I: pbuilder: network access will be disabled during build
I: Current time: Mon Mar 30 20:19:38 +14 2026
I: pbuilder-time-stamp: 1774851578
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [libncl_2.1.21+git20210811.b1213a7-6.dsc]
I: copying [./libncl_2.1.21+git20210811.b1213a7.orig.tar.xz]
I: copying [./libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./libncl_2.1.21+git20210811.b1213a7-6.dsc: unsupported subcommand
dpkg-source: info: extracting libncl in libncl-2.1.21+git20210811.b1213a7
dpkg-source: info: unpacking libncl_2.1.21+git20210811.b1213a7.orig.tar.xz
dpkg-source: info: unpacking libncl_2.1.21+git20210811.b1213a7-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix_rpath_issue.patch
dpkg-source: info: applying set_soname_version.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying 2to3.patch
dpkg-source: info: applying python3.11.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/D01_modify_environment starting
debug: Running on ionos5-amd64.
I: Changing host+domainname to test build reproducibility
I: Adding a custom variable just for the fun of it...
I: Changing /bin/sh to bash
'/bin/sh' -> '/bin/bash'
lrwxrwxrwx 1 root root 9 Mar 30 06:19 /bin/sh -> /bin/bash
I: Setting pbuilder2's login shell to /bin/bash
I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/D01_modify_environment finished
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/D02_print_environment starting
I: set
BASH=/bin/sh
BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
BASH_ALIASES=()
BASH_ARGC=()
BASH_ARGV=()
BASH_CMDS=()
BASH_LINENO=([0]="12" [1]="0")
BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu")
BASH_VERSION='5.2.37(1)-release'
BUILDDIR=/build/reproducible-path
BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
BUILDUSERNAME=pbuilder2
BUILD_ARCH=amd64
DEBIAN_FRONTEND=noninteractive
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 '
DIRSTACK=()
DISTRIBUTION=unstable
EUID=0
FUNCNAME=([0]="Echo" [1]="main")
GROUPS=()
HOME=/root
HOSTNAME=i-capture-the-hostname
HOSTTYPE=x86_64
HOST_ARCH=amd64
IFS='
'
INVOCATION_ID=e62cb32bdc9b42418a665828740d8a1a
LANG=C
LANGUAGE=et_EE:et
LC_ALL=C
MACHTYPE=x86_64-pc-linux-gnu
MAIL=/var/mail/root
OPTERR=1
OPTIND=1
OSTYPE=linux-gnu
PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
PBCURRENTCOMMANDLINEOPERATION=build
PBUILDER_OPERATION=build
PBUILDER_PKGDATADIR=/usr/share/pbuilder
PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
PBUILDER_SYSCONFDIR=/etc
PIPESTATUS=([0]="0")
POSIXLY_CORRECT=y
PPID=2318425
PS4='+ '
PWD=/
SHELL=/bin/bash
SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
SHLVL=3
SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.otsKDvkC/pbuilderrc_xSDN --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.otsKDvkC/b2 --logfile b2/build.log libncl_2.1.21+git20210811.b1213a7-6.dsc'
SUDO_GID=110
SUDO_UID=105
SUDO_USER=jenkins
TERM=unknown
TZ=/usr/share/zoneinfo/Etc/GMT-14
UID=0
USER=root
_='I: set'
http_proxy=http://213.165.73.152:3128
I: uname -a
Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux
I: ls -l /bin
lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), d-shlibs, python3
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19775 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on d-shlibs; however:
Package d-shlibs is not installed.
pbuilder-satisfydepends-dummy depends on python3; however:
Package python3 is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget
0 packages upgraded, 45 newly installed, 0 to remove and 0 not upgraded.
Need to get 27.1 MB of archives. After unpacking 103 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.2-1 [859 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.2-1 [2205 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 12.0.0 [28.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-2 [259 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.7-1 [23.9 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.2-1 [1979 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.2-1 [745 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-4 [92.4 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.17-3 [862 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 d-shlibs all 0.109 [11.1 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get: 37 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 39 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Fetched 27.1 MB in 0s (146 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:amd64.
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(Reading database ... 19775 files and directories currently installed.)
Preparing to unpack .../libpython3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.2-1) ...
Selecting previously unselected package libexpat1:amd64.
Preparing to unpack .../libexpat1_2.6.4-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.6.4-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.2-1_amd64.deb ...
Unpacking python3.13-minimal (3.13.2-1) ...
Setting up libpython3.13-minimal:amd64 (3.13.2-1) ...
Setting up libexpat1:amd64 (2.6.4-1) ...
Setting up python3.13-minimal (3.13.2-1) ...
Selecting previously unselected package python3-minimal.
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Unpacking python3-minimal (3.13.1-2) ...
Selecting previously unselected package media-types.
Preparing to unpack .../1-media-types_12.0.0_all.deb ...
Unpacking media-types (12.0.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../2-netbase_6.4_all.deb ...
Unpacking netbase (6.4) ...
Selecting previously unselected package tzdata.
Preparing to unpack .../3-tzdata_2025a-2_all.deb ...
Unpacking tzdata (2025a-2) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../4-libffi8_3.4.7-1_amd64.deb ...
Unpacking libffi8:amd64 (3.4.7-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../5-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../6-libreadline8t64_8.2-6_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.2-6) ...
Selecting previously unselected package libpython3.13-stdlib:amd64.
Preparing to unpack .../7-libpython3.13-stdlib_3.13.2-1_amd64.deb ...
Unpacking libpython3.13-stdlib:amd64 (3.13.2-1) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../8-python3.13_3.13.2-1_amd64.deb ...
Unpacking python3.13 (3.13.2-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
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Unpacking libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up python3-minimal (3.13.1-2) ...
Selecting previously unselected package python3.
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(Reading database ... 21119 files and directories currently installed.)
Preparing to unpack .../00-python3_3.13.1-2_amd64.deb ...
Unpacking python3 (3.13.1-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ...
Unpacking sensible-utils (0.0.24) ...
Selecting previously unselected package libmagic-mgc.
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Unpacking libmagic-mgc (1:5.45-3+b1) ...
Selecting previously unselected package libmagic1t64:amd64.
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Unpacking libmagic1t64:amd64 (1:5.45-3+b1) ...
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Unpacking file (1:5.45-3+b1) ...
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Unpacking gettext-base (0.23.1-1) ...
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Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
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Unpacking bsdextrautils (2.40.4-4) ...
Selecting previously unselected package libpipeline1:amd64.
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Unpacking libpipeline1:amd64 (1.5.8-1) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.13.0-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.19-5_amd64.deb ...
Unpacking m4 (1.4.19-5) ...
Selecting previously unselected package autoconf.
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Unpacking autoconf (2.72-3) ...
Selecting previously unselected package autotools-dev.
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Current default time zone: 'Etc/UTC'
Local time is now: Mon Mar 30 06:20:05 UTC 2026.
Universal Time is now: Mon Mar 30 06:20:05 UTC 2026.
Run 'dpkg-reconfigure tzdata' if you wish to change it.
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I: Building the package
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/A99_set_merged_usr starting
Not re-configuring usrmerge for unstable
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/A99_set_merged_usr finished
hostname: Name or service not known
I: Running cd /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libncl_2.1.21+git20210811.b1213a7-6_source.changes
dpkg-buildpackage: info: source package libncl
dpkg-buildpackage: info: source version 2.1.21+git20210811.b1213a7-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <emollier@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
debian/rules clean
dh clean
debian/rules override_dh_clean
make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
dh_clean
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make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'.
libtoolize: copying file 'config/libtool.m4'
libtoolize: copying file 'config/ltoptions.m4'
libtoolize: copying file 'config/ltsugar.m4'
libtoolize: copying file 'config/ltversion.m4'
libtoolize: copying file 'config/lt~obsolete.m4'
configure.ac:28: warning: The macro 'AC_PROG_LIBTOOL' is obsolete.
configure.ac:28: You should run autoupdate.
config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from...
configure.ac:28: the top level
configure.ac:42: warning: The macro 'AC_HELP_STRING' is obsolete.
configure.ac:42: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
config/ax_cxx_flags.m4:5: AX_CXXFLAGS is expanded from...
configure.ac:42: the top level
configure.ac:124: warning: The macro 'AC_HEADER_STDC' is obsolete.
configure.ac:124: You should run autoupdate.
./lib/autoconf/headers.m4:663: AC_HEADER_STDC is expanded from...
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configure.ac:155: warning: The macro 'AC_HELP_STRING' is obsolete.
configure.ac:155: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:155: the top level
configure.ac:167: warning: The macro 'AC_HELP_STRING' is obsolete.
configure.ac:167: You should run autoupdate.
./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from...
configure.ac:167: the top level
configure.ac:28: installing 'config/compile'
configure.ac:21: installing 'config/missing'
example/basiccmdline/Makefile.am: installing 'config/depcomp'
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
dh_auto_configure -- --with-constfuncs=yes
./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-constfuncs=yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
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checking whether make supports nested variables... yes
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checking whether UID '2222' is supported by ustar format... yes
checking whether GID '2222' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether ln -s works... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking whether make supports the include directive... yes (GNU style)
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking for a sed that does not truncate output... /usr/bin/sed
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checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
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checking how to recognize dependent libraries... pass_all
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checking command to parse /usr/bin/nm -B output from gcc object... ok
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checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking for g++... g++
checking whether the compiler supports GNU C++... yes
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checking for g++ option to enable C++11 features... none needed
checking dependency style of g++... none
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
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checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
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checking python3 module: subprocess... yes
checking whether make sets $(MAKE)... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating example/Makefile
config.status: creating example/basiccmdline/Makefile
config.status: creating example/check-taxo-nodes/Makefile
config.status: creating example/compressor/Makefile
config.status: creating example/find-unsupported-edges/Makefile
config.status: creating example/gapcode/Makefile
config.status: creating example/ot-subtree/Makefile
config.status: creating example/ot-tree-inspect/Makefile
config.status: creating example/nclsimplest/Makefile
config.status: creating example/ncltest/Makefile
config.status: creating example/normalizer/Makefile
config.status: creating example/patristic/Makefile
config.status: creating example/phylobaseinterface/Makefile
config.status: creating example/polytomy-count/Makefile
config.status: creating example/outdeg1count/Makefile
config.status: creating example/splitsinfile/Makefile
config.status: creating example/subsetter/Makefile
config.status: creating example/translate/Makefile
config.status: creating ncl/Makefile
config.status: creating test/Makefile
config.status: creating nclv2.1.pc
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
dh_auto_build
make -j42
make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make all-recursive
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
Making all in ncl
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nxsassumptionsblock.lo nxsassumptionsblock.cpp
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/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nxsexception.lo nxsexception.cpp
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/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nxsstring.lo nxsstring.cpp
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libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsassumptionsblock.cpp -fPIC -DPIC -o .libs/nxsassumptionsblock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsblock.cpp -fPIC -DPIC -o .libs/nxsblock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxspublicblocks.cpp -fPIC -DPIC -o .libs/nxspublicblocks.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdatablock.cpp -fPIC -DPIC -o .libs/nxsdatablock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscxxdiscretematrix.cpp -fPIC -DPIC -o .libs/nxscxxdiscretematrix.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscharactersblock.cpp -fPIC -DPIC -o .libs/nxscharactersblock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdistancesblock.cpp -fPIC -DPIC -o .libs/nxsdistancesblock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsexception.cpp -fPIC -DPIC -o .libs/nxsexception.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstoken.cpp -fPIC -DPIC -o .libs/nxstoken.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxablock.cpp -fPIC -DPIC -o .libs/nxstaxablock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxssetreader.cpp -fPIC -DPIC -o .libs/nxssetreader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsstring.cpp -fPIC -DPIC -o .libs/nxsstring.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsreader.cpp -fPIC -DPIC -o .libs/nxsreader.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsmultiformat.cpp -fPIC -DPIC -o .libs/nxsmultiformat.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsunalignedblock.cpp -fPIC -DPIC -o .libs/nxsunalignedblock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxaassociationblock.cpp -fPIC -DPIC -o .libs/nxstaxaassociationblock.o
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstreesblock.cpp -fPIC -DPIC -o .libs/nxstreesblock.o
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from nxsblock.cpp:21:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from ../ncl/nxsdefs.h:22,
from nxsblock.cpp:20:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxsunalignedblock.h:24,
from nxsunalignedblock.cpp:21:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from ../ncl/nxsdefs.h:22,
from ../ncl/nxsunalignedblock.h:23:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from nxsexception.cpp:20:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/functional:49,
from ../ncl/nxsstring.h:26:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxscharactersblock.h:29,
from ../ncl/nxsdatablock.h:23,
from nxsdatablock.cpp:20:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/sstream:40,
from ../ncl/nxscharactersblock.h:23:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from nxstaxablock.cpp:20:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from ../ncl/nxsdefs.h:22,
from ../ncl/nxstaxablock.h:22:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxstoken.h:23,
from nxstoken.cpp:22:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/sstream:40,
from nxstoken.cpp:21:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxscharactersblock.h:29,
from ../ncl/nxscxxdiscretematrix.h:28,
from nxscxxdiscretematrix.cpp:20:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/streambuf:43,
from /usr/include/c++/14/bits/streambuf_iterator.h:35,
from /usr/include/c++/14/iterator:66,
from nxscxxdiscretematrix.cpp:19:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxstreesblock.h:25,
from nxstreesblock.cpp:23:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/sstream:40,
from nxstreesblock.cpp:20:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxspublicblocks.h:24,
from nxspublicblocks.cpp:24:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from nxspublicblocks.cpp:22:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxsassumptionsblock.h:26,
from nxsassumptionsblock.cpp:22:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/iomanip:42,
from nxsassumptionsblock.cpp:19:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxsdistancesblock.h:24,
from nxsdistancesblock.cpp:23:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/iomanip:42,
from nxsdistancesblock.cpp:19:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxstoken.h:23,
from ../ncl/nxssetreader.h:23,
from nxssetreader.cpp:20:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/sstream:40,
from ../ncl/nxssetreader.h:22:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxspublicblocks.h:24,
from ../ncl/nxsmultiformat.h:25,
from nxsmultiformat.cpp:50:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from nxsmultiformat.cpp:48:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxscharactersblock.h:29,
from nxscharactersblock.cpp:26:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/iomanip:42,
from nxscharactersblock.cpp:23:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsexception.h:23,
from ../ncl/nxsblock.h:24,
from ../ncl/nxstaxablock.h:23,
from ../ncl/nxstaxaassociationblock.h:23,
from nxstaxaassociationblock.cpp:25:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/iomanip:42,
from nxstaxaassociationblock.cpp:20:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from nxsstring.cpp:25:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/ostream:40,
from /usr/include/c++/14/iostream:41,
from ../ncl/nxsdefs.h:22,
from nxsstring.cpp:24:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../ncl/nxsreader.h:24,
from nxsreader.cpp:26:
../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/stl_tree.h:65,
from /usr/include/c++/14/set:62,
from nxsreader.cpp:21:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsexception.cpp -o nxsexception.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsstring.cpp -o nxsstring.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxssetreader.cpp -o nxssetreader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsblock.cpp -o nxsblock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxaassociationblock.cpp -o nxstaxaassociationblock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdistancesblock.cpp -o nxsdistancesblock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsdatablock.cpp -o nxsdatablock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstoken.cpp -o nxstoken.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstaxablock.cpp -o nxstaxablock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscxxdiscretematrix.cpp -o nxscxxdiscretematrix.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsunalignedblock.cpp -o nxsunalignedblock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsreader.cpp -o nxsreader.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsmultiformat.cpp -o nxsmultiformat.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxspublicblocks.cpp -o nxspublicblocks.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxstreesblock.cpp -o nxstreesblock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxsassumptionsblock.cpp -o nxsassumptionsblock.o >/dev/null 2>&1
libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -DNCL_CONST_FUNCS -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c nxscharactersblock.cpp -o nxscharactersblock.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -version-info 2:0:0 -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o libncl.la -rpath /usr/lib/x86_64-linux-gnu nxsassumptionsblock.lo nxsblock.lo nxscharactersblock.lo nxscxxdiscretematrix.lo nxsdatablock.lo nxsdistancesblock.lo nxsexception.lo nxsmultiformat.lo nxspublicblocks.lo nxsreader.lo nxssetreader.lo nxsstring.lo nxstaxablock.lo nxstaxaassociationblock.lo nxstoken.lo nxstreesblock.lo nxsunalignedblock.lo
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/nxsassumptionsblock.o .libs/nxsblock.o .libs/nxscharactersblock.o .libs/nxscxxdiscretematrix.o .libs/nxsdatablock.o .libs/nxsdistancesblock.o .libs/nxsexception.o .libs/nxsmultiformat.o .libs/nxspublicblocks.o .libs/nxsreader.o .libs/nxssetreader.o .libs/nxsstring.o .libs/nxstaxablock.o .libs/nxstaxaassociationblock.o .libs/nxstoken.o .libs/nxstreesblock.o .libs/nxsunalignedblock.o -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -fstack-protector-strong -Werror=format-security -O3 -flto=auto -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libncl.so.2 -o .libs/libncl.so.2.0.0
libtool: link: (cd ".libs" && rm -f "libncl.so.2" && ln -s "libncl.so.2.0.0" "libncl.so.2")
libtool: link: (cd ".libs" && rm -f "libncl.so" && ln -s "libncl.so.2.0.0" "libncl.so")
libtool: link: ar cr .libs/libncl.a nxsassumptionsblock.o nxsblock.o nxscharactersblock.o nxscxxdiscretematrix.o nxsdatablock.o nxsdistancesblock.o nxsexception.o nxsmultiformat.o nxspublicblocks.o nxsreader.o nxssetreader.o nxsstring.o nxstaxablock.o nxstaxaassociationblock.o nxstoken.o nxstreesblock.o nxsunalignedblock.o
libtool: link: ranlib .libs/libncl.a
libtool: link: ( cd ".libs" && rm -f "libncl.la" && ln -s "../libncl.la" "libncl.la" )
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
Making all in example
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
Making all in basiccmdline
