macro 'GMALLOC'
243 | GMALLOC(blen, numexons * sizeof(char*));
| ^~~~~~~
gclib/gff.cpp:241:18: note: 'blen' was declared here
241 | char** blen;
| ^~~~
gclib/GBase.h:176:28: warning: 'bstart' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
gclib/gff.cpp:244:11: note: in expansion of macro 'GMALLOC'
244 | GMALLOC(bstart, numexons * sizeof(char*));
| ^~~~~~~
gclib/gff.cpp:242:18: note: 'bstart' was declared here
242 | char** bstart;
| ^~~~~~
In file included from ./gclib/GStr.h:5,
from rlink.h:4:
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(uint, bool)' at ./gclib/GBitVec.h:126:5,
inlined from 'GBitVec::GBitVec(uint, bool)' at ./gclib/GBitVec.h:118:12:
./gclib/GBase.h:254:12: warning: '*(void**)this' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3:
./gclib/GBase.h:254:12: warning: '*(void**)this' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'CTrGuidePat::CTrGuidePat(GBitVec, float, bool)' at rlink.h:221:44:
./gclib/GBase.h:254:12: warning: '*(void**)this' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'CTransfrag::CTransfrag(GVec<int>&, GBitVec&, float, bool, int, float)' at rlink.h:179:117:
./gclib/GBase.h:254:12: warning: '((void**)this)[4]' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'CTransfrag::CTransfrag(GVec<int>&, GBitVec&, float, bool, int, float)' at rlink.h:179:117,
inlined from 'CTransfrag* find_guide_partial_pat(GffObj*, GPVec<CGraphnode>&, int, int, GIntHash<int>&, GVec<int>&, int&)' at rlink.cpp:11569:48:
./gclib/GBase.h:254:12: warning: '((void**)<unknown>)[4]' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'CTransfrag::CTransfrag(GVec<int>&, GBitVec&, float, bool, int, float)' at rlink.h:179:117,
inlined from 'void process_transfrags(int, int, int, GPVec<CGraphnode>&, GPVec<CTransfrag>&, CTreePat*, GIntHash<int>&, GVec<CGuide>&, GList<CPrediction>&, GVec<int>&)' at rlink.cpp:5830:51:
./gclib/GBase.h:254:12: warning: '((void**)<unknown>)[4]' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
In constructor 'GBitVec::GBitVec(uint, bool)',
inlined from 'GBitVec::GBitVec(uint, bool)' at ./gclib/GBitVec.h:118:12,
inlined from 'void process_transfrags(int, int, int, GPVec<CGraphnode>&, GPVec<CTransfrag>&, CTreePat*, GIntHash<int>&, GVec<CGuide>&, GList<CPrediction>&, GVec<int>&)' at rlink.cpp:5826:29:
./gclib/GBase.h:176:28: warning: '*(void**)((char*)&trpat + offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
./gclib/GBitVec.h:126:5: note: in expansion of macro 'GMALLOC'
126 | GMALLOC(fBits, Capacity * sizeof(BitWord));
| ^~~~~~~
rlink.cpp: In function 'void process_transfrags(int, int, int, GPVec<CGraphnode>&, GPVec<CTransfrag>&, CTreePat*, GIntHash<int>&, GVec<CGuide>&, GList<CPrediction>&, GVec<int>&)':
rlink.cpp:5826:41: note: '*(void**)((char*)&trpat + offsetof(GBitVec, GBitVec::fBits))' was declared here
5826 | GBitVec trpat(gno+edgeno);
| ^~~~~
In copy constructor 'GBitVec::GBitVec(const GBitVec&)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'void process_refguides(int, int, GIntHash<int>&, int&, GPVec<CGraphnode>&, GPVec<CTransfrag>&, int, GVec<CGuide>&, BundleData*)' at rlink.cpp:11677:44:
./gclib/GBase.h:176:28: warning: '*(void**)((char*)&trpattern + offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
./gclib/GBitVec.h:158:5: note: in expansion of macro 'GMALLOC'
158 | GMALLOC(fBits, Capacity * sizeof(BitWord));
| ^~~~~~~
rlink.cpp: In function 'void process_refguides(int, int, GIntHash<int>&, int&, GPVec<CGraphnode>&, GPVec<CTransfrag>&, int, GVec<CGuide>&, BundleData*)':
rlink.cpp:11677:41: note: '*(void**)((char*)&trpattern + offsetof(GBitVec, GBitVec::fBits))' was declared here
11677 | GBitVec trpattern(transfrag[t]->pattern);
| ^~~~~~~~~
In copy constructor 'GBitVec::GBitVec(const GBitVec&)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'GBitVec traverse_dfs(int, int, CGraphnode*, CGraphnode*, GBitVec, int, GVec<bool>&, GPVec<CGraphnode>**, GPVec<CTransfrag>**, int&, GIntHash<int>**, int&)' at rlink.cpp:2461:28:
