I: pbuilder: network access will be disabled during build
I: Current time: Tue Feb 24 01:30:42 -12 2026
I: pbuilder-time-stamp: 1771939842
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz]
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc]
I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz]
I: copying [./mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz]
I: Extracting source
dpkg-source: warning: cannot verify inline signature for ./mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc: unsupported subcommand
dpkg-source: info: extracting mshr in mshr-2019.2.0~git20230811.ff54a68+dfsg1
dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1.orig.tar.xz
dpkg-source: info: unpacking mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying test_controls.diff
dpkg-source: info: applying lib_rename.patch
dpkg-source: info: applying CGAL_6_compatibility.diff
I: using fakeroot in build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/2853964/tmp/hooks/D02_print_environment starting
I: set
  BUILDDIR='/build/reproducible-path'
  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
  BUILDUSERNAME='pbuilder1'
  BUILD_ARCH='amd64'
  DEBIAN_FRONTEND='noninteractive'
  DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
  DISTRIBUTION='unstable'
  HOME='/root'
  HOST_ARCH='amd64'
  IFS=' 	
  '
  INVOCATION_ID='de96ae3228414e88b029fcbe819da237'
  LANG='C'
  LANGUAGE='en_US:en'
  LC_ALL='C'
  MAIL='/var/mail/root'
  OPTIND='1'
  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
  PBCURRENTCOMMANDLINEOPERATION='build'
  PBUILDER_OPERATION='build'
  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
  PBUILDER_SYSCONFDIR='/etc'
  PPID='2853964'
  PS1='# '
  PS2='> '
  PS4='+ '
  PWD='/'
  SHELL='/bin/bash'
  SHLVL='2'
  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.pNXtCmn8/pbuilderrc_kr3G --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.pNXtCmn8/b1 --logfile b1/build.log mshr_2019.2.0~git20230811.ff54a68+dfsg1-4.dsc'
  SUDO_GID='109'
  SUDO_UID='104'
  SUDO_USER='jenkins'
  TERM='unknown'
  TZ='/usr/share/zoneinfo/Etc/GMT+12'
  USER='root'
  _='/usr/bin/systemd-run'
I: uname -a
  Linux infom02-amd64 6.11.10+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.11.10-1~bpo12+1 (2024-12-19) x86_64 GNU/Linux
I: ls -l /bin
  lrwxrwxrwx 1 root root 7 Nov 22  2024 /bin -> usr/bin
I: user script /srv/workspace/pbuilder/2853964/tmp/hooks/D02_print_environment finished
 -> Attempting to satisfy build-dependencies
 -> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: amd64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
 This package was created automatically by pbuilder to satisfy the
 build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), python3-all-dev, dh-python, python3-setuptools, cmake, python3-pybind11, libmpfr-dev, libgmp-dev, libcgal-dev (>= 6.0~), libtet1.5-dev, libdolfin-dev (>= 2019.2), libdolfin64-dev (>= 2019.2.0~git20200218.027d9cc-16), python3-ffc (>= 2019.2), python3-numpy, python3-petsc4py, python3-slepc4py, python3-petsc4py-real, python3-slepc4py-real, python3-petsc4py-64-real, python3-slepc4py-64-real
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19850 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
 pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
  Package debhelper-compat is not installed.
 pbuilder-satisfydepends-dummy depends on python3-all-dev; however:
  Package python3-all-dev is not installed.
 pbuilder-satisfydepends-dummy depends on dh-python; however:
  Package dh-python is not installed.
 pbuilder-satisfydepends-dummy depends on python3-setuptools; however:
  Package python3-setuptools is not installed.
 pbuilder-satisfydepends-dummy depends on cmake; however:
  Package cmake is not installed.
 pbuilder-satisfydepends-dummy depends on python3-pybind11; however:
  Package python3-pybind11 is not installed.
 pbuilder-satisfydepends-dummy depends on libmpfr-dev; however:
  Package libmpfr-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libgmp-dev; however:
  Package libgmp-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libcgal-dev (>= 6.0~); however:
  Package libcgal-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libtet1.5-dev; however:
  Package libtet1.5-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libdolfin-dev (>= 2019.2); however:
  Package libdolfin-dev is not installed.
 pbuilder-satisfydepends-dummy depends on libdolfin64-dev (>= 2019.2.0~git20200218.027d9cc-16); however:
  Package libdolfin64-dev is not installed.
 pbuilder-satisfydepends-dummy depends on python3-ffc (>= 2019.2); however:
  Package python3-ffc is not installed.
 pbuilder-satisfydepends-dummy depends on python3-numpy; however:
  Package python3-numpy is not installed.
 pbuilder-satisfydepends-dummy depends on python3-petsc4py; however:
  Package python3-petsc4py is not installed.
 pbuilder-satisfydepends-dummy depends on python3-slepc4py; however:
  Package python3-slepc4py is not installed.
 pbuilder-satisfydepends-dummy depends on python3-petsc4py-real; however:
  Package python3-petsc4py-real is not installed.
 pbuilder-satisfydepends-dummy depends on python3-slepc4py-real; however:
  Package python3-slepc4py-real is not installed.
 pbuilder-satisfydepends-dummy depends on python3-petsc4py-64-real; however:
  Package python3-petsc4py-64-real is not installed.
 pbuilder-satisfydepends-dummy depends on python3-slepc4py-64-real; however:
  Package python3-slepc4py-64-real is not installed.

Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
  autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-x86-64-linux-gnu{a} gfortran-x86-64-linux-gnu{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libamd-comgr2{a} libamd3{a} libamdhip64-5{a} libarchive-zip-perl{a} libarchive13t64{a} libarpack2-dev{a} libarpack2t64{a} libblas-dev{a} libblas3{a} libblas64-3{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-chrono-dev{a} libboost-chrono1.83-dev{a} libboost-chrono1.83.0t64{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-math-dev{a} libboost-math1.83-dev{a} libboost-math1.83.0{a} libboost-mpi-dev{a} libboost-mpi1.83-dev{a} libboost-mpi1.83.0{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization-dev{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost-thread-dev{a} libboost-thread1.83-dev{a} libboost-thread1.83.0{a} libboost-timer-dev{a} libboost-timer1.83-dev{a} libboost-timer1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbtf2{a} libc6-dbg{a} libcamd3{a} libcbor0.10{a} libccolamd3{a} libcgal-dev{a} libcholmod5{a} libcolamd3{a} libcom-err2{a} libcombblas2.0.0t64{a} libcurl4-openssl-dev{a} libcurl4t64{a} libcxsparse4{a} libdebhelper-perl{a} libdolfin-dev{a} libdolfin-dev-common{a} libdolfin2019.2t64{a} libdolfin64-2019.2t64{a} libdolfin64-dev{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm2{a} libedit2{a} libeigen3-dev{a} libelf1t64{a} libevent-2.1-7t64{a} libevent-core-2.1-7t64{a} libevent-dev{a} libevent-extra-2.1-7t64{a} libevent-openssl-2.1-7t64{a} libevent-pthreads-2.1-7t64{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libffi8{a} libfftw3-bin{a} libfftw3-dev{a} libfftw3-double3{a} libfftw3-long3{a} libfftw3-mpi-dev{a} libfftw3-mpi3{a} libfftw3-quad3{a} libfftw3-single3{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-mpi-dev{a} libhdf5-openmpi-310{a} libhdf5-openmpi-cpp-310{a} libhdf5-openmpi-dev{a} libhdf5-openmpi-fortran-310{a} libhdf5-openmpi-hl-310{a} libhdf5-openmpi-hl-cpp-310{a} libhdf5-openmpi-hl-fortran-310{a} libhsa-runtime64-1{a} libhsakmt1{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libhypre-2.32.0{a} libhypre-dev{a} libhypre64m-2.32.0{a} libhypre64m-dev{a} libibmad5{a} libibumad3{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libklu2{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} liblapack64-3{a} libldap-dev{a} libldap2{a} libldl3{a} libllvm17t64{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1t64{a} libmetis5{a} libmpfr-dev{a} libmumps-5.7{a} libmumps-64pord-5.7{a} libmumps-dev{a} libmumps-headers-dev{a} libmumps64-dev{a} libmunge2{a} libnghttp2-14{a} libnghttp2-dev{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnsl2{a} libnuma-dev{a} libnuma1{a} libopenblas64-0{a} libopenblas64-0-pthread{a} libopenblas64-dev{a} libopenblas64-pthread-dev{a} libopenmpi-dev{a} libopenmpi40{a} libp11-kit-dev{a} libp11-kit0{a} libparpack2-dev{a} libparpack2t64{a} libparu1{a} libpciaccess0{a} libpetsc-real3.22{a} libpetsc-real3.22-dev{a} libpetsc3.22-dev-common{a} libpetsc64-real3.22{a} libpetsc64-real3.22-dev{a} libpipeline1{a} libpkgconf3{a} libpmix-dev{a} libpmix2t64{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libpsm-infinipath1{a} libpsm2-2{a} libptscotch-7.0{a} libptscotch-dev{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} librbio4{a} librdmacm1t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libscalapack-mpi-dev{a} libscalapack-openmpi-dev{a} libscalapack-openmpi2.2{a} libscotch-7.0{a} libscotch-dev{a} libslepc-real3.22{a} libslepc-real3.22-dev{a} libslepc64-real3.22{a} libslepc64-real3.22-dev{a} libspex3{a} libspqr4{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsuitesparse-dev{a} libsuitesparse-mongoose3{a} libsuitesparseconfig7{a} libsuperlu-dev{a} libsuperlu-dist-dev{a} libsuperlu-dist8{a} libsuperlu7{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtet1.5{a} libtet1.5-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libucx0{a} libumfpack6{a} libunbound8{a} libunistring5{a} libuv1t64{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext6{a} libxml2{a} libxml2-dev{a} libxnvctrl0{a} libyaml-0-2{a} libyaml-dev{a} libz3-4{a} libzstd-dev{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} netbase{a} nettle-dev{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} opencl-clhpp-headers{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} pybind11-dev{a} python-babel-localedata{a} python-petsc4py-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-defusedxml{a} python3-dev{a} python3-dijitso{a} python3-docutils{a} python3-ffc{a} python3-fiat{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-mpi4py{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-petsc4py{a} python3-petsc4py-64-real{a} python3-petsc4py-64-real3.22{a} python3-petsc4py-real{a} python3-petsc4py-real3.22{a} python3-pkg-resources{a} python3-pybind11{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-slepc4py{a} python3-slepc4py-64-real{a} python3-slepc4py-64-real3.22{a} python3-slepc4py-real{a} python3-slepc4py-real3.22{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sympy{a} python3-typeguard{a} python3-typing-extensions{a} python3-ufl-legacy{a} python3-urllib3{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} swig{a} tzdata{a} valgrind{a} valgrind-mpi{a} x11proto-dev{a} xml-core{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} 
The following packages are RECOMMENDED but will NOT be installed:
  curl gdb isympy-common javascript-common krb5-locales ksh ksh93u+m libarchive-cpio-perl libcoarrays-openmpi-dev libgl-dev libgraphblas-dev libjson-xs-perl libldap-common libmail-sendmail-perl libpaper-utils libpetsc-complex-dev libpetsc-real-dev libpetsc3.22-dev-examples libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx mksh psmisc publicsuffix python3-pil wget xauth zsh 
0 packages upgraded, 400 newly installed, 0 to remove and 0 not upgraded.