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o basiccmdline.o basiccmdline.cpp
In file included from ../../ncl/ncl.h:79,
from basiccmdline.cpp:20:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o basiccmdline basiccmdline.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/basiccmdline basiccmdline.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
Making all in check-taxo-nodes
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o checktaxonnodes-checktaxonnodes.o `test -f 'checktaxonnodes.cpp' || echo './'`checktaxonnodes.cpp
In file included from ../../ncl/ncl.h:79,
from checktaxonnodes.cpp:20:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/checktaxonnodes checktaxonnodes-checktaxonnodes.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
Making all in compressor
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSCharacterCompressor-compressor.o `test -f 'compressor.cpp' || echo './'`compressor.cpp
In file included from ../../ncl/nxsexception.h:23,
from ../../ncl/nxsblock.h:24,
from ../../ncl/nxstaxablock.h:23,
from ../../ncl/nxscharactersblock.h:29,
from ../../ncl/nxscxxdiscretematrix.h:28,
from compressor.cpp:4:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from compressor.cpp:1:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSCharacterCompressor NEXUSCharacterCompressor-compressor.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
Making all in find-unsupported-edges
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o findunsupportededges-findunsupportededges.o `test -f 'findunsupportededges.cpp' || echo './'`findunsupportededges.cpp
In file included from ../../ncl/ncl.h:79,
from findunsupportededges.cpp:20:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/findunsupportededges findunsupportededges-findunsupportededges.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
Making all in gapcode
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSgapcode-gapcode.o `test -f 'gapcode.cpp' || echo './'`gapcode.cpp
In file included from ../../ncl/ncl.h:79,
from gapcode.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSgapcode NEXUSgapcode-gapcode.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
Making all in nclsimplest
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
g++ -DHAVE_CONFIG_H -I. -I../.. -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o nclsimplest.o nclsimplest.cpp
In file included from ../../ncl/ncl.h:79,
from nclsimplest.cpp:1:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o nclsimplest nclsimplest.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/nclsimplest nclsimplest.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
Making all in ncltest
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o ncltest.o ncltest.cpp
In file included from ../../ncl/ncl.h:79,
from ncltest.cpp:20:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o ncltest ncltest.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncltest ncltest.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
Making all in normalizer
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o normalizer.o normalizer.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_VALIDATE_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSvalidator-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLconverter-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLconverter-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONVERTER_APP -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLconverter-converter.o `test -f 'converter.cpp' || echo './'`converter.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DJUST_REPORT_NEXUS -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSinspector-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEX_us2ml-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DTO_NEXML_CONVERTER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEX_us2ml-us2ml.o `test -f 'us2ml.cpp' || echo './'`us2ml.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DMULTIFILE_NEXUS_READER -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSunion-normalizer.o `test -f 'normalizer.cpp' || echo './'`normalizer.cpp
In file included from ../../ncl/ncl.h:79,
from us2ml.cpp:22:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from normalizer.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from converter.cpp:48:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from normalizer.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from us2ml.cpp:22:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from normalizer.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from normalizer.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from normalizer.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from normalizer.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSnormalizer normalizer.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSnormalizer normalizer.o ../../ncl/.libs/libncl.so
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/libncl.la
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSunion NEXUSunion-normalizer.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSvalidator NEXUSvalidator-normalizer.o ../../ncl/.libs/libncl.so
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSunion NEXUSunion-normalizer.o ../../ncl/.libs/libncl.so
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSinspector NEXUSinspector-normalizer.o ../../ncl/.libs/libncl.so
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEX_us2ml NEX_us2ml-normalizer.o NEX_us2ml-us2ml.o ../../ncl/.libs/libncl.so
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NCLconverter NCLconverter-normalizer.o NCLconverter-us2ml.o NCLconverter-converter.o ../../ncl/.libs/libncl.so
normalizer.cpp:102:14: warning: 'substituteSafeTaxaLabels' violates the C++ One Definition Rule [-Wodr]
102 | void substituteSafeTaxaLabels(PublicNexusReader & reader, std::string filepath, bool evenTrivial);
| ^
converter.cpp:140:6: note: return value type mismatch
140 | bool substituteSafeTaxaLabels(PublicNexusReader &nexusReader, std::string filepath, bool evenTrivial)
| ^
converter.cpp:140:6: note: type 'bool' should match type 'void'
converter.cpp:140:6: note: 'substituteSafeTaxaLabels' was previously declared here
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
Making all in ot-subtree
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o otsubtree-otsubtree.o `test -f 'otsubtree.cpp' || echo './'`otsubtree.cpp
In file included from ../../ncl/ncl.h:79,
from otsubtree.cpp:20:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o otsubtree otsubtree-otsubtree.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otsubtree otsubtree-otsubtree.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
Making all in ot-tree-inspect
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o otTreeInspect-ot_tree_inspect.o `test -f 'ot_tree_inspect.cpp' || echo './'`ot_tree_inspect.cpp
In file included from ../../ncl/ncl.h:79,
from ot_tree_inspect.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/otTreeInspect otTreeInspect-ot_tree_inspect.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
Making all in outdeg1count
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o outdeg1count-outdeg1count.o `test -f 'outdeg1count.cpp' || echo './'`outdeg1count.cpp
In file included from ../../ncl/ncl.h:79,
from outdeg1count.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o outdeg1count outdeg1count-outdeg1count.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/outdeg1count outdeg1count-outdeg1count.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
Making all in patristic
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o patristic.o patristic.cpp
In file included from ../../ncl/ncl.h:79,
from patristic.cpp:33:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o patristicmat patristic.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/patristicmat patristic.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
Making all in phylobaseinterface
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NCLInterface.o NCLInterface.cpp
In file included from ../../ncl/ncl.h:79,
from NCLInterface.cpp:24:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/PhylobaseNCLInterfaceExample NCLInterface.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
Making all in polytomy-count
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o polytomycount-polytomy_count.o `test -f 'polytomy_count.cpp' || echo './'`polytomy_count.cpp
In file included from ../../ncl/ncl.h:79,
from polytomy_count.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o polytomycount polytomycount-polytomy_count.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/polytomycount polytomycount-polytomy_count.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
Making all in splitsinfile
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUStosplits-splitsinfile.o `test -f 'splitsinfile.cpp' || echo './'`splitsinfile.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUStosplits-splitsstructs.o `test -f 'splitsstructs.cpp' || echo './'`splitsstructs.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o splitsinfile.o splitsinfile.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o splitsstructs.o splitsstructs.cpp
In file included from ../../ncl/nxsexception.h:23,
from ../../ncl/nxsblock.h:24,
from ../../ncl/nxstaxablock.h:23,
from ../../ncl/nxstreesblock.h:25,
from splitsstructs.h:9,
from splitsstructs.cpp:1:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
from /usr/include/c++/14/vector:68,
from splitsstructs.h:3:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/nxsexception.h:23,
from ../../ncl/nxsblock.h:24,
from ../../ncl/nxstaxablock.h:23,
from ../../ncl/nxstreesblock.h:25,
from splitsstructs.h:9,
from splitsstructs.cpp:1:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/bits/refwrap.h:39,
from /usr/include/c++/14/vector:68,
from splitsstructs.h:3:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from splitsinfile.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
In file included from ../../ncl/ncl.h:79,
from splitsinfile.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/libncl.la
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o majrule splitsinfile.o splitsstructs.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStosplits NEXUStosplits-splitsinfile.o NEXUStosplits-splitsstructs.o ../../ncl/.libs/libncl.so
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/majrule splitsinfile.o splitsstructs.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
Making all in subsetter
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUSsubsetter-subsetter.o `test -f 'subsetter.cpp' || echo './'`subsetter.cpp
In file included from ../../ncl/nxsexception.h:23,
from ../../ncl/nxsblock.h:24,
from ../../ncl/nxspublicblocks.h:24,
from ../../ncl/nxsmultiformat.h:25,
from subsetter.cpp:4:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from subsetter.cpp:1:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUSsubsetter NEXUSsubsetter-subsetter.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
Making all in translate
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../ncl -DNCL_CONST_FUNCS -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -c -o NEXUStranslate-translateNuc.o `test -f 'translateNuc.cpp' || echo './'`translateNuc.cpp
In file included from ../../ncl/ncl.h:79,
from translateNuc.cpp:46:
../../ncl/nxsstring.h:266:17: warning: 'template<class _Arg1, class _Arg2, class _Result> struct std::binary_function' is deprecated [-Wdeprecated-declarations]
266 | : public std::binary_function<NxsString, NxsString, bool>
| ^~~~~~~~~~~~~~~
In file included from /usr/include/c++/14/string:49,
from /usr/include/c++/14/bits/locale_classes.h:40,
from /usr/include/c++/14/bits/ios_base.h:41,
from /usr/include/c++/14/ios:44,
from /usr/include/c++/14/istream:40,
from /usr/include/c++/14/fstream:40,
from ../../ncl/ncl.h:45:
/usr/include/c++/14/bits/stl_function.h:131:12: note: declared here
131 | struct binary_function
| ^~~~~~~~~~~~~~~
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -o NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/libncl.la
libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -ffast-math -flto=auto -ffat-lto-objects -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/NEXUStranslate NEXUStranslate-translateNuc.o ../../ncl/.libs/libncl.so
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
Making all in test
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
dh_auto_test
make -j42 check "TESTSUITEFLAGS=-j42 --verbose" VERBOSE=1
make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
Making check in ncl
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
Making check in example
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
Making check in basiccmdline
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
Making check in check-taxo-nodes
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
Making check in compressor
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
Making check in find-unsupported-edges
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
Making check in gapcode
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
Making check in nclsimplest
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
Making check in ncltest
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
make check-local
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
/usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/ncltest/ncltest ../../test/OldValidIn ../../test/OldValidOut
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidIn/m.nex"
[Reading -s2 ]
[Reading -s2 ]
storing read block: TAXA
storing read block: CHARACTERS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidIn/m.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidOut/m.nex"
[Reading -s2 ]
[Reading -s2 ]
storing read block: TAXA
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest/ncltest succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/OldValidOut/m.nex
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
Making check in normalizer
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
make check-local
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
/usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/characters.nex ../../test/data
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/characters.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/characters.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/characters.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/characters.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/characters.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/characters.nex
/usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer/NEXUSnormalizer ../../data/sample.tre ../../test/data
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/sample.tre"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/sample.tre ]
Executing
storing read block: PAUP
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/data/sample.tre
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/sample.tre"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/sample.tre ]
Executing
storing read block: PAUP
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/data/sample.tre
/usr/bin/python3 ../../test/roundTripNCLTest.py ../../example/normalizer//NEXUSnormalizer ../../test/NTSValidIn ../../test/NTSValidOut
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/linktest.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/linktest.nex ]
Executing
Warning:
Skipping command: blockid
at line 13, column (approximately) 11 (file position 189)
storing read block: TAXA
Warning:
Skipping command: blockid
at line 27, column (approximately) 11 (file position 388)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: CHARACTERS
Warning:
Skipping unknown LINK subcommand: characters
at line 61, column (approximately) 38 (file position 1551)
storing read block: TREES
Warning:
Skipping unknown LINK subcommand: characters
at line 71, column (approximately) 38 (file position 1745)
storing read block: TREES
storing implied block: ASSUMPTIONS
storing implied block: ASSUMPTIONS
storing read block: ASSUMPTIONS
Warning:
A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s).
at line 90, column (approximately) 42 (file position 2360)
storing read block: ASSUMPTIONS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/linktest.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/linktest.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/linktest.nex ]
Executing
Warning:
Skipping command: blockid
at line 6, column (approximately) 13 (file position 168)
storing read block: TAXA
Warning:
Skipping command: blockid
at line 12, column (approximately) 13 (file position 341)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: TREES
storing read block: TREES
storing read block: SETS
storing read block: SETS
storing read block: SETS
Warning:
A TaxSet with the name o has already been encountered. The later definition will preempt the earlier definition(s).
at line 84, column (approximately) 20 (file position 2384)
storing read block: SETS
storing read block: SETS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/linktest.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/m.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/m.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/m.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/m.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/m.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: SETS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/m.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/mdata.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/mdata.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/mdata.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/mdata.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/mdata.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: SETS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/mdata.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/avian_ovomucoids.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/avian_ovomucoids.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/avian_ovomucoids.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/avian_ovomucoids.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/avian_ovomucoids.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/avian_ovomucoids.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-dos.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-dos.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-dos.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-dos.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-dos.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-dos.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-unix.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-unix.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-unix.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-unix.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-unix.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-unix.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-rake.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-rake.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
storing read block: CODONS
Warning:
An * is ignored in a CHARSET command
at line 67, column (approximately) 46 (file position 929)
Warning:
An * is ignored in a CHARSET command
at line 68, column (approximately) 42 (file position 968)
storing read block: ASSUMPTIONS
storing read block: ASSUMPTIONS
storing read block: MESQUITECHARMODELS
storing read block: MESQUITE
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-rake.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-rake.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-rake.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
storing read block: CODONS
storing read block: SETS
storing read block: ASSUMPTIONS
storing read block: MESQUITECHARMODELS
storing read block: MESQUITE
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-rake.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock-quotes.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock-quotes.nex ]
Executing
Warning:
A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block.
at line 3, column (approximately) 7 (file position 26)
storing implied block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock-quotes.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock-quotes.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock-quotes.nex ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock-quotes.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/distances.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/distances.nex ]
Executing
storing read block: TAXA
storing read block: DISTANCES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/distances.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/distances.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/distances.nex ]
Executing
storing read block: TAXA
storing read block: DISTANCES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/distances.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/cynmix.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/cynmix.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/cynmix.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/cynmix.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/cynmix.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/cynmix.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/bglobin.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/bglobin.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/bglobin.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/bglobin.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/bglobin.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/bglobin.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/adh.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/adh.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/adh.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/adh.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/adh.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/adh.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock.nex ]
Executing
Warning:
A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block.
at line 3, column (approximately) 13 (file position 32)
storing implied block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/notaxablock.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock.nex ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/notaxablock.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/treeswithouttaxa.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/treeswithouttaxa.nex ]
Executing
Warning:
A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block.