./gclib/GBase.h:176:28: warning: '*(void**)((char*)&childparents + offsetof(GBitVec, GBitVec::fBits))' may be used uninitialized [-Wmaybe-uninitialized]
176 | #define GMALLOC(ptr,size) if (!GMalloc((pointer*)(&ptr),size)) \
| ^~
./gclib/GBitVec.h:158:5: note: in expansion of macro 'GMALLOC'
158 | GMALLOC(fBits, Capacity * sizeof(BitWord));
| ^~~~~~~
rlink.cpp: In function 'GBitVec traverse_dfs(int, int, CGraphnode*, CGraphnode*, GBitVec, int, GVec<bool>&, GPVec<CGraphnode>**, GPVec<CTransfrag>**, int&, GIntHash<int>**, int&)':
rlink.cpp:2461:25: note: '*(void**)((char*)&childparents + offsetof(GBitVec, GBitVec::fBits))' was declared here
2461 | GBitVec childparents=parents;
| ^~~~~~~~~~~~
In function 'bool GMalloc(void**, long unsigned int)',
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:158:5,
inlined from 'GBitVec::GBitVec(const GBitVec&)' at ./gclib/GBitVec.h:150:3,
inlined from 'CTransfrag::CTransfrag(GVec<int>&, GBitVec&, float, bool, int, float)' at rlink.h:179:117,
inlined from 'int create_graph(int, int, int, CBundle*, GPVec<CBundlenode>&, GList<CJunction>&, GList<CJunction>&, GVec<CGraphinfo>**, GPVec<CGraphnode>**, GPVec<CTransfrag>**, GIntHash<int>**, BundleData*, int&, int&, GArray<GEdge>&, int)' at rlink.cpp:3591:59:
./gclib/GBase.h:254:12: warning: '((void**)<unknown>)[4]' may be used uninitialized [-Wmaybe-uninitialized]
254 | return *ptr!=NULL;
| ^~~~
g++ -Wl,-z,relro -Wl,-z,now -o stringtie gclib/GBase.o gclib/GArgs.o gclib/GStr.o gclib/GSam.o gclib/gdna.o gclib/codons.o gclib/GFastaIndex.o gclib/GFaSeqGet.o gclib/gff.o gclib/GThreads.o rlink.o tablemaker.o tmerge.o stringtie.o -pthread -lhts -lbz2 -lz -lm
WARNING: built DEBUG version [much slower], use "make clean release" for a faster, optimized version of the program.
make[2]: Leaving directory '/build/reproducible-path/stringtie-2.2.1+ds'
make[1]: Leaving directory '/build/reproducible-path/stringtie-2.2.1+ds'
rm -f debian/stringtie.debhelper.log
debian/rules override_dh_auto_test
make[1]: Entering directory '/build/reproducible-path/stringtie-2.2.1+ds'
echo "Disabling tests, as they require network access."
Disabling tests, as they require network access.
make[1]: Leaving directory '/build/reproducible-path/stringtie-2.2.1+ds'
create-stamp debian/debhelper-build-stamp
dh_prep
rm -f -- debian/stringtie.substvars
rm -fr -- debian/.debhelper/generated/stringtie/ debian/stringtie/ debian/tmp/
dh_auto_install --destdir=debian/stringtie/
install -m0755 -d /build/reproducible-path/stringtie-2.2.1\+ds/debian/stringtie
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/stringtie-2.2.1+ds'
dh_install prepDE.py3 usr/bin
install -m0755 -d debian/stringtie/usr/bin
cp --reflink=auto -a ./prepDE.py3 ./stringtie debian/stringtie/usr/bin/
mv debian/stringtie/usr/bin/prepDE.py3 debian/stringtie/usr/bin/prepDE.py
make[1]: Leaving directory '/build/reproducible-path/stringtie-2.2.1+ds'
dh_installdocs
install -m0755 -d debian/stringtie/usr/share/doc/stringtie
install -p -m0644 debian/copyright debian/stringtie/usr/share/doc/stringtie/copyright
dh_installchangelogs
install -m0755 -d debian/stringtie/usr/share/doc/stringtie
install -p -m0644 debian/.debhelper/generated/stringtie/dh_installchangelogs.dch.trimmed debian/stringtie/usr/share/doc/stringtie/changelog.Debian
dh_installman
install -m0755 -d debian/stringtie/usr/share/man/man1/
install -p -m0644 ./debian/stringtie.1 debian/stringtie/usr/share/man/man1/stringtie.1
man-recode --to-code UTF-8 --suffix .dh-new debian/stringtie/usr/share/man/man1/stringtie.1
mv debian/stringtie/usr/share/man/man1/stringtie.1.dh-new debian/stringtie/usr/share/man/man1/stringtie.1
chmod 0644 -- debian/stringtie/usr/share/man/man1/stringtie.1
dh_lintian