Need to get 375 MB of archives. After unpacking 1792 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.1-3 [858 kB]
Get: 2 http://deb.debian.org/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB]
Get: 3 http://deb.debian.org/debian unstable/main amd64 python3.13-minimal amd64 3.13.1-3 [2202 kB]
Get: 4 http://deb.debian.org/debian unstable/main amd64 python3-minimal amd64 3.13.1-2 [27.0 kB]
Get: 5 http://deb.debian.org/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB]
Get: 6 http://deb.debian.org/debian unstable/main amd64 netbase all 6.4 [12.8 kB]
Get: 7 http://deb.debian.org/debian unstable/main amd64 tzdata all 2025a-1 [259 kB]
Get: 8 http://deb.debian.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB]
Get: 9 http://deb.debian.org/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get: 10 http://deb.debian.org/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get: 11 http://deb.debian.org/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.1-3 [1973 kB]
Get: 12 http://deb.debian.org/debian unstable/main amd64 python3.13 amd64 3.13.1-3 [740 kB]
Get: 13 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib amd64 3.13.1-2 [9952 B]
Get: 14 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.13.1-2 [28.0 kB]
Get: 15 http://deb.debian.org/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-5 [817 kB]
Get: 16 http://deb.debian.org/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-5 [2164 kB]
Get: 17 http://deb.debian.org/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB]
Get: 18 http://deb.debian.org/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB]
Get: 19 http://deb.debian.org/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB]
Get: 20 http://deb.debian.org/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB]
Get: 21 http://deb.debian.org/debian unstable/main amd64 openssl amd64 3.4.0-2 [1422 kB]
Get: 22 http://deb.debian.org/debian unstable/main amd64 ca-certificates all 20241223 [164 kB]
Get: 23 http://deb.debian.org/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB]
Get: 24 http://deb.debian.org/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB]
Get: 25 http://deb.debian.org/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB]
Get: 26 http://deb.debian.org/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB]
Get: 27 http://deb.debian.org/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get: 28 http://deb.debian.org/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB]
Get: 29 http://deb.debian.org/debian unstable/main amd64 bsdextrautils amd64 2.40.4-1 [92.2 kB]
Get: 30 http://deb.debian.org/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get: 31 http://deb.debian.org/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB]
Get: 32 http://deb.debian.org/debian unstable/main amd64 libedit2 amd64 3.1-20250104-1 [93.8 kB]
Get: 33 http://deb.debian.org/debian unstable/main amd64 libcbor0.10 amd64 0.10.2-2 [28.3 kB]
Get: 34 http://deb.debian.org/debian unstable/main amd64 libfido2-1 amd64 1.15.0-1+b1 [78.7 kB]
Get: 35 http://deb.debian.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-4 [32.8 kB]
Get: 36 http://deb.debian.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1 [24.0 kB]
Get: 37 http://deb.debian.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-4 [80.9 kB]
Get: 38 http://deb.debian.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B]
Get: 39 http://deb.debian.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-4 [326 kB]
Get: 40 http://deb.debian.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-4 [138 kB]
Get: 41 http://deb.debian.org/debian unstable/main amd64 openssh-client amd64 1:9.9p1-3 [991 kB]
Get: 42 http://deb.debian.org/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB]
Get: 43 http://deb.debian.org/debian unstable/main amd64 autoconf all 2.72-3 [493 kB]
Get: 44 http://deb.debian.org/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB]
Get: 45 http://deb.debian.org/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB]
Get: 46 http://deb.debian.org/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB]
Get: 47 http://deb.debian.org/debian unstable/main amd64 cmake-data all 3.31.4-2 [2267 kB]
Get: 48 http://deb.debian.org/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB]
Get: 49 http://deb.debian.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB]
Get: 50 http://deb.debian.org/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB]
Get: 51 http://deb.debian.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB]
Get: 52 http://deb.debian.org/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB]
Get: 53 http://deb.debian.org/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB]
Get: 54 http://deb.debian.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8+b1 [19.9 kB]
Get: 55 http://deb.debian.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8+b1 [57.6 kB]
Get: 56 http://deb.debian.org/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-1 [192 kB]
Get: 57 http://deb.debian.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB]
Get: 58 http://deb.debian.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get: 59 http://deb.debian.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get: 60 http://deb.debian.org/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB]
Get: 61 http://deb.debian.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB]
Get: 62 http://deb.debian.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get: 63 http://deb.debian.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get: 64 http://deb.debian.org/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1+b1 [352 kB]
Get: 65 http://deb.debian.org/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB]
Get: 66 http://deb.debian.org/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB]
Get: 67 http://deb.debian.org/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB]
Get: 68 http://deb.debian.org/debian unstable/main amd64 cmake amd64 3.31.4-2 [12.0 MB]
Get: 69 http://deb.debian.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-1 [55.7 kB]
Get: 70 http://deb.debian.org/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB]
Get: 71 http://deb.debian.org/debian unstable/main amd64 libtool all 2.5.4-2 [539 kB]
Get: 72 http://deb.debian.org/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get: 73 http://deb.debian.org/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 74 http://deb.debian.org/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB]
Get: 75 http://deb.debian.org/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B]
Get: 76 http://deb.debian.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get: 77 http://deb.debian.org/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get: 78 http://deb.debian.org/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB]
Get: 79 http://deb.debian.org/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get: 80 http://deb.debian.org/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 81 http://deb.debian.org/debian unstable/main amd64 debhelper all 13.24.1 [920 kB]
Get: 82 http://deb.debian.org/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB]
Get: 83 http://deb.debian.org/debian unstable/main amd64 python3-more-itertools all 10.6.0-1 [65.3 kB]
Get: 84 http://deb.debian.org/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB]
Get: 85 http://deb.debian.org/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB]
Get: 86 http://deb.debian.org/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB]
Get: 87 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B]
Get: 88 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB]
Get: 89 http://deb.debian.org/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB]
Get: 90 http://deb.debian.org/debian unstable/main amd64 python3-jaraco.text all 4.0.0-1 [11.4 kB]
Get: 91 http://deb.debian.org/debian unstable/main amd64 python3-zipp all 3.21.0-1 [10.6 kB]
Get: 92 http://deb.debian.org/debian unstable/main amd64 python3-setuptools all 75.6.0-1 [720 kB]
Get: 93 http://deb.debian.org/debian unstable/main amd64 dh-python all 6.20250108 [113 kB]
Get: 94 http://deb.debian.org/debian unstable/main amd64 xml-core all 0.19 [20.1 kB]
Get: 95 http://deb.debian.org/debian unstable/main amd64 docutils-common all 0.21.2+dfsg-2 [128 kB]
Get: 96 http://deb.debian.org/debian unstable/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB]
Get: 97 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 14.2.0-14 [837 kB]
Get: 98 http://deb.debian.org/debian unstable/main amd64 libgfortran-14-dev amd64 14.2.0-14 [881 kB]
Get: 99 http://deb.debian.org/debian unstable/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-14 [11.7 MB]
Get: 100 http://deb.debian.org/debian unstable/main amd64 gfortran-14 amd64 14.2.0-14 [13.5 kB]
Get: 101 http://deb.debian.org/debian unstable/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1 [1284 B]
Get: 102 http://deb.debian.org/debian unstable/main amd64 gfortran amd64 4:14.2.0-1 [1436 B]
Get: 103 http://deb.debian.org/debian unstable/main amd64 libnl-3-200 amd64 3.7.0-0.3+b1 [59.4 kB]
Get: 104 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-200 amd64 3.7.0-0.3+b1 [182 kB]
Get: 105 http://deb.debian.org/debian unstable/main amd64 libibverbs1 amd64 55.0-1 [62.2 kB]
Get: 106 http://deb.debian.org/debian unstable/main amd64 ibverbs-providers amd64 55.0-1 [351 kB]
Get: 107 http://deb.debian.org/debian unstable/main amd64 icu-devtools amd64 72.1-6 [210 kB]
Get: 108 http://deb.debian.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-4 [60.0 kB]
Get: 109 http://deb.debian.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-4 [42.2 kB]
Get: 110 http://deb.debian.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-4 [42.4 kB]
Get: 111 http://deb.debian.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-4 [54.2 kB]
Get: 112 http://deb.debian.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-4 [126 kB]
Get: 113 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.1.3-1+b1 [23.8 kB]
Get: 114 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.1.3-1+b1 [8080 B]
Get: 115 http://deb.debian.org/debian unstable/main amd64 libaec-dev amd64 1.1.3-1+b1 [21.5 kB]
Get: 116 http://deb.debian.org/debian unstable/main amd64 libz3-4 amd64 4.13.3-1 [8560 kB]
Get: 117 http://deb.debian.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-20+b1 [23.6 MB]
Get: 118 http://deb.debian.org/debian unstable/main amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3+b2 [13.0 MB]
Get: 119 http://deb.debian.org/debian unstable/main amd64 libsuitesparseconfig7 amd64 1:7.8.3+dfsg-2 [23.8 kB]
Get: 120 http://deb.debian.org/debian unstable/main amd64 libamd3 amd64 1:7.8.3+dfsg-2 [40.7 kB]
Get: 121 http://deb.debian.org/debian unstable/main amd64 libdrm-common all 2.4.123-1 [8084 B]
Get: 122 http://deb.debian.org/debian unstable/main amd64 libdrm2 amd64 2.4.123-1 [38.7 kB]
Get: 123 http://deb.debian.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.123-1 [22.3 kB]
Get: 124 http://deb.debian.org/debian unstable/main amd64 libnuma1 amd64 2.0.18-1+b1 [22.3 kB]
Get: 125 http://deb.debian.org/debian unstable/main amd64 libhsakmt1 amd64 6.1.2+ds-1 [59.8 kB]
Get: 126 http://deb.debian.org/debian unstable/main amd64 libhsa-runtime64-1 amd64 6.1.2-2 [535 kB]
Get: 127 http://deb.debian.org/debian unstable/main amd64 libamdhip64-5 amd64 5.7.1-5 [8877 kB]
Get: 128 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 3.12.0-4 [152 kB]
Get: 129 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-4 [2450 kB]
Get: 130 http://deb.debian.org/debian unstable/main amd64 libarpack2t64 amd64 3.9.1-4 [104 kB]
Get: 131 http://deb.debian.org/debian unstable/main amd64 libblas-dev amd64 3.12.0-4 [161 kB]
Get: 132 http://deb.debian.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-4 [4991 kB]
Get: 133 http://deb.debian.org/debian unstable/main amd64 libarpack2-dev amd64 3.9.1-4 [120 kB]
Get: 134 http://deb.debian.org/debian unstable/main amd64 libblas64-3 amd64 3.12.0-4 [146 kB]
Get: 135 http://deb.debian.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4 [10.6 MB]
Get: 136 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83.0 amd64 1.83.0-4 [234 kB]
Get: 137 http://deb.debian.org/debian unstable/main amd64 libboost-atomic1.83-dev amd64 1.83.0-4 [235 kB]
Get: 138 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83.0t64 amd64 1.83.0-4 [240 kB]
Get: 139 http://deb.debian.org/debian unstable/main amd64 libboost-chrono1.83-dev amd64 1.83.0-4 [245 kB]
Get: 140 http://deb.debian.org/debian unstable/main amd64 libboost-chrono-dev amd64 1.83.0.2+b2 [4224 B]
Get: 141 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83.0 amd64 1.83.0-4 [230 kB]