at line 3, column (approximately) 10 (file position 26)
storing implied block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/treeswithouttaxa.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/treeswithouttaxa.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/treeswithouttaxa.nex ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/treeswithouttaxa.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/unaligned.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/unaligned.nex ]
Executing
storing read block: TAXA
storing read block: UNALIGNED
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/unaligned.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/unaligned.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/unaligned.nex ]
Executing
storing read block: TAXA
storing read block: UNALIGNED
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/unaligned.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mixed-line-endings.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mixed-line-endings.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mixed-line-endings.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mixed-line-endings.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mixed-line-endings.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mixed-line-endings.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/characters.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/characters.nex ]
Executing
Warning:
Skipping command: blockid
at line 13, column (approximately) 11 (file position 176)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/characters.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/characters.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/characters.nex ]
Executing
Warning:
Skipping command: blockid
at line 6, column (approximately) 13 (file position 183)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/characters.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/paup_characters.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/paup_characters.nex ]
Executing
Warning:
Skipping command: blockid
at line 13, column (approximately) 11 (file position 176)
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/paup_characters.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/paup_characters.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/paup_characters.nex ]
Executing
Warning:
Skipping command: blockid
at line 6, column (approximately) 13 (file position 188)
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/paup_characters.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/protein.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/protein.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/protein.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/protein.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/protein.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/protein.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/anolis.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/anolis.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/anolis.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/anolis.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/anolis.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/anolis.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/kim.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/kim.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/kim.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/kim.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/kim.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/kim.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/nhxtree.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/nhxtree.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
storing read block: CODONS
Warning:
An * is ignored in a CHARSET command
at line 67, column (approximately) 46 (file position 1014)
Warning:
An * is ignored in a CHARSET command
at line 68, column (approximately) 42 (file position 1053)
storing read block: ASSUMPTIONS
storing read block: ASSUMPTIONS
storing read block: MESQUITECHARMODELS
storing read block: MESQUITE
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/nhxtree.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/nhxtree.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/nhxtree.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
storing read block: CODONS
storing read block: SETS
storing read block: ASSUMPTIONS
storing read block: MESQUITECHARMODELS
storing read block: MESQUITE
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/nhxtree.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/t.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/t.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/t.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/t.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/t.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/t.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/replicase.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/replicase.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/replicase.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/replicase.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/replicase.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/replicase.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mac.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mac.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/basic-bush-mac.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mac.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mac.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/basic-bush-mac.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/charsets.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/charsets.nex ]
Executing
Warning:
Skipping command: blockid
at line 13, column (approximately) 11 (file position 176)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: SETS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/charsets.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/charsets.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/charsets.nex ]
Executing
Warning:
Skipping command: blockid
at line 6, column (approximately) 13 (file position 183)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: SETS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/charsets.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/partitions.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/partitions.nex ]
Executing
Warning:
Skipping command: blockid
at line 13, column (approximately) 11 (file position 176)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
storing read block: SETS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/partitions.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/partitions.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/partitions.nex ]
Executing
Warning:
Skipping command: blockid
at line 6, column (approximately) 13 (file position 183)
storing read block: TAXA
storing read block: CHARACTERS
storing read block: TREES
storing read block: SETS
storing read block: ASSUMPTIONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/partitions.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/associates.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/associates.nex ]
Executing
storing read block: TAXA
storing read block: TAXA
storing read block: TAXAASSOCIATION
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/associates.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/associates.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/associates.nex ]
Executing
storing read block: TAXA
storing read block: TAXA
storing read block: TAXAASSOCIATION
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/associates.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/dzmissing_bug.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/dzmissing_bug.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: ASSUMPTIONS
storing read block: MACCLADE
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/dzmissing_bug.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/dzmissing_bug.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/dzmissing_bug.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
storing read block: ASSUMPTIONS
storing read block: MACCLADE
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/dzmissing_bug.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/primates.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/primates.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/primates.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/primates.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/primates.nex ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/primates.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/parens_intree.tre"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/parens_intree.tre ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidIn/parens_intree.tre
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/parens_intree.tre"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/parens_intree.tre ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/NTSValidOut/parens_intree.tre
/usr/bin/python3 ../../test/roundTripNCLTest.py -x ../../example/normalizer/NEXUSnormalizer ../../test/funkyValidIn ../../test/funkyValidOut
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidIn/choke.tre"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidIn/choke.tre ]
Executing
Warning:
A TAXA block should be read before the TREES block (but no TAXA block was found). Taxa will be inferred from their usage in the TREES block.
at line 5, column (approximately) 6 (file position 74)
storing implied block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidIn/choke.tre
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-x" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidOut/choke.tre"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidOut/choke.tre ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/funkyValidOut/choke.tre
/usr/bin/python3 ../../test/roundTripNCLTest.py -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalValidIn ../../test/ExternalValidOut
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_rana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_rana.phy ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_rana.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_rana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_rana.phy ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_rana.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylipinterleaved" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylipinterleaved_emboss.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylipinterleaved_emboss.phy ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylipinterleaved_emboss.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylipinterleaved_emboss.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylipinterleaved_emboss.phy ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylipinterleaved_emboss.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aarelaxedphylip_rana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aarelaxedphylip_rana.phy ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aarelaxedphylip_rana.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aarelaxedphylip_rana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aarelaxedphylip_rana.phy ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aarelaxedphylip_rana.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fphyliptree" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/phyliptree_simple.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/phyliptree_simple.phy ]
Executing
storing implied block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/phyliptree_simple.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/phyliptree_simple.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/phyliptree_simple.phy ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/phyliptree_simple.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-frelaxedphyliptree" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/relaxedphyliptree_q.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/relaxedphyliptree_q.phy ]
Executing
storing implied block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/relaxedphyliptree_q.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/relaxedphyliptree_q.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/relaxedphyliptree_q.phy ]
Executing
storing read block: TAXA
storing read block: TREES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/relaxedphyliptree_q.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylip_emboss.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylip_emboss.phy ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaphylip_emboss.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylip_emboss.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylip_emboss.phy ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaphylip_emboss.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_brana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_brana.phy ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/dnarelaxedphylip_brana.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_brana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_brana.phy ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/dnarelaxedphylip_brana.phy
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faafasta" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aafasta_twoprot.fas"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aafasta_twoprot.fas ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aafasta_twoprot.fas
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aafasta_twoprot.fas"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aafasta_twoprot.fas ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aafasta_twoprot.fas
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot_undec.aln"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot_undec.aln ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot_undec.aln
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot_undec.aln"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot_undec.aln ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot_undec.aln
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faaaln" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot.aln"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot.aln ]
Executing
storing implied block: TAXA
storing read block: DATA
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidIn/aaaln_twoprot.aln
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot.aln"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot.aln ]
Executing
storing read block: TAXA
storing read block: CHARACTERS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalValidOut/aaaln_twoprot.aln
/usr/bin/python3 ../../test/roundTripNCLTest.py -i -e ../../example/normalizer/NEXUSnormalizer ../../test/ExternalInvalidIn
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-fdnarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/dnarelaxedphylip_rana.phy ]
Executing
Error:
Illegal state code "q" found when reading site 2 for taxon grylioMVZ175945
at line 12, column (approximately) 28 (and file position 20065)
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer/NEXUSnormalizer" "-s2" "-faarelaxedphylip" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/aarelaxedphylip_rana.phy"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/ExternalInvalidIn/aarelaxedphylip_rana.phy ]
Executing
Error:
Sequence longer than 1976 found for taxon temporariaDMH84R1. The character "o" was found, and will be ignored. If the file position of this error corresponds to sequences for the next taxon in the matrix, then that is an indication that the sequences for taxon temporariaDMH84R1 are too short.
at line 3, column (approximately) 2 (and file position 2011)
/usr/bin/python3 ../../test/roundTripNCLTest.py -a ../../example/normalizer/NEXUSnormalizer
/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/.debhelper/generated/_source/home/.ncl_round_triprc does not exist. Test stepped skipped.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
Making check in ot-subtree
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
Making check in ot-tree-inspect
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
Making check in outdeg1count
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
Making check in patristic
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
Making check in phylobaseinterface
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
Making check in polytomy-count
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
Making check in splitsinfile
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
Making check in subsetter
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
Making check in translate
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make check-local
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
/usr/bin/python3 ../../test/roundTripNCLTest.py -o ../../example/translate/NEXUStranslate ../../test/TranslateIn ../../test/TranslateOut
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobinoof.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobinoof.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: CODONS
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobinoof.nex
"/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate" "-s2" "/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobin.nex"
[Reading /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobin.nex ]
Executing
storing implied block: TAXA
storing read block: DATA
storing read block: MRBAYES