install -m0755 -d debian/stringtie/usr/share/lintian/overrides
install -p -m0644 debian/lintian-overrides debian/stringtie/usr/share/lintian/overrides/stringtie
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
cd debian/stringtie
chmod a-x usr/share/doc/stringtie/changelog.Debian usr/share/man/man1/stringtie.1
gzip -9nf usr/share/doc/stringtie/changelog.Debian usr/share/man/man1/stringtie.1
cd '/build/reproducible-path/stringtie-2.2.1+ds'
dh_fixperms
find debian/stringtie ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/stringtie/usr/share/doc -type f -a -true -a ! -regex 'debian/stringtie/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/stringtie/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/stringtie/usr/share/man debian/stringtie/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/stringtie -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/stringtie/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing
dh_dwz -a
dwz -- debian/stringtie/usr/bin/stringtie
dh_strip -a
install -m0755 -d debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/11
objcopy --only-keep-debug --compress-debug-sections debian/stringtie/usr/bin/stringtie debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/11/8bfb0385601a7424e9cd935b5398dc663e6913.debug
chmod 0644 -- debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/11/8bfb0385601a7424e9cd935b5398dc663e6913.debug
strip --remove-section=.comment --remove-section=.note debian/stringtie/usr/bin/stringtie
objcopy --add-gnu-debuglink debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/11/8bfb0385601a7424e9cd935b5398dc663e6913.debug debian/stringtie/usr/bin/stringtie
install -m0755 -d debian/.debhelper/stringtie/dbgsym-root/usr/share/doc
ln -s stringtie debian/.debhelper/stringtie/dbgsym-root/usr/share/doc/stringtie-dbgsym
install -m0755 -d debian/.debhelper/stringtie
dh_makeshlibs -a
rm -f debian/stringtie/DEBIAN/shlibs
dh_shlibdeps -a
install -m0755 -d debian/stringtie/DEBIAN
dpkg-shlibdeps -Tdebian/stringtie.substvars debian/stringtie/usr/bin/stringtie
dh_installdeb
install -m0755 -d debian/stringtie/DEBIAN
dh_gencontrol
install -m0755 -d debian/stringtie/DEBIAN
echo misc:Depends= >> debian/stringtie.substvars
echo misc:Pre-Depends= >> debian/stringtie.substvars
install -m0755 -d debian/.debhelper/stringtie/dbgsym-root/DEBIAN
dpkg-gencontrol -pstringtie -ldebian/changelog -Tdebian/stringtie.substvars -cdebian/control -Pdebian/.debhelper/stringtie/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=stringtie-dbgsym "-DDepends=stringtie (= \${binary:Version})" "-DDescription=debug symbols for stringtie" -DBuild-Ids=118bfb0385601a7424e9cd935b5398dc663e6913 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/stringtie/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pstringtie -ldebian/changelog -Tdebian/stringtie.substvars -cdebian/control -Pdebian/stringtie
chmod 0644 -- debian/stringtie/DEBIAN/control
dh_md5sums
install -m0755 -d debian/stringtie/DEBIAN
cd debian/stringtie >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/stringtie/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/stringtie/dbgsym-root/DEBIAN
cd debian/.debhelper/stringtie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/stringtie/dbgsym-root/DEBIAN/md5sums
dh_builddeb
dpkg-deb --root-owner-group --build debian/stringtie ..
dpkg-deb --root-owner-group --build debian/.debhelper/stringtie/dbgsym-root ..
dpkg-deb: building package 'stringtie' in '../stringtie_2.2.1+ds-3_i386.deb'.
dpkg-deb: building package 'stringtie-dbgsym' in '../stringtie-dbgsym_2.2.1+ds-3_i386.deb'.
dpkg-genbuildinfo --build=binary -O../stringtie_2.2.1+ds-3_i386.buildinfo
dpkg-genchanges --build=binary -O../stringtie_2.2.1+ds-3_i386.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/25986 and its subdirectories
I: Current time: Sat Mar 1 04:44:50 -12 2025
I: pbuilder-time-stamp: 1740847490