Get: 142 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83.0 amd64 1.83.0-4 [333 kB]
Get: 143 http://deb.debian.org/debian unstable/main amd64 libboost-serialization1.83-dev amd64 1.83.0-4 [373 kB]
Get: 144 http://deb.debian.org/debian unstable/main amd64 libboost-date-time1.83-dev amd64 1.83.0-4 [239 kB]
Get: 145 http://deb.debian.org/debian unstable/main amd64 libboost-dev amd64 1.83.0.2+b2 [3836 B]
Get: 146 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83.0 amd64 1.83.0-4 [282 kB]
Get: 147 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83.0 amd64 1.83.0-4 [230 kB]
Get: 148 http://deb.debian.org/debian unstable/main amd64 libboost-system1.83-dev amd64 1.83.0-4 [231 kB]
Get: 149 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem1.83-dev amd64 1.83.0-4 [298 kB]
Get: 150 http://deb.debian.org/debian unstable/main amd64 libboost-filesystem-dev amd64 1.83.0.2+b2 [3628 B]
Get: 151 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83.0 amd64 1.83.0-4 [330 kB]
Get: 152 http://deb.debian.org/debian unstable/main amd64 libicu-dev amd64 72.1-6 [10.4 MB]
Get: 153 http://deb.debian.org/debian unstable/main amd64 libboost-regex1.83-dev amd64 1.83.0-4 [346 kB]
Get: 154 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams1.83-dev amd64 1.83.0-4 [261 kB]
Get: 155 http://deb.debian.org/debian unstable/main amd64 libboost-iostreams-dev amd64 1.83.0.2+b2 [3580 B]
Get: 156 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83.0 amd64 1.83.0-4 [523 kB]
Get: 157 http://deb.debian.org/debian unstable/main amd64 libboost-math1.83-dev amd64 1.83.0-4 [571 kB]
Get: 158 http://deb.debian.org/debian unstable/main amd64 libboost-math-dev amd64 1.83.0.2+b2 [3796 B]
Get: 159 http://deb.debian.org/debian unstable/main amd64 libevent-core-2.1-7t64 amd64 2.1.12-stable-10+b1 [132 kB]
Get: 160 http://deb.debian.org/debian unstable/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10+b1 [54.3 kB]
Get: 161 http://deb.debian.org/debian unstable/main amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [170 kB]
Get: 162 http://deb.debian.org/debian unstable/main amd64 libpsm2-2 amd64 11.2.185-2.1 [181 kB]
Get: 163 http://deb.debian.org/debian unstable/main amd64 librdmacm1t64 amd64 55.0-1 [70.2 kB]
Get: 164 http://deb.debian.org/debian unstable/main amd64 libfabric1 amd64 1.17.0-3.1 [631 kB]
Get: 165 http://deb.debian.org/debian unstable/main amd64 libhwloc15 amd64 2.11.2-1 [164 kB]
Get: 166 http://deb.debian.org/debian unstable/main amd64 libmunge2 amd64 0.5.15-4+b1 [20.0 kB]
Get: 167 http://deb.debian.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3+b3 [51.9 kB]
Get: 168 http://deb.debian.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get: 169 http://deb.debian.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get: 170 http://deb.debian.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get: 171 http://deb.debian.org/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB]
Get: 172 http://deb.debian.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.10-2 [813 kB]
Get: 173 http://deb.debian.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB]
Get: 174 http://deb.debian.org/debian unstable/main amd64 libxnvctrl0 amd64 535.171.04-1+b1 [14.2 kB]
Get: 175 http://deb.debian.org/debian unstable/main amd64 ocl-icd-libopencl1 amd64 2.3.2-1+b2 [40.2 kB]
Get: 176 http://deb.debian.org/debian unstable/main amd64 libhwloc-plugins amd64 2.11.2-1 [18.1 kB]
Get: 177 http://deb.debian.org/debian unstable/main amd64 libpmix2t64 amd64 5.0.6-1 [652 kB]
Get: 178 http://deb.debian.org/debian unstable/main amd64 libibumad3 amd64 55.0-1 [28.5 kB]
Get: 179 http://deb.debian.org/debian unstable/main amd64 libibmad5 amd64 55.0-1 [43.3 kB]
Get: 180 http://deb.debian.org/debian unstable/main amd64 libucx0 amd64 1.17.0+ds-3 [1130 kB]
Get: 181 http://deb.debian.org/debian unstable/main amd64 libopenmpi40 amd64 5.0.6-3 [2360 kB]
Get: 182 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83.0 amd64 1.83.0-4 [271 kB]
Get: 183 http://deb.debian.org/debian unstable/main amd64 openmpi-common all 5.0.6-3 [97.0 kB]
Get: 184 http://deb.debian.org/debian unstable/main amd64 libnl-3-dev amd64 3.7.0-0.3+b1 [100 kB]
Get: 185 http://deb.debian.org/debian unstable/main amd64 libnl-route-3-dev amd64 3.7.0-0.3+b1 [200 kB]
Get: 186 http://deb.debian.org/debian unstable/main amd64 libibverbs-dev amd64 55.0-1 [648 kB]
Get: 187 http://deb.debian.org/debian unstable/main amd64 libnuma-dev amd64 2.0.18-1+b1 [36.6 kB]
Get: 188 http://deb.debian.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-2 [415 kB]
Get: 189 http://deb.debian.org/debian unstable/main amd64 libltdl-dev amd64 2.5.4-2 [165 kB]
Get: 190 http://deb.debian.org/debian unstable/main amd64 libhwloc-dev amd64 2.11.2-1 [254 kB]
Get: 191 http://deb.debian.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB]
Get: 192 http://deb.debian.org/debian unstable/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10+b1 [108 kB]
Get: 193 http://deb.debian.org/debian unstable/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10+b1 [61.1 kB]
Get: 194 http://deb.debian.org/debian unstable/main amd64 libevent-dev amd64 2.1.12-stable-10+b1 [305 kB]
Get: 195 http://deb.debian.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB]
Get: 196 http://deb.debian.org/debian unstable/main amd64 python3-defusedxml all 0.7.1-3 [43.4 kB]
Get: 197 http://deb.debian.org/debian unstable/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get: 198 http://deb.debian.org/debian unstable/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get: 199 http://deb.debian.org/debian unstable/main amd64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB]
Get: 200 http://deb.debian.org/debian unstable/main amd64 libjson-perl all 4.10000-1 [87.5 kB]
Get: 201 http://deb.debian.org/debian unstable/main amd64 sphinx-common all 8.1.3-4 [616 kB]
Get: 202 http://deb.debian.org/debian unstable/main amd64 python3-alabaster all 0.7.16-0.1 [27.9 kB]
Get: 203 http://deb.debian.org/debian unstable/main amd64 python-babel-localedata all 2.16.0-1 [5696 kB]
Get: 204 http://deb.debian.org/debian unstable/main amd64 python3-babel all 2.16.0-1 [114 kB]
Get: 205 http://deb.debian.org/debian unstable/main amd64 python3-roman all 4.2-1 [10.4 kB]
Get: 206 http://deb.debian.org/debian unstable/main amd64 python3-docutils all 0.21.2+dfsg-2 [403 kB]
Get: 207 http://deb.debian.org/debian unstable/main amd64 python3-imagesize all 1.4.1-1 [6688 B]
Get: 208 http://deb.debian.org/debian unstable/main amd64 python3-markupsafe amd64 2.1.5-1+b2 [13.9 kB]
Get: 209 http://deb.debian.org/debian unstable/main amd64 python3-jinja2 all 3.1.3-2 [120 kB]
Get: 210 http://deb.debian.org/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB]
Get: 211 http://deb.debian.org/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-2 [836 kB]
Get: 212 http://deb.debian.org/debian unstable/main amd64 python3-certifi all 2024.12.14+ds-1 [9624 B]
Get: 213 http://deb.debian.org/debian unstable/main amd64 python3-charset-normalizer amd64 3.4.0-1+b1 [140 kB]
Get: 214 http://deb.debian.org/debian unstable/main amd64 python3-idna all 3.8-2 [41.6 kB]
Get: 215 http://deb.debian.org/debian unstable/main amd64 python3-urllib3 all 2.3.0-1 [114 kB]
Get: 216 http://deb.debian.org/debian unstable/main amd64 python3-chardet all 5.2.0+dfsg-2 [108 kB]
Get: 217 http://deb.debian.org/debian unstable/main amd64 python3-requests all 2.32.3+dfsg-1 [71.9 kB]
Get: 218 http://deb.debian.org/debian unstable/main amd64 python3-snowballstemmer all 2.2.0-4 [58.0 kB]
Get: 219 http://deb.debian.org/debian unstable/main amd64 python3-sphinx all 8.1.3-4 [468 kB]
Get: 220 http://deb.debian.org/debian unstable/main amd64 libpmix-dev amd64 5.0.6-1 [3962 kB]
Get: 221 http://deb.debian.org/debian unstable/main amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get: 222 http://deb.debian.org/debian unstable/main amd64 openmpi-bin amd64 5.0.6-3 [188 kB]
Get: 223 http://deb.debian.org/debian unstable/main amd64 libopenmpi-dev amd64 5.0.6-3 [1088 kB]
Get: 224 http://deb.debian.org/debian unstable/main amd64 mpi-default-dev amd64 1.18 [3372 B]
Get: 225 http://deb.debian.org/debian unstable/main amd64 libboost-mpi1.83-dev amd64 1.83.0-4 [290 kB]
Get: 226 http://deb.debian.org/debian unstable/main amd64 libboost-mpi-dev amd64 1.83.0.2+b2 [3680 B]
Get: 227 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4 [347 kB]
Get: 228 http://deb.debian.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4 [375 kB]
Get: 229 http://deb.debian.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B]
Get: 230 http://deb.debian.org/debian unstable/main amd64 libboost-serialization-dev amd64 1.83.0.2+b2 [3832 B]
Get: 231 http://deb.debian.org/debian unstable/main amd64 libboost-system-dev amd64 1.83.0.2+b2 [3736 B]
Get: 232 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83.0 amd64 1.83.0-4 [269 kB]
Get: 233 http://deb.debian.org/debian unstable/main amd64 libboost-thread1.83-dev amd64 1.83.0-4 [276 kB]
Get: 234 http://deb.debian.org/debian unstable/main amd64 libboost-thread-dev amd64 1.83.0.2+b2 [3624 B]
Get: 235 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83.0 amd64 1.83.0-4 [235 kB]
Get: 236 http://deb.debian.org/debian unstable/main amd64 libboost-timer1.83-dev amd64 1.83.0-4 [236 kB]
Get: 237 http://deb.debian.org/debian unstable/main amd64 libboost-timer-dev amd64 1.83.0.2+b2 [3716 B]
Get: 238 http://deb.debian.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b6 [316 kB]
Get: 239 http://deb.debian.org/debian unstable/main amd64 libbtf2 amd64 1:7.8.3+dfsg-2 [24.7 kB]
Get: 240 http://deb.debian.org/debian unstable/main amd64 libc6-dbg amd64 2.40-5 [7180 kB]
Get: 241 http://deb.debian.org/debian unstable/main amd64 libcamd3 amd64 1:7.8.3+dfsg-2 [37.5 kB]
Get: 242 http://deb.debian.org/debian unstable/main amd64 libccolamd3 amd64 1:7.8.3+dfsg-2 [39.2 kB]
Get: 243 http://deb.debian.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB]
Get: 244 http://deb.debian.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB]
Get: 245 http://deb.debian.org/debian unstable/main amd64 libmpfr-dev amd64 4.2.1-1+b2 [268 kB]
Get: 246 http://deb.debian.org/debian unstable/main amd64 libcgal-dev amd64 6.0.1-1 [5115 kB]
Get: 247 http://deb.debian.org/debian unstable/main amd64 libcolamd3 amd64 1:7.8.3+dfsg-2 [32.5 kB]
Get: 248 http://deb.debian.org/debian unstable/main amd64 libcholmod5 amd64 1:7.8.3+dfsg-2 [638 kB]
Get: 249 http://deb.debian.org/debian unstable/main amd64 libcombblas2.0.0t64 amd64 2.0.0-6+b2 [265 kB]
Get: 250 http://deb.debian.org/debian unstable/main amd64 libidn2-dev amd64 2.3.7-2+b1 [123 kB]
Get: 251 http://deb.debian.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-4 [15.9 kB]
Get: 252 http://deb.debian.org/debian unstable/main amd64 libldap-dev amd64 2.6.9+dfsg-1 [307 kB]
Get: 253 http://deb.debian.org/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get: 254 http://deb.debian.org/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get: 255 http://deb.debian.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB]
Get: 256 http://deb.debian.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1 [115 kB]
Get: 257 http://deb.debian.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB]
Get: 258 http://deb.debian.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB]
Get: 259 http://deb.debian.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.8-2 [449 kB]
Get: 260 http://deb.debian.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.8-2 [449 kB]
Get: 261 http://deb.debian.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB]
Get: 262 http://deb.debian.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.19.0-3+b3 [98.9 kB]
Get: 263 http://deb.debian.org/debian unstable/main amd64 nettle-dev amd64 3.10-1+b1 [1317 kB]
Get: 264 http://deb.debian.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.8-2 [1391 kB]
Get: 265 http://deb.debian.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB]
Get: 266 http://deb.debian.org/debian unstable/main amd64 libssl-dev amd64 3.4.0-2 [2790 kB]
Get: 267 http://deb.debian.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB]
Get: 268 http://deb.debian.org/debian unstable/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [365 kB]
Get: 269 http://deb.debian.org/debian unstable/main amd64 libcurl4-openssl-dev amd64 8.11.1-1+b1 [463 kB]
Get: 270 http://deb.debian.org/debian unstable/main amd64 libcxsparse4 amd64 1:7.8.3+dfsg-2 [84.2 kB]
Get: 271 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev-common all 2019.2.0~legacy20240219.1c52e83-16 [222 kB]
Get: 272 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-3 [1395 kB]
Get: 273 http://deb.debian.org/debian unstable/main amd64 libfftw3-double3 amd64 3.3.10-2+b1 [781 kB]