../../test/roundTripNCLTest.py : Call to /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate/NEXUStranslate succeeded for /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test/TranslateIn/bglobin.nex
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
Making check in test
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
make -j1 install DESTDIR=/build/reproducible-path/libncl-2.1.21\+git20210811.b1213a7/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
Making install in ncl
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu'
/bin/sh ../libtool --mode=install /usr/bin/install -c libncl.la '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/libncl.so.2.0.0 /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0
libtool: install: (cd /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so.2 || { rm -f libncl.so.2 && ln -s libncl.so.2.0.0 libncl.so.2; }; })
libtool: install: (cd /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libncl.so.2.0.0 libncl.so || { rm -f libncl.so && ln -s libncl.so.2.0.0 libncl.so; }; })
libtool: install: /usr/bin/install -c .libs/libncl.lai /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la
libtool: install: /usr/bin/install -c .libs/libncl.a /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a
libtool: install: chmod 644 /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a
libtool: install: ranlib /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a
libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/include/ncl'
/usr/bin/install -c -m 644 ncl.h nxsallocatematrix.h nxsassumptionsblock.h nxsblock.cpp nxsblock.h nxscharactersblock.h nxscdiscretematrix.h nxscxxdiscretematrix.h nxsdatablock.h nxsdefs.h nxsdiscretedatum.h nxsdistancedatum.h nxsdistancesblock.h nxsexception.h nxsmultiformat.h nxspublicblocks.h nxsreader.h nxssetreader.h nxsstring.h nxstaxablock.h nxstaxaassociationblock.h nxstoken.h nxstreesblock.h nxsunalignedblock.h nxsutilcopy.h '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/include/ncl'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/ncl'
Making install in example
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
Making install in basiccmdline
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/basiccmdline'
Making install in check-taxo-nodes
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c checktaxonnodes '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/checktaxonnodes /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/checktaxonnodes
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/check-taxo-nodes'
Making install in compressor
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/compressor'
Making install in find-unsupported-edges
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c findunsupportededges '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/findunsupportededges /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/findunsupportededges
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/find-unsupported-edges'
Making install in gapcode
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/gapcode'
Making install in nclsimplest
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/nclsimplest'
Making install in ncltest
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ncltest'
Making install in normalizer
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c NEXUSnormalizer NEXUSvalidator NCLconverter '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/NEXUSnormalizer /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/NEXUSnormalizer
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/NEXUSvalidator /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/NEXUSvalidator
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/NCLconverter /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/NCLconverter
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/normalizer'
Making install in ot-subtree
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c otsubtree '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/otsubtree /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/otsubtree
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-subtree'
Making install in ot-tree-inspect
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c otTreeInspect '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/otTreeInspect /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/otTreeInspect
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/ot-tree-inspect'
Making install in outdeg1count
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c outdeg1count '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin'
libtool: warning: '../../ncl/libncl.la' has not been installed in '/usr/lib/x86_64-linux-gnu'
libtool: install: /usr/bin/install -c .libs/outdeg1count /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/bin/outdeg1count
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/outdeg1count'
Making install in patristic
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/patristic'
Making install in phylobaseinterface
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/phylobaseinterface'
Making install in polytomy-count
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/polytomy-count'
Making install in splitsinfile
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/splitsinfile'
Making install in subsetter
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/subsetter'
Making install in translate
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example/translate'
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[4]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/example'
Making install in test
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/test'
make[2]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[3]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[3]: Nothing to be done for 'install-exec-am'.
/usr/bin/mkdir -p '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig'
/usr/bin/install -c -m 644 nclv2.1.pc '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig'
make[3]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[2]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
debian/rules override_dh_install
make[1]: Entering directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--movedev "debian/tmp/usr/include/ncl/*.h" usr/include/ncl \
--movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \
debian/tmp/usr/lib/*/libncl.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu
install -d -m 755 debian/libncl2/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.a debian/libncl-dev/usr/lib/x86_64-linux-gnu
mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.la debian/libncl-dev/usr/lib/x86_64-linux-gnu || true
mv debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so debian/libncl-dev/usr/lib/x86_64-linux-gnu
mv /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2 debian/libncl2/usr/lib/x86_64-linux-gnu
mv /build/reproducible-path/libncl-2.1.21+git20210811.b1213a7/debian/tmp/usr/lib/x86_64-linux-gnu/libncl.so.2.0.0 debian/libncl2/usr/lib/x86_64-linux-gnu
PKGDEV=libncl-dev
PKGSHL=libncl2
install -d -m 755 debian/libncl-dev/usr/include/ncl
mv debian/tmp/usr/include/ncl/*.h debian/libncl-dev/usr/include/ncl
install -d -m 755 debian/libncl-dev/usr/lib/x86_64-linux-gnu/pkgconfig
mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libncl-dev/usr/lib/x86_64-linux-gnu/pkgconfig
rm -f debian/tmp/usr/include/ncl/nxsblock.cpp
make[1]: Leaving directory '/build/reproducible-path/libncl-2.1.21+git20210811.b1213a7'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: warning: debian/libncl2/DEBIAN/symbols doesn't match completely debian/libncl2.symbols.amd64
--- debian/libncl2.symbols.amd64 (libncl2_2.1.21+git20210811.b1213a7-6_amd64)
+++ dpkg-gensymbolsMN95FS 2026-03-30 20:24:10.011675737 +1400
@@ -1,7 +1,7 @@
libncl.so.2 libncl2 #MINVER#
* Build-Depends-Package: libncl-dev
_Z10fileExistsRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_Z15DeleteTwoDArrayIaEvRPPT_@Base 2.1.18
_Z15parseNHXCommentNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3mapIS4_S4_St4lessIS4_ESaISt4pairIKS4_S4_EEE@Base 2.1.18
_Z16disambiguateNameRKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessIS5_ESaISt4pairIKS5_jEEERKSt3setIjS6_IjESaIjEER9NxsStringPKcb@Base 2.1.21+git20171002.4becff7
_Z18NxsWriteSetCommandPKcRKSt3mapI9NxsStringSt3setIjSt4lessIjESaIjEES4_IS2_ESaISt4pairIKS2_S7_EEERSoS0_@Base 2.1.18
@@ -29,9 +29,9 @@
_ZN12NxsDataBlock5ResetEv@Base 2.1.18
_ZN12NxsDataBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18
_ZN12NxsDataBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18
- (optional)_ZN12NxsDataBlockD0Ev@Base 2.1.18
- (optional)_ZN12NxsDataBlockD1Ev@Base 2.1.18
- (optional)_ZN12NxsDataBlockD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsDataBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsDataBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsDataBlockD2Ev@Base 2.1.18
_ZN12NxsException15addPositionInfoERK15NxsTokenPosInfo@Base 2.1.18
_ZN12NxsException15addPositionInfoERK17ProcessedNxsToken@Base 2.1.18
_ZN12NxsException15addPositionInfoERK8NxsToken@Base 2.1.18
@@ -40,15 +40,15 @@
_ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18
_ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18
_ZN12NxsExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18
- (optional)_ZN12NxsExceptionC1ERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionC1ERKS_@Base 2.1.18
_ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK15NxsTokenPosInfo@Base 2.1.18
_ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18
_ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18
_ZN12NxsExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4fposI11__mbstate_tEll@Base 2.1.18
- (optional)_ZN12NxsExceptionC2ERKS_@Base 2.1.18
- (optional)_ZN12NxsExceptionD0Ev@Base 2.1.18
- (optional)_ZN12NxsExceptionD1Ev@Base 2.1.18
- (optional)_ZN12NxsExceptionD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionC2ERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsExceptionD2Ev@Base 2.1.18
_ZN12NxsSetReader13AddRangeToSetEjjjPSt3setIjSt4lessIjESaIjEEPKS4_R8NxsToken@Base 2.1.18
_ZN12NxsSetReader13GetTokenValueEv@Base 2.1.18
_ZN12NxsSetReader14GetSetAsVectorERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
@@ -60,15 +60,15 @@
_ZN12NxsSetReaderC1ER8NxsTokenjRSt3setIjSt4lessIjESaIjEER8NxsBlockj@Base 2.1.18
_ZN12NxsSetReaderC2ER8NxsTokenjRSt3setIjSt4lessIjESaIjEER8NxsBlockj@Base 2.1.18
_ZN12NxsTaxaBlock11NeedsQuotesEj@Base 2.1.18
- (optional)_ZN12NxsTaxaBlock12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZN12NxsTaxaBlock13ActivateTaxonEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock13ActivateTaxonEj@Base 2.1.18
_ZN12NxsTaxaBlock13AddTaxonLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN12NxsTaxaBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZN12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_ZN12NxsTaxaBlock14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZN12NxsTaxaBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
_ZN12NxsTaxaBlock15HandleTaxLabelsER8NxsToken@Base 2.1.18
- (optional)_ZN12NxsTaxaBlock15InactivateTaxonEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN12NxsTaxaBlock15InactivateTaxonEj@Base 2.1.18
_ZN12NxsTaxaBlock16ChangeTaxonLabelEj9NxsString@Base 2.1.18
_ZN12NxsTaxaBlock16IsAlreadyDefinedERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN12NxsTaxaBlock16RemoveTaxonLabelEj@Base 2.1.18
@@ -84,54 +84,54 @@
_ZN13NxsSimpleEdge21DealWithNexusCommentsERKSt6vectorI10NxsCommentSaIS1_EEb@Base 2.1.18
_ZN13NxsSimpleNode14FindTaxonIndexEj@Base 2.1.18
_ZN13NxsSimpleTree10InitializeERK22NxsFullTreeDescriptionb@Base 2.1.21+git20171002.4becff7
- (optional)_ZN13NxsSimpleTree12AllocNewNodeEP13NxsSimpleNode@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsSimpleTree12AllocNewNodeEP13NxsSimpleNode@Base 2.1.18
_ZN13NxsSimpleTree12RerootAtNodeEP13NxsSimpleNode@Base 2.1.18
_ZN13NxsSimpleTree20FlipRootsChildToRootEP13NxsSimpleNode@Base 2.1.18
_ZN13NxsSimpleTree8RerootAtEj@Base 2.1.18
- (optional)_ZN13NxsSimpleTreeD1Ev@Base 2.1.18
- (optional)_ZN13NxsSimpleTreeD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsSimpleTreeD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsSimpleTreeD2Ev@Base 2.1.18
_ZN13NxsTreesBlock11GetNumTreesEv@Base 2.1.18
_ZN13NxsTreesBlock11GetTreeNameEj@Base 2.1.18
_ZN13NxsTreesBlock12IsRootedTreeEj@Base 2.1.18
_ZN13NxsTreesBlock13IsDefaultTreeEj@Base 2.1.18
_ZN13NxsTreesBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZN13NxsTreesBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
- (optional)_ZN13NxsTreesBlock16GetImpliedBlocksEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock16GetImpliedBlocksEv@Base 2.1.18
_ZN13NxsTreesBlock17GetNumDefaultTreeEv@Base 2.1.18
- (optional)_ZN13NxsTreesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
_ZN13NxsTreesBlock17HandleTreeCommandER8NxsTokenb@Base 2.1.18
_ZN13NxsTreesBlock18GetTreeDescriptionEj@Base 2.1.18
_ZN13NxsTreesBlock18ReadPhylipTreeFileER8NxsToken@Base 2.1.18
_ZN13NxsTreesBlock19ReplaceTaxaBlockPtrEP15NxsTaxaBlockAPI@Base 2.1.18
- (optional)_ZN13NxsTreesBlock22CopyTreesBlockContentsERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock22CopyTreesBlockContentsERKS_@Base 2.1.18
_ZN13NxsTreesBlock22HandleTranslateCommandER8NxsToken@Base 2.1.18
_ZN13NxsTreesBlock23ProcessTokenVecIntoTreeERKSt6vectorI17ProcessedNxsTokenSaIS1_EER22NxsFullTreeDescriptionP23NxsLabelToIndicesMapperRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessISG_ESaISt4pairIKSG_jEEEbP9NxsReaderbbbbb@Base 2.1.21+git20171002.4becff7
- (optional)_ZN13NxsTreesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN13NxsTreesBlock26ProcessTokenStreamIntoTreeER8NxsTokenR22NxsFullTreeDescriptionP23NxsLabelToIndicesMapperRSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessISC_ESaISt4pairIKSC_jEEEbP9NxsReaderbbbbbb@Base 2.1.21+git20171002.4becff7
_ZN13NxsTreesBlock27ReadTreeFromOpenParensTokenER22NxsFullTreeDescriptionR8NxsToken@Base 2.1.18
_ZN13NxsTreesBlock28GetTranslatedTreeDescriptionEj@Base 2.1.18
_ZN13NxsTreesBlock30ConstructDefaultTranslateTableER8NxsTokenPKc@Base 2.1.18
_ZN13NxsTreesBlock4ReadER8NxsToken@Base 2.1.18
_ZN13NxsTreesBlock5ResetEv@Base 2.1.18
- (optional)_ZN13NxsTreesBlock8SetNexusEP9NxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN13NxsTreesBlock8SetNexusEP9NxsReader@Base 2.1.18
_ZN13NxsTreesBlockC1EP15NxsTaxaBlockAPI@Base 2.1.18
_ZN13NxsTreesBlockC2EP15NxsTaxaBlockAPI@Base 2.1.18
_ZN13NxsTreesBlockD0Ev@Base 2.1.18
_ZN13NxsTreesBlockD1Ev@Base 2.1.18
_ZN13NxsTreesBlockD2Ev@Base 2.1.18
- (optional)_ZN15NxsBlockFactory10BlockErrorEP8NxsBlock@Base 2.1.18
- (optional)_ZN15NxsBlockFactory12BlockSkippedEP8NxsBlock@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN15NxsBlockFactory10BlockErrorEP8NxsBlock@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN15NxsBlockFactory12BlockSkippedEP8NxsBlock@Base 2.1.18
_ZN15NxsCodonTripletC1EPKc@Base 2.1.18
_ZN15NxsCodonTripletC2EPKc@Base 2.1.18
- (optional)_ZN16BogusToIndMapper14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZN16BogusToIndMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_ZN16BogusToIndMapper15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
- (optional)_ZN16BogusToIndMapperD0Ev@Base 2.1.18
- (optional)_ZN16BogusToIndMapperD1Ev@Base 2.1.18
- (optional)_ZN16BogusToIndMapperD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapper14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapper15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapperD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapperD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16BogusToIndMapperD2Ev@Base 2.1.18
_ZN16FileToCharBuffer12refillBufferEm@Base 2.1.21+git20171002.4becff7
_ZN16FileToCharBuffer25skip_to_beginning_of_lineERc@Base 2.1.18
- (optional)_ZN16FileToCharBuffer7advanceEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN16FileToCharBuffer7advanceEv@Base 2.1.18
_ZN16FileToCharBufferC1ERSi@Base 2.1.18
_ZN16FileToCharBufferC2ERSi@Base 2.1.18
_ZN17MultiFormatReader10ReadStreamERSiNS_14DataFormatTypeEPKc@Base 2.1.18
@@ -159,17 +159,17 @@
_ZN17NxsDistancesBlock10SetMissingEjj@Base 2.1.18
_ZN17NxsDistancesBlock11SetDistanceEjjd@Base 2.1.18
_ZN17NxsDistancesBlock14HandleNextPassER8NxsTokenRjRSt6vectorIjSaIjEERSt3setIjSt4lessIjES4_E@Base 2.1.18
- (optional)_ZN17NxsDistancesBlock16GetImpliedBlocksEv@Base 2.1.18
- (optional)_ZN17NxsDistancesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock16GetImpliedBlocksEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
_ZN17NxsDistancesBlock19HandleFormatCommandER8NxsToken@Base 2.1.18
_ZN17NxsDistancesBlock19HandleMatrixCommandER8NxsToken@Base 2.1.18
_ZN17NxsDistancesBlock21CopyDistancesContentsERKS_@Base 2.1.18
_ZN17NxsDistancesBlock23HandleDimensionsCommandER8NxsToken@Base 2.1.18
- (optional)_ZN17NxsDistancesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN17NxsDistancesBlock4ReadER8NxsToken@Base 2.1.18
_ZN17NxsDistancesBlock5ResetEv@Base 2.1.18
_ZN17NxsDistancesBlock8SetNcharEj@Base 2.1.18
- (optional)_ZN17NxsDistancesBlock8SetNexusEP9NxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsDistancesBlock8SetNexusEP9NxsReader@Base 2.1.18
_ZN17NxsDistancesBlockC1EP15NxsTaxaBlockAPI@Base 2.1.18
_ZN17NxsDistancesBlockC2EP15NxsTaxaBlockAPI@Base 2.1.18
_ZN17NxsDistancesBlockD0Ev@Base 2.1.18
@@ -184,17 +184,17 @@
_ZN17NxsUnalignedBlock14HandleEndblockER8NxsToken@Base 2.1.18
_ZN17NxsUnalignedBlock14IsMissingStateEjj@Base 2.1.18
_ZN17NxsUnalignedBlock15HandleNextStateER8NxsTokenjjRSt6vectorIiSaIiEERK9NxsString@Base 2.1.18
- (optional)_ZN17NxsUnalignedBlock16GetImpliedBlocksEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock16GetImpliedBlocksEv@Base 2.1.18
_ZN17NxsUnalignedBlock16HandleDimensionsER8NxsToken@Base 2.1.18
_ZN17NxsUnalignedBlock16NumCharsForTaxonEj@Base 2.1.18
- (optional)_ZN17NxsUnalignedBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
_ZN17NxsUnalignedBlock19ResetDatatypeMapperEv@Base 2.1.18
- (optional)_ZN17NxsUnalignedBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN17NxsUnalignedBlock25GetInternalRepresentationEjj@Base 2.1.18
- (optional)_ZN17NxsUnalignedBlock26CopyUnalignedBlockContentsERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock26CopyUnalignedBlockContentsERKS_@Base 2.1.18
_ZN17NxsUnalignedBlock4ReadER8NxsToken@Base 2.1.18
_ZN17NxsUnalignedBlock5ResetEv@Base 2.1.18
- (optional)_ZN17NxsUnalignedBlock8SetNexusEP9NxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17NxsUnalignedBlock8SetNexusEP9NxsReader@Base 2.1.18
_ZN17NxsUnalignedBlockC1EP15NxsTaxaBlockAPI@Base 2.1.18
_ZN17NxsUnalignedBlockC2EP15NxsTaxaBlockAPI@Base 2.1.18
_ZN17NxsUnalignedBlockD0Ev@Base 2.1.18
@@ -203,12 +203,12 @@
_ZN17ProcessedNxsToken14ParseSimpleCmdERKSt6vectorIS_SaIS_EEb@Base 2.1.18
_ZN17ProcessedNxsToken16IncrementNotLastERN9__gnu_cxx17__normal_iteratorIPKS_St6vectorIS_SaIS_EEEERKS7_PKc@Base 2.1.18
_ZN17PublicNexusReader10AddFactoryEP15NxsBlockFactory@Base 2.1.18
- (optional)_ZN17PublicNexusReader12ClearContentEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17PublicNexusReader12ClearContentEv@Base 2.1.18
_ZN17PublicNexusReader12RegisterTaxaERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EE@Base 2.1.18
_ZN17PublicNexusReader15PostExecuteHookEv@Base 2.1.18
_ZN17PublicNexusReader16parseFileOrThrowB5cxx11EPKcN9NxsReader19WarningHandlingModeEbb@Base 2.1.18
_ZN17PublicNexusReader18ClearUsedBlockListEv@Base 2.1.18
- (optional)_ZN17PublicNexusReader25DeleteBlocksFromFactoriesEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN17PublicNexusReader25DeleteBlocksFromFactoriesEv@Base 2.1.18
_ZN17PublicNexusReader7ExecuteER8NxsTokenb@Base 2.1.18
_ZN17PublicNexusReaderC1EiN9NxsReader19WarningHandlingModeE@Base 2.1.18
_ZN17PublicNexusReaderC2EiN9NxsReader19WarningHandlingModeE@Base 2.1.18
@@ -226,7 +226,7 @@
_ZN18NxsCharactersBlock15HandleEliminateER8NxsToken@Base 2.1.18
_ZN18NxsCharactersBlock15HandleStdMatrixER8NxsToken@Base 2.1.18
_ZN18NxsCharactersBlock16ExcludeCharacterEj@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock16GetImpliedBlocksEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock16GetImpliedBlocksEv@Base 2.1.18
_ZN18NxsCharactersBlock16HandleCharlabelsER8NxsToken@Base 2.1.18
_ZN18NxsCharactersBlock16HandleDimensionsER8NxsToken9NxsStringS2_S2_@Base 2.1.18
_ZN18NxsCharactersBlock16HandleTokenStateER8NxsTokenjjR25NxsDiscreteDatatypeMapperPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18
@@ -234,9 +234,9 @@
_ZN18NxsCharactersBlock16RemoveStopCodonsE19NxsGeneticCodesEnum@Base 2.1.18
_ZN18NxsCharactersBlock17GetDefaultEquatesENS_13DataTypesEnumE@Base 2.1.18
_ZN18NxsCharactersBlock17GetNameOfDatatypeENS_13DataTypesEnumE@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
_ZN18NxsCharactersBlock17HandleStatelabelsER8NxsToken@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock17SetGapModeSettingEN21NxsCharactersBlockAPI11GapModeEnumE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock17SetGapModeSettingEN21NxsCharactersBlockAPI11GapModeEnumE@Base 2.1.18
_ZN18NxsCharactersBlock20HandleNextTokenStateER8NxsTokenjjRSt6vectorIiSaIiEER25NxsDiscreteDatatypeMapperPKS4_RK9NxsString@Base 2.1.18
_ZN18NxsCharactersBlock21HandleCharstatelabelsER8NxsToken@Base 2.1.18
_ZN18NxsCharactersBlock22CopyCharactersContentsERKS_@Base 2.1.18
@@ -244,7 +244,7 @@
_ZN18NxsCharactersBlock23AddNewCodonPosPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18
_ZN18NxsCharactersBlock23AugmentedSymbolsToMixedEv@Base 2.1.18
_ZN18NxsCharactersBlock23HandleNextDiscreteStateER8NxsTokenjjRSt6vectorIiSaIiEER25NxsDiscreteDatatypeMapperPKS4_RK9NxsString@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN18NxsCharactersBlock24GetDefaultSymbolsForTypeB5cxx11ENS_13DataTypesEnumE@Base 2.1.18
_ZN18NxsCharactersBlock24NewCodonsCharactersBlockEPKS_bbbPKNSt7__cxx114listIiSaIiEEEPPS_@Base 2.1.18
_ZN18NxsCharactersBlock25HandleNextContinuousStateER8NxsTokenjjRSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES2_IdSaIdEESt4lessIS9_ESaISt4pairIKS9_SB_EEESaISI_EERK9NxsString@Base 2.1.18
@@ -252,27 +252,27 @@
_ZN18NxsCharactersBlock25NewProteinCharactersBlockEPKS_bbRKSt6vectorIiSaIiEE@Base 2.1.18
_ZN18NxsCharactersBlock26CodonPosPartitionToPosListERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEEPNS1_IiSaIiEEE@Base 2.1.18
_ZN18NxsCharactersBlock27CreateDatatypeMapperObjectsERKNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEERKSt6vectorINS_13DataTypesEnumESaISJ_EE@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock31GetMutableDatatypeMapperForCharEj@Base 2.1.18
_ZN18NxsCharactersBlock4ReadER8NxsToken@Base 2.1.18
_ZN18NxsCharactersBlock5ResetEv@Base 2.1.18
_ZN18NxsCharactersBlock7ConsumeERS_@Base 2.1.18
- (optional)_ZN18NxsCharactersBlock8SetNexusEP9NxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlock8SetNexusEP9NxsReader@Base 2.1.18
_ZN18NxsCharactersBlockC1EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18
_ZN18NxsCharactersBlockC2EP15NxsTaxaBlockAPIP22NxsAssumptionsBlockAPI@Base 2.1.18
- (optional)_ZN18NxsCharactersBlockD0Ev@Base 2.1.18
- (optional)_ZN18NxsCharactersBlockD1Ev@Base 2.1.18
- (optional)_ZN18NxsCharactersBlockD2Ev@Base 2.1.18
- (optional)_ZN18NxsNCLAPIExceptionD0Ev@Base 2.1.18
- (optional)_ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18
- (optional)_ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsCharactersBlockD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsNCLAPIExceptionD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsNCLAPIExceptionD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsNCLAPIExceptionD2Ev@Base 2.1.18
_ZN18NxsX_UnexpectedEOFC1ER8NxsToken@Base 2.1.18
_ZN18NxsX_UnexpectedEOFC2ER8NxsToken@Base 2.1.18
- (optional)_ZN18NxsX_UnexpectedEOFD0Ev@Base 2.1.18
- (optional)_ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18
- (optional)_ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18
- (optional)_ZN19CodonRecodingStructD1Ev@Base 2.1.18
- (optional)_ZN19CodonRecodingStructD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsX_UnexpectedEOFD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsX_UnexpectedEOFD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN18NxsX_UnexpectedEOFD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19CodonRecodingStructD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19CodonRecodingStructD2Ev@Base 2.1.18
_ZN19NxsAssumptionsBlock10AddCodeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18
_ZN19NxsAssumptionsBlock10ApplyExsetE9NxsString@Base 2.1.18
_ZN19NxsAssumptionsBlock11HandleExSetER8NxsToken@Base 2.1.18
@@ -303,29 +303,29 @@
_ZN19NxsAssumptionsBlock16AddCharPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
_ZN19NxsAssumptionsBlock16AddTreePartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
_ZN19NxsAssumptionsBlock16CanReadBlockTypeERK8NxsToken@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock16GetImpliedBlocksEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock16GetImpliedBlocksEv@Base 2.1.18
_ZN19NxsAssumptionsBlock16GetTreesBlockPtrEPi@Base 2.1.18
_ZN19NxsAssumptionsBlock16SetTreesBlockPtrEP16NxsTreesBlockAPIN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18
_ZN19NxsAssumptionsBlock17HandleCodonPosSetER8NxsToken@Base 2.1.18
_ZN19NxsAssumptionsBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
_ZN19NxsAssumptionsBlock17SetCharLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock17SetGapsAsNewstateEb@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock17SetGapsAsNewstateEb@Base 2.1.18
_ZN19NxsAssumptionsBlock17SetTaxaLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18
_ZN19NxsAssumptionsBlock18HandleTaxPartitionER8NxsToken@Base 2.1.18
_ZN19NxsAssumptionsBlock18SetTreesLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock19FlagCharBlockAsUsedEv@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock19FlagTaxaBlockAsUsedEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock19FlagCharBlockAsUsedEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock19FlagTaxaBlockAsUsedEv@Base 2.1.18
_ZN19NxsAssumptionsBlock19HandleCharPartitionER8NxsToken@Base 2.1.18
_ZN19NxsAssumptionsBlock19HandleTreePartitionER8NxsToken@Base 2.1.18
_ZN19NxsAssumptionsBlock19ReplaceTaxaBlockPtrEP15NxsTaxaBlockAPI@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock20FlagTreesBlockAsUsedEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock20FlagTreesBlockAsUsedEv@Base 2.1.18
_ZN19NxsAssumptionsBlock20GetCreatedTaxaBlocksEv@Base 2.1.18
_ZN19NxsAssumptionsBlock20GetNumCharPartitionsEv@Base 2.1.18
_ZN19NxsAssumptionsBlock21GetCharPartitionNamesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EE@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock23CopyAssumptionsContentsERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock23CopyAssumptionsContentsERKS_@Base 2.1.18
_ZN19NxsAssumptionsBlock25CreateNewAssumptionsBlockER8NxsToken@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock28GetNxsGeneticCodesManagerRefEv@Base 2.1.18
- (optional)_ZN19NxsAssumptionsBlock30GetNxsTransformationManagerRefEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock28GetNxsGeneticCodesManagerRefEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsAssumptionsBlock30GetNxsTransformationManagerRefEv@Base 2.1.18
_ZN19NxsAssumptionsBlock31GetAssumptionsBlockForCharBlockEP21NxsCharactersBlockAPIN8NxsBlock18NxsBlockLinkStatusER8NxsToken@Base 2.1.18
_ZN19NxsAssumptionsBlock31GetAssumptionsBlockForCharTitleEPKcR8NxsTokenS1_@Base 2.1.18
_ZN19NxsAssumptionsBlock31GetAssumptionsBlockForTaxaBlockEP15NxsTaxaBlockAPIN8NxsBlock18NxsBlockLinkStatusER8NxsToken@Base 2.1.18
@@ -343,63 +343,63 @@
_ZN19NxsAssumptionsBlockD1Ev@Base 2.1.18
_ZN19NxsAssumptionsBlockD2Ev@Base 2.1.18
_ZN19NxsDataBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN19NxsDataBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsDataBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsDataBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsDataBlockFactoryD2Ev@Base 2.1.18
_ZN19NxsTaxaBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN19NxsTaxaBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsTaxaBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsTaxaBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN19NxsTaxaBlockFactoryD2Ev@Base 2.1.18
_ZN20NxsCXXDiscreteMatrix10InitializeEPK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18
_ZN20NxsCXXDiscreteMatrixC1ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18
_ZN20NxsCXXDiscreteMatrixC1ERK24NxsCDiscreteMatrixStruct@Base 2.1.18
_ZN20NxsCXXDiscreteMatrixC2ERK18NxsCharactersBlockbPKSt3setIjSt4lessIjESaIjEEb@Base 2.1.18
_ZN20NxsCXXDiscreteMatrixC2ERK24NxsCDiscreteMatrixStruct@Base 2.1.18
- (optional)_ZN20NxsCloneBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN20NxsCloneBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN20NxsCloneBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsCloneBlockFactoryD2Ev@Base 2.1.18
_ZN20NxsTreesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN20NxsTreesBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18
- (optional)_ZN21NxsTaxaBlockSurrogate12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZN21NxsTaxaBlockSurrogate13ActivateTaxonEj@Base 2.1.18
- (optional)_ZN21NxsTaxaBlockSurrogate14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsTreesBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsTreesBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN20NxsTreesBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate12ActivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate13ActivateTaxonEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate14InactivateTaxaERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate14ResetSurrogateEv@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate15AssureTaxaBlockEbR8NxsTokenPKc@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate15HandleTaxLabelsER8NxsToken@Base 2.1.18
- (optional)_ZN21NxsTaxaBlockSurrogate15InactivateTaxonEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate15InactivateTaxonEj@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate15SetTaxaBlockPtrEP15NxsTaxaBlockAPIN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate17SetTaxaLinkStatusEN8NxsBlock18NxsBlockLinkStatusE@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate20GetCreatedTaxaBlocksEv@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate21HandleLinkTaxaCommandER8NxsToken@Base 2.1.18
- (optional)_ZN21NxsTaxaBlockSurrogate30CopyTaxaBlockSurrogateContentsERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN21NxsTaxaBlockSurrogate30CopyTaxaBlockSurrogateContentsERKS_@Base 2.1.18
_ZN21NxsTaxaBlockSurrogate32SurrogateSwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN22NxsGeneticCodesManagerC1Ev@Base 2.1.18
_ZN22NxsGeneticCodesManagerC2Ev@Base 2.1.18
- (optional)_ZN23NxsLabelToIndicesMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsLabelToIndicesMapper14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN23NxsLabelToIndicesMapper18GetIndicesFromSetsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEE@Base 2.1.18
_ZN23NxsLabelToIndicesMapper25allowNumberAsIndexPlusOneE@Base 2.1.18
_ZN23NxsLabelToIndicesMapper27GetIndicesFromSetOrAsNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEERKSt3mapI9NxsStringSC_S9_ISF_ESaISt4pairIKSF_SC_EEEjPKc@Base 2.1.18
- (optional)_ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18
- (optional)_ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18
- (optional)_ZN23NxsTaxaAssociationBlock14AddAssociationEjRKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsSimpleCommandStringsD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsSimpleCommandStringsD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlock14AddAssociationEjRKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZN23NxsTaxaAssociationBlock17HandleTaxaCommandER8NxsToken@Base 2.1.18
- (optional)_ZN23NxsTaxaAssociationBlock17SetFirstTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
- (optional)_ZN23NxsTaxaAssociationBlock18SetSecondTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlock17SetFirstTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlock18SetSecondTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN23NxsTaxaAssociationBlock23HandleAssociatesCommandER8NxsToken@Base 2.1.18
_ZN23NxsTaxaAssociationBlock4ReadER8NxsToken@Base 2.1.18
_ZN23NxsTaxaAssociationBlock5ResetEv@Base 2.1.18
_ZN23NxsTaxaAssociationBlockC1Ev@Base 2.1.18
_ZN23NxsTaxaAssociationBlockC2Ev@Base 2.1.18
- (optional)_ZN23NxsTaxaAssociationBlockD0Ev@Base 2.1.18
- (optional)_ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18
- (optional)_ZN23NxsTaxaAssociationBlockD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN23NxsTaxaAssociationBlockD2Ev@Base 2.1.18
_ZN24NxsDistancesBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN24NxsDistancesBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsDistancesBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsDistancesBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsDistancesBlockFactoryD2Ev@Base 2.1.18
_ZN24NxsTransformationManager10AddIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK16NxsIntStepMatrix@Base 2.1.18
_ZN24NxsTransformationManager10AddTypeSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEEb@Base 2.1.18
_ZN24NxsTransformationManager11AddRealTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17NxsRealStepMatrix@Base 2.1.18
@@ -411,28 +411,28 @@
_ZN24NxsTransformationManager17GetWeightForIndexERKNSt7__cxx114listISt4pairIiSt3setIjSt4lessIjESaIjEEESaIS8_EEEj@Base 2.1.18
_ZN24NxsTransformationManager18SetDefaultTypeNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN24NxsTransformationManager5ResetEv@Base 2.1.18
- (optional)_ZN24NxsTransformationManagerD1Ev@Base 2.1.18
- (optional)_ZN24NxsTransformationManagerD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsTransformationManagerD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsTransformationManagerD2Ev@Base 2.1.18
_ZN24NxsUnalignedBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN24NxsUnalignedBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18
- (optional)_ZN24WtSetVectorItemValidator7convertB5cxx11ER8NxsToken@Base 2.1.18
- (optional)_ZN24WtSetVectorItemValidatorD0Ev@Base 2.1.18
- (optional)_ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18
- (optional)_ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18
- (optional)_ZN25ExceptionRaisingNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18
- (optional)_ZN25ExceptionRaisingNxsReader12ClearContentEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsUnalignedBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsUnalignedBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24NxsUnalignedBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidator7convertB5cxx11ER8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidatorD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidatorD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN24WtSetVectorItemValidatorD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReader12ClearContentEv@Base 2.1.18
_ZN25ExceptionRaisingNxsReader13SkippingBlockE9NxsString@Base 2.1.18
_ZN25ExceptionRaisingNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18
_ZN25ExceptionRaisingNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18
- (optional)_ZN25ExceptionRaisingNxsReaderD0Ev@Base 2.1.18
- (optional)_ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18
- (optional)_ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReaderD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReaderD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25ExceptionRaisingNxsReaderD2Ev@Base 2.1.18
_ZN25NxsCharactersBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN25NxsCharactersBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsCharactersBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsCharactersBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsCharactersBlockFactoryD2Ev@Base 2.1.18