Get: 274 http://deb.debian.org/debian unstable/main amd64 libfftw3-long3 amd64 3.3.10-2+b1 [347 kB]
Get: 275 http://deb.debian.org/debian unstable/main amd64 libfftw3-single3 amd64 3.3.10-2+b1 [809 kB]
Get: 276 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi3 amd64 3.3.10-2+b1 [63.0 kB]
Get: 277 http://deb.debian.org/debian unstable/main amd64 libmetis5 amd64 5.1.0.dfsg-7+b2 [176 kB]
Get: 278 http://deb.debian.org/debian unstable/main amd64 libptscotch-7.0 amd64 7.0.6-1 [660 kB]
Get: 279 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist8 amd64 8.2.1+dfsg1-5+b1 [611 kB]
Get: 280 http://deb.debian.org/debian unstable/main amd64 libhypre-2.32.0 amd64 2.32.0-4 [1717 kB]
Get: 281 http://deb.debian.org/debian unstable/main amd64 libklu2 amd64 1:7.8.3+dfsg-2 [90.6 kB]
Get: 282 http://deb.debian.org/debian unstable/main amd64 mpi-default-bin amd64 1.18 [2576 B]
Get: 283 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi2.2 amd64 2.2.2-1 [1594 kB]
Get: 284 http://deb.debian.org/debian unstable/main amd64 libmumps-5.7 amd64 5.7.3-3+b1 [1967 kB]
Get: 285 http://deb.debian.org/debian unstable/main amd64 libspqr4 amd64 1:7.8.3+dfsg-2 [146 kB]
Get: 286 http://deb.debian.org/debian unstable/main amd64 libsuperlu7 amd64 7.0.0+dfsg1-2 [174 kB]
Get: 287 http://deb.debian.org/debian unstable/main amd64 libumfpack6 amd64 1:7.8.3+dfsg-2 [280 kB]
Get: 288 http://deb.debian.org/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get: 289 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22 amd64 3.22.2+dfsg1-1+b1 [7850 kB]
Get: 290 http://deb.debian.org/debian unstable/main amd64 libparpack2t64 amd64 3.9.1-4 [99.8 kB]
Get: 291 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22 amd64 3.22.2+dfsg1-1 [1386 kB]
Get: 292 http://deb.debian.org/debian unstable/main amd64 libdolfin2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-16 [1967 kB]
Get: 293 http://deb.debian.org/debian unstable/main amd64 pkg-config amd64 1.8.1-4 [14.0 kB]
Get: 294 http://deb.debian.org/debian unstable/main amd64 libeigen3-dev all 3.4.0-4 [1041 kB]
Get: 295 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-fortran-310 amd64 1.14.5+repack-3 [113 kB]
Get: 296 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-310 amd64 1.14.5+repack-3 [69.3 kB]
Get: 297 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-fortran-310 amd64 1.14.5+repack-3 [43.9 kB]
Get: 298 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-cpp-310 amd64 1.14.5+repack-3 [133 kB]
Get: 299 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-hl-cpp-310 amd64 1.14.5+repack-3 [24.4 kB]
Get: 300 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo amd64 1:2.1.5-3+b1 [168 kB]
Get: 301 http://deb.debian.org/debian unstable/main amd64 libjpeg62-turbo-dev amd64 1:2.1.5-3+b1 [292 kB]
Get: 302 http://deb.debian.org/debian unstable/main amd64 libjpeg-dev amd64 1:2.1.5-3+b1 [72.2 kB]
Get: 303 http://deb.debian.org/debian unstable/main amd64 libhdf5-openmpi-dev amd64 1.14.5+repack-3 [3267 kB]
Get: 304 http://deb.debian.org/debian unstable/main amd64 libhdf5-mpi-dev amd64 1.14.5+repack-3 [18.7 kB]
Get: 305 http://deb.debian.org/debian unstable/main amd64 libldl3 amd64 1:7.8.3+dfsg-2 [24.5 kB]
Get: 306 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-mongoose3 amd64 1:7.8.3+dfsg-2 [47.3 kB]
Get: 307 http://deb.debian.org/debian unstable/main amd64 librbio4 amd64 1:7.8.3+dfsg-2 [39.9 kB]
Get: 308 http://deb.debian.org/debian unstable/main amd64 libspex3 amd64 1:7.8.3+dfsg-2 [59.9 kB]
Get: 309 http://deb.debian.org/debian unstable/main amd64 libparu1 amd64 1:7.8.3+dfsg-2 [65.1 kB]
Get: 310 http://deb.debian.org/debian unstable/main amd64 libsuitesparse-dev amd64 1:7.8.3+dfsg-2 [1476 kB]
Get: 311 http://deb.debian.org/debian unstable/main amd64 libscotch-7.0 amd64 7.0.6-1 [413 kB]
Get: 312 http://deb.debian.org/debian unstable/main amd64 libscotch-dev amd64 7.0.6-1 [1584 kB]
Get: 313 http://deb.debian.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [795 kB]
Get: 314 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 1:1.26.4+ds-13 [4736 kB]
Get: 315 http://deb.debian.org/debian unstable/main amd64 python3-mpi4py amd64 4.0.1-7 [996 kB]
Get: 316 http://deb.debian.org/debian unstable/main amd64 python3-dijitso all 2019.2.0~git20190418.c92dcb0-4 [24.5 kB]
Get: 317 http://deb.debian.org/debian unstable/main amd64 python3-mpmath all 1.3.0-1 [419 kB]
Get: 318 http://deb.debian.org/debian unstable/main amd64 python3-sympy all 1.13.3-1 [4147 kB]
Get: 319 http://deb.debian.org/debian unstable/main amd64 python3-fiat all 2019.2.0~git20210419.7d418fa-5 [69.7 kB]
Get: 320 http://deb.debian.org/debian unstable/main amd64 python3-ufl-legacy all 1:2022.3.0-3 [158 kB]
Get: 321 http://deb.debian.org/debian unstable/main amd64 python3-ffc all 2019.2.0~legacy20230509.35df986-3 [232 kB]
Get: 322 http://deb.debian.org/debian unstable/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB]
Get: 323 http://deb.debian.org/debian unstable/main amd64 libptscotch-dev amd64 7.0.6-1 [1394 kB]
Get: 324 http://deb.debian.org/debian unstable/main amd64 libscalapack-openmpi-dev amd64 2.2.2-1 [11.1 kB]
Get: 325 http://deb.debian.org/debian unstable/main amd64 libscalapack-mpi-dev amd64 2.2.2-1 [6264 B]
Get: 326 http://deb.debian.org/debian unstable/main amd64 libfftw3-quad3 amd64 3.3.10-2+b1 [618 kB]
Get: 327 http://deb.debian.org/debian unstable/main amd64 libfftw3-bin amd64 3.3.10-2+b1 [51.3 kB]
Get: 328 http://deb.debian.org/debian unstable/main amd64 libfftw3-dev amd64 3.3.10-2+b1 [2118 kB]
Get: 329 http://deb.debian.org/debian unstable/main amd64 libfftw3-mpi-dev amd64 3.3.10-2+b1 [67.8 kB]
Get: 330 http://deb.debian.org/debian unstable/main amd64 opencl-c-headers all 3.0~2024.10.24-2 [46.8 kB]
Get: 331 http://deb.debian.org/debian unstable/main amd64 opencl-clhpp-headers all 3.0~2024.10.24-2 [50.7 kB]
Get: 332 http://deb.debian.org/debian unstable/main amd64 ocl-icd-opencl-dev amd64 2.3.2-1+b2 [8672 B]
Get: 333 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dev amd64 7.0.0+dfsg1-2 [21.9 kB]
Get: 334 http://deb.debian.org/debian unstable/main amd64 libsuperlu-dist-dev amd64 8.2.1+dfsg1-5+b1 [904 kB]
Get: 335 http://deb.debian.org/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get: 336 http://deb.debian.org/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB]
Get: 337 http://deb.debian.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB]
Get: 338 http://deb.debian.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB]
Get: 339 http://deb.debian.org/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB]
Get: 340 http://deb.debian.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB]
Get: 341 http://deb.debian.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.10-2 [891 kB]
Get: 342 http://deb.debian.org/debian unstable/main amd64 libyaml-dev amd64 0.2.5-2 [63.4 kB]
Get: 343 http://deb.debian.org/debian unstable/main amd64 libpetsc3.22-dev-common all 3.22.2+dfsg1-1 [311 kB]
Get: 344 http://deb.debian.org/debian unstable/main amd64 libhypre-dev amd64 2.32.0-4 [1988 kB]
Get: 345 http://deb.debian.org/debian unstable/main amd64 libmumps-headers-dev all 5.7.3-3 [36.3 kB]
Get: 346 http://deb.debian.org/debian unstable/main amd64 libmumps-dev amd64 5.7.3-3+b1 [1863 kB]
Get: 347 http://deb.debian.org/debian unstable/main amd64 valgrind amd64 1:3.20.0-2.1 [14.3 MB]
Get: 348 http://deb.debian.org/debian unstable/main amd64 valgrind-mpi amd64 1:3.20.0-2.1 [123 kB]
Get: 349 http://deb.debian.org/debian unstable/main amd64 libpetsc-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7948 kB]
Get: 350 http://deb.debian.org/debian unstable/main amd64 libparpack2-dev amd64 3.9.1-4 [112 kB]
Get: 351 http://deb.debian.org/debian unstable/main amd64 libslepc-real3.22-dev amd64 3.22.2+dfsg1-1 [6394 kB]
Get: 352 http://deb.debian.org/debian unstable/main amd64 libdolfin-dev amd64 2019.2.0~legacy20240219.1c52e83-16 [52.1 kB]
Get: 353 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0-pthread amd64 0.3.28+ds-4 [6780 kB]
Get: 354 http://deb.debian.org/debian unstable/main amd64 liblapack64-3 amd64 3.12.0-4 [2346 kB]
Get: 355 http://deb.debian.org/debian unstable/main amd64 libhypre64m-2.32.0 amd64 2.32.0-4 [1579 kB]
Get: 356 http://deb.debian.org/debian unstable/main amd64 libmumps-64pord-5.7 amd64 5.7.3-3+b1 [1963 kB]
Get: 357 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22 amd64 3.22.2+dfsg1-1+b1 [7783 kB]
Get: 358 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22 amd64 3.22.2+dfsg1-1 [1381 kB]
Get: 359 http://deb.debian.org/debian unstable/main amd64 libdolfin64-2019.2t64 amd64 2019.2.0~legacy20240219.1c52e83-16 [1967 kB]
Get: 360 http://deb.debian.org/debian unstable/main amd64 libopenblas64-0 amd64 0.3.28+ds-4 [39.8 kB]
Get: 361 http://deb.debian.org/debian unstable/main amd64 libopenblas64-pthread-dev amd64 0.3.28+ds-4 [4762 kB]
Get: 362 http://deb.debian.org/debian unstable/main amd64 libopenblas64-dev amd64 0.3.28+ds-4 [39.9 kB]
Get: 363 http://deb.debian.org/debian unstable/main amd64 libhypre64m-dev amd64 2.32.0-4 [1831 kB]
Get: 364 http://deb.debian.org/debian unstable/main amd64 libmumps64-dev amd64 5.7.3-3+b1 [1861 kB]
Get: 365 http://deb.debian.org/debian unstable/main amd64 libpetsc64-real3.22-dev amd64 3.22.2+dfsg1-1+b1 [7977 kB]
Get: 366 http://deb.debian.org/debian unstable/main amd64 libslepc64-real3.22-dev amd64 3.22.2+dfsg1-1 [6441 kB]
Get: 367 http://deb.debian.org/debian unstable/main amd64 libdolfin64-dev amd64 2019.2.0~legacy20240219.1c52e83-16 [44.7 kB]
Get: 368 http://deb.debian.org/debian unstable/main amd64 libexpat1-dev amd64 2.6.4-1 [158 kB]
Get: 369 http://deb.debian.org/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB]
Get: 370 http://deb.debian.org/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB]
Get: 371 http://deb.debian.org/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB]
Get: 372 http://deb.debian.org/debian unstable/main amd64 libpython3.13 amd64 3.13.1-3 [2151 kB]
Get: 373 http://deb.debian.org/debian unstable/main amd64 libpython3.13-dev amd64 3.13.1-3 [5013 kB]
Get: 374 http://deb.debian.org/debian unstable/main amd64 libpython3-dev amd64 3.13.1-2 [10.2 kB]
Get: 375 http://deb.debian.org/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-5 [1971 kB]
Get: 376 http://deb.debian.org/debian unstable/main amd64 libpython3.12t64 amd64 3.12.8-5 [2150 kB]
Get: 377 http://deb.debian.org/debian unstable/main amd64 libpython3.12-dev amd64 3.12.8-5 [5136 kB]
Get: 378 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dev amd64 3.13.1-2 [1072 B]
Get: 379 http://deb.debian.org/debian unstable/main amd64 libtet1.5 amd64 1.5.0-5+b2 [239 kB]
Get: 380 http://deb.debian.org/debian unstable/main amd64 libtet1.5-dev amd64 1.5.0-5+b2 [29.9 kB]
Get: 381 http://deb.debian.org/debian unstable/main amd64 pybind11-dev all 2.13.6-1 [204 kB]
Get: 382 http://deb.debian.org/debian unstable/main amd64 python-petsc4py-doc all 3.22.1-2 [778 kB]
Get: 383 http://deb.debian.org/debian unstable/main amd64 python3.12 amd64 3.12.8-5 [677 kB]
Get: 384 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 3.13.1-2 [1056 B]
Get: 385 http://deb.debian.org/debian unstable/main amd64 python3.13-dev amd64 3.13.1-3 [507 kB]
Get: 386 http://deb.debian.org/debian unstable/main amd64 python3-dev amd64 3.13.1-2 [26.1 kB]
Get: 387 http://deb.debian.org/debian unstable/main amd64 python3.12-dev amd64 3.12.8-5 [505 kB]
Get: 388 http://deb.debian.org/debian unstable/main amd64 python3-all-dev amd64 3.13.1-2 [1076 B]
Get: 389 http://deb.debian.org/debian unstable/main amd64 swig amd64 4.3.0-0.1 [1502 kB]
Get: 390 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real3.22 amd64 3.22.1-2 [1994 kB]
Get: 391 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-real all 3.22.1-2 [10.7 kB]
Get: 392 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real3.22 amd64 3.22.1-2 [1989 kB]
Get: 393 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py-64-real all 3.22.1-2 [10.6 kB]
Get: 394 http://deb.debian.org/debian unstable/main amd64 python3-petsc4py all 3.22.1-2 [10.9 kB]
Get: 395 http://deb.debian.org/debian unstable/main amd64 python3-pybind11 all 2.13.6-1 [215 kB]
Get: 396 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real3.22 amd64 3.22.1-2 [492 kB]
Get: 397 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-real all 3.22.1-2 [6616 B]
Get: 398 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real3.22 amd64 3.22.1-2 [491 kB]
Get: 399 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py-64-real all 3.22.1-2 [6592 B]
Get: 400 http://deb.debian.org/debian unstable/main amd64 python3-slepc4py all 3.22.1-2 [6808 B]
Fetched 375 MB in 10s (38.7 MB/s)
Preconfiguring packages ...