_ZN25NxsConversionOutputRecord20writeNameTranslationESt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES7_ESaIS8_EEPK15NxsTaxaBlockAPI@Base 2.1.18
_ZN25NxsConversionOutputRecord31writeTaxonNameTranslationStreamERSoRKSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ESaIS9_EEPK15NxsTaxaBlockAPI@Base 2.1.18
_ZN25NxsConversionOutputRecord32getUniqueFilenameWithLowestIndexB5cxx11EPKc@Base 2.1.18
@@ -446,60 +446,60 @@
_ZN25NxsDiscreteDatatypeMapper38StateCodeForNexusPossibleMultiStateSetEcRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEER8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperC1EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18
- (optional)_ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperC1ERKS_@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperC1Ev@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcccbRKSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcSB_EEE@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperC2EN18NxsCharactersBlock13DataTypesEnumEb@Base 2.1.18
- (optional)_ZN25NxsDiscreteDatatypeMapperC2ERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperC2ERKS_@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperC2Ev@Base 2.1.18
- (optional)_ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18
- (optional)_ZN25NxsDiscreteDatatypeMapperD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsDiscreteDatatypeMapperD2Ev@Base 2.1.18
_ZN25NxsDiscreteDatatypeMapperaSERKS_@Base 2.1.18
_ZN25NxsStoreTokensBlockReader11ReadCommandER8NxsToken@Base 2.1.18
- (optional)_ZN25NxsStoreTokensBlockReader16CanReadBlockTypeERK8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReader16CanReadBlockTypeERK8NxsToken@Base 2.1.18
_ZN25NxsStoreTokensBlockReader4ReadER8NxsToken@Base 2.1.18
_ZN25NxsStoreTokensBlockReader5ResetEv@Base 2.1.18
- (optional)_ZN25NxsStoreTokensBlockReaderD0Ev@Base 2.1.18
- (optional)_ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18
- (optional)_ZN25NxsStoreTokensBlockReaderD2Ev@Base 2.1.18
- (optional)_ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18
- (optional)_ZN25NxsUnimplementedExceptionC2E9NxsString@Base 2.1.18
- (optional)_ZN25NxsUnimplementedExceptionD0Ev@Base 2.1.18
- (optional)_ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18
- (optional)_ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReaderD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReaderD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsStoreTokensBlockReaderD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionC1E9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionC2E9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN25NxsUnimplementedExceptionD2Ev@Base 2.1.18
_ZN26NxsAssumptionsBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN26NxsAssumptionsBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReader13EnteringBlockE9NxsString@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReader13SkippingBlockE9NxsString@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN26NxsAssumptionsBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN26NxsAssumptionsBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN26NxsAssumptionsBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader13EnteringBlockE9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader13SkippingBlockE9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader21SkippingDisabledBlockE9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEN9NxsReader12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18
_ZN27DefaultErrorReportNxsReader9parseFileB5cxx11EPKcPSoS2_bb@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReaderD0Ev@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18
- (optional)_ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18
- (optional)_ZN27DuplicatedLabelNxsExceptionD0Ev@Base 2.1.18
- (optional)_ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18
- (optional)_ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReaderD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReaderD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DefaultErrorReportNxsReaderD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DuplicatedLabelNxsExceptionD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DuplicatedLabelNxsExceptionD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN27DuplicatedLabelNxsExceptionD2Ev@Base 2.1.18
_ZN28NxsDefaultPublicBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN28NxsDefaultPublicBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN28NxsDefaultPublicBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN28NxsDefaultPublicBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN28NxsDefaultPublicBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN28NxsDefaultPublicBlockFactoryD2Ev@Base 2.1.18
_ZN30NxsTaxaAssociationBlockFactory19GetBlockReaderForIDERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEP9NxsReaderP8NxsToken@Base 2.1.18
- (optional)_ZN30NxsTaxaAssociationBlockFactoryD0Ev@Base 2.1.18
- (optional)_ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18
- (optional)_ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN30NxsTaxaAssociationBlockFactoryD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN30NxsTaxaAssociationBlockFactoryD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN30NxsTaxaAssociationBlockFactoryD2Ev@Base 2.1.18
_ZN31NxsSignalCanceledParseExceptionC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN31NxsSignalCanceledParseExceptionC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_ZN31NxsSignalCanceledParseExceptionD0Ev@Base 2.1.18
- (optional)_ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18
- (optional)_ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN31NxsSignalCanceledParseExceptionD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN31NxsSignalCanceledParseExceptionD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN31NxsSignalCanceledParseExceptionD2Ev@Base 2.1.18
_ZN8NxsBlock11SkipCommandER8NxsToken@Base 2.1.18
_ZN8NxsBlock14HandleEndblockER8NxsToken@Base 2.1.18
_ZN8NxsBlock15SkippingCommandE9NxsString@Base 2.1.18
- (optional)_ZN8NxsBlock16CanReadBlockTypeERK8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock16CanReadBlockTypeERK8NxsToken@Base 2.1.18
_ZN8NxsBlock16GetImpliedBlocksEv@Base 2.1.18
_ZN8NxsBlock16ReadPartitionDefERNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEER23NxsLabelToIndicesMapperRKS7_PKcSM_R8NxsTokenbbb@Base 2.1.18
_ZN8NxsBlock17HandleLinkCommandER8NxsToken@Base 2.1.18
@@ -508,15 +508,15 @@
_ZN8NxsBlock20SetImplementsLinkAPIEb@Base 2.1.18
_ZN8NxsBlock20WarnDangerousContentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK17ProcessedNxsToken@Base 2.1.18
_ZN8NxsBlock20WarnDangerousContentERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERK8NxsToken@Base 2.1.18
- (optional)_ZN8NxsBlock21CopyBaseBlockContentsERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock21CopyBaseBlockContentsERKS_@Base 2.1.18
_ZN8NxsBlock22ReadVectorPartitionDefERNSt7__cxx114listISt4pairINS0_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISD_EEER23NxsLabelToIndicesMapperRKS7_PKcSM_R8NxsTokenbbR25NxsSetVectorItemValidator@Base 2.1.18
- (optional)_ZN8NxsBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock23SwapEquivalentTaxaBlockEP15NxsTaxaBlockAPI@Base 2.1.18
_ZN8NxsBlock24HandleBasicBlockCommandsER8NxsToken@Base 2.1.18
_ZN8NxsBlock4ReadER8NxsToken@Base 2.1.18
_ZN8NxsBlock5ResetEv@Base 2.1.18
_ZN8NxsBlock6EnableEv@Base 2.1.18
_ZN8NxsBlock7DisableEv@Base 2.1.18
- (optional)_ZN8NxsBlock8SetNexusEP9NxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsBlock8SetNexusEP9NxsReader@Base 2.1.18
_ZN8NxsBlockC1Ev@Base 2.1.18
_ZN8NxsBlockC2Ev@Base 2.1.18
_ZN8NxsBlockD0Ev@Base 2.1.18
@@ -526,8 +526,8 @@
_ZN8NxsToken11NeedsQuotesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN8NxsToken12AbbreviationE9NxsString@Base 2.1.18
_ZN8NxsToken12GetNextTokenEv@Base 2.1.18
- (optional)_ZN8NxsToken13IsPunctuationEc@Base 2.1.21+git20210811.b1213a7
- (optional)_ZN8NxsToken13OutputCommentERK9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsToken13IsPunctuationEc@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN8NxsToken13OutputCommentERK9NxsString@Base 2.1.18
_ZN8NxsToken15StripWhitespaceEv@Base 2.1.18
_ZN8NxsToken16ProcessAsCommandEPSt6vectorI17ProcessedNxsTokenSaIS1_EE@Base 2.1.18
_ZN8NxsToken17DemandPositiveIntERS_R9NxsStringPKc@Base 2.1.18
@@ -550,7 +550,7 @@
_ZN8NxsTokenD2Ev@Base 2.1.18
_ZN9NxsReader10AddFactoryEP15NxsBlockFactory@Base 2.1.18
_ZN9NxsReader10NexusErrorE9NxsStringSt4fposI11__mbstate_tEll@Base 2.1.18
- (optional)_ZN9NxsReader12AddReadBlockERK9NxsStringP8NxsBlock@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsReader12AddReadBlockERK9NxsStringP8NxsBlock@Base 2.1.18
_ZN9NxsReader12ClearContentEv@Base 2.1.18
_ZN9NxsReader12DemoteBlocksEi@Base 2.1.18
_ZN9NxsReader12ExecuteBlockER8NxsTokenRK9NxsStringP8NxsBlockP15NxsBlockFactory@Base 2.1.18
@@ -563,7 +563,7 @@
_ZN9NxsReader13SkippingBlockE9NxsString@Base 2.1.18
_ZN9NxsReader14BlockListEmptyEv@Base 2.1.18
_ZN9NxsReader14NCLHomePageURLEv@Base 2.1.18
- (optional)_ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsReader14NexusWarnTokenERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelERK8NxsToken@Base 2.1.18
_ZN9NxsReader14ReadFilestreamERSi@Base 2.1.18
_ZN9NxsReader15ExecuteStartingEv@Base 2.1.18
_ZN9NxsReader15ExecuteStoppingEv@Base 2.1.18
@@ -613,13 +613,13 @@
_ZN9NxsReader6DetachEP8NxsBlock@Base 2.1.18
_ZN9NxsReader7ExecuteER8NxsTokenb@Base 2.1.18
_ZN9NxsReader8ReassignEP8NxsBlockS1_@Base 2.1.18
- (optional)_ZN9NxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsReader9NexusWarnERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS_12NxsWarnLevelESt4fposI11__mbstate_tEll@Base 2.1.18
_ZN9NxsReaderC1Ev@Base 2.1.18
_ZN9NxsReaderC2Ev@Base 2.1.18
_ZN9NxsReaderD0Ev@Base 2.1.18
_ZN9NxsReaderD1Ev@Base 2.1.18
_ZN9NxsReaderD2Ev@Base 2.1.18
- (optional)_ZN9NxsString10GetEscapedERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsString10GetEscapedERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN9NxsString14add_nxs_quotesERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN9NxsString14index_in_arrayERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPPKcj@Base 2.1.18
_ZN9NxsString15RightJustifyDblEdjjb@Base 2.1.18
@@ -646,34 +646,34 @@
_ZN9NxsString8to_upperERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZN9NxsString9ShortenToEj@Base 2.1.18
_ZN9NxsString9to_doubleEPKcPd@Base 2.1.18
- (optional)_ZN9NxsStringC1EPKc@Base 2.1.18
- (optional)_ZN9NxsStringC1ERKS_@Base 2.1.18
- (optional)_ZN9NxsStringC2EPKc@Base 2.1.18
- (optional)_ZN9NxsStringC2ERKS_@Base 2.1.18
- (optional)_ZN9NxsStringpLEPKc@Base 2.1.18
- (optional)_ZN9NxsStringpLEc@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC1EPKc@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC1ERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC2EPKc@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringC2ERKS_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEPKc@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEc@Base 2.1.18
_ZN9NxsStringpLEd@Base 2.1.18
- (optional)_ZN9NxsStringpLEi@Base 2.1.18
- (optional)_ZN9NxsStringpLEl@Base 2.1.18
- (optional)_ZNK12NxsDataBlock5CloneEv@Base 2.1.18
- (optional)_ZNK12NxsException4whatEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEi@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZN9NxsStringpLEl@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsDataBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsException4whatEv@Base 2.1.18
_ZNK12NxsException8nxs_whatEv@Base 2.1.18
- (optional)_ZNK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK12NxsTaxaBlock11GetMaxIndexEv@Base 2.1.18
- (optional)_ZNK12NxsTaxaBlock12GetNTaxTotalEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock12GetNTaxTotalEv@Base 2.1.18
_ZNK12NxsTaxaBlock12WriteAsNexusERSo@Base 2.1.18
_ZNK12NxsTaxaBlock13GetTaxonLabelEj@Base 2.1.18
- (optional)_ZNK12NxsTaxaBlock13IsActiveTaxonEj@Base 2.1.18
- (optional)_ZNK12NxsTaxaBlock16GetNumActiveTaxaEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock13IsActiveTaxonEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock16GetNumActiveTaxaEv@Base 2.1.18
_ZNK12NxsTaxaBlock16TaxLabelToNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZNK12NxsTaxaBlock17GetNumTaxonLabelsEv@Base 2.1.18
_ZNK12NxsTaxaBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK12NxsTaxaBlock21WriteTaxLabelsCommandERSo@Base 2.1.18
_ZNK12NxsTaxaBlock26CheckCapitalizedTaxonLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZNK12NxsTaxaBlock27GetNumLabelsCurrentlyStoredEv@Base 2.1.18
- (optional)_ZNK12NxsTaxaBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock5CloneEv@Base 2.1.18
_ZNK12NxsTaxaBlock6ReportERSo@Base 2.1.18
- (optional)_ZNK12NxsTaxaBlock7GetNTaxEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK12NxsTaxaBlock7GetNTaxEv@Base 2.1.18
_ZNK12NxsTaxaBlock9FindTaxonERK9NxsString@Base 2.1.18
_ZNK13NxsSimpleEdge13WriteAsNewickERSob@Base 2.1.18
_ZNK13NxsSimpleNode13WriteAsNewickERSobbbPK15NxsTaxaBlockAPIb@Base 2.1.21+git20171002.4becff7
@@ -682,55 +682,55 @@
_ZNK13NxsSimpleTree19GetIntPathDistancesEb@Base 2.1.18
_ZNK13NxsSimpleTree20GetPreorderTraversalEv@Base 2.1.18
_ZNK13NxsTreesBlock11BriefReportER9NxsString@Base 2.1.18
- (optional)_ZNK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK13NxsTreesBlock11GetMaxIndexEv@Base 2.1.18
_ZNK13NxsTreesBlock11GetNumTreesEv@Base 2.1.18
_ZNK13NxsTreesBlock11ProcessTreeER22NxsFullTreeDescription@Base 2.1.18
- (optional)_ZNK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
_ZNK13NxsTreesBlock12WriteAsNexusERSo@Base 2.1.18
- (optional)_ZNK13NxsTreesBlock16WriteLinkCommandERSo@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock16WriteLinkCommandERSo@Base 2.1.18
_ZNK13NxsTreesBlock17TreeLabelToNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZNK13NxsTreesBlock17WriteTreesCommandERSo@Base 2.1.18
_ZNK13NxsTreesBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK13NxsTreesBlock21WriteTranslateCommandERSo@Base 2.1.18
_ZNK13NxsTreesBlock22GetFullTreeDescriptionEj@Base 2.1.18
- (optional)_ZNK13NxsTreesBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK13NxsTreesBlock5CloneEv@Base 2.1.18
_ZNK13NxsTreesBlock6ReportERSo@Base 2.1.18
_ZNK15NxsCodonTriplet12getSingleMutERKS_@Base 2.1.18
_ZNK15NxsTaxaBlockAPI12GetAllLabelsB5cxx11Ev@Base 2.1.18
- (optional)_ZNK16BogusToIndMapper11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZNK16BogusToIndMapper11GetMaxIndexEv@Base 2.1.18
- (optional)_ZNK16BogusToIndMapper18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK16BogusToIndMapper11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK16BogusToIndMapper11GetMaxIndexEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK16BogusToIndMapper18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK17NxsDistancesBlock10IsDiagonalEv@Base 2.1.18
_ZNK17NxsDistancesBlock11GetDistanceEjj@Base 2.1.18
_ZNK17NxsDistancesBlock11GetTriangleEv@Base 2.1.18
- (optional)_ZNK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
_ZNK17NxsDistancesBlock12IsInterleaveEv@Base 2.1.18
_ZNK17NxsDistancesBlock12WriteAsNexusERSo@Base 2.1.18
_ZNK17NxsDistancesBlock13IsRectangularEv@Base 2.1.18
_ZNK17NxsDistancesBlock16GetMissingSymbolEv@Base 2.1.18
- (optional)_ZNK17NxsDistancesBlock16WriteLinkCommandERSo@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsDistancesBlock16WriteLinkCommandERSo@Base 2.1.18
_ZNK17NxsDistancesBlock17IsLowerTriangularEv@Base 2.1.18
_ZNK17NxsDistancesBlock17IsUpperTriangularEv@Base 2.1.18
_ZNK17NxsDistancesBlock18WriteFormatCommandERSo@Base 2.1.18
_ZNK17NxsDistancesBlock18WriteMatrixCommandERSo@Base 2.1.18
- (optional)_ZNK17NxsDistancesBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsDistancesBlock5CloneEv@Base 2.1.18
_ZNK17NxsDistancesBlock6ReportERSo@Base 2.1.18
_ZNK17NxsDistancesBlock8GetNcharEv@Base 2.1.18
_ZNK17NxsDistancesBlock8IsLabelsEv@Base 2.1.18
_ZNK17NxsDistancesBlock9IsMissingEjj@Base 2.1.18
_ZNK17NxsUnalignedBlock11FormatStateB5cxx11E16NxsDiscreteDatum@Base 2.1.18
- (optional)_ZNK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
- (optional)_ZNK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18
_ZNK17NxsUnalignedBlock12WriteAsNexusERSo@Base 2.1.18
_ZNK17NxsUnalignedBlock15DebugShowMatrixERSoPKc@Base 2.1.18
_ZNK17NxsUnalignedBlock15TaxonIndHasDataEj@Base 2.1.18
- (optional)_ZNK17NxsUnalignedBlock16WriteLinkCommandERSo@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock16WriteLinkCommandERSo@Base 2.1.18
_ZNK17NxsUnalignedBlock17GetMatrixRowAsStrB5cxx11Ej@Base 2.1.18
_ZNK17NxsUnalignedBlock18WriteFormatCommandERSo@Base 2.1.18
_ZNK17NxsUnalignedBlock18WriteMatrixCommandERSo@Base 2.1.18
_ZNK17NxsUnalignedBlock23WriteStatesForMatrixRowERSoj@Base 2.1.18
- (optional)_ZNK17NxsUnalignedBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK17NxsUnalignedBlock5CloneEv@Base 2.1.18
_ZNK17NxsUnalignedBlock6ReportERSo@Base 2.1.18
_ZNK17PublicNexusReader12GetTaxaBlockEj@Base 2.1.18
_ZNK17PublicNexusReader13GetTreesBlockEPK12NxsTaxaBlockj@Base 2.1.18
@@ -754,38 +754,38 @@
_ZNK17PublicNexusReader27GetNumTaxaAssociationBlocksEPK12NxsTaxaBlock@Base 2.1.18
_ZNK18NxsCharactersBlock10IsGapStateEjj@Base 2.1.18
_ZNK18NxsCharactersBlock10ShowStatesERSojj@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK18NxsCharactersBlock11GetMaxIndexEv@Base 2.1.18
_ZNK18NxsCharactersBlock11IsInSymbolsEc@Base 2.1.18
_ZNK18NxsCharactersBlock11WriteStatesER16NxsDiscreteDatumPcj@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.18
_ZNK18NxsCharactersBlock12GetNumStatesEjj@Base 2.1.18
_ZNK18NxsCharactersBlock12WriteAsNexusERSo@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock13GetNCharTotalEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock13GetNCharTotalEv@Base 2.1.18
_ZNK18NxsCharactersBlock13IsPolymorphicEjj@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock13IsRespectCaseEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock13IsRespectCaseEv@Base 2.1.18
_ZNK18NxsCharactersBlock14IsMissingStateEjj@Base 2.1.18
_ZNK18NxsCharactersBlock15DebugShowMatrixERSobPKc@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock15GetNumObsStatesEjb@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock15GetObsNumStatesEjb@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock15GetNumObsStatesEjb@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock15GetObsNumStatesEjb@Base 2.1.18
_ZNK18NxsCharactersBlock15GetPairwiseDistEjjPKSt3setIjSt4lessIjESaIjEEbb@Base 2.1.18
_ZNK18NxsCharactersBlock15NumAmbigInTaxonEjPKSt3setIjSt4lessIjESaIjEEbb@Base 2.1.18
_ZNK18NxsCharactersBlock15ShowStateLabelsERSojjj@Base 2.1.18
_ZNK18NxsCharactersBlock16GetNumActiveCharEv@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock16WriteLinkCommandERSo@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock17CharLabelToNumberE9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock16WriteLinkCommandERSo@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock17CharLabelToNumberE9NxsString@Base 2.1.18
_ZNK18NxsCharactersBlock17CharLabelToNumberERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock17GetGapModeSettingEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock17GetGapModeSettingEv@Base 2.1.18
_ZNK18NxsCharactersBlock17GetMatrixRowAsStrB5cxx11Ej@Base 2.1.18
_ZNK18NxsCharactersBlock17GetStateLabelImplEjj@Base 2.1.18
_ZNK18NxsCharactersBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK18NxsCharactersBlock18GetMaxObsNumStatesEbb@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock18TaxonLabelToNumberE9NxsString@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock18TaxonLabelToNumberE9NxsString@Base 2.1.18
_ZNK18NxsCharactersBlock18WriteFormatCommandERSo@Base 2.1.18
_ZNK18NxsCharactersBlock18WriteMatrixCommandERSo@Base 2.1.18
_ZNK18NxsCharactersBlock20FindGappedCharactersERSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock20GetCodonPosPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock21GetAllDatatypeMappersEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock20GetCodonPosPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock21GetAllDatatypeMappersEv@Base 2.1.18
_ZNK18NxsCharactersBlock21WriteEliminateCommandERSo@Base 2.1.18
_ZNK18NxsCharactersBlock22FindConstantCharactersERSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZNK18NxsCharactersBlock22WriteCharLabelsCommandERSo@Base 2.1.18
@@ -794,10 +794,10 @@
_ZNK18NxsCharactersBlock26GetMaximalStateSetOfColumnEj@Base 2.1.18
_ZNK18NxsCharactersBlock26WriteStatesForTaxonAsNexusERSojjj@Base 2.1.18
_ZNK18NxsCharactersBlock27WriteCharStateLabelsCommandERSo@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock31GetDefaultCodonPosPartitionNameB5cxx11Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock30GetNxsTransformationManagerRefEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock31GetDefaultCodonPosPartitionNameB5cxx11Ev@Base 2.1.18
_ZNK18NxsCharactersBlock33FirstTaxonStatesAreSubsetOfSecondEjjPKSt3setIjSt4lessIjESaIjEEbb@Base 2.1.18
- (optional)_ZNK18NxsCharactersBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK18NxsCharactersBlock5CloneEv@Base 2.1.18
_ZNK18NxsCharactersBlock6ReportERSo@Base 2.1.18
_ZNK19NxsAssumptionsBlock10GetCharSetE9NxsString@Base 2.1.18
_ZNK19NxsAssumptionsBlock12WriteAsNexusERSo@Base 2.1.18
@@ -810,27 +810,27 @@
_ZNK19NxsAssumptionsBlock20HasSetsBlockCommandsEv@Base 2.1.18
_ZNK19NxsAssumptionsBlock22HasCodonsBlockCommandsEv@Base 2.1.18
_ZNK19NxsAssumptionsBlock27HasAssumptionsBlockCommandsEv@Base 2.1.18
- (optional)_ZNK19NxsAssumptionsBlock35GetNxsTransformationManagerConstRefEv@Base 2.1.18
- (optional)_ZNK19NxsAssumptionsBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK19NxsAssumptionsBlock35GetNxsTransformationManagerConstRefEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK19NxsAssumptionsBlock5CloneEv@Base 2.1.18
_ZNK19NxsAssumptionsBlock6ReportERSo@Base 2.1.18
- (optional)_ZNK21NxsTaxaBlockSurrogate12GetNTaxTotalEv@Base 2.1.18
- (optional)_ZNK21NxsTaxaBlockSurrogate13IsActiveTaxonEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate12GetNTaxTotalEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate13IsActiveTaxonEj@Base 2.1.18
_ZNK21NxsTaxaBlockSurrogate15GetTaxaBlockPtrEPi@Base 2.1.18
- (optional)_ZNK21NxsTaxaBlockSurrogate16GetNumActiveTaxaEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate16GetNumActiveTaxaEv@Base 2.1.18
_ZNK21NxsTaxaBlockSurrogate20WriteLinkTaxaCommandERSo@Base 2.1.18
- (optional)_ZNK21NxsTaxaBlockSurrogate7GetNTaxEv@Base 2.1.18
- (optional)_ZNK22NxsAssumptionsBlockAPI20GetDefaultIntWeightsEv@Base 2.1.18
- (optional)_ZNK22NxsAssumptionsBlockAPI23GetDefaultDoubleWeightsEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK21NxsTaxaBlockSurrogate7GetNTaxEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK22NxsAssumptionsBlockAPI20GetDefaultIntWeightsEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK22NxsAssumptionsBlockAPI23GetDefaultDoubleWeightsEv@Base 2.1.18
_ZNK22NxsFullTreeDescription13GetTreeTokensB5cxx11Ev@Base 2.1.18
_ZNK22NxsGeneticCodesManager15IsValidCodeNameERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
- (optional)_ZNK23NxsLabelToIndicesMapper27GetNumLabelsCurrentlyStoredEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsLabelToIndicesMapper27GetNumLabelsCurrentlyStoredEv@Base 2.1.18
_ZNK23NxsTaxaAssociationBlock12WriteAsNexusERSo@Base 2.1.18
- (optional)_ZNK23NxsTaxaAssociationBlock17GetFirstTaxaBlockEv@Base 2.1.18
- (optional)_ZNK23NxsTaxaAssociationBlock18GetSecondTaxaBlockEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock17GetFirstTaxaBlockEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock18GetSecondTaxaBlockEv@Base 2.1.18
_ZNK23NxsTaxaAssociationBlock20ProcessTaxaBlockNameERK9NxsStringR8NxsToken@Base 2.1.18
- (optional)_ZNK23NxsTaxaAssociationBlock33GetAssociatesForTaxonInFirstBlockEj@Base 2.1.18
- (optional)_ZNK23NxsTaxaAssociationBlock34GetAssociatesForTaxonInSecondBlockEj@Base 2.1.18
- (optional)_ZNK23NxsTaxaAssociationBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock33GetAssociatesForTaxonInFirstBlockEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock34GetAssociatesForTaxonInSecondBlockEj@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK23NxsTaxaAssociationBlock5CloneEv@Base 2.1.18
_ZNK23NxsTaxaAssociationBlock6ReportERSo@Base 2.1.18
_ZNK24NxsTransformationManager10GetIntTypeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZNK24NxsTransformationManager10WriteWtSetERSo@Base 2.1.18
@@ -852,7 +852,7 @@
_ZNK25NxsDiscreteDatatypeMapper21StateCodeForNexusCharEcP8NxsTokenjjPKSt6vectorIiSaIiEERK9NxsString@Base 2.1.18
_ZNK25NxsDiscreteDatatypeMapper22BuildStateSubsetMatrixEv@Base 2.1.18
_ZNK25NxsDiscreteDatatypeMapper22DebugWriteMapperFieldsERSo@Base 2.1.18
- (optional)_ZNK25NxsDiscreteDatatypeMapper22StateCodeToNexusStringB5cxx11Eib@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsDiscreteDatatypeMapper22StateCodeToNexusStringB5cxx11Eib@Base 2.1.18
_ZNK25NxsDiscreteDatatypeMapper23GetNumStatesInStateCodeEi@Base 2.1.18
_ZNK25NxsDiscreteDatatypeMapper23GetPythonicStateVectorsEv@Base 2.1.18
_ZNK25NxsDiscreteDatatypeMapper24IsSemanticallyEquivalentERKS_@Base 2.1.18
@@ -861,9 +861,9 @@
_ZNK25NxsDiscreteDatatypeMapper28BuildStateIntersectionMatrixEv@Base 2.1.18
_ZNK25NxsStoreTokensBlockReader11ReportConstERSo@Base 2.1.18
_ZNK25NxsStoreTokensBlockReader12WriteAsNexusERSo@Base 2.1.18
- (optional)_ZNK25NxsStoreTokensBlockReader18TolerateEOFInBlockEv@Base 2.1.18
- (optional)_ZNK25NxsStoreTokensBlockReader5CloneEv@Base 2.1.18
- (optional)_ZNK25NxsStoreTokensBlockReader6ReportERSo@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsStoreTokensBlockReader18TolerateEOFInBlockEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsStoreTokensBlockReader5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK25NxsStoreTokensBlockReader6ReportERSo@Base 2.1.18
_ZNK8NxsBlock10CloneBlockERSt3mapISt4pairIPKS_NSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEPS_St4lessISA_ESaIS1_IKSA_SB_EEE@Base 2.1.18
_ZNK8NxsBlock12DemandEqualsERN9__gnu_cxx17__normal_iteratorIPK17ProcessedNxsTokenSt6vectorIS2_SaIS2_EEEERKS8_PKc@Base 2.1.18
_ZNK8NxsBlock12WriteAsNexusERSo@Base 2.1.18
@@ -876,19 +876,19 @@
_ZNK8NxsBlock17WriteTitleCommandERSo@Base 2.1.18
_ZNK8NxsBlock18DemandEndSemicolonER8NxsTokenPKc@Base 2.1.18
_ZNK8NxsBlock18TaxonLabelToNumberE9NxsString@Base 2.1.18
- (optional)_ZNK8NxsBlock18TolerateEOFInBlockEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK8NxsBlock18TolerateEOFInBlockEv@Base 2.1.18
_ZNK8NxsBlock19WriteBlockIDCommandERSo@Base 2.1.18
_ZNK8NxsBlock20GenerateNxsExceptionER8NxsTokenPKc@Base 2.1.18
_ZNK8NxsBlock20WriteSkippedCommandsERSo@Base 2.1.18
_ZNK8NxsBlock21GetImpliedBlocksConstEv@Base 2.1.18
_ZNK8NxsBlock23WriteBasicBlockCommandsERSo@Base 2.1.18
_ZNK8NxsBlock35GenerateUnexpectedTokenNxsExceptionER8NxsTokenPKc@Base 2.1.18
- (optional)_ZNK8NxsBlock5CloneEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK8NxsBlock5CloneEv@Base 2.1.18
_ZNK8NxsBlock5GetIDEv@Base 2.1.18
_ZNK8NxsBlock6ReportERSo@Base 2.1.18
_ZNK8NxsBlock7IsEmptyEv@Base 2.1.18
_ZNK8NxsBlock9IsEnabledEv@Base 2.1.18
- (optional)_ZNK8NxsToken15GetFilePositionEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNK8NxsToken15GetFilePositionEv@Base 2.1.18
_ZNK9NxsReader13statusMessageERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZNK9NxsReader16GetBlockPriorityEP8NxsBlock@Base 2.1.18
_ZNK9NxsReader20GetAllTitlesForBlockB5cxx11EPK8NxsBlock@Base 2.1.18
@@ -905,226 +905,226 @@
_ZNK9NxsString21EqualsCaseInsensitiveERKS_@Base 2.1.18
_ZNK9NxsString7IsALongEv@Base 2.1.18
_ZNK9NxsString9IsADoubleEv@Base 2.1.18
- (optional)_ZNKSt5ctypeIcE8do_widenEc@Base 2.1.18
- (optional)_ZNSt11_Deque_baseIjSaIjEED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt11_Deque_baseIjSaIjEED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt11__copy_moveILb0ELb0ESt26random_access_iterator_tagE8__copy_mIPPKcSt20back_insert_iteratorISt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaISD_EEEEET0_T_SI_SH_@Base 2.1.18
- (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIdSaIdEESt4lessIS8_ESaISt4pairIKS8_SB_EEEEEvT_SK_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt12_Destroy_auxILb0EE9__destroyIPSt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEEEEvT_SB_@Base 2.1.18
- (optional)_ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.1.18
- (optional)_ZNSt3mapI9NxsStringSt3setIjSt4lessIjESaIjEES2_IS0_ESaISt4pairIKS0_S5_EEEixERS8_@Base 2.1.18
- (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEENS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISD_EEES9_IS5_ESaIS7_IKS5_SF_EEEixERSH_@Base 2.1.18
- (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEEixERS9_@Base 2.1.18
- (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIdSaIdEESt4lessIS5_ESaISt4pairIKS5_S8_EEEixERSC_@Base 2.1.18
- (optional)_ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEjSt4lessIS5_ESaISt4pairIKS5_jEEEixERS9_@Base 2.1.18
- (optional)_ZNSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcS0_EEEixEOc@Base 2.1.18
- (optional)_ZNSt3mapIc9NxsStringSt4lessIcESaISt4pairIKcS0_EEEixERS4_@Base 2.1.18
- (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE16NxsIntStepMatrixED1Ev@Base 2.1.21+git20180827.c71b264
- (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE16NxsIntStepMatrixED2Ev@Base 2.1.21+git20180827.c71b264
- (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE17NxsRealStepMatrixED1Ev@Base 2.1.21+git20180827.c71b264
- (optional)_ZNSt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE17NxsRealStepMatrixED2Ev@Base 2.1.21+git20180827.c71b264
- (optional)_ZNSt5dequeIPK13NxsSimpleNodeSaIS2_EE16_M_push_back_auxIJRKS2_EEEvDpOT_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt6vectorI10NxsCommentSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI10NxsCommentSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI10NxsCommentSaIS0_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorI10NxsCommentSaIS0_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorI16NxsDistanceDatumSaIS0_EED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorI16NxsDistanceDatumSaIS0_EED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorI17ProcessedNxsTokenSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI17ProcessedNxsTokenSaIS0_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorI17ProcessedNxsTokenSaIS0_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorI19NxsCharacterPatternSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI22NxsFullTreeDescriptionSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI23NxsDiscreteStateSetInfoSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI23NxsDiscreteStateSetInfoSaIS0_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorI23NxsDiscreteStateSetInfoSaIS0_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorI9NxsStringSaIS0_EE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorI9NxsStringSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI9NxsStringSaIS0_EE17_M_realloc_insertIJS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorI9NxsStringSaIS0_EE7reserveEm@Base 2.1.18
- (optional)_ZNSt6vectorI9NxsStringSaIS0_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorI9NxsStringSaIS0_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIN18NxsCharactersBlock13DataTypesEnumESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIN18NxsCharactersBlock13DataTypesEnumESaIS1_EED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIN18NxsCharactersBlock13DataTypesEnumESaIS1_EED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRKS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC1ERKS7_@Base 2.1.18
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEC2ERKS7_@Base 2.1.18
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIP12NxsTaxaBlockSaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP12NxsTaxaBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EE7reserveEm@Base 2.1.18
- (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIP13NxsSimpleNodeSaIS1_EED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIP13NxsTreesBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP17NxsDistancesBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP17NxsUnalignedBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP18NxsCharactersBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP19NxsAssumptionsBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP22NxsAssumptionsBlockAPISaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP23NxsTaxaAssociationBlockSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIP25NxsStoreTokensBlockReaderSaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIPK13NxsSimpleNodeSaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt6vectorIPK13NxsSimpleNodeSaIS2_EED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIPK13NxsSimpleNodeSaIS2_EED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIPK19NxsCharacterPatternSaIS2_EE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorIPK25NxsDiscreteDatatypeMapperSaIS2_EED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIPK25NxsDiscreteDatatypeMapperSaIS2_EED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIS_I16NxsDistanceDatumSaIS0_EESaIS2_EE14_M_fill_assignEmRKS2_@Base 2.1.18
- (optional)_ZNSt6vectorIS_ISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EESaISH_EE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorIS_ISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EESaISH_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_ISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EESaISH_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_ISt3setIiSt4lessIiESaIiEESaIS4_EESaIS6_EE14_M_fill_assignEmRKS6_@Base 2.1.18
- (optional)_ZNSt6vectorIS_ISt3setIiSt4lessIiESaIiEESaIS4_EESaIS6_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_ISt3setIiSt4lessIiESaIiEESaIS4_EESaIS6_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_IbSaIbEESaIS1_EE14_M_fill_assignEmRKS1_@Base 2.1.18
- (optional)_ZNSt6vectorIS_IbSaIbEESaIS1_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_IbSaIbEESaIS1_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EE14_M_fill_assignEmRKS1_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EEC1ERKS3_@Base 2.1.18
- (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EEC2ERKS3_@Base 2.1.18
- (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_IdSaIdEESaIS1_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EE14_M_fill_assignEmRKS1_@Base 2.1.18
- (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EEC1ERKS3_@Base 2.1.18
- (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EEC2ERKS3_@Base 2.1.18
- (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES_IdSaIdEESt4lessIS6_ESaISt4pairIKS6_S8_EEESaISF_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt3setIiSt4lessIiESaIiEESaIS4_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt3setIiSt4lessIiESaIiEESaIS4_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt3setIjSt4lessIjESaIjEESaIS4_EE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EE7reserveEm@Base 2.1.18
- (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt4pairI25NxsDiscreteDatatypeMapperSt3setIjSt4lessIjESaIjEEESaIS7_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EE17_M_realloc_insertIJRKS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EED1Ev@Base 2.1.18
- (optional)_ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES6_ESaIS7_EED2Ev@Base 2.1.18
- (optional)_ZNSt6vectorIaSaIaEE17_M_realloc_insertIJRKaEEEvN9__gnu_cxx17__normal_iteratorIPaS1_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIaSaIaEE17_M_realloc_insertIJaEEEvN9__gnu_cxx17__normal_iteratorIPaS1_EEDpOT_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt6vectorIaSaIaEED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIaSaIaEED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIbSaIbEE9push_backEb@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIdSaIdEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPdS1_EEmRKd@Base 2.1.18