Selecting previously unselected package libpython3.13-minimal:amd64.
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Setting up comerr-dev:amd64 (2.1-1.47.2-1) ...
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Setting up libssl-dev:amd64 (3.4.0-2) ...
Setting up libhwloc15:amd64 (2.11.2-1) ...
Setting up autopoint (0.23.1-1) ...
Setting up icu-devtools (72.1-6) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libk5crypto3:amd64 (1.21.3-4) ...
Setting up libltdl7:amd64 (2.5.4-2) ...
Setting up opencl-c-headers (3.0~2024.10.24-2) ...
Setting up libfftw3-double3:amd64 (3.3.10-2+b1) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-8+b1) ...
Setting up libgfortran5:amd64 (14.2.0-14) ...
Setting up libboost-atomic1.83-dev:amd64 (1.83.0-4) ...
Setting up autoconf (2.72-3) ...
Setting up libmumps-headers-dev (5.7.3-3) ...
Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libffi8:amd64 (3.4.6-1) ...
Setting up libnuma1:amd64 (2.0.18-1+b1) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.24) ...
Setting up ocl-icd-libopencl1:amd64 (2.3.2-1+b2) ...
Setting up libtet1.5:amd64 (1.5.0-5+b2) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-6) ...
Setting up libjson-perl (4.10000-1) ...
Setting up libnl-3-200:amd64 (3.7.0-0.3+b1) ...
Setting up libpsm2-2 (11.2.185-2.1) ...
Setting up openmpi-common (5.0.6-3) ...
Setting up libtasn1-6:amd64 (4.19.0-3+b3) ...
Setting up libsuitesparseconfig7:amd64 (1:7.8.3+dfsg-2) ...
Setting up libx11-6:amd64 (2:1.8.10-2) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.4) ...
Setting up libtet1.5-dev:amd64 (1.5.0-5+b2) ...
Setting up sgml-base (1.31) ...
Setting up cmake-data (3.31.4-2) ...
Setting up librhash1:amd64 (1.4.5-1) ...
Setting up libkrb5-3:amd64 (1.21.3-4) ...
Setting up libboost-dev:amd64 (1.83.0.2+b2) ...
Setting up libevent-core-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Setting up libboost-system1.83-dev:amd64 (1.83.0-4) ...
Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ...
update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libboost-math1.83.0:amd64 (1.83.0-4) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libfido2-1:amd64 (1.15.0-1+b1) ...
Setting up valgrind (1:3.20.0-2.1) ...
Setting up libtasn1-6-dev:amd64 (4.19.0-3+b3) ...
Setting up openssl (3.4.0-2) ...
Setting up libdrm-common (2.4.123-1) ...
Setting up valgrind-mpi (1:3.20.0-2.1) ...
Setting up readline-common (8.2-6) ...
Setting up libicu-dev:amd64 (72.1-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libldap2:amd64 (2.6.9+dfsg-1) ...
Setting up libbrotli-dev:amd64 (1.1.0-2+b6) ...
Setting up libblas-dev:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode
Setting up libsz2:amd64 (1.1.3-1+b1) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up libblas64-3:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/blas64/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libgfortran-14-dev:amd64 (14.2.0-14) ...
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.14.1-1) ...
Setting up python3.12-minimal (3.12.8-5) ...
Setting up liblapack3:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
Setting up gettext (0.23.1-1) ...
Setting up libarpack2t64:amd64 (3.9.1-4) ...
Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ...
Setting up libamd3:amd64 (1:7.8.3+dfsg-2) ...
Setting up libxau-dev:amd64 (1:1.0.11-1) ...
Setting up libboost-chrono1.83-dev:amd64 (1.83.0-4) ...
Setting up nettle-dev:amd64 (3.10-1+b1) ...
Setting up libyaml-dev:amd64 (0.2.5-2) ...
Setting up libboost-math1.83-dev:amd64 (1.83.0-4) ...
Setting up libtool (2.5.4-2) ...
Setting up libcolamd3:amd64 (1:7.8.3+dfsg-2) ...
Setting up libspex3:amd64 (1:7.8.3+dfsg-2) ...
Setting up libboost-chrono-dev:amd64 (1.83.0.2+b2) ...
Setting up libfftw3-bin (3.3.10-2+b1) ...
Setting up libsuitesparse-mongoose3:amd64 (1:7.8.3+dfsg-2) ...
Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Setting up libboost-math-dev:amd64 (1.83.0.2+b2) ...
Setting up libopenblas64-0-pthread:amd64 (0.3.28+ds-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas64.so.3 (libblas64.so.3-x86_64-linux-gnu) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack64.so.3 (liblapack64.so.3-x86_64-linux-gnu) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so.0 (libopenblas64.so.0-x86_64-linux-gnu) in auto mode
Setting up libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Setting up libboost-system-dev:amd64 (1.83.0.2+b2) ...
Setting up libaec-dev:amd64 (1.1.3-1+b1) ...
Setting up libcxsparse4:amd64 (1:7.8.3+dfsg-2) ...
Setting up libboost-serialization1.83-dev:amd64 (1.83.0-4) ...
Setting up libjpeg-dev:amd64 (1:2.1.5-3+b1) ...
Setting up libxext6:amd64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:amd64 (2.3.7-2+b1) ...
Setting up libopenblas64-pthread-dev:amd64 (0.3.28+ds-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libblas64.so to provide /usr/lib/x86_64-linux-gnu/libblas64.so (libblas64.so-x86_64-linux-gnu) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/liblapack64.so to provide /usr/lib/x86_64-linux-gnu/liblapack64.so (liblapack64.so-x86_64-linux-gnu) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas64-pthread/libopenblas64.so to provide /usr/lib/x86_64-linux-gnu/libopenblas64.so (libopenblas64.so-x86_64-linux-gnu) in auto mode
Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-4) ...
Setting up liblapack64-3:amd64 (3.12.0-4) ...
Setting up libmpfr-dev:amd64 (4.2.1-1+b2) ...
Setting up libcamd3:amd64 (1:7.8.3+dfsg-2) ...
Setting up libsuperlu7:amd64 (7.0.0+dfsg1-2) ...
Setting up gfortran-14-x86-64-linux-gnu (14.2.0-14) ...
Setting up pkgconf:amd64 (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libnuma-dev:amd64 (2.0.18-1+b1) ...
Setting up libnl-route-3-200:amd64 (3.7.0-0.3+b1) ...
Setting up libxnvctrl0:amd64 (535.171.04-1+b1) ...
Setting up dh-autoreconf (20) ...
Setting up libltdl-dev:amd64 (2.5.4-2) ...
Setting up ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
152 added, 0 removed; done.
Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ...
Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-0.2+b1) ...
Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
Setting up libboost-timer1.83-dev:amd64 (1.83.0-4) ...
Setting up libllvm17t64:amd64 (1:17.0.6-20+b1) ...
Setting up librbio4:amd64 (1:7.8.3+dfsg-2) ...
Setting up libboost-date-time1.83-dev:amd64 (1.83.0-4) ...
Setting up libldap-dev:amd64 (2.6.9+dfsg-1) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up opencl-clhpp-headers (3.0~2024.10.24-2) ...
Setting up liblapack-dev:amd64 (3.12.0-4) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode
Setting up libeigen3-dev (3.4.0-4) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-4) ...
Setting up libboost-regex1.83-dev:amd64 (1.83.0-4) ...
Setting up pkg-config:amd64 (1.8.1-4) ...
Setting up libboost-serialization-dev:amd64 (1.83.0.2+b2) ...
Setting up libssh2-1-dev:amd64 (1.11.1-1) ...
Setting up libidn2-dev:amd64 (2.3.7-2+b1) ...
Setting up libjs-sphinxdoc (8.1.3-4) ...
Setting up ocl-icd-opencl-dev:amd64 (2.3.2-1+b2) ...
Setting up libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10+b1) ...
Setting up libccolamd3:amd64 (1:7.8.3+dfsg-2) ...
Setting up libreadline8t64:amd64 (8.2-6) ...
Setting up dh-strip-nondeterminism (1.14.1-1) ...
Setting up libopenblas64-0:amd64 (0.3.28+ds-4) ...
Setting up libdrm2:amd64 (2.4.123-1) ...
Setting up libnl-3-dev:amd64 (3.7.0-0.3+b1) ...
Setting up groff-base (1.23.0-7) ...
Setting up xml-core (0.19) ...
Setting up libhwloc-dev:amd64 (2.11.2-1) ...
Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3+b2) ...
Setting up gfortran-14 (14.2.0-14) ...
Setting up libsuperlu-dev:amd64 (7.0.0+dfsg1-2) ...
Setting up libarchive13t64:amd64 (3.7.4-1.1) ...
Setting up libpython3.13-stdlib:amd64 (3.13.1-3) ...
Setting up libfftw3-dev:amd64 (3.3.10-2+b1) ...
Setting up libboost-timer-dev:amd64 (1.83.0.2+b2) ...
Setting up libboost-filesystem-dev:amd64 (1.83.0.2+b2) ...
Setting up libp11-kit-dev:amd64 (0.25.5-3) ...
Setting up libpython3-stdlib:amd64 (3.13.1-2) ...
Setting up libdrm-amdgpu1:amd64 (2.4.123-1) ...
Setting up libpython3.13:amd64 (3.13.1-3) ...
Setting up libgnutls30t64:amd64 (3.8.8-2) ...
Setting up libboost-thread1.83-dev:amd64 (1.83.0-4) ...
Setting up libgnutls-openssl27t64:amd64 (3.8.8-2) ...
Setting up libnghttp2-dev:amd64 (1.64.0-1) ...
Setting up libibverbs1:amd64 (55.0-1) ...
Setting up libcholmod5:amd64 (1:7.8.3+dfsg-2) ...
Setting up libarpack2-dev:amd64 (3.9.1-4) ...
Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ...
Setting up libopenblas64-dev:amd64 (0.3.28+ds-4) ...
Setting up libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ...
Setting up ibverbs-providers:amd64 (55.0-1) ...
Setting up libspqr4:amd64 (1:7.8.3+dfsg-2) ...
Setting up python3.13 (3.13.1-3) ...
Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-4) ...
Setting up openssh-client (1:9.9p1-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libx11-dev:amd64 (2:1.8.10-2) ...
Setting up python3 (3.13.1-2) ...
/usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l'
  axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence')
/usr/share/petsc/3.22/lib/petsc/bin/petsc_tas_analysis.py:779: SyntaxWarning: invalid escape sequence '\l'
  axMeshConv.set(xlabel='Problem Size $\log N$', ylabel='Error $\log |x - x^*|$', title='Mesh Convergence')
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:253: SyntaxWarning: invalid escape sequence '\d'
  print("\documentclass{article}")
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:256: SyntaxWarning: invalid escape sequence '\c'
  print("\centering")
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:259: SyntaxWarning: invalid escape sequence '\m'
  print(" &  & \multicolumn{4}{c}{--------------- Percent of -------------} &  \\\\")
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:261: SyntaxWarning: invalid escape sequence '\h'
  print("\hline")
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:321: SyntaxWarning: invalid escape sequence '\e'
  print("\end{tabular}")
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:322: SyntaxWarning: invalid escape sequence '\e'
  print("\end{table}")
/usr/share/petsc/3.22/lib/petsc/bin/petsclogformat.py:323: SyntaxWarning: invalid escape sequence '\e'
  print("\end{document}")
Setting up libboost-iostreams-dev:amd64 (1.83.0.2+b2) ...
Setting up python3-zipp (3.21.0-1) ...
Setting up python3-autocommand (2.2.2-3) ...
Setting up libhwloc-plugins:amd64 (2.11.2-1) ...
Setting up man-db (2.13.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-markupsafe (2.1.5-1+b2) ...
Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1) ...
Setting up gfortran (4:14.2.0-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ...
Setting up libnl-route-3-dev:amd64 (3.7.0-0.3+b1) ...
Setting up python3-roman (4.2-1) ...
Setting up python3-jinja2 (3.1.3-2) ...
Setting up python3-pygments (2.18.0+dfsg-2) ...
Setting up python3-packaging (24.2-1) ...
Setting up python3-chardet (5.2.0+dfsg-2) ...
Setting up libgnutls-dane0t64:amd64 (3.8.8-2) ...
Setting up python3-certifi (2024.12.14+ds-1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up python3-snowballstemmer (2.2.0-4) ...
Setting up libklu2:amd64 (1:7.8.3+dfsg-2) ...
Setting up libgssrpc4t64:amd64 (1.21.3-4) ...
Setting up libpython3.13-dev:amd64 (3.13.1-3) ...
Setting up sphinx-common (8.1.3-4) ...
Setting up libevent-dev (2.1.12-stable-10+b1) ...
Setting up python3-idna (3.8-2) ...
Setting up python3-typing-extensions (4.12.2-2) ...
Setting up libpmix2t64:amd64 (5.0.6-1) ...
Setting up python3-numpy (1:1.26.4+ds-13) ...
Setting up python3-urllib3 (2.3.0-1) ...
Setting up libumfpack6:amd64 (1:7.8.3+dfsg-2) ...
Setting up python3-ufl-legacy (1:2022.3.0-3) ...
Setting up libnsl2:amd64 (1.3.0-3+b3) ...
Setting up librdmacm1t64:amd64 (55.0-1) ...
Setting up python3-mpmath (1.3.0-1) ...
Setting up libhsakmt1:amd64 (6.1.2+ds-1) ...
Setting up libboost-thread-dev:amd64 (1.83.0.2+b2) ...
Setting up libkadm5clnt-mit12:amd64 (1.21.3-4) ...
Setting up python3-imagesize (1.4.1-1) ...
Setting up libgnutls28-dev:amd64 (3.8.8-2) ...
Setting up python3-more-itertools (10.6.0-1) ...
Setting up libfabric1:amd64 (1.17.0-3.1) ...
Setting up python3-sympy (1.13.3-1) ...
Setting up python3-fiat (2019.2.0~git20210419.7d418fa-5) ...
Setting up libpython3-dev:amd64 (3.13.1-2) ...
Setting up python3-jaraco.functools (4.1.0-1) ...
Setting up libpython3.12-stdlib:amd64 (3.12.8-5) ...
Setting up python3-jaraco.context (6.0.0-1) ...
Setting up libcurl4t64:amd64 (8.11.1-1+b1) ...
Setting up libkdb5-10t64:amd64 (1.21.3-4) ...
Setting up python3-defusedxml (0.7.1-3) ...
Setting up python3-charset-normalizer (3.4.0-1+b1) ...
Setting up python3.13-dev (3.13.1-3) ...
Setting up python3-alabaster (0.7.16-0.1) ...
Setting up python3.12 (3.12.8-5) ...
Setting up python3-typeguard (4.4.1-1) ...
Setting up python3-all (3.13.1-2) ...
Setting up debhelper (13.24.1) ...
Setting up python-petsc4py-doc (3.22.1-2) ...
Setting up libibverbs-dev:amd64 (55.0-1) ...
Setting up libparu1:amd64 (1:7.8.3+dfsg-2) ...
Setting up pybind11-dev (2.13.6-1) ...
Setting up libcgal-dev:amd64 (6.0.1-1) ...
Setting up libpython3.12t64:amd64 (3.12.8-5) ...
Setting up python3-inflect (7.3.1-2) ...
Setting up python3-jaraco.text (4.0.0-1) ...
Setting up python3-dev (3.13.1-2) ...
Setting up python3-requests (2.32.3+dfsg-1) ...
Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libhsa-runtime64-1:amd64 (6.1.2-2) ...
Setting up libkadm5srv-mit12:amd64 (1.21.3-4) ...
Setting up cmake (3.31.4-2) ...
Setting up python3-pybind11 (2.13.6-1) ...
Setting up krb5-multidev:amd64 (1.21.3-4) ...
Setting up python3-pkg-resources (75.6.0-1) ...
Setting up python3-setuptools (75.6.0-1) ...
Setting up libsuitesparse-dev:amd64 (1:7.8.3+dfsg-2) ...
Setting up python3-babel (2.16.0-1) ...
update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode
Setting up libpython3.12-dev:amd64 (3.12.8-5) ...
Setting up libkrb5-dev:amd64 (1.21.3-4) ...
Setting up libamdhip64-5 (5.7.1-5) ...
Setting up libcurl4-openssl-dev:amd64 (8.11.1-1+b1) ...
Setting up libpython3-all-dev:amd64 (3.13.1-2) ...
Setting up python3.12-dev (3.12.8-5) ...
Setting up dh-python (6.20250108) ...
Setting up python3-all-dev (3.13.1-2) ...
Setting up libucx0:amd64 (1.17.0+ds-3) ...
Setting up libopenmpi40:amd64 (5.0.6-3) ...
Setting up libptscotch-7.0:amd64 (7.0.6-1) ...
Setting up libcombblas2.0.0t64:amd64 (2.0.0-6+b2) ...
Setting up libfftw3-mpi3:amd64 (3.3.10-2+b1) ...
Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ...
Setting up libhdf5-openmpi-fortran-310:amd64 (1.14.5+repack-3) ...
Setting up libparpack2t64:amd64 (3.9.1-4) ...
Setting up libboost-mpi1.83.0 (1.83.0-4) ...
Setting up openmpi-bin (5.0.6-3) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libhdf5-openmpi-hl-310:amd64 (1.14.5+repack-3) ...
Setting up libhdf5-openmpi-hl-fortran-310:amd64 (1.14.5+repack-3) ...
Setting up libhdf5-openmpi-hl-cpp-310:amd64 (1.14.5+repack-3) ...
Setting up libsuperlu-dist8:amd64 (8.2.1+dfsg1-5+b1) ...
Setting up libhdf5-openmpi-cpp-310:amd64 (1.14.5+repack-3) ...
Setting up libfftw3-mpi-dev:amd64 (3.3.10-2+b1) ...
Setting up mpi-default-bin (1.18) ...
Setting up libhypre-2.32.0:amd64 (2.32.0-4) ...
Setting up python3-mpi4py (4.0.1-7) ...
Setting up libsuperlu-dist-dev:amd64 (8.2.1+dfsg1-5+b1) ...
Setting up libhypre64m-2.32.0:amd64 (2.32.0-4) ...
Setting up libscalapack-openmpi2.2:amd64 (2.2.2-1) ...
Setting up python3-dijitso (2019.2.0~git20190418.c92dcb0-4) ...
Setting up python3-ffc (2019.2.0~legacy20230509.35df986-3) ...
Setting up libmumps-64pord-5.7:amd64 (5.7.3-3+b1) ...
Setting up libmumps-5.7:amd64 (5.7.3-3+b1) ...
Setting up libpetsc64-real3.22:amd64 (3.22.2+dfsg1-1+b1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc64.so.3.22 (libpetsc64.so.3.22) in auto mode
Setting up libscalapack-openmpi-dev:amd64 (2.2.2-1) ...
Setting up libslepc64-real3.22 (3.22.2+dfsg1-1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64.so.3.22 (libslepc64.so.3.22) in auto mode
Setting up libpetsc-real3.22:amd64 (3.22.2+dfsg1-1+b1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc.so.3.22 (libpetsc.so.3.22) in auto mode
Setting up python3-petsc4py-real3.22 (3.22.1-2) ...
Setting up python3-petsc4py-64-real3.22 (3.22.1-2) ...
Setting up python3-petsc4py-64-real (3.22.1-2) ...
Setting up libdolfin64-2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-16) ...
Setting up python3-petsc4py (3.22.1-2) ...
Setting up libslepc-real3.22 (3.22.2+dfsg1-1) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc.so.3.22 (libslepc.so.3.22) in auto mode
Setting up python3-petsc4py-real (3.22.1-2) ...
Setting up libdolfin2019.2t64:amd64 (2019.2.0~legacy20240219.1c52e83-16) ...
Setting up python3-slepc4py-64-real3.22 (3.22.1-2) ...
Setting up python3-slepc4py-real3.22 (3.22.1-2) ...
Setting up python3-slepc4py (3.22.1-2) ...
Setting up python3-slepc4py-real (3.22.1-2) ...
Setting up python3-slepc4py-64-real (3.22.1-2) ...
Processing triggers for libc-bin (2.40-5) ...
Processing triggers for sgml-base (1.31) ...
Setting up docutils-common (0.21.2+dfsg-2) ...
Processing triggers for sgml-base (1.31) ...
Setting up python3-docutils (0.21.2+dfsg-2) ...
Setting up python3-sphinx (8.1.3-4) ...
Setting up libpmix-dev:amd64 (5.0.6-1) ...
Setting up libopenmpi-dev:amd64 (5.0.6-3) ...
update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode
Setting up libhdf5-openmpi-dev (1.14.5+repack-3) ...
update-alternatives: using /usr/bin/h5pcc.openmpi to provide /usr/bin/h5pcc (h5pcc) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-openmpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
update-alternatives: updating alternative /usr/bin/mpicc.openmpi because link group mpi has changed slave links
update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-mpi.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up mpi-default-dev (1.18) ...
Setting up libhypre64m-dev:amd64 (2.32.0-4) ...
Setting up libscalapack-mpi-dev:amd64 (2.2.2-1) ...
Setting up libmumps64-dev:amd64 (5.7.3-3+b1) ...
Setting up libmumps-dev:amd64 (5.7.3-3+b1) ...
Setting up libscotch-dev (7.0.6-1) ...
Setting up libparpack2-dev:amd64 (3.9.1-4) ...
Setting up libhypre-dev:amd64 (2.32.0-4) ...
Setting up libptscotch-dev (7.0.6-1) ...
Setting up libboost-mpi1.83-dev (1.83.0-4) ...
Setting up libboost-mpi-dev (1.83.0.2+b2) ...
Setting up libhdf5-mpi-dev:amd64 (1.14.5+repack-3) ...
Setting up libpetsc3.22-dev-common (3.22.2+dfsg1-1) ...