- (optional)_ZNSt6vectorIdSaIdEE17_M_default_appendEm@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIdSaIdEE17_M_realloc_insertIJRKdEEEvN9__gnu_cxx17__normal_iteratorIPdS1_EEDpOT_@Base 2.1.21+git20180827.c71b264
- (optional)_ZNSt6vectorIdSaIdEED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIdSaIdEED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 2.1.18
- (optional)_ZNSt6vectorIiSaIiEE17_M_default_appendEm@Base 2.1.18
- (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIiSaIiEE7reserveEm@Base 2.1.18
- (optional)_ZNSt6vectorIiSaIiEE9push_backERKi@Base 2.1.18
- (optional)_ZNSt6vectorIiSaIiEED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIiSaIiEED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIjSaIjEE17_M_default_appendEm@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJRKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 2.1.21+git20180827.c71b264
- (optional)_ZNSt6vectorIjSaIjEED1Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt6vectorIjSaIjEED2Ev@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt7__cxx1110_List_baseINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1110_List_baseISt4pairINS_12basic_stringIcSt11char_traitsIcESaIcEEESt3setIjSt4lessIjESaIjEEESaISC_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1110_List_baseISt4pairIdSt3setIjSt4lessIjESaIjEEESaIS7_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1110_List_baseISt4pairIiSt3setIjSt4lessIjESaIjEEESaIS7_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1110_List_baseISt6vectorI17ProcessedNxsTokenSaIS2_EESaIS4_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1110_List_baseISt6vectorINS_12basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EESaIS8_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1110_List_baseISt6vectorIiSaIiEESaIS3_EE8_M_clearEv@Base 2.1.18
- (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt7__cxx114listIP8NxsBlockSaIS2_EE6removeERKS2_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt7__cxx114listISt6vectorIiSaIiEESaIS3_EE14_M_fill_assignEmRKS3_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeI19NxsCharacterPatternS0_St9_IdentityIS0_ESt4lessIS0_ESaIS0_EE24_M_get_insert_unique_posERKS0_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeI19NxsCharacterPatternS0_St9_IdentityIS0_ESt4lessIS0_ESaIS0_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS0_ERKS0_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeI9NxsStringSt4pairIKS0_St3setIjSt4lessIjESaIjEEESt10_Select1stIS8_ES4_IS0_ESaIS8_EE24_M_get_insert_unique_posERS2_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeI9NxsStringSt4pairIKS0_St3setIjSt4lessIjESaIjEEESt10_Select1stIS8_ES4_IS0_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS2_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE16_M_insert_uniqueIRKS5_EESt4pairISt17_Rb_tree_iteratorIS5_EbEOT_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE16_M_insert_uniqueIS5_EESt4pairISt17_Rb_tree_iteratorIS5_EbEOT_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE24_M_get_insert_unique_posERKS5_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St9_IdentityIS5_ESt4lessIS5_ESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERKS5_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_16NxsIntStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE22_M_emplace_hint_uniqueIJS6_IS5_S8_EEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE24_M_get_insert_unique_posERS7_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_17NxsRealStepMatrixESt10_Select1stIS9_ESt4lessIS5_ESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS7_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIP8NxsBlockSaISA_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIP8NxsBlockSaISA_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIP8NxsBlockSaISA_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISD_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IS5_St3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IS5_St3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISH_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IdSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IdSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IdSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISH_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IiSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IiSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_NS0_4listIS6_IiSt3setIjSt4lessIjESaIjEEESaISE_EEEESt10_Select1stISH_ESA_IS5_ESaISH_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISH_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PK8NxsBlockESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PK8NxsBlockESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoNS0_4listISt6vectorIS5_SaIS5_EESaISC_EEEEESt10_Select1stISG_ESt4lessIS5_ESaISG_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISG_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoS5_EESt10_Select1stISA_ESt4lessIS5_ESaISA_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISA_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_I15NxsTokenPosInfoSt6vectorIS5_SaIS5_EEEESt10_Select1stISD_ESt4lessIS5_ESaISD_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISD_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S6_IjNS0_4listIS5_SaIS5_EEEEESt10_Select1stISC_ESt4lessIS5_ESaISC_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISC_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3setIjSt4lessIjESaIjEEESt10_Select1stISD_ES9_IS5_ESaISD_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISD_ERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St6vectorIdSaIdEEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE11equal_rangeERS7_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 2.1.21+git20190531.feceb81
- (optional)_ZNSt8_Rb_treeIPK25NxsDiscreteDatatypeMapperS2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE16_M_insert_uniqueIS2_EESt4pairISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE16_M_insert_uniqueIRKcEESt4pairISt17_Rb_tree_iteratorIcEbEOT_@Base 2.1.21+git20171002.4becff7
- (optional)_ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIRKiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC1ERKS5_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEEC2ERKS5_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE16_M_insert_uniqueIRKjEESt4pairISt17_Rb_tree_iteratorIjEbEOT_@Base 2.1.18
- (optional)_ZNSt8_Rb_treeIjjSt9_IdentityIjESt4lessIjESaIjEE22_M_insert_range_uniqueISt23_Rb_tree_const_iteratorIjEEENSt9enable_ifIXsrSt7is_sameIjNSt15iterator_traitsIT_E10value_typeEE5valueEvE4typeESC_SC_@Base 2.1.21+git20180827.c71b264
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+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNSt8_Rb_treeIPK25NxsDiscreteDatatypeMapperS2_St9_IdentityIS2_ESt4lessIS2_ESaIS2_EE16_M_insert_uniqueIS2_EESt4pairISt17_Rb_tree_iteratorIS2_EbEOT_@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNSt8_Rb_treeIccSt9_IdentityIcESt4lessIcESaIcEE16_M_insert_uniqueIRKcEESt4pairISt17_Rb_tree_iteratorIcEbEOT_@Base 2.1.21+git20171002.4becff7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZNSt8_Rb_treeIiiSt9_IdentityIiESt4lessIiESaIiEE16_M_insert_uniqueIRKiEESt4pairISt17_Rb_tree_iteratorIiEbEOT_@Base 2.1.18
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+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPK10NxsCommentSt6vectorIS2_SaIS2_EEEEPS2_ET0_T_SB_SA_@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPK17ProcessedNxsTokenSt6vectorIS2_SaIS2_EEEEPS2_ET0_T_SB_SA_@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPK23NxsDiscreteStateSetInfoSt6vectorIS2_SaIS2_EEEEPS2_ET0_T_SB_SA_@Base 2.1.21+git20210811.b1213a7
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+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorIdSaIdEEmS2_ET_S4_T0_RKT1_@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt18__do_uninit_fill_nIPSt6vectorIiSaIiEEmS2_ET_S4_T0_RKT1_@Base 2.1.21+git20210811.b1213a7
(optional)_ZSt19piecewise_construct@Base 2.1.21+git20210811.b1213a7
- (optional)_ZSt8_DestroyIPSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES0_IdSaIdEESt4lessIS7_ESaISt4pairIKS7_S9_EEESaISG_EEEvT_SK_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZSt8_DestroyIPSt6vectorIiSaIiEEEvT_S4_@Base 2.1.21+git20210811.b1213a7
- (optional)_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt8_DestroyIPSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES0_IdSaIdEESt4lessIS7_ESaISt4pairIKS7_S9_EEESaISG_EEEvT_SK_@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSt8_DestroyIPSt6vectorIiSaIiEEEvT_S4_@Base 2.1.21+git20210811.b1213a7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZSteqIcSt11char_traitsIcESaIcEEbRKNSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_@Base 2.1.21+git20210811.b1213a7
_ZTI12NxsDataBlock@Base 2.1.18
_ZTI12NxsException@Base 2.1.18
_ZTI12NxsTaxaBlock@Base 2.1.18
_ZTI13NxsTreesBlock@Base 2.1.18
_ZTI15NxsBlockFactory@Base 2.1.18
_ZTI15NxsTaxaBlockAPI@Base 2.1.18
- (optional)_ZTI16BogusToIndMapper@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI16BogusToIndMapper@Base 2.1.18
_ZTI16NxsTreesBlockAPI@Base 2.1.18
_ZTI17NxsDistancesBlock@Base 2.1.18
_ZTI17NxsUnalignedBlock@Base 2.1.18
@@ -1135,7 +1135,7 @@
_ZTI19NxsAssumptionsBlock@Base 2.1.18
_ZTI19NxsDataBlockFactory@Base 2.1.18
_ZTI19NxsTaxaBlockFactory@Base 2.1.18
- (optional)_ZTI20NxsCloneBlockFactory@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI20NxsCloneBlockFactory@Base 2.1.18
_ZTI20NxsTreesBlockFactory@Base 2.1.18
_ZTI21NxsCharactersBlockAPI@Base 2.1.18
_ZTI21NxsTaxaBlockSurrogate@Base 2.1.18
@@ -1144,7 +1144,7 @@
_ZTI23NxsTaxaAssociationBlock@Base 2.1.18
_ZTI24NxsDistancesBlockFactory@Base 2.1.18
_ZTI24NxsUnalignedBlockFactory@Base 2.1.18
- (optional)_ZTI24WtSetVectorItemValidator@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI24WtSetVectorItemValidator@Base 2.1.18
_ZTI25ExceptionRaisingNxsReader@Base 2.1.18
_ZTI25NxsCharactersBlockFactory@Base 2.1.18
_ZTI25NxsSetVectorItemValidator@Base 2.1.18
@@ -1152,7 +1152,7 @@
_ZTI25NxsUnimplementedException@Base 2.1.18
_ZTI26NxsAssumptionsBlockFactory@Base 2.1.18
_ZTI26NxsTaxaAssociationBlockAPI@Base 2.1.18
- (optional)_ZTI27DefaultErrorReportNxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTI27DefaultErrorReportNxsReader@Base 2.1.18
_ZTI27DuplicatedLabelNxsException@Base 2.1.18
_ZTI28NxsDefaultPublicBlockFactory@Base 2.1.18
_ZTI30NxsTaxaAssociationBlockFactory@Base 2.1.18
@@ -1209,48 +1209,48 @@
_ZTSN17NxsUnalignedBlock19NxsX_NoDataForTaxonE@Base 2.1.18
_ZTSN9NxsString15NxsX_NotANumberE@Base 2.1.18
_ZTV12NxsDataBlock@Base 2.1.18
- (optional)_ZTV12NxsException@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV12NxsException@Base 2.1.18
_ZTV12NxsTaxaBlock@Base 2.1.18
_ZTV13NxsTreesBlock@Base 2.1.18
_ZTV15NxsTaxaBlockAPI@Base 2.1.18
- (optional)_ZTV16BogusToIndMapper@Base 2.1.18
- (optional)_ZTV16NxsTreesBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV16BogusToIndMapper@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV16NxsTreesBlockAPI@Base 2.1.18
_ZTV17NxsDistancesBlock@Base 2.1.18
_ZTV17NxsUnalignedBlock@Base 2.1.18
_ZTV17PublicNexusReader@Base 2.1.18
_ZTV18NxsCharactersBlock@Base 2.1.18
- (optional)_ZTV18NxsNCLAPIException@Base 2.1.18
- (optional)_ZTV18NxsX_UnexpectedEOF@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV18NxsNCLAPIException@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV18NxsX_UnexpectedEOF@Base 2.1.18
_ZTV19NxsAssumptionsBlock@Base 2.1.18
_ZTV19NxsDataBlockFactory@Base 2.1.18
_ZTV19NxsTaxaBlockFactory@Base 2.1.18
- (optional)_ZTV20NxsCloneBlockFactory@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV20NxsCloneBlockFactory@Base 2.1.18
_ZTV20NxsTreesBlockFactory@Base 2.1.18
- (optional)_ZTV21NxsCharactersBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV21NxsCharactersBlockAPI@Base 2.1.18
_ZTV21NxsTaxaBlockSurrogate@Base 2.1.18
- (optional)_ZTV22NxsAssumptionsBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV22NxsAssumptionsBlockAPI@Base 2.1.18
_ZTV23NxsTaxaAssociationBlock@Base 2.1.18
_ZTV24NxsDistancesBlockFactory@Base 2.1.18
_ZTV24NxsUnalignedBlockFactory@Base 2.1.18
- (optional)_ZTV24WtSetVectorItemValidator@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV24WtSetVectorItemValidator@Base 2.1.18
_ZTV25ExceptionRaisingNxsReader@Base 2.1.18
_ZTV25NxsCharactersBlockFactory@Base 2.1.18
_ZTV25NxsStoreTokensBlockReader@Base 2.1.18
- (optional)_ZTV25NxsUnimplementedException@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV25NxsUnimplementedException@Base 2.1.18
_ZTV26NxsAssumptionsBlockFactory@Base 2.1.18
- (optional)_ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18
- (optional)_ZTV27DefaultErrorReportNxsReader@Base 2.1.18
- (optional)_ZTV27DuplicatedLabelNxsException@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV26NxsTaxaAssociationBlockAPI@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV27DefaultErrorReportNxsReader@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV27DuplicatedLabelNxsException@Base 2.1.18
_ZTV28NxsDefaultPublicBlockFactory@Base 2.1.18
_ZTV30NxsTaxaAssociationBlockFactory@Base 2.1.18
- (optional)_ZTV31NxsSignalCanceledParseException@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZTV31NxsSignalCanceledParseException@Base 2.1.18
_ZTV8NxsBlock@Base 2.1.18
_ZTV8NxsToken@Base 2.1.18
_ZTV9NxsReader@Base 2.1.18
- (optional)_ZThn192_N12NxsDataBlockD0Ev@Base 2.1.18
- (optional)_ZThn192_N12NxsDataBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N12NxsDataBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N12NxsDataBlockD1Ev@Base 2.1.18
_ZThn192_N12NxsTaxaBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZThn192_N12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N12NxsTaxaBlock14AppendNewLabelERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.1.18
_ZThn192_N12NxsTaxaBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
_ZThn192_N12NxsTaxaBlockD0Ev@Base 2.1.18
_ZThn192_N12NxsTaxaBlockD1Ev@Base 2.1.18
@@ -1264,27 +1264,27 @@
_ZThn192_N17NxsUnalignedBlockD1Ev@Base 2.1.18
_ZThn192_N18NxsCharactersBlock14AddNewIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZThn192_N18NxsCharactersBlock15AddNewPartitionERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS0_4listISt4pairIS5_St3setIjSt4lessIjESaIjEEESaISF_EEE@Base 2.1.18
- (optional)_ZThn192_N18NxsCharactersBlockD0Ev@Base 2.1.18
- (optional)_ZThn192_N18NxsCharactersBlockD1Ev@Base 2.1.18
- (optional)_ZThn192_NK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N18NxsCharactersBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_N18NxsCharactersBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK12NxsTaxaBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZThn192_NK12NxsTaxaBlock11GetMaxIndexEv@Base 2.1.18
_ZThn192_NK12NxsTaxaBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZThn192_NK12NxsTaxaBlock27GetNumLabelsCurrentlyStoredEv@Base 2.1.18
- (optional)_ZThn192_NK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK13NxsTreesBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZThn192_NK13NxsTreesBlock11GetMaxIndexEv@Base 2.1.18
_ZThn192_NK13NxsTreesBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZThn192_NK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
- (optional)_ZThn192_NK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
- (optional)_ZThn192_NK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18
- (optional)_ZThn192_NK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK17NxsDistancesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK17NxsUnalignedBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK17NxsUnalignedBlock12GetNTaxTotalEv@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn192_NK18NxsCharactersBlock11GetIndexSetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
_ZThn192_NK18NxsCharactersBlock11GetMaxIndexEv@Base 2.1.18
_ZThn192_NK18NxsCharactersBlock18GetIndicesForLabelERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPSt3setIjSt4lessIjESaIjEE@Base 2.1.18
- (optional)_ZThn200_N12NxsDataBlockD0Ev@Base 2.1.18
- (optional)_ZThn200_N12NxsDataBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N12NxsDataBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N12NxsDataBlockD1Ev@Base 2.1.18
_ZThn200_N13NxsTreesBlockD0Ev@Base 2.1.18
_ZThn200_N13NxsTreesBlockD1Ev@Base 2.1.18
- (optional)_ZThn200_N18NxsCharactersBlockD0Ev@Base 2.1.18
- (optional)_ZThn200_N18NxsCharactersBlockD1Ev@Base 2.1.18
- (optional)_ZThn200_NK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
- (optional)_ZThn200_NK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N18NxsCharactersBlockD0Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_N18NxsCharactersBlockD1Ev@Base 2.1.18
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_NK13NxsTreesBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
+#MISSING: 2.1.21+git20210811.b1213a7-6# (optional)_ZThn200_NK18NxsCharactersBlock12GetBlockNameB5cxx11Ev@Base 2.1.21+git20171002.4becff7
gFormatNames@Base 2.1.18
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: Depends field of package libncl-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'ncl-tools' in '../ncl-tools_2.1.21+git20210811.b1213a7-6_amd64.deb'.
dpkg-deb: building package 'ncl-tools-dbgsym' in '../ncl-tools-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb'.
dpkg-deb: building package 'libncl2' in '../libncl2_2.1.21+git20210811.b1213a7-6_amd64.deb'.
dpkg-deb: building package 'libncl2-dbgsym' in '../libncl2-dbgsym_2.1.21+git20210811.b1213a7-6_amd64.deb'.
dpkg-deb: building package 'libncl-dev' in '../libncl-dev_2.1.21+git20210811.b1213a7-6_amd64.deb'.
dpkg-genbuildinfo --build=binary -O../libncl_2.1.21+git20210811.b1213a7-6_amd64.buildinfo
dpkg-genchanges --build=binary -O../libncl_2.1.21+git20210811.b1213a7-6_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/B01_cleanup starting
I: user script /srv/workspace/pbuilder/2318425/tmp/hooks/B01_cleanup finished
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/2318425 and its subdirectories
I: Current time: Mon Mar 30 20:24:15 +14 2026
I: pbuilder-time-stamp: 1774851855