Setting up libpetsc-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ...
update-alternatives: error: no alternatives for petsc
update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc (petsc) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc_real.so (libpetsc_real.so) in auto mode
update-alternatives: using /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/3.22 (petsc3.22) in auto mode
Setting up libpetsc64-real3.22-dev:amd64 (3.22.2+dfsg1-1+b1) ...
update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petsc64 (petsc64) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/libpetsc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libpetsc64_real.so (libpetsc64_real.so) in auto mode
update-alternatives: using /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/petscdir/64-3.22 (petsc64-3.22) in auto mode
Setting up libslepc-real3.22-dev (3.22.2+dfsg1-1) ...
update-alternatives: error: no alternatives for slepc
update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc (slepc) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc_real.so (libslepc_real.so) in auto mode
update-alternatives: using /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/3.22 (slepc3.22) in auto mode
Setting up libdolfin-dev:amd64 (2019.2.0~legacy20240219.1c52e83-16) ...
Setting up libslepc64-real3.22-dev (3.22.2+dfsg1-1) ...
update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepc64 (slepc64) in auto mode
update-alternatives: using /usr/lib/x86_64-linux-gnu/libslepc64_real.so.3.22.2 to provide /usr/lib/x86_64-linux-gnu/libslepc64_real.so (libslepc64_real.so) in auto mode
update-alternatives: using /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real to provide /usr/lib/slepcdir/64bit-3.22 (slepc64-3.22) in auto mode
Setting up libdolfin64-dev:amd64 (2019.2.0~legacy20240219.1c52e83-16) ...
Processing triggers for ca-certificates (20241223) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
 -> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
fakeroot is already the newest version (1.36.2-1).
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
I: Building the package
I: Running cd /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_source.changes
dpkg-buildpackage: info: source package mshr
dpkg-buildpackage: info: source version 2019.2.0~git20230811.ff54a68+dfsg1-4
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Francesco Ballarin <francesco.ballarin@unicatt.it>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture amd64
 debian/rules clean
py3versions: no X-Python3-Version in control file, using supported versions
dh clean --buildsystem=cmake \
      --with python3 \
      --no-parallel
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
dh_auto_clean
rm -rf python/build*
rm -rf python/mshr.egg-info
rm -rf debian/tmp64
rm -rf obj-x86_64-linux-gnu obj-x86_64-linux-gnu-64
make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
   dh_autoreconf_clean -O--buildsystem=cmake -O--no-parallel
   dh_clean -O--buildsystem=cmake -O--no-parallel
 debian/rules binary
py3versions: no X-Python3-Version in control file, using supported versions
dh binary --buildsystem=cmake \
      --with python3 \
      --no-parallel
   dh_update_autotools_config -O--buildsystem=cmake -O--no-parallel
   dh_autoreconf -O--buildsystem=cmake -O--no-parallel
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/
	cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ ..
CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Targeting Unix Makefiles
-- Using /usr/bin/c++ compiler.
-- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so
-- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so
CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include)
  /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include)
  CMakeLists.txt:17 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72")
-- Boost include dirs: /usr/include
-- Boost libraries:    
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Using gcc version 4 or later. Adding -frounding-math
CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message):
  The package name passed to `find_package_handle_standard_args` (TETGEN)
  does not match the name of the calling package (TetGen).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  CMakeLists.txt:32 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so
CMake Warning (dev) at CMakeLists.txt:59 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options
-- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0")
CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:95 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for one of the modules 'craypetsc_real;petsc;PETSc'
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of PetscInt
-- Check size of PetscInt - failed
-- Checking for one of the modules 'crayslepc_real;slepc;SLEPc'
-- Testing disabled
-- Configuring done (2.2s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    CMAKE_INSTALL_LIBDIR
    CMAKE_INSTALL_LOCALSTATEDIR
    CMAKE_INSTALL_RUNSTATEDIR
    CMAKE_INSTALL_SYSCONFDIR
    FETCHCONTENT_FULLY_DISCONNECTED


-- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu
PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/ -DLIB_NAME_EXT="64" -DDOLFIN_LIB_NAME_EXT="64"
	cd obj-x86_64-linux-gnu-64 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D "CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection" /build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 ..
CMake Deprecation Warning at CMakeLists.txt:2 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Targeting Unix Makefiles
-- Using /usr/bin/c++ compiler.
-- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so
-- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so
CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48 (include)
  /usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include)
  CMakeLists.txt:17 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable version "1.83.0", minimum required is "1.72")
-- Boost include dirs: /usr/include
-- Boost libraries:    
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Using gcc version 4 or later. Adding -frounding-math
CMake Warning (dev) at /usr/share/cmake-3.31/Modules/FindPackageHandleStandardArgs.cmake:441 (message):
  The package name passed to `find_package_handle_standard_args` (TETGEN)
  does not match the name of the calling package (TetGen).  This can lead to
  problems in calling code that expects `find_package` result variables
  (e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
  cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
  CMakeLists.txt:32 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so
CMake Warning (dev) at CMakeLists.txt:59 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found Boost: /usr/include (found version "1.83.0") found components: system filesystem program_options
-- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is "3.1.0")
CMake Warning (dev) at /usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package):
  Policy CMP0167 is not set: The FindBoost module is removed.  Run "cmake
  --help-policy CMP0167" for policy details.  Use the cmake_policy command to
  set the policy and suppress this warning.

Call Stack (most recent call first):
  CMakeLists.txt:95 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for one of the modules 'craypetsc_real;petsc;PETSc'
-- Looking for sys/types.h
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-- Check size of PetscInt - failed
-- Checking for one of the modules 'crayslepc_real;slepc;SLEPc'
-- Testing disabled
-- Configuring done (1.5s)
-- Generating done (0.0s)
CMake Warning:
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    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
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-- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64
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   debian/rules override_dh_auto_build
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real dh_auto_build --builddir=obj-x86_64-linux-gnu
	cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu'
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/usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks"
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cd "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu" "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake" "--color="
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make[4]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu'
[  4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp"
[  9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp"
[ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp"
In file included from /usr/include/CGAL/AABB_traits.h:19,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33:
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)':
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations]
  855 |     typedef CGAL::No_intersection_tag Itag;
      |                                       ^~~~
In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32:
/usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here
   49 | struct CGAL_DEPRECATED No_intersection_tag :
      |                        ^~~~~~~~~~~~~~~~~~~
/usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/AABB_traits.h>` is deprecated. Please use `<CGAL/AABB_traits_3.h>` instead. '
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
[ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp"
[ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp"
In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42:
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)':
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations]
  855 |     typedef CGAL::No_intersection_tag Itag;
      |                                       ^~~~
In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32:
/usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here
   49 | struct CGAL_DEPRECATED No_intersection_tag :
      |                        ^~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp"
[ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp"
[ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp"
[ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp"
[ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp"
[ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -MF CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o.d -o CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/DolfinMeshUtils.cpp"
[ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp"
[ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp"
[ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp"
[ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp"
[ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp"
[ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp"
[ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp"
In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26,
                 from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20,
                 from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24,
                 from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20,
                 from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23,
                 from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/make_surface_mesh.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher_generator.h:21,
                 from /usr/include/CGAL/make_surface_mesh.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28,
                 from /usr/include/CGAL/Surface_mesher_generator.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22,
                 from /usr/include/CGAL/Surface_mesher_generator.h:24:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21,
                 from /usr/include/CGAL/Surface_mesher_generator.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22,
                 from /usr/include/CGAL/Surface_mesher_generator.h:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22,
                 from /usr/include/CGAL/Surface_mesher_generator.h:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20,
                 from /usr/include/CGAL/Surface_mesher_generator.h:28:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21,
                 from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22,
                 from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21,
                 from /usr/include/CGAL/Surface_mesher_generator.h:29:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21,
                 from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20,
                 from /usr/include/CGAL/make_surface_mesh.h:30:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22,
                 from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Implicit_surface_3.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22,
                 from /usr/include/CGAL/Implicit_surface_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_default_triangulation_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Robust_circumcenter_traits_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_vertex_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Complex_2_in_triangulation_vertex_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_cell_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Complex_2_in_triangulation_cell_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/make_surface_mesh.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher_generator.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Verbose_flag.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Types_generators.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Profile_counter.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Profile_timer.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_manifold.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_regular_edges.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_edges_level.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_visitor.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_traits_generator_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Sphere_oracle_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Null_oracle_visitor.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_complex_2_in_triangulation_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Complex_2_in_triangulation_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_default_criteria_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Standard_criteria.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Implicit_surface_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Implicit_surface_oracle_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
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  128 |       std::string extension = boost::filesystem::extension(vm["polyout"].as<std::string>());
      |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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      |                    ^~~~~~~~~
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/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/ASCFileReader.cpp"
[  9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain2D.cpp"
[ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp"
In file included from /usr/include/CGAL/AABB_traits.h:19,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:57:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALDomain3D.cpp:33:
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)':
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations]
  855 |     typedef CGAL::No_intersection_tag Itag;
      |                                       ^~~~
In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32:
/usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here
   49 | struct CGAL_DEPRECATED No_intersection_tag :
      |                        ^~~~~~~~~~~~~~~~~~~
/usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/AABB_traits.h>` is deprecated. Please use `<CGAL/AABB_traits_3.h>` instead. '
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
[ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator2D.cpp"
[ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp"
In file included from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGCGALMeshGenerator3D.cpp:42:
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h: In static member function 'static bool mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename Polyhedron::Halfedge_handle, bool, bool)':
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:855:39: warning: 'No_intersection_tag' is deprecated [-Wdeprecated-declarations]
  855 |     typedef CGAL::No_intersection_tag Itag;
      |                                       ^~~~
In file included from /usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Polyhedron_utils.h:32:
/usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here
   49 | struct CGAL_DEPRECATED No_intersection_tag :
      |                        ^~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometries3D.cpp"
[ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -MF CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGGeometry.cpp"
[ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -MF CMakeFiles/mshr.dir/src/CSGOperators.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGOperators.cpp"
[ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives2D.cpp"
[ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -MF CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/CSGPrimitives3D.cpp"
[ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o
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[ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -MF CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o.d -o CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/GlobalInitializer.cpp"
[ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -MF CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o.d -o CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/MeshGenerator.cpp"
[ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/Meshes.cpp.o -MF CMakeFiles/mshr.dir/src/Meshes.cpp.o.d -o CMakeFiles/mshr.dir/src/Meshes.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/Meshes.cpp"
[ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/OFFFileReader.cpp"
[ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -MF CMakeFiles/mshr.dir/src/STLFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/STLFileReader.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/STLFileReader.cpp"
[ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceConsistency.cpp"
[ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -MF CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o.d -o CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp"
In file included from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26,
                 from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20,
                 from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24,
                 from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20,
                 from /usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23,
                 from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/make_surface_mesh.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher_generator.h:21,
                 from /usr/include/CGAL/make_surface_mesh.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28,
                 from /usr/include/CGAL/Surface_mesher_generator.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22,
                 from /usr/include/CGAL/Surface_mesher_generator.h:24:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21,
                 from /usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21,
                 from /usr/include/CGAL/Surface_mesher_generator.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22,
                 from /usr/include/CGAL/Surface_mesher_generator.h:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22,
                 from /usr/include/CGAL/Surface_mesher_generator.h:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20,
                 from /usr/include/CGAL/Surface_mesher_generator.h:28:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21,
                 from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22,
                 from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21,
                 from /usr/include/CGAL/Surface_mesher_generator.h:29:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21,
                 from /usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20,
                 from /usr/include/CGAL/make_surface_mesh.h:30:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22,
                 from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Implicit_surface_3.h:20,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/SurfaceReconstruction.cpp:28:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22,
                 from /usr/include/CGAL/Implicit_surface_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning "A deprecated header has been included." [-Wcpp]
   80 | #    warning "A deprecated header has been included."
      |      ^~~~~~~
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_default_triangulation_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Robust_circumcenter_traits_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_vertex_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Complex_2_in_triangulation_vertex_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_cell_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Complex_2_in_triangulation_cell_base_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/make_surface_mesh.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher_generator.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Verbose_flag.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Types_generators.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Profile_counter.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Profile_timer.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_manifold.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_regular_edges.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_edges_level.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_visitor.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_traits_generator_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Sphere_oracle_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Null_oracle_visitor.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_complex_2_in_triangulation_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Complex_2_in_triangulation_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesh_default_criteria_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Standard_criteria.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Implicit_surface_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: '#pragma message: Warning: The header `<CGAL/Surface_mesher/Implicit_surface_oracle_3.h>` is deprecated. Additional information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/) should be used instead.'
   81 | #    pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
      |                                                      ^
[ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/src/TetgenMeshGenerator3D.cpp"
[ 90%] Linking CXX shared library libmshr64.so
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/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH -DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -I"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/include" -I/include -isystem /usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem /usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem /usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real/include -fpermissive -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -DNDEBUG -std=c++17 -MD -MT CMakeFiles/mshrable.dir/app/mshrable.cpp.o -MF CMakeFiles/mshrable.dir/app/mshrable.cpp.o.d -o CMakeFiles/mshrable.dir/app/mshrable.cpp.o -c "/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp"
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp: In function 'int main(int, char**)':
/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:128:59: warning: 'std::string boost::filesystem::extension(const path&)' is deprecated: Use path::extension() instead [-Wdeprecated-declarations]
  128 |       std::string extension = boost::filesystem::extension(vm["polyout"].as<std::string>());
      |                               ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/boost/filesystem.hpp:21,
                 from /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/app/mshrable.cpp:25:
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   29 | inline std::string extension(const path& p)
      |                    ^~~~~~~~~
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-- Install configuration: "Release"
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-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator2D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/DolfinMeshUtils.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives2D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/OFFFileReader.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometry.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceReconstruction.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/Meshes.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALDomain3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGOperators.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/STLFileReader.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/SurfaceConsistency.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGGeometries3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGCGALMeshGenerator3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/CSGPrimitives3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/ASCFileReader.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/MeshGenerator.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include/mshr/TetgenMeshGenerator3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake
make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu'
dh_auto_install --builddir=obj-x86_64-linux-gnu-64 --destdir=debian/tmp64
	cd obj-x86_64-linux-gnu-64 && make -j1 install DESTDIR=/build/reproducible-path/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/debian/tmp64 AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64'
/usr/bin/cmake -S"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1" -B"/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64" --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2.0.dev0
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so.2019.2
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/bin/mshrable
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain2D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitive.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/GlobalInitializer.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator2D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/DolfinMeshUtils.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives2D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/OFFFileReader.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometry.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceReconstruction.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/Meshes.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALDomain3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGOperators.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/STLFileReader.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/SurfaceConsistency.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGGeometries3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGCGALMeshGenerator3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/CSGPrimitives3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/ASCFileReader.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/MeshGenerator.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include/mshr/TetgenMeshGenerator3D.h
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshrConfig.cmake
-- Installing: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/cmake/mshr/mshr-config.cmake
make[2]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/obj-x86_64-linux-gnu-64'
set -e; \
for v in python3.13 python3.12 ; do \
   cd python; \
   PETSC_DIR=/usr/lib/petscdir/petsc3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc3.22/x86_64-linux-gnu-real \
   CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr \
   $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp --install-layout=deb; \
   PETSC_DIR=/usr/lib/petscdir/petsc64-3.22/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.22/x86_64-linux-gnu-real \
   CMAKE_PREFIX_PATH=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr MSHR_LIB_NAME_EXT="64" DOLFIN_LIB_NAME_EXT="64" \
   $v setup.py build --build-base=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-$v install --root=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64 --install-layout=deb; \
   cd ..; \
done
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning, or
  preferably upgrade to using FindPython, either by calling it explicitly
  before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11.
Call Stack (most recent call first):
  /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
  /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include)
  /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include)
  CMakeLists.txt:22 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.6")
-- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu/libmshr.so
-- Configuring done (1.4s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build
running build
running build_py
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr
copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr
running build_ext
building 'mshr.cpp' extension
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running install_lib
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr
copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr
copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr
byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc
running install_egg_info
running egg_info
creating mshr.egg-info
writing mshr.egg-info/PKG-INFO
writing dependency_links to mshr.egg-info/dependency_links.txt
writing requirements to mshr.egg-info/requires.txt
writing top-level names to mshr.egg-info/top_level.txt
writing manifest file 'mshr.egg-info/SOURCES.txt'
reading manifest file 'mshr.egg-info/SOURCES.txt'
writing manifest file 'mshr.egg-info/SOURCES.txt'
Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info
Skipping SOURCES.txt
running install_scripts
CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.10 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value.  Or, use the <min>...<max> syntax
  to tell CMake that the project requires at least <min> but has been updated
  to work with policies introduced by <max> or earlier.


-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at /usr/lib/cmake/pybind11/FindPythonLibsNew.cmake:101 (message):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning, or
  preferably upgrade to using FindPython, either by calling it explicitly
  before pybind11, or by setting PYBIND11_FINDPYTHON ON before pybind11.
Call Stack (most recent call first):
  /usr/lib/cmake/pybind11/pybind11Tools.cmake:50 (find_package)
  /usr/lib/cmake/pybind11/pybind11Common.cmake:228 (include)
  /usr/lib/cmake/pybind11/pybind11Config.cmake:250 (include)
  CMakeLists.txt:22 (find_package)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /usr/bin/python3 (found suitable version "3.13.1", minimum required is "3.7")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.13.so
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- Found pybind11: /usr/include (found version "2.13.6")
-- Found mshr: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu/libmshr64.so
-- Configuring done (1.2s)
-- Generating done (0.0s)
-- Build files have been written to: /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64
running build
running build_py
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr
copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr
running build_ext
building 'mshr.cpp' extension
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.13 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -std=c++17
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/temp.linux-x86_64-cpython-313/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running install_lib
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr
copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr
copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.13/lib.linux-x86_64-cpython-313/mshr/cpp.cpython-313-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr
byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-313.pyc
running install_egg_info
running egg_info
writing mshr.egg-info/PKG-INFO
writing dependency_links to mshr.egg-info/dependency_links.txt
writing requirements to mshr.egg-info/requires.txt
writing top-level names to mshr.egg-info/top_level.txt
reading manifest file 'mshr.egg-info/SOURCES.txt'
writing manifest file 'mshr.egg-info/SOURCES.txt'
Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info
Skipping SOURCES.txt
running install_scripts
running build
running build_py
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr
copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr
running build_ext
building 'mshr.cpp' extension
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/temp.linux-x86_64-cpython-312/src
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/include -I/usr/include/python3.12 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -std=c++17
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running install_lib
copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr
byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-312.pyc
running install_egg_info
running egg_info
writing mshr.egg-info/PKG-INFO
writing dependency_links to mshr.egg-info/dependency_links.txt
writing requirements to mshr.egg-info/requires.txt
writing top-level names to mshr.egg-info/top_level.txt
reading manifest file 'mshr.egg-info/SOURCES.txt'
writing manifest file 'mshr.egg-info/SOURCES.txt'
removing '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info' (and everything under it)
Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info
Skipping SOURCES.txt
running install_scripts
running build
running build_py
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr
copying mshr/__init__.py -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr
running build_ext
building 'mshr.cpp' extension
creating /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/temp.linux-x86_64-cpython-312/src
x86_64-linux-gnu-g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include -I/usr/include -I/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/include -I/usr/include/python3.12 -c src/mshr.cpp -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -std=c++17
x86_64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/temp.linux-x86_64-cpython-312/src/mshr.o -L/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmshr64 -o /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!

        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.

        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
        ********************************************************************************

!!
  self.initialize_options()
running install_lib
copying /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/python/build64-python3.12/lib.linux-x86_64-cpython-312/mshr/cpp.cpython-312-x86_64-linux-gnu.so -> /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr
byte-compiling /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr/__init__.py to __init__.cpython-312.pyc
running install_egg_info
running egg_info
writing mshr.egg-info/PKG-INFO
writing dependency_links to mshr.egg-info/dependency_links.txt
writing requirements to mshr.egg-info/requires.txt
writing top-level names to mshr.egg-info/top_level.txt
reading manifest file 'mshr.egg-info/SOURCES.txt'
writing manifest file 'mshr.egg-info/SOURCES.txt'
removing '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info' (and everything under it)
Copying mshr.egg-info to /build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1/debian/tmp64/usr/lib/python3/dist-packages/mshr-2019.2.0.dev0.egg-info
Skipping SOURCES.txt
running install_scripts
dh_numpy3
make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
   dh_install -O--buildsystem=cmake -O--no-parallel
   dh_installdocs -O--buildsystem=cmake -O--no-parallel
   dh_installchangelogs -O--buildsystem=cmake -O--no-parallel
   dh_installexamples -O--buildsystem=cmake -O--no-parallel
   dh_installman -O--buildsystem=cmake -O--no-parallel
   debian/rules override_dh_python3-arch
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
dh_python3 -a
dh_numpy3 -a
mkdir -p debian/python3-mshr-real//usr/lib/mshr
mv debian/python3-mshr-real/usr/lib/python3  debian/python3-mshr-real//usr/lib/mshr
mkdir -p debian/python3-mshr64-real//usr/lib/mshr64
mv debian/python3-mshr64-real/usr/lib/python3  debian/python3-mshr64-real//usr/lib/mshr64
make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
   dh_python3 -O--buildsystem=cmake -O--no-parallel -Nlibmshr2019.2 -Nlibmshr-dev -Nlibmshr-dev-common -Npython3-mshr-real -Nlibmshr64-2019.2 -Nlibmshr64-dev -Npython3-mshr64-real
   dh_installsystemduser -O--buildsystem=cmake -O--no-parallel
   dh_perl -O--buildsystem=cmake -O--no-parallel
   dh_link -O--buildsystem=cmake -O--no-parallel
   dh_strip_nondeterminism -O--buildsystem=cmake -O--no-parallel
   dh_compress -O--buildsystem=cmake -O--no-parallel
   dh_fixperms -O--buildsystem=cmake -O--no-parallel
   dh_missing -O--buildsystem=cmake -O--no-parallel
   debian/rules override_dh_dwz
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \
    *\ amd64\ *) echo "skipping dh_dwz since debug symbols (-g) have been switched off for amd64";; \
    *) dh_dwz;; \
esac
make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
   debian/rules override_dh_strip
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
case " armhf i386 mips64el mipsel hppa m68k powerpc x32 " in \
    *\ amd64\ *) dh_strip --no-automatic-dbgsym;; \
    *) dh_strip;; \
esac
make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
   dh_makeshlibs -a -O--buildsystem=cmake -O--no-parallel
   dh_shlibdeps -a -O--buildsystem=cmake -O--no-parallel
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib64/ld-linux-x86-64.so.2
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib64/ld-linux-x86-64.so.2
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib64/ld-linux-x86-64.so.2
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib64/ld-linux-x86-64.so.2
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged
   dh_installdeb -O--buildsystem=cmake -O--no-parallel
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
py3versions: no X-Python3-Version in control file, using supported versions
dh_gencontrol -- -Vfenics:Upstream-Version=2019.2 \
	-Vpybind11:Upstream-Version=2.13 -Vpybind11:Next-Upstream-Version=3
dpkg-gencontrol: warning: Depends field of package libmshr64-dev: substitution variable ${shlibs:Depends} used, but is not defined
dpkg-gencontrol: warning: package libmshr2019.2: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr64-2019.2: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr-dev-common: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr64-dev: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr-dev: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr64-2019.2: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr2019.2: substitution variable ${python3:Depends} unused, but is defined
dpkg-gencontrol: warning: package libmshr-dev: substitution variable ${python3:Depends} unused, but is defined
make[1]: Leaving directory '/build/reproducible-path/mshr-2019.2.0~git20230811.ff54a68+dfsg1'
   dh_md5sums -O--buildsystem=cmake -O--no-parallel
   dh_builddeb -O--buildsystem=cmake -O--no-parallel
dpkg-deb: building package 'libmshr2019.2' in '../libmshr2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'libmshr-dev-common' in '../libmshr-dev-common_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'libmshr-dev' in '../libmshr-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'libmshr64-2019.2' in '../libmshr64-2019.2_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'python3-mshr-real' in '../python3-mshr-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'libmshr64-dev' in '../libmshr64-dev_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'python3-mshr64-real-dbgsym' in '../python3-mshr64-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'python3-mshr64-real' in '../python3-mshr64-real_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'python3-mshr' in '../python3-mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_all.deb'.
dpkg-deb: building package 'libmshr-dev-dbgsym' in '../libmshr-dev-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'python3-mshr-real-dbgsym' in '../python3-mshr-real-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'libmshr64-2019.2-dbgsym' in '../libmshr64-2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
dpkg-deb: building package 'libmshr2019.2-dbgsym' in '../libmshr2019.2-dbgsym_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.deb'.
 dpkg-genbuildinfo --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.buildinfo
 dpkg-genchanges --build=binary -O../mshr_2019.2.0~git20230811.ff54a68+dfsg1-4_amd64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env 
I: removing directory /srv/workspace/pbuilder/2853964 and its subdirectories
I: Current time: Tue Feb 24 01:56:26 -12 2026
I: pbuilder-time-stamp: 1771